| DCS1 | YLR270W | Non-essential hydrolase involved in mRNA decapping | physical | 3 | 2 | 3 | Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western | 
            
                | BRE2 | YLR015W | Subunit of COMPASS (Set1C) complex | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | HSP78 | YDR258C | Oligomeric mitochondrial matrix chaperone | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GET1 | YGL020C | Subunit of the GET complex | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SEC28 | YIL076W | Epsilon-COP subunit of the coatomer | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | VPS9 | YML097C | Guanine nucleotide exchange factor (GEF) and ubiquitin receptor | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | YAR1 | YPL239W | Nucleocytoplasmic shuttling assembly chaperone | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SNX4 | YJL036W | Sorting nexin | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | YPT7 | YML001W | Rab family GTPase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ASK10 | YGR097W | Regulator of the Fps1p glycerol channel | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | RTF1 | YGL244W | Subunit of RNAPII-associated chromatin remodeling Paf1 complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | RAD27 | YKL113C | 5' to 3' exonuclease, 5' flap endonuclease | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | BUR6 | YER159C | Subunit of a heterodimeric NC2 transcription regulator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SUA7 | YPR086W | Transcription factor TFIIB | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | NCB2 | YDR397C | Subunit of a heterodimeric NC2 transcription regulator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | BRR2 | YER172C | RNA-dependent ATPase RNA helicase (DEIH box) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BRE1 | YDL074C | E3 ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ARP3 | YJR065C | Essential component of the Arp2/3 complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CCL1 | YPR025C | Cyclin partner of the cyclin-dependent kinase (CDK) Kin28p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BNI1 | YNL271C | Formin | physical | 1 | 1 | 1 | Reconstituted Complex | 
            
                | CDC15 | YAR019C | Hippo-like kinase of the Mitotic Exit Network | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YAK1 | YJL141C | Serine-threonine protein kinase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NET1 | YJL076W | Core subunit of the RENT complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YPL245W | YPL245W | Putative protein of unknown function | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | GIS2 | YNL255C | Translational activator for mRNAs with internal ribosome entry sites | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PUB1 | YNL016W | Poly (A)+ RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SSA1 | YAL005C | ATPase involved in protein folding and NLS-directed nuclear transport | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | EMG1 | YLR186W | Methyltransferase for rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NRD1 | YNL251C | RNA-binding subunit of Nrd1 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TEL2 | YGR099W | Subunit of the ASTRA complex, involved in chromatin remodeling | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | GPI11 | YDR302W | ER membrane protein involved in a late step of GPI anchor assembly | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | OKP1 | YGR179C | Outer kinetochore protein required for accurate chromosome segregation | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SLA2 | YNL243W | Adaptor protein that links actin to clathrin and endocytosis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MCM3 | YEL032W | Protein involved in DNA replication | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL28 | YGL103W | Ribosomal 60S subunit protein L28 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL10 | YLR075W | Ribosomal 60S subunit protein L10 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LST8 | YNL006W | Protein required for the transport of Gap1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HAP3 | YBL021C | Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | WWM1 | YFL010C | WW domain containing protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RMD9 | YGL107C | Mitochondrial protein that controls mitochondrial gene expression | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GTT2 | YLL060C | Glutathione S-transferase capable of homodimerization | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRPL24 | YMR193W | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FET4 | YMR319C | Low-affinity Fe(II) transporter of the plasma membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NTG2 | YOL043C | DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ICE2 | YIL090W | Integral ER membrane protein with type-III transmembrane domains | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS24 | YKL041W | One of four subunits of the ESCRT-III complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VIP1 | YLR410W | Bifunctional inositol pyrophosphate kinase and phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UBX2 | YML013W | Bridging factor involved in ER-associated protein degradation (ERAD) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS27 | YNR006W | Endosomal protein that forms a complex with Hse1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRM3 | YPL192C | Protein required for nuclear envelope fusion during karyogamy | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CET1 | YPL228W | RNA 5'-triphosphatase involved in mRNA 5' capping | genetic | 1 | 1 | 1 | Negative Genetic |