GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	physical	21	7	12	Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-fractionation, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Co-purification, Biochemical Activity, Reconstituted Complex, Co-crystal Structure, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS
YDJ1	YNL064C	Type I HSP40 co-chaperone	physical	16	6	15	Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Biochemical Activity, Co-fractionation, Co-purification, Biochemical Activity, Biochemical Activity, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex
SSA2	YLL024C	HSP70 family ATP-binding protein	genetic	16	4	15	Phenotypic Enhancement, Synthetic Growth Defect, Synthetic Growth Defect, Synthetic Lethality, Synthetic Lethality, Phenotypic Enhancement, Phenotypic Enhancement, Synthetic Lethality, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Phenotypic Enhancement, Synthetic Growth Defect, Phenotypic Enhancement
HSP82	YPL240C	Hsp90 chaperone	physical	15	3	11	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex
SIS1	YNL007C	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p	physical	14	5	11	Affinity Capture-Western, Affinity Capture-Western, Protein-peptide, Reconstituted Complex, Reconstituted Complex, Biochemical Activity, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS
SUP35	YDR172W	Translation termination factor eRF3	physical	13	5	9	Reconstituted Complex, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Co-localization, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS
FES1	YBR101C	Hsp70 (Ssa1p) nucleotide exchange factor	physical	10	5	8	Affinity Capture-Western, Two-hybrid, Biochemical Activity, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Reconstituted Complex, Reconstituted Complex
HSF1	YGL073W	Trimeric heat shock transcription factor	physical	9	4	5	Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western, Co-localization, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS
URE2	YNL229C	Nitrogen catabolite repression transcriptional regulator	physical	9	3	4	Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Reconstituted Complex, Reconstituted Complex
STI1	YOR027W	Evolutionarily-conserved Hsp90 cochaperone	physical	8	4	6	Reconstituted Complex, Two-hybrid, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Co-crystal Structure, Reconstituted Complex, Reconstituted Complex
SGT2	YOR007C	Glutamine-rich cytoplasmic cochaperone	physical	7	3	5	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	6	1	5	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PAB1	YER165W	Poly(A) binding protein	physical	6	3	4	Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
YDJ1	YNL064C	Type I HSP40 co-chaperone	genetic	5	4	5	Phenotypic Enhancement, Synthetic Lethality, Dosage Rescue, Phenotypic Enhancement, Dosage Growth Defect
HSP104	YLL026W	Disaggregase	physical	5	3	4	Reconstituted Complex, Protein-peptide, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS
SSA2	YLL024C	HSP70 family ATP-binding protein	physical	5	3	3	Affinity Capture-MS, Co-fractionation, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
HSP104	YLL026W	Disaggregase	genetic	4	3	4	Dosage Rescue, Phenotypic Enhancement, Phenotypic Suppression, Phenotypic Enhancement
PRE1	YER012W	Beta 4 subunit of the 20S proteasome	physical	4	2	4	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS
SSA3	YBL075C	ATPase involved in protein folding and the response to stress	genetic	4	2	4	Dosage Rescue, Phenotypic Enhancement, Phenotypic Enhancement, Phenotypic Enhancement
TOM71	YHR117W	Mitochondrial outer membrane protein	physical	4	2	4	Co-crystal Structure, Affinity Capture-MS, Co-crystal Structure, Affinity Capture-MS
URA2	YJL130C	Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase	physical	4	2	4	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPA135	YPR010C	RNA polymerase I second largest subunit A135	physical	4	1	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	physical	4	1	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
CPR6	YLR216C	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	4	2	3	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS
SSE2	YBR169C	Member of Hsp110 subclass of the heat shock protein 70 (HSP70) family	physical	4	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
CPR7	YJR032W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	4	2	3	Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS
EFT2	YDR385W	Elongation factor 2 (EF-2), also encoded by EFT1	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
CLU1	YMR012W	Subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
AHA1	YDR214W	Co-chaperone that binds Hsp82p and activates its ATPase activity	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ALY2	YJL084C	Alpha arrestin, Ub-ligase adaptor for Rsp5p	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
MYO5	YMR109W	One of two type I myosin motors	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HRB1	YNL004W	Poly(A+) RNA-binding protein	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
EFT1	YOR133W	Elongation factor 2 (EF-2), also encoded by EFT2	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RNR4	YGR180C	Ribonucleotide-diphosphate reductase (RNR) small subunit	physical	4	2	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
SIS1	YNL007C	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p	genetic	3	3	3	Phenotypic Enhancement, Synthetic Rescue, Dosage Growth Defect
FKH1	YIL131C	Forkhead family transcription factor	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
MSN2	YMR037C	Stress-responsive transcriptional activator	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, RNA-sequencing evidence
CDC28	YBR160W	Cyclin-dependent kinase (CDK) catalytic subunit	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Biochemical Activity
NUP60	YAR002W	FG-nucleoporin component of central core of the nuclear pore complex	physical	3	2	3	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
SSA4	YER103W	Heat shock protein that is highly induced upon stress	genetic	3	2	3	Synthetic Lethality, Phenotypic Enhancement, Phenotypic Enhancement
HSF1	YGL073W	Trimeric heat shock transcription factor	genetic	3	2	3	Synthetic Rescue, Synthetic Rescue, Phenotypic Suppression
SNL1	YIL016W	Ribosome-associated protein	physical	3	2	3	Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex
GTS1	YGL181W	Protein involved in Arf3p regulation and in transcription regulation	physical	3	2	3	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPN11	YFR004W	Metalloprotease subunit of 19S regulatory particle	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
IMP4	YNL075W	Component of the SSU processome	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPL2A	YFR031C-A	Ribosomal 60S subunit protein L2A	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SNF1	YDR477W	AMP-activated S/T protein kinase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PRB1	YEL060C	Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PMA1	YGL008C	Plasma membrane P2-type H+-ATPase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
DEF1	YKL054C	RNAPII degradation factor	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPL4A	YBR031W	Ribosomal 60S subunit protein L4A	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS4A	YJR145C	Protein component of the small (40S) ribosomal subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
BRE5	YNR051C	Ubiquitin protease cofactor	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSC1	YJR045C	Hsp70 family ATPase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
YRA2	YKL214C	Member of the REF (RNA and export factor binding proteins) family	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
VMA2	YBR127C	Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TIF35	YDR429C	eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
KAR2	YJL034W	ATPase involved in protein import into the ER	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ATP1	YBL099W	Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS2	YGL123W	Protein component of the small (40S) subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HBT1	YDL223C	Shmoo tip protein, substrate of Hub1p ubiquitin-like protein	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPL18A	YOL120C	Ribosomal 60S subunit protein L18A	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RTN1	YDR233C	Reticulon protein	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HSP26	YBR072W	Small heat shock protein (sHSP) with chaperone activity	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS6A	YPL090C	Protein component of the small (40S) ribosomal subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPL13B	YMR142C	Ribosomal 60S subunit protein L13B	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
MES1	YGR264C	Methionyl-tRNA synthetase	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
DIS3	YOL021C	Exosome core complex catalytic subunit	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
