GE
nome-wide tool for
M
ulti-scale
M
odeling
data
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xtraction and
R
epresentation
for
Saccharomyces cerevisiae
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Visualization query
Gene
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CYCLoPs WT1
CYCLoPs WT1
CYCLoPs WT2
CYCLoPs WT3
GO term 1
GO term 2
Peak expression phase
No clustering
CYCLoPs WT1
CYCLoPs WT2
CYCLoPs WT3
GO term 1
GO term 2
Peak expression phase
No clustering
Peak expression phase
CYCLoPs WT1
CYCLoPs WT2
CYCLoPs WT3
GO term 1
GO term 2
Peak expression phase
No coloring
CYCLoPs WT1
CYCLoPs WT2
CYCLoPs WT3
GO term 1
GO term 2
Peak expression phase
No coloring
2 items selected
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Deselect All
physical
genetic
regulation
physical
genetic
regulation
Select at least 1 type of interaction.
Advanced query options
Number of experiments
Number of methods
Method types
Number of publications
Cannot be lower than 1
Cannot be lower than 1
88 items selected
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Deselect All
Affinity Capture-Luminescence
Affinity Capture-MS
Affinity Capture-RNA
Affinity Capture-Western
beta-galactosidase reporter gene assay evidence
Biochemical Activity
caspase assay evidence
ChEC-Seq experiments
chromatin immunoprecipitation evidence
chromatin immunoprecipitation- exonuclease evidence
chromatin immunoprecipitation-chip evidence
chromatin immunoprecipitation-PCR evidence
chromatin immunoprecipitation-qPCR evidence
chromatin immunoprecipitation-seq evidence
Co-crystal Structure
Co-fractionation
co-immunoprecipitation evidence
Co-localization
Co-purification
deubiquitination assay evidence
DNA to cDNA expression microarray evidence
DNAse footprinting evidence
Dosage Growth Defect
Dosage Lethality
Dosage Rescue
electrophoretic mobility shift assay evidence
enzymatic activity assay evidence
expression microarray evidence
Far Western
fluorescence in situ hybridization evidence
FRET
green fluorescent protein fusion protein localization evidence
green fluorescent protein immunolocalization evidence
green fluorescent protein reporter gene assay evidence
immunodetection assay evidence
immunoprecipitation evidence
in vitro assay evidence
in vitro deubiquitination assay evidence
in vitro methylation assay evidence
in vitro phosphatase assay evidence
in vitro sumoylation assay evidence
in vitro ubiquitination assay evidence
luciferase reporter gene assay evidence
luciferase reporter gene assay evidence used in manual assertion
mass spectrometry evidence
methylation assay evidence
methylation interference footprinting evidence
mutant phenotype evidence
Negative Genetic
northern blot evidence
nucleic acid binding evidence
PCA
Phenotypic Enhancement
Phenotypic Suppression
phosphatase assay evidence
physical interaction evidence
Positive Genetic
protein kinase assay evidence
protein mass spectrometry evidence
protein separation followed by direct sequencing evidence
Protein-peptide
Protein-RNA
Proximity Label-MS
qualitative western immunoblotting evidence
quantitative mass spectrometry evidence
quantitative polymerase chain reaction evidence
quantitative reverse transcription polymerase chain reaction evidence
quantitative western immunoblotting evidence
quantitative western immunoblotting evidence used in manual assertion
Reconstituted Complex
reporter gene assay evidence
reverse transcription polymerase chain reaction evidence
RNA protection assay evidence
RNA-sequencing evidence
S1 nuclease protection assay evidence
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence
Synthetic Growth Defect
Synthetic Haploinsufficiency
Synthetic Lethality
Synthetic Rescue
transcript expression evidence
transcriptional activation assay evidence
translation assay evidence
transport assay evidence
tryptic phosphopeptide mapping assay evidence
two-dimensional polyacrylamide gel electrophoresis evidence
Two-hybrid
ubiquitination assay evidence
Affinity Capture-Luminescence
Affinity Capture-MS
Affinity Capture-RNA
Affinity Capture-Western
beta-galactosidase reporter gene assay evidence
Biochemical Activity
caspase assay evidence
ChEC-Seq experiments
chromatin immunoprecipitation evidence
chromatin immunoprecipitation- exonuclease evidence
chromatin immunoprecipitation-chip evidence
chromatin immunoprecipitation-PCR evidence
chromatin immunoprecipitation-qPCR evidence
chromatin immunoprecipitation-seq evidence
Co-crystal Structure
Co-fractionation
co-immunoprecipitation evidence