ACT1	YFL039C	Actin, structural protein in cytoskeleton	genetic	3	2	2	Negative Genetic, Positive Genetic, Negative Genetic
BOS1	YLR078C	v-SNARE (vesicle specific SNAP receptor)	physical	3	2	2	FRET, Reconstituted Complex, Reconstituted Complex
EGO4	YNR034W-A	Protein of unknown function	physical	3	2	2	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS
RPN2	YIL075C	Subunit of the 26S proteasome	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ECM16	YMR128W	Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
CHC1	YGL206C	Clathrin heavy chain	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
MRH4	YGL064C	Mitochondrial ATP-dependent RNA helicase of the DEAD-box family	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
BLM10	YFL007W	Proteasome activator	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
OSH2	YDL019C	Member of an oxysterol-binding protein family with seven members	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPT5	YOR117W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
UBP13	YBL067C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
USO1	YDL058W	Essential protein involved in vesicle-mediated ER to Golgi transport	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
UTP22	YGR090W	Component of the small-subunit processome	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
UTP10	YJL109C	Nucleolar protein	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TCB1	YOR086C	Lipid-binding ER protein involved in ER-plasma membrane tethering	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
OTU1	YFL044C	Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
REV3	YPL167C	Catalytic subunit of DNA polymerase zeta	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
OPI3	YJR073C	Methylene-fatty-acyl-phospholipid synthase	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
FKH2	YNL068C	Forkhead family transcription factor	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
HSF1	YGL073W	Trimeric heat shock transcription factor	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
MSN4	YKL062W	Stress-responsive transcriptional activator	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, RNA-sequencing evidence
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
BNI1	YNL271C	Formin	physical	2	2	2	Reconstituted Complex, Affinity Capture-MS
CNS1	YBR155W	TPR-containing co-chaperone	physical	2	2	2	Reconstituted Complex, Affinity Capture-MS
FES1	YBR101C	Hsp70 (Ssa1p) nucleotide exchange factor	genetic	2	2	2	Phenotypic Enhancement, Negative Genetic
PUF3	YLL013C	Protein of the mitochondrial outer surface	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SKP1	YDR328C	Evolutionarily conserved kinetochore protein	physical	2	2	2	Affinity Capture-MS, Affinity Capture-Western
NUP1	YOR098C	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	2	2	Affinity Capture-MS, Affinity Capture-Western
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	physical	2	2	2	Affinity Capture-MS, Reconstituted Complex
SBH1	YER087C-B	Beta subunit of Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p)	physical	2	2	2	Affinity Capture-MS, Reconstituted Complex
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	2	2	2	Affinity Capture-MS, Co-purification
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	genetic	2	2	2	Dosage Lethality, Phenotypic Suppression
UBP3	YER151C	Ubiquitin-specific protease that cleaves Ub-protein fusions	genetic	2	2	2	Dosage Rescue, Phenotypic Suppression
STE6	YKL209C	Plasma membrane ATP-binding cassette (ABC) transporter	physical	2	2	2	Affinity Capture-MS, Affinity Capture-Western
TOM70	YNL121C	Component of the TOM (translocase of outer membrane) complex	physical	2	2	2	Affinity Capture-MS, Reconstituted Complex
TOM22	YNL131W	Component of the TOM (Translocase of Outer Membrane) complex	physical	2	2	2	Affinity Capture-Western, Affinity Capture-MS
STT4	YLR305C	Phosphatidylinositol-4-kinase	genetic	2	2	2	Synthetic Lethality, Negative Genetic
PMP1	YCR024C-A	Regulatory subunit for the plasma membrane H(+)-ATPase Pma1p	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	genetic	2	1	2	Negative Genetic, Negative Genetic
ESF1	YDR365C	Nucleolar protein involved in pre-rRNA processing	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RVB2	YPL235W	ATP-dependent DNA helicase, also known as reptin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DBP9	YLR276C	DEAD-box protein required for 27S rRNA processing	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
EBP2	YKL172W	Required for 25S rRNA maturation and 60S ribosomal subunit assembly	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NOP4	YPL043W	Nucleolar protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL10	YLR075W	Ribosomal 60S subunit protein L10	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL16A	YIL133C	Ribosomal 60S subunit protein L16A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RLP7	YNL002C	Nucleolar protein similar to large ribosomal subunit L7 proteins	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PRP43	YGL120C	RNA helicase in the DEAH-box family	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NSR1	YGR159C	Nucleolin, nucleolar protein that binds nuclear localization sequences	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NOP56	YLR197W	Essential evolutionarily-conserved nucleolar protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
AIR2	YDL175C	RNA-binding subunit of the TRAMP nuclear RNA surveillance complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CDC33	YOL139C	Translation initiation factor eIF4E	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NPL3	YDR432W	RNA-binding protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RRB1	YMR131C	Specific assembly chaperone for ribosomal protein Rpl3p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RSC8	YFR037C	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARX1	YDR101C	Nuclear export factor for the ribosomal pre-60S subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PWP1	YLR196W	Protein with WD-40 repeats involved in rRNA processing	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPN10	YHR200W	Proteasome polyubiquitin receptor	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PRT1	YOR361C	eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPG1	YBR079C	eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RCL1	YOL010W	Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
REB1	YBR049C	RNA polymerase I enhancer binding protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
OLA1	YBR025C	P-loop ATPase with similarity to human OLA1 and bacterial YchF	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HGH1	YGR187C	Chaperone protein for translation factor eEF2	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
APL3	YBL037W	Alpha-adaptin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BMH2	YDR099W	14-3-3 protein, minor isoform	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BEM2	YER155C	Rho GTPase activating protein (RhoGAP)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CDC14	YFR028C	Protein phosphatase required for mitotic exit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CDC55	YGL190C	Regulatory subunit B of protein phosphatase 2A (PP2A)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NSA2	YER126C	Protein constituent of 66S pre-ribosomal particles	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RIX1	YHR197W	Component of the Rix1 complex and possibly pre-replicative complexes	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CYR1	YJL005W	Adenylate cyclase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HRP1	YOL123W	Subunit of cleavage factor I	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MPP10	YJR002W	Component of the SSU processome and 90S preribosome	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
KRR1	YCL059C	Nucleolar protein required for rRNA synthesis and ribosomal assembly	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HRR25	YPL204W	Conserved casein kinase, monopolin subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MHR1	YDR296W	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NCL1	YBL024W	S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DIG1	YPL049C	MAP kinase-responsive inhibitor of the Ste12p transcription factor	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PAA1	YDR071C	Polyamine acetyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ILV1	YER086W	Threonine deaminase, catalyzes first step in isoleucine biosynthesis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MKT1	YNL085W	Protein similar to nucleases that forms a complex with Pbp1p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RET2	YFR051C	Delta subunit of the coatomer complex (COPI)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC23	YPR181C	GTPase-activating protein, stimulates the GTPase activity of Sar1p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RIE1	YGR250C	RNA binding protein and negative regulator of START	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NET1	YJL076W	Core subunit of the RENT complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HRK1	YOR267C	Protein kinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
REG1	YDR028C	Regulatory subunit of type 1 protein phosphatase Glc7p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
IST2	YBR086C	Cortical ER protein involved in ER-plasma membrane (PM) tethering	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SCJ1	YMR214W	One of several homologs of bacterial chaperone DnaJ	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NOB1	YOR056C	Protein involved in proteasomal and 40S ribosomal subunit biogenesis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GET4	YOR164C	Protein involved in inserting tail-anchored proteins into ER membranes	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FPR3	YML074C	Nucleolar peptidyl-prolyl cis-trans isomerase (PPIase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CAR2	YLR438W	L-ornithine transaminase (OTAse)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BBC1	YJL020C	Protein possibly involved in assembly of actin patches	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RHO2	YNL090W	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	genetic	2	1	2	Negative Genetic, Negative Genetic
AKL1	YBR059C	Ser/Thr protein kinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RNR2	YJL026W	Ribonucleotide-diphosphate reductase (RNR), small subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FOL2	YGR267C	GTP-cyclohydrolase I, catalyzes first step in folic acid biosynthesis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
POR1	YNL055C	Mitochondrial porin (voltage-dependent anion channel)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PDI1	YCL043C	Protein disulfide isomerase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PET9	YBL030C	Major ADP/ATP carrier of the mitochondrial inner membrane	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ACS2	YLR153C	Acetyl-coA synthetase isoform	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ADH3	YMR083W	Mitochondrial alcohol dehydrogenase isozyme III	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RSP5	YER125W	NEDD4 family E3 ubiquitin ligase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HSL7	YBR133C	Protein arginine N-methyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPP0	YLR340W	Conserved ribosomal protein P0 of the ribosomal stalk	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
KRI1	YNL308C	Essential nucleolar protein required for 40S ribosome biogenesis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
EMI2	YDR516C	Hexokinase expressed during growth with low glucose levels	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HAL5	YJL165C	Snf1p-related nutrient-responsive protein kinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NOP13	YNL175C	Nucleolar protein found in preribosomal complexes	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PAP2	YOL115W	Non-canonical poly(A) polymerase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SPT2	YER161C	Protein involved in negative regulation of transcription	genetic	2	1	2	Synthetic Rescue, Synthetic Rescue
SOF1	YLL011W	Protein required for biogenesis of 40S (small) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MDJ1	YFL016C	Co-chaperone that stimulates HSP70 protein Ssc1p ATPase activity	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CYS3	YAL012W	Cystathionine gamma-lyase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SNF4	YGL115W	Activating gamma subunit of the AMP-activated Snf1p kinase complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL5	YPL131W	Ribosomal 60S subunit protein L5	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CUE5	YOR042W	Ubiquitin-binding protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PRS1	YKL181W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NMA1	YLR328W	Nicotinic acid mononucleotide adenylyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CSM1	YCR086W	Nucleolar protein that mediates homolog segregation during meiosis I	genetic	2	1	2	Negative Genetic, Negative Genetic
GNP1	YDR508C	Broad specificity amino acid permease	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
COQ5	YML110C	2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DET1	YDR051C	Acid phosphatase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PAL1	YDR348C	Protein of unknown function thought to be involved in endocytosis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NST1	YNL091W	Translational inhibitor and suppressor of proteasome-assembly defects	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CWC15	YDR163W	Non-essential protein involved in pre-mRNA splicing	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL9A	YGL147C	Ribosomal 60S subunit protein L9A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
AMD1	YML035C	AMP deaminase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HOS3	YPL116W	Trichostatin A-insensitive homodimeric histone deacetylase (HDAC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS11A	YDR025W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS1B	YML063W	Ribosomal protein of the small (40S) subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS9B	YBR189W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MOT2	YER068W	Ubiquitin-protein ligase subunit of the CCR4-NOT complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ELO2	YCR034W	Fatty acid elongase, involved in sphingolipid biosynthesis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ELO3	YLR372W	Elongase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC1	YDR164C	Sm-like protein involved in docking and fusion of exocytic vesicles	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YDL144C	YDL144C	Protein of unknown function	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
VID30	YGL227W	Central component of GID Complex, involved in FBPase degradation	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
STM1	YLR150W	Protein required for optimal translation under nutrient stress	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
UTP13	YLR222C	Nucleolar protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TRM44	YPL030W	tRNA(Ser) Um(44) 2'-O-methyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SSD1	YDR293C	Translational repressor	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TIF1	YKR059W	Translation initiation factor eIF4A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YEF3	YLR249W	Translation elongation factor 3	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
UBP1	YDL122W	Ubiquitin-specific protease	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
VMA1	YDL185W	Subunit A of the V1 peripheral membrane domain of V-ATPase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
XRN1	YGL173C	Evolutionarily-conserved 5'-3' exonuclease	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
UTP7	YER082C	Nucleolar protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TSR1	YDL060W	Protein required for processing of 20S pre-rRNA in the cytoplasm	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
VMA4	YOR332W	Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TEF1	YPR080W	Translational elongation factor EF-1 alpha	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TEF2	YBR118W	Translational elongation factor EF-1 alpha	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YMR045C	YMR045C	Retrotransposon TYA Gag and TYB Pol genes	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TRP3	YKL211C	Indole-3-glycerol-phosphate synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TUF1	YOR187W	Mitochondrial translation elongation factor Tu (EF-Tu)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
UGA1	YGR019W	Gamma-aminobutyrate (GABA) transaminase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YCL019W	YCL019W	Retrotransposon TYA Gag and TYB Pol genes	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TES1	YJR019C	Peroxisomal acyl-CoA thioesterase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC24	YIL109C	Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ABF1	YKL112W	DNA binding protein with possible chromatin-reorganizing activity	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CDC19	YAL038W	Pyruvate kinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL1A	YPL220W	Ribosomal 60S subunit protein L1A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PBP1	YGR178C	Component of glucose deprivation induced stress granules	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MCA1	YOR197W	Ca2+-dependent cysteine protease	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL11A	YPR102C	Ribosomal 60S subunit protein L11A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL7A	YGL076C	Ribosomal 60S subunit protein L7A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LYS21	YDL131W	Homocitrate synthase isozyme	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ILV6	YCL009C	Regulatory subunit of acetolactate synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL16B	YNL069C	Ribosomal 60S subunit protein L16B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FRA1	YLL029W	Protein involved in negative regulation of iron regulon transcription	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