Co-localization
Co-purification
deubiquitination assay evidence
DNA to cDNA expression microarray evidence
DNAse footprinting evidence
Dosage Growth Defect
Dosage Lethality
Dosage Rescue
electrophoretic mobility shift assay evidence
enzymatic activity assay evidence
expression microarray evidence
Far Western
fluorescence in situ hybridization evidence
FRET
green fluorescent protein fusion protein localization evidence
green fluorescent protein immunolocalization evidence
green fluorescent protein reporter gene assay evidence
immunodetection assay evidence
immunoprecipitation evidence
in vitro assay evidence
in vitro deubiquitination assay evidence
in vitro methylation assay evidence
in vitro phosphatase assay evidence
in vitro sumoylation assay evidence
in vitro ubiquitination assay evidence
luciferase reporter gene assay evidence
luciferase reporter gene assay evidence used in manual assertion
mass spectrometry evidence
methylation assay evidence
methylation interference footprinting evidence
mutant phenotype evidence
Negative Genetic
northern blot evidence
nucleic acid binding evidence
PCA
Phenotypic Enhancement
Phenotypic Suppression
phosphatase assay evidence
physical interaction evidence
Positive Genetic
protein kinase assay evidence
protein mass spectrometry evidence
protein separation followed by direct sequencing evidence
Protein-peptide
Protein-RNA
Proximity Label-MS
qualitative western immunoblotting evidence
quantitative mass spectrometry evidence
quantitative polymerase chain reaction evidence
quantitative reverse transcription polymerase chain reaction evidence
quantitative western immunoblotting evidence
quantitative western immunoblotting evidence used in manual assertion
Reconstituted Complex
reporter gene assay evidence
reverse transcription polymerase chain reaction evidence
RNA protection assay evidence
RNA-sequencing evidence
S1 nuclease protection assay evidence
sodium dodecyl sulfate polyacrylamide gel electrophoresis evidence
Synthetic Growth Defect
Synthetic Haploinsufficiency
Synthetic Lethality
Synthetic Rescue
transcript expression evidence
transcriptional activation assay evidence
translation assay evidence
transport assay evidence
tryptic phosphopeptide mapping assay evidence
two-dimensional polyacrylamide gel electrophoresis evidence
Two-hybrid
ubiquitination assay evidence
Select at least 1 method.
Cannot be lower than 1
Process
Compartment
Peak expression phase
6 items selected
Select All
Deselect All
Cell cycle
Cell division
DNA replication
Metabolism
Signal transduction
None
Cell cycle
Cell division
DNA replication
Metabolism
Signal transduction
None
Select at least 1 process.
Any
Any
CYCLoPs: Bud
CYCLoPs: Budneck
CYCLoPs: Budsite
CYCLoPs: Cell Periphery
CYCLoPs: Cort. Patches
CYCLoPs: Cytoplasm
CYCLoPs: Endosome
CYCLoPs: ER
CYCLoPs: Golgi
CYCLoPs: Mito
CYCLoPs: Nuc Periphery
CYCLoPs: Nucleolus
CYCLoPs: Nucleus
CYCLoPs: Peroxisome
CYCLoPs: SpindlePole
CYCLoPs: Vac/Vac Memb
GFP: actin
GFP: ambiguous
GFP: bud
GFP: bud neck
GFP: cell periphery
GFP: cytoplasm
GFP: early Golgi
GFP: endosome
GFP: ER
GFP: ER to Golgi
GFP: Golgi
GFP: late Golgi
GFP: lipid particle
GFP: microtubule
GFP: mitochondrion
GFP: no data
GFP: nuclear periphery
GFP: nucleolus
GFP: nucleus
GFP: peroxisome
GFP: punctate composite
GFP: spindle pole
GFP: vacuolar membrane
GFP: vacuole
no data
Any
CYCLoPs: Bud
CYCLoPs: Budneck
CYCLoPs: Budsite
CYCLoPs: Cell Periphery
CYCLoPs: Cort. Patches
CYCLoPs: Cytoplasm
CYCLoPs: Endosome
CYCLoPs: ER
CYCLoPs: Golgi
CYCLoPs: Mito
CYCLoPs: Nuc Periphery
CYCLoPs: Nucleolus
CYCLoPs: Nucleus
CYCLoPs: Peroxisome
CYCLoPs: SpindlePole
CYCLoPs: Vac/Vac Memb
GFP: actin
GFP: ambiguous
GFP: bud
GFP: bud neck
GFP: cell periphery
GFP: cytoplasm
GFP: early Golgi
GFP: endosome
GFP: ER
GFP: ER to Golgi
GFP: Golgi
GFP: late Golgi
GFP: lipid particle
GFP: microtubule
GFP: mitochondrion
GFP: no data
GFP: nuclear periphery
GFP: nucleolus
GFP: nucleus
GFP: peroxisome
GFP: punctate composite
GFP: spindle pole
GFP: vacuolar membrane
GFP: vacuole
no data
Select at least 1 compartment.
9 items selected
Select All
Deselect All
G1(P)
G1/S
S
G2
G2/M
M
M/G1
G1
No data
G1(P)
G1/S
S
G2
G2/M
M
M/G1
G1
No data
Select at least 1 phase.
Max. number of nodes visualized
Node selection criteria
Minimum: 2. Maximum: 100. See the full network link after submission.
Eigenvector centrality
Degree centrality
Eigenvector centrality
Katz centrality
Degree centrality
Eigenvector centrality
Katz centrality
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