COQ3	YOL096C	O-methyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BDH1	YAL060W	NAD-dependent (R,R)-butanediol dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LYS20	YDL182W	Homocitrate synthase isozyme and functions in DNA repair	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PUF4	YGL014W	Member of the PUF protein family	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
OCA4	YCR095C	Cytoplasmic protein required for replication of Brome mosaic virus	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FTR1	YER145C	High affinity iron permease	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PSP2	YML017W	Asn rich cytoplasmic protein that contains RGG motifs	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SHM2	YLR058C	Cytosolic serine hydroxymethyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL12A	YEL054C	Ribosomal 60S subunit protein L12A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL20A	YMR242C	Ribosomal 60S subunit protein L20A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL8B	YLL045C	Ribosomal 60S subunit protein L8A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS7B	YNL096C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL17B	YJL177W	Ribosomal 60S subunit protein L17B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL19A	YBR084C-A	Ribosomal 60S subunit protein L19A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARO2	YGL148W	Bifunctional chorismate synthase and flavin reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PAL2	YHR097C	Protein involved in clathrin-mediated endocytosis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
AST1	YBL069W	Lipid raft associated protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MSN4	YKL062W	Stress-responsive transcriptional activator	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PTK2	YJR059W	Serine/threonine protein kinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SKY1	YMR216C	SR protein kinase (SRPK)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PNC1	YGL037C	Nicotinamidase that converts nicotinamide to nicotinic acid	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NPR1	YNL183C	Protein kinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HXT1	YHR094C	Low-affinity glucose transporter of the major facilitator superfamily	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ERG4	YGL012W	C-24(28) sterol reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PIS1	YPR113W	Phosphatidylinositol synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SND3	YBR106W	Involved in SRP-independent protein targeting to the ER	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RRT14	YIL127C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SFB3	YHR098C	Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MMM1	YLL006W	ER integral membrane protein, ERMES complex subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ECM14	YHR132C	Conserved fungal protein with similarity to zinc carboxypeptidases	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MYO1	YHR023W	Type II myosin heavy chain	physical	2	2	1	PCA, Affinity Capture-Western
PRE9	YGR135W	Alpha 3 subunit of the 20S proteasome	genetic	2	2	1	Synthetic Growth Defect, Dosage Rescue
ACO1	YLR304C	Aconitase	physical	2	2	1	Reconstituted Complex, Affinity Capture-MS
CLG1	YGL215W	Cyclin-like protein that interacts with Pho85p	physical	2	2	1	Two-hybrid, Affinity Capture-Western
UFO1	YML088W	F-box receptor protein	physical	2	2	1	Affinity Capture-MS, Affinity Capture-Western
PCL1	YNL289W	Cyclin, interacts with cyclin-dependent kinase Pho85p	physical	2	2	1	Two-hybrid, Affinity Capture-Western
FBP1	YLR377C	Fructose-1,6-bisphosphatase	physical	2	2	1	Affinity Capture-MS, Affinity Capture-Western
CDC73	YLR418C	Component of the Paf1p complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPO21	YDL140C	RNA polymerase II largest subunit B220	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CKA1	YIL035C	Alpha catalytic subunit of casein kinase 2 (CK2)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
IKI3	YLR384C	Subunit of Elongator complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EAF1	YDR359C	Component of the NuA4 histone acetyltransferase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PRP8	YHR165C	Component of U4/U6-U5 snRNP complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SPP382	YLR424W	Essential protein that forms a dimer with Ntr2p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MAK21	YDR060W	Constituent of 66S pre-ribosomal particles	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NAT3	YPR131C	Catalytic subunit of the NatB N-terminal acetyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RAT1	YOR048C	Nuclear 5' to 3' single-stranded RNA exonuclease	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RRP46	YGR095C	Exosome non-catalytic core component	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPC34	YNR003C	RNA polymerase III subunit C34	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RRP8	YDR083W	Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MFT1	YML062C	Subunit of the THO complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RSC4	YKR008W	Component of the RSC chromatin remodeling complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PRP40	YKL012W	U1 snRNP protein involved in splicing	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DST1	YGL043W	General transcription elongation factor TFIIS	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SPT16	YGL207W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CFT1	YDR301W	RNA-binding subunit of the mRNA cleavage and polyadenylation factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
KAP104	YBR017C	Transportin or cytosolic karyopherin beta 2	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HAT1	YPL001W	Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
IRR1	YIL026C	Subunit of the cohesin complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LYS2	YBR115C	Alpha aminoadipate reductase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FAB1	YFR019W	1-phosphatidylinositol-3-phosphate 5-kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ATG26	YLR189C	UDP-glucose:sterol glucosyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MRPS28	YDR337W	Mitochondrial ribosomal protein of the small subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MRPS5	YBR251W	Mitochondrial ribosomal protein of the small subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MPH1	YIR002C	3'-5' DNA helicase involved in error-free bypass of DNA lesions	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HER1	YOR227W	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PFK1	YGR240C	Alpha subunit of heterooctameric phosphofructokinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
IDH2	YOR136W	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SAM1	YLR180W	S-adenosylmethionine synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SMC1	YFL008W	Subunit of the multiprotein cohesin complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SRO9	YCL037C	Cytoplasmic RNA-binding protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MCM2	YBL023C	Protein involved in DNA replication	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RRP12	YPL012W	Protein required for export of the ribosomal subunits	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MSD1	YPL104W	Mitochondrial aspartyl-tRNA synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LSP1	YPL004C	Eisosome core component	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GPP1	YIL053W	Constitutively expressed DL-glycerol-3-phosphate phosphatase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HIR3	YJR140C	Subunit of the HIR complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GDE1	YPL110C	Glycerophosphocholine (GroPCho) phosphodiesterase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CCT5	YJR064W	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PSR1	YLL010C	Plasma membrane-associated protein phosphatase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DLD3	YEL071W	2-hydroxyglutarate transhydrogenase, and minor D-lactate dehydrogenase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ERG10	YPL028W	Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DOP1	YDR141C	Protein involved in vesicular transport at trans-Golgi network (TGN)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SHP1	YBL058W	UBX domain-containing substrate adaptor for Cdc48p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CDC37	YDR168W	Essential Hsp90p co-chaperone	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ISN1	YOR155C	Inosine 5'-monophosphate (IMP)-specific 5'-nucleotidase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HIR2	YOR038C	Subunit of HIR nucleosome assembly complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CTF4	YPR135W	Chromatin-associated protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LHS1	YKL073W	Molecular chaperone of the endoplasmic reticulum lumen	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SKG3	YLR187W	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SKI2	YLR398C	Ski complex component and putative RNA helicase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CBR1	YIL043C	Cytochrome b reductase and NADH-dependent reductase for Dph3p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PMD1	YER132C	Protein with an N-terminal kelch-like domain	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SNF8	YPL002C	Component of the ESCRT-II complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GIP3	YPL137C	Cytoplasmic protein that regulates protein phosphatase 1 Glc7p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NNF1	YJR112W	Essential component of the outer kinetochore MIND complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SMC2	YFR031C	Subunit of the condensin complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HPC2	YBR215W	Subunit of the HIR complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SFL1	YOR140W	Transcriptional repressor and activator	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NIS1	YNL078W	Protein involved in axial bud site selection	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
STI1	YOR027W	Evolutionarily-conserved Hsp90 cochaperone	genetic	2	1	1	Phenotypic Enhancement, Phenotypic Enhancement
SWC5	YBR231C	Component of the SWR1 complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UTP4	YDR324C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YDR338C	YDR338C	Putative protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UBA2	YDR390C	Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Aos1p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TFB3	YDR460W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
VPS3	YDR495C	Component of CORVET membrane tethering complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YEL025C	YEL025C	Putative protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UBP6	YFR010W	Ubiquitin-specific protease	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YPP1	YGR198W	Cargo-transport protein involved in endocytosis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YGR237C	YGR237C	Putative protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YHR127W	YHR127W	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UTP25	YIL091C	Nucleolar protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YJR096W	YJR096W	Xylose and arabinose reductase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
URB1	YKL014C	Protein required for the normal accumulation of 25S and 5.8S rRNAs	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YMR099C	YMR099C	Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TRM732	YMR259C	Protein involved in 2'-O-methylation of C32 of substrate tRNAs	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TPS3	YMR261C	Regulatory subunit of trehalose-6-phosphate synthase/phosphatase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TOP1	YOL006C	Topoisomerase I	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
WRS1	YOL097C	Cytoplasmic tryptophanyl-tRNA synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TFC7	YOR110W	RNA pol III transcription initiation factor complex (TFIIIC) subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UBP2	YOR124C	Ubiquitin-specific protease	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
VPS17	YOR132W	Subunit of the membrane-associated retromer complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YPL108W	YPL108W	Cytoplasmic protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TAZ1	YPR140W	Lyso-phosphatidylcholine acyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TIF3	YPR163C	Translation initiation factor eIF-4B	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SSA4	YER103W	Heat shock protein that is highly induced upon stress	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YKE2	YLR200W	Subunit of the heterohexameric Gim/prefoldin protein complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TSA1	YML028W	Thioredoxin peroxidase	physical	2	1	1	Affinity Capture-Western, Affinity Capture-Western
NMD2	YHR077C	Protein involved in the nonsense-mediated mRNA decay (NMD) pathway	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GIC1	YHR061C	Rho-family GTPase interacting protein and Cdc42p effector	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BUD6	YLR319C	Actin- and formin-interacting protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SAM2	YDR502C	S-adenosylmethionine synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ENV11	YGR071C	Protein proposed to be involved in vacuolar functions	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EAF7	YNL136W	Subunit of the NuA4 histone acetyltransferase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PDS5	YMR076C	Cohesion maintenance factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ADE1	YAR015W	N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PAH1	YMR165C	Mg2+-dependent phosphatidate (PA) phosphatase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
IFA38	YBR159W	Microsomal beta-keto-reductase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SAT4	YCR008W	Ser/Thr protein kinase involved in salt tolerance, nutrient response	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SCM3	YDL139C	Nonhistone component of centromeric chromatin	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MET12	YPL023C	Protein with MTHFR activity in vitro	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ADE12	YNL220W	Adenylosuccinate synthase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SOL1	YNR034W	Protein with a possible role in tRNA export	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MSE1	YOL033W	Mitochondrial glutamyl-tRNA synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
KRE28	YDR532C	Subunit of a kinetochore-microtubule binding complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PTH2	YBL057C	One of two mitochondrially-localized peptidyl-tRNA hydrolases	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPS18B	YML026C	Protein component of the small (40S) ribosomal subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
APE4	YHR113W	Cytoplasmic aspartyl aminopeptidase with possible vacuole function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PNP1	YLR209C	Purine nucleoside phosphorylase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SET6	YPL165C	SET domain protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SOV1	YMR066W	Mitochondrial protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SFP1	YLR403W	Regulates transcription of ribosomal protein and biogenesis genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
MET32	YDR253C	Zinc-finger DNA-binding transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MET4	YNL103W	Leucine-zipper transcriptional activator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RGR1	YLR071C	Subunit of the RNA polymerase II mediator complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TFC7	YOR110W	RNA pol III transcription initiation factor complex (TFIIIC) subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SUA7	YPR086W	Transcription factor TFIIB	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPT3	YDR392W	Subunit of the SAGA and SAGA-like transcriptional regulatory complexes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPT7	YBR081C	Subunit of the SAGA transcriptional regulatory complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SRB5	YGR104C	Subunit of the RNA polymerase II mediator complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DSN1	YIR010W	Essential component of the outer kinetochore MIND complex	physical	1	1	1	Affinity Capture-MS
NSL1	YPL233W	Essential component of the MIND kinetochore complex	physical	1	1	1	Affinity Capture-MS
RPB2	YOR151C	RNA polymerase II second largest subunit B150	physical	1	1	1	Affinity Capture-MS
RVB1	YDR190C	ATP-dependent DNA helicase, also known as pontin	physical	1	1	1	Affinity Capture-MS
RPF1	YHR088W	Protein involved in assembly and export of the large ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPF2	YKR081C	Essential protein involved in rRNA maturation and ribosomal assembly	physical	1	1	1	Affinity Capture-MS
RPL27A	YHR010W	Ribosomal 60S subunit protein L27A	physical	1	1	1	Affinity Capture-MS
KAP123	YER110C	Karyopherin beta	physical	1	1	1	Affinity Capture-MS
MIA40	YKL195W	Import and assembly protein in mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-MS
NUC1	YJL208C	Major mitochondrial nuclease	physical	1	1	1	Affinity Capture-MS
RAX2	YLR084C	Protein required for the maintenance of bud site selection	physical	1	1	1	Affinity Capture-MS
COR1	YBL045C	Core subunit of the ubiquinol-cytochrome c reductase complex	physical	1	1	1	Affinity Capture-MS
PRP19	YLL036C	Splicing factor associated with the spliceosome	physical	1	1	1	Co-purification
RMP1	YLR145W	Subunit of RNase MRP	genetic	1	1	1	Negative Genetic
SNT309	YPR101W	Member of the NineTeen Complex (NTC)	genetic	1	1	1	Negative Genetic
FRT2	YAL028W	Tail-anchored ER membrane protein of unknown function	physical	1	1	1	Affinity Capture-MS
NAF1	YNL124W	RNA-binding protein required for the assembly of box H/ACA snoRNPs	physical	1	1	1	Affinity Capture-MS
KES1	YPL145C	Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger	physical	1	1	1	Affinity Capture-MS
GAR1	YHR089C	Protein component of the H/ACA snoRNP pseudouridylase complex	physical	1	1	1	Affinity Capture-MS
RAT1	YOR048C	Nuclear 5' to 3' single-stranded RNA exonuclease	genetic	1	1	1	Negative Genetic
LSM1	YJL124C	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
LSM6	YDR378C	Lsm (Like Sm) protein	genetic	1	1	1	Negative Genetic
RRP6	YOR001W	Nuclear exosome exonuclease component	physical	1	1	1	Affinity Capture-MS
RPC82	YPR190C	RNA polymerase III subunit C82	physical	1	1	1	Affinity Capture-MS
RPL3	YOR063W	Ribosomal 60S subunit protein L3	physical	1	1	1	Affinity Capture-MS
RPL3	YOR063W	Ribosomal 60S subunit protein L3	genetic	1	1	1	Synthetic Lethality
NPL6	YMR091C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-MS
RSC2	YLR357W	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-MS
RSC3	YDR303C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-MS
NAP1	YKR048C	Histone chaperone and assembly chaperone for Rps6a/b	physical	1	1	1	Affinity Capture-MS
RPN1	YHR027C	Non-ATPase base subunit of the 19S RP of the 26S proteasome	physical	1	1	1	Affinity Capture-MS
RPN12	YFR052W	Subunit of the 19S regulatory particle of the 26S proteasome lid	genetic	1	1	1	Synthetic Growth Defect
RPT1	YKL145W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-Western
KAP95	YLR347C	Karyopherin beta	physical	1	1	1	Affinity Capture-Western
SRP1	YNL189W	Karyopherin alpha homolog	genetic	1	1	1	Dosage Rescue
RBG2	YGR173W	Protein with a role in translation	physical	1	1	1	Affinity Capture-Western
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	Affinity Capture-MS
NAB2	YGL122C	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
NUP82	YJL061W	Linker nucleoporin component of the nuclear pore complex (NPC)	genetic	1	1	1	Dosage Rescue
AOS1	YPR180W	Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Uba2p	genetic	1	1	1	Negative Genetic
ARO1	YDR127W	Pentafunctional arom protein	genetic	1	1	1	Negative Genetic
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	physical	1	1	1	Affinity Capture-MS
CDC11	YJR076C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Negative Genetic
CDC55	YGL190C	Regulatory subunit B of protein phosphatase 2A (PP2A)	genetic	1	1	1	Negative Genetic
NOG2	YNR053C	Putative GTPase	physical	1	1	1	Affinity Capture-MS
CTF18	YMR078C	Subunit of a complex with Ctf8p	physical	1	1	1	Co-purification
CTK1	YKL139W	Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I)	physical	1	1	1	Affinity Capture-MS
DCP1	YOL149W	Subunit of the Dcp1p-Dcp2p decapping enzyme complex	physical	1	1	1	Affinity Capture-Western
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	physical	1	1	1	Affinity Capture-MS
ERG13	YML126C	3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase	physical	1	1	1	Affinity Capture-MS
EMP24	YGL200C	Component of the p24 complex	physical	1	1	1	Affinity Capture-MS
ERP1	YAR002C-A	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-MS
FET5	YFL041W	Multicopper oxidase	physical	1	1	1	Affinity Capture-MS
GCN1	YGL195W	Positive regulator of the Gcn2p kinase activity	physical	1	1	1	Affinity Capture-MS
GGA2	YHR108W	Protein that regulates Arf1p, Arf2p to facilitate Golgi trafficking	physical	1	1	1	Affinity Capture-MS
GLY1	YEL046C	Threonine aldolase	physical	1	1	1	Affinity Capture-MS
HTB2	YBL002W	Histone H2B	physical	1	1	1	Affinity Capture-MS
ECM29	YHL030W	Scaffold protein	physical	1	1	1	Affinity Capture-MS
LAS17	YOR181W	Actin assembly factor	genetic	1	1	1	Negative Genetic
ENO2	YHR174W	Enolase II, a phosphopyruvate hydratase	genetic	1	1	1	Negative Genetic
GAL11	YOL051W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-MS
ADA2	YDR448W	Transcription coactivator	physical	1	1	1	Affinity Capture-MS
FBA1	YKL060C	Fructose 1,6-bisphosphate aldolase	physical	1	1	1	Affinity Capture-MS
MLH1	YMR167W	Protein required for mismatch repair in mitosis and meiosis	physical	1	1	1	Co-purification
EHD3	YDR036C	3-hydroxyisobutyryl-CoA hydrolase	physical	1	1	1	Affinity Capture-MS
MRPL35	YDR322W	Mitochondrial ribosomal protein of the large subunit	genetic	1	1	1	Negative Genetic
MRPL39	YML009C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-MS
MRPS16	YPL013C	Mitochondrial ribosomal protein of the small subunit	genetic	1	1	1	Negative Genetic
MSH2	YOL090W	Protein that binds to DNA mismatches	genetic	1	1	1	Negative Genetic
MAM33	YIL070C	Acidic protein of the mitochondrial matrix	physical	1	1	1	Affinity Capture-MS
NMD3	YHR170W	Protein involved in nuclear export of the large ribosomal subunit	physical	1	1	1	Affinity Capture-MS
NSP1	YJL041W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
NUP116	YMR047C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Reconstituted Complex
NUP159	YIL115C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
APM1	YPL259C	Mu1-like medium subunit of the AP-1 complex	physical	1	1	1	Affinity Capture-MS
PGK1	YCR012W	3-phosphoglycerate kinase	physical	1	1	1	Affinity Capture-Western
PRP4	YPR178W	Splicing factor	physical	1	1	1	Affinity Capture-Western
NAB6	YML117W	Putative RNA-binding protein	physical	1	1	1	Affinity Capture-MS
MRPL6	YHR147C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-MS
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	genetic	1	1	1	Negative Genetic
DBP2	YNL112W	ATP-dependent RNA helicase of the DEAD-box protein family	physical	1	1	1	Affinity Capture-MS
PGI1	YBR196C	Glycolytic enzyme phosphoglucose isomerase	physical	1	1	1	Affinity Capture-MS
NUP84	YDL116W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-MS
RET3	YPL010W	Zeta subunit of the coatomer complex (COPI)	physical	1	1	1	Affinity Capture-MS
SEC26	YDR238C	Essential beta-coat protein of the COPI coatomer	physical	1	1	1	Affinity Capture-MS
ANP1	YEL036C	Subunit of the alpha-1,6 mannosyltransferase complex	physical	1	1	1	Affinity Capture-MS
MNN10	YDR245W	Subunit of a Golgi mannosyltransferase complex	physical	1	1	1	Affinity Capture-MS
SEC63	YOR254C	Essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-MS
SEC7	YDR170C	Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors	physical	1	1	1	Affinity Capture-MS
CDC25	YLR310C	Membrane bound guanine nucleotide exchange factor	physical	1	1	1	Affinity Capture-Western
CDC25	YLR310C	Membrane bound guanine nucleotide exchange factor	genetic	1	1	1	Negative Genetic
LSB3	YFR024C-A	Protein containing a C-terminal SH3 domain	physical	1	1	1	Affinity Capture-MS
SLY1	YDR189W	Hydrophilic protein involved in ER/Golgi vesicle trafficking	physical	1	1	1	Affinity Capture-MS
CCT8	YJL008C	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-MS
SMD2	YLR275W	Core Sm protein Sm D2	genetic	1	1	1	Negative Genetic
SAK1	YER129W	Upstream serine/threonine kinase for the SNF1 complex	physical	1	1	1	Affinity Capture-MS
HFI1	YPL254W	Adaptor protein required for structural integrity of the SAGA complex	physical	1	1	1	Affinity Capture-MS
MLP1	YKR095W	Myosin-like protein associated with the nuclear envelope	physical	1	1	1	Affinity Capture-MS
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-MS
MGA2	YIR033W	ER membrane protein involved in regulation of OLE1 transcription	physical	1	1	1	Affinity Capture-MS
RBG1	YAL036C	Member of the DRG family of GTP-binding proteins	physical	1	1	1	Affinity Capture-Western
BCY1	YIL033C	Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA)	physical	1	1	1	Affinity Capture-MS
GLN1	YPR035W	Glutamine synthetase (GS)	genetic	1	1	1	Negative Genetic
SKN1	YGR143W	Protein involved in sphingolipid biosynthesis	physical	1	1	1	Affinity Capture-MS
HSE1	YHL002W	Subunit of the endosomal Vps27p-Hse1p complex	physical	1	1	1	Affinity Capture-MS
BRO1	YPL084W	Cytoplasmic class E vacuolar protein sorting (VPS) factor	physical	1	1	1	Affinity Capture-MS
PIN4	YBL051C	Protein involved in G2/M phase progression and response to DNA damage	physical	1	1	1	Affinity Capture-MS
BNA3	YJL060W	Kynurenine aminotransferase	physical	1	1	1	Affinity Capture-MS
LYS9	YNR050C	Saccharopine dehydrogenase (NADP+, L-glutamate-forming)	physical	1	1	1	Affinity Capture-MS
EGD2	YHR193C	Alpha subunit of the nascent polypeptide-associated complex (NAC)	genetic	1	1	1	Phenotypic Enhancement
IRA2	YOL081W	GTPase-activating protein	physical	1	1	1	Affinity Capture-MS
CAF20	YOR276W	Phosphoprotein of the mRNA cap-binding complex	physical	1	1	1	Affinity Capture-MS
ASA1	YPR085C	Subunit of the ASTRA complex, involved in chromatin remodeling	genetic	1	1	1	Positive Genetic
AAC3	YBR085W	Mitochondrial inner membrane ADP/ATP translocator	genetic	1	1	1	Negative Genetic
ARF1	YDL192W	ADP-ribosylation factor	physical	1	1	1	Affinity Capture-MS
IDH1	YNL037C	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	1	1	1	Affinity Capture-MS
SDH2	YLL041C	Iron-sulfur protein subunit of succinate dehydrogenase	physical	1	1	1	Affinity Capture-MS
MGE1	YOR232W	Mitochondrial matrix cochaperone	physical	1	1	1	Reconstituted Complex
GSP2	YOR185C	GTP binding protein (mammalian Ranp homolog)	physical	1	1	1	Affinity Capture-MS
GSP1	YLR293C	Ran GTPase	physical	1	1	1	Affinity Capture-MS
GSF2	YML048W	Endoplasmic reticulum (ER) localized integral membrane protein	physical	1	1	1	Affinity Capture-MS
POR1	YNL055C	Mitochondrial porin (voltage-dependent anion channel)	genetic	1	1	1	Negative Genetic
RVS161	YCR009C	Amphiphysin-like lipid raft protein	physical	1	1	1	Affinity Capture-MS
GID7	YCL039W	Subunit of GID Complex that binds directly to central component Vid30p	physical	1	1	1	Affinity Capture-MS
EGD1	YPL037C	Subunit beta1 of the nascent polypeptide-associated complex (NAC)	genetic	1	1	1	Phenotypic Enhancement
DIP5	YPL265W	Dicarboxylic amino acid permease	physical	1	1	1	Affinity Capture-MS
HXT7	YDR342C	High-affinity glucose transporter	physical	1	1	1	Affinity Capture-MS
ATG11	YPR049C	Adapter protein for pexophagy and the Cvt targeting pathway	physical	1	1	1	Affinity Capture-MS
AYR1	YIL124W	Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase	physical	1	1	1	Affinity Capture-MS
OM45	YIL136W	Mitochondrial outer membrane protein of unknown function	physical	1	1	1	Affinity Capture-MS
PBR1	YNL181W	Putative oxidoreductase	physical	1	1	1	Affinity Capture-MS
KRE6	YPR159W	Glucosyl hydrolase required for beta-1,6-glucan biosynthesis	physical	1	1	1	Affinity Capture-MS
SMC6	YLR383W	Subunit of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-MS
ADH4	YGL256W	Alcohol dehydrogenase isoenzyme type IV	physical	1	1	1	Affinity Capture-MS
NUP49	YGL172W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
RVS167	YDR388W	Calmodulin-binding actin-associated protein	physical	1	1	1	Affinity Capture-MS
GYP5	YPL249C	GTPase-activating protein (GAP) for yeast Rab family members	physical	1	1	1	Affinity Capture-MS
HUL5	YGL141W	Multiubiquitin chain assembly factor (E4)	genetic	1	1	1	Phenotypic Suppression
SAH1	YER043C	S-adenosyl-L-homocysteine hydrolase	physical	1	1	1	Affinity Capture-MS
ERG6	YML008C	Delta(24)-sterol C-methyltransferase	physical	1	1	1	Affinity Capture-MS
NPA3	YJR072C	Member of the conserved GPN-loop GTPase family	physical	1	1	1	Affinity Capture-MS
INA1	YLR413W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	physical	1	1	1	Affinity Capture-MS
KIN2	YLR096W	S/T protein kinase	physical	1	1	1	Affinity Capture-MS
CWC21	YDR482C	Protein involved in RNA splicing by the spliceosome	genetic	1	1	1	Negative Genetic
AIP5	YFR016C	Protein that positively regulates actin assembly	physical	1	1	1	Affinity Capture-MS
HHO1	YPL127C	Histone H1, linker histone with roles in meiosis and sporulation	genetic	1	1	1	Synthetic Rescue
DPB11	YJL090C	DNA replication initiation protein	genetic	1	1	1	Negative Genetic
SGT1	YOR057W	Cochaperone protein	genetic	1	1	1	Negative Genetic
MNN9	YPL050C	Subunit of Golgi mannosyltransferase complex	physical	1	1	1	Affinity Capture-MS
NUS1	YDL193W	Forms dehydrodolichyl diphosphate synthase complex with RER2 or SRT1	physical	1	1	1	Affinity Capture-MS
LSC1	YOR142W	Alpha subunit of succinyl-CoA ligase	physical	1	1	1	Affinity Capture-MS
PCL6	YER059W	Pho85p cyclin of the Pho80p subfamily	physical	1	1	1	Two-hybrid
CLB2	YPR119W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-MS
PAP2	YOL115W	Non-canonical poly(A) polymerase	genetic	1	1	1	Negative Genetic
NUP2	YLR335W	Nucleoporin involved in nucleocytoplasmic transport	physical	1	1	1	Affinity Capture-MS
LSM8	YJR022W	Lsm (Like Sm) protein	genetic	1	1	1	Negative Genetic
SAN1	YDR143C	Ubiquitin-protein ligase	physical	1	1	1	Affinity Capture-MS
DCS2	YOR173W	m(7)GpppX pyrophosphatase regulator	physical	1	1	1	Affinity Capture-MS
CSC1	YLR241W	Calcium permeable gated cation channel	physical	1	1	1	Affinity Capture-MS
FMP10	YER182W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
PMI40	YER003C	Mannose-6-phosphate isomerase	genetic	1	1	1	Negative Genetic
CKI1	YLR133W	Choline kinase	physical	1	1	1	Affinity Capture-MS
DAP1	YPL170W	Heme-binding protein	physical	1	1	1	Affinity Capture-MS
PEX15	YOL044W	Tail-anchored type II integral peroxisomal membrane protein	physical	1	1	1	Affinity Capture-MS
IGO1	YNL157W	Protein required for initiation of G0 program	physical	1	1	1	Affinity Capture-MS
JJJ1	YNL227C	Co-chaperone that stimulates the ATPase activity of Ssa1p	physical	1	1	1	Reconstituted Complex
ASI3	YNL008C	Subunit of the inner nuclear membrane Asi ubiquitin ligase complex	physical	1	1	1	Affinity Capture-MS
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	physical	1	1	1	Affinity Capture-MS
PEX29	YDR479C	ER-resident protein involved in peroxisomal biogenesis	physical	1	1	1	Affinity Capture-MS
CLN3	YAL040C	G1 cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-Western
FIG1	YBR040W	Integral membrane protein required for efficient mating	genetic	1	1	1	Negative Genetic
BIT61	YJL058C	Subunit of TORC2 membrane-associated complex	physical	1	1	1	Reconstituted Complex
MOB2	YFL034C-B	Activator of Cbk1p kinase	genetic	1	1	1	Negative Genetic
NDC80	YIL144W	Component of the kinetochore-associated Ndc80 complex	physical	1	1	1	Affinity Capture-Western
PCL2	YDL127W	Cyclin, interacts with cyclin-dependent kinase Pho85p	physical	1	1	1	Two-hybrid
PKC1	YBL105C	Protein serine/threonine kinase	genetic	1	1	1	Negative Genetic
ATG27	YJL178C	Type I membrane protein involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-MS
SEC10	YLR166C	Essential 100kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-MS
SNA3	YJL151C	Protein involved in efficient MVB sorting of proteins to the vacuole	physical	1	1	1	Affinity Capture-MS
PEX14	YGL153W	Central component of the peroxisomal importomer complex	physical	1	1	1	Affinity Capture-MS
PRM9	YAR031W	Pheromone-regulated protein	physical	1	1	1	Affinity Capture-MS
ADP1	YCR011C	Putative ATP-dependent permease of the ABC transporter family	physical	1	1	1	Affinity Capture-MS
ADY3	YDL239C	Protein required for spore wall formation	physical	1	1	1	Affinity Capture-MS
FIS1	YIL065C	Protein involved in mitochondrial fission and peroxisome abundance	physical	1	1	1	Affinity Capture-MS
ESL1	YIL151C	hEST1A/B (SMG5/6)-like protein	physical	1	1	1	Affinity Capture-MS
MDY2	YOL111C	Protein involved in inserting tail-anchored proteins into ER membranes	physical	1	1	1	Affinity Capture-MS
PEX13	YLR191W	Peroxisomal importomer complex component	physical	1	1	1	Affinity Capture-MS
RPS8A	YBL072C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS17A	YML024W	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	1	1	1	Affinity Capture-MS
RPS7A	YOR096W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS22A	YJL190C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
BFR1	YOR198C	Component of mRNP complexes associated with polyribosomes	physical	1	1	1	Affinity Capture-RNA
CLC1	YGR167W	Clathrin light chain	physical	1	1	1	Affinity Capture-MS
CTK2	YJL006C	Beta subunit of C-terminal domain kinase I (CTDK-I)	physical	1	1	1	Affinity Capture-MS
MYO3	YKL129C	One of two type I myosins	physical	1	1	1	Affinity Capture-MS
NYV1	YLR093C	v-SNARE component of the vacuolar SNARE complex	physical	1	1	1	Affinity Capture-MS
SEC15	YGL233W	Essential 113 kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-MS
SEC20	YDR498C	Membrane glycoprotein v-SNARE	physical	1	1	1	Affinity Capture-MS
SEC20	YDR498C	Membrane glycoprotein v-SNARE	genetic	1	1	1	Positive Genetic
SEC61	YLR378C	Conserved ER protein translocation channel	physical	1	1	1	Affinity Capture-MS
SNC1	YAL030W	Vesicle membrane receptor protein (v-SNARE)	physical	1	1	1	Affinity Capture-MS
SIP5	YMR140W	Protein of unknown function	genetic	1	1	1	Phenotypic Suppression
SSN8	YNL025C	Cyclin-like component of RNA polymerase II holoenzyme	physical	1	1	1	Affinity Capture-Western
WHI3	YNL197C	RNA binding protein that modulates mRNA stability	physical	1	1	1	Affinity Capture-Western
SSA3	YBL075C	ATPase involved in protein folding and the response to stress	physical	1	1	1	Affinity Capture-Western
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-MS
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	genetic	1	1	1	Phenotypic Suppression
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	genetic	1	1	1	Dosage Lethality
TIF6	YPR016C	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-MS
YKE2	YLR200W	Subunit of the heterohexameric Gim/prefoldin protein complex	genetic	1	1	1	Synthetic Growth Defect
UBP3	YER151C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-MS
TMA46	YOR091W	Protein of unknown function that associates with translating ribosomes	physical	1	1	1	Affinity Capture-Western
TAF5	YBR198C	Subunit (90 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-MS
THP1	YOL072W	Nuclear pore-associated protein	physical	1	1	1	Affinity Capture-MS
UIP3	YAR027W	Putative integral membrane protein of unknown function	physical	1	1	1	Affinity Capture-MS
YBR287W	YBR287W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YCR043C	YCR043C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
YET3	YDL072C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
UBX3	YDL091C	Clathrin-coated vesicle component, regulator of endocytosis	physical	1	1	1	Affinity Capture-MS
VCX1	YDL128W	Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity	physical	1	1	1	Affinity Capture-MS
YDL206W	YDL206W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
VPS54	YDR027C	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-MS
TMN2	YDR107C	Protein with a role in cellular adhesion and filamentous growth	physical	1	1	1	Affinity Capture-MS
YPQ2	YDR352W	Putative vacuolar membrane transporter for cationic amino acids	physical	1	1	1	Affinity Capture-MS
TRS120	YDR407C	Component of transport protein particle (TRAPP) complex II	physical	1	1	1	Affinity Capture-MS
VPS52	YDR484W	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-MS
YEF1	YEL041W	ATP-NADH kinase	physical	1	1	1	Affinity Capture-MS
YEL077C	YEL077C	Helicase-like protein encoded within the telomeric Y' element	physical	1	1	1	Affinity Capture-MS
YPT31	YER031C	Rab family GTPase	physical	1	1	1	Affinity Capture-MS
TSC11	YER093C	Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p)	physical	1	1	1	Affinity Capture-MS
YER158C	YER158C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
VTC2	YFL004W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Affinity Capture-MS
YFR006W	YFR006W	Putative X-Pro aminopeptidase	physical	1	1	1	Affinity Capture-MS
STT3	YGL022W	Catalytic subunit of the oligosaccharyltransferase complex of the ER l	physical	1	1	1	Affinity Capture-MS
VAM7	YGL212W	Vacuolar SNARE protein	physical	1	1	1	Affinity Capture-MS
VRG4	YGL225W	Golgi GDP-mannose transporter	physical	1	1	1	Affinity Capture-MS
YGR016W	YGR016W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
VMA21	YGR105W	Integral membrane protein required for V-ATPase function	physical	1	1	1	Affinity Capture-MS
VOA1	YGR106C	ER protein that functions in assembly of the V0 sector of V-ATPase	physical	1	1	1	Affinity Capture-MS
YHB1	YGR234W	Nitric oxide oxidoreductase	physical	1	1	1	Affinity Capture-MS
YOR1	YGR281W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
VMR1	YHL035C	Vacuolar membrane protein	physical	1	1	1	Affinity Capture-MS
VID28	YIL017C	GID Complex subunit, serves as adaptor for regulatory subunit Vid24p	physical	1	1	1	Affinity Capture-MS
YJL070C	YJL070C	Putative metallo-dependent hydrolase superfamily protein	physical	1	1	1	Affinity Capture-MS
TOK1	YJL093C	Outward-rectifier potassium channel of the plasma membrane	physical	1	1	1	Affinity Capture-MS
VPS35	YJL154C	Endosomal subunit of membrane-associated retromer complex	physical	1	1	1	Affinity Capture-MS
VBA5	YKR105C	Plasma membrane protein of the Major Facilitator Superfamily (MFS)	physical	1	1	1	Affinity Capture-MS
YEH1	YLL012W	Steryl ester hydrolase	physical	1	1	1	Affinity Capture-MS
YBT1	YLL048C	Transporter of the ATP-binding cassette (ABC) family	physical	1	1	1	Affinity Capture-MS
THI73	YLR004C	Putative plasma membrane permease	physical	1	1	1	Affinity Capture-MS
VID22	YLR373C	G-quadruplex (G4) DNA binding protein	physical	1	1	1	Affinity Capture-MS
VAC14	YLR386W	Enzyme regulator	physical	1	1	1	Affinity Capture-MS
YML002W	YML002W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
UBX2	YML013W	Bridging factor involved in ER-associated protein degradation (ERAD)	physical	1	1	1	Affinity Capture-MS
YMD8	YML038C	Putative nucleotide sugar transporter	physical	1	1	1	Affinity Capture-MS
VPS9	YML097C	Guanine nucleotide exchange factor (GEF) and ubiquitin receptor	physical	1	1	1	Affinity Capture-MS
SWP1	YMR149W	Delta subunit of the oligosaccharyl transferase glycoprotein complex	physical	1	1	1	Affinity Capture-MS
TRS130	YMR218C	Component of transport protein particle (TRAPP) complex II	physical	1	1	1	Affinity Capture-MS
TCB2	YNL087W	ER protein involved in ER-plasma membrane tethering	physical	1	1	1	Affinity Capture-MS
TOM70	YNL121C	Component of the TOM (translocase of outer membrane) complex	genetic	1	1	1	Phenotypic Suppression
YNL190W	YNL190W	Hydrophilin essential in desiccation-rehydration process	physical	1	1	1	Affinity Capture-MS
YNR048W	YNR048W	Potential noncatalytic subunit for phospholipid translocase Dnf3p	physical	1	1	1	Affinity Capture-MS
YOL075C	YOL075C	Putative ABC transporter	physical	1	1	1	Affinity Capture-MS
ZEO1	YOL109W	Peripheral membrane protein of the plasma membrane	physical	1	1	1	Affinity Capture-MS
VAM3	YOR106W	Syntaxin-like vacuolar t-SNARE	physical	1	1	1	Affinity Capture-MS
TRE2	YOR256C	Transferrin receptor-like protein	physical	1	1	1	Affinity Capture-MS
TPO4	YOR273C	Polyamine transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-MS
TIM18	YOR297C	Component of the mitochondrial TIM22 complex	physical	1	1	1	Affinity Capture-MS
VTC3	YPL019C	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Affinity Capture-MS
TRE1	YPL176C	Transferrin receptor-like protein	physical	1	1	1	Affinity Capture-MS
TCO89	YPL180W	Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p)	physical	1	1	1	Affinity Capture-MS
YIG1	YPL201C	Protein that interacts with glycerol 3-phosphatase	physical	1	1	1	Affinity Capture-MS
SSO1	YPL232W	Plasma membrane t-SNARE	physical	1	1	1	Affinity Capture-MS
VMA11	YPL234C	Vacuolar ATPase V0 domain subunit c'	physical	1	1	1	Affinity Capture-MS
YOP1	YPR028W	Reticulon-interacting protein	physical	1	1	1	Affinity Capture-MS
SYT1	YPR095C	Guanine nucleotide exchange factor (GEF) for Arf proteins	physical	1	1	1	Affinity Capture-MS
YPR114W	YPR114W	Protein distantly similar to ceramide synthases, Lag1p and Lac1p	physical	1	1	1	Affinity Capture-MS
TPO3	YPR156C	Polyamine transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-MS
STE50	YCL032W	Adaptor protein for various signaling pathways	physical	1	1	1	Two-hybrid
UBR1	YGR184C	E3 ubiquitin ligase (N-recognin)	physical	1	1	1	Affinity Capture-Western
ULP1	YPL020C	Protease that specifically cleaves Smt3p protein conjugates	physical	1	1	1	PCA
TFB4	YPR056W	Subunit of TFIIH complex	physical	1	1	1	Affinity Capture-MS
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Affinity Capture-MS
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	physical	1	1	1	Affinity Capture-MS
TOM20	YGR082W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Reconstituted Complex
VID24	YBR105C	GID Complex regulatory subunit	physical	1	1	1	Affinity Capture-MS
ULP2	YIL031W	Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins	physical	1	1	1	Affinity Capture-MS
TIM44	YIL022W	Essential component of the TIM23 complex	physical	1	1	1	Affinity Capture-Western
VTS1	YOR359W	Flap-structured DNA-binding and RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
VAM6	YDL077C	Guanine nucleotide exchange factor for the GTPase Gtr1p	physical	1	1	1	Affinity Capture-MS
SSP2	YOR242C	Sporulation specific protein that localizes to the spore wall	physical	1	1	1	Affinity Capture-MS
YIM1	YMR152W	Aldehyde reductase	physical	1	1	1	Affinity Capture-MS
TMA22	YJR014W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
SUI2	YJR007W	Alpha subunit of the translation initiation factor eIF2	physical	1	1	1	Affinity Capture-MS
STH1	YIL126W	ATPase component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-MS
TMT1	YER175C	Trans-aconitate methyltransferase	physical	1	1	1	Affinity Capture-MS
TOA1	YOR194C	TFIIA large subunit	physical	1	1	1	Affinity Capture-MS
SSO2	YMR183C	Plasma membrane t-SNARE	physical	1	1	1	Affinity Capture-MS
YNL208W	YNL208W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
TIM10	YHR005C-A	Essential protein of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-MS
YMR196W	YMR196W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
SUB2	YDL084W	Component of the TREX complex required for nuclear mRNA export	physical	1	1	1	Affinity Capture-MS
YOR289W	YOR289W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
YDL157C	YDL157C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
YBR085C-A	YBR085C-A	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YRF1-5	YLR467W	Helicase encoded by the Y' element of subtelomeric regions	physical	1	1	1	Affinity Capture-MS
THR4	YCR053W	Threonine synthase	physical	1	1	1	Affinity Capture-MS
TRR2	YHR106W	Mitochondrial thioredoxin reductase	physical	1	1	1	Affinity Capture-MS
TIF11	YMR260C	Translation initiation factor eIF1A	physical	1	1	1	Affinity Capture-MS
SSP120	YLR250W	Protein packaged into COPII vesicles for ER to Golgi trafficking	physical	1	1	1	Affinity Capture-MS
YGR111W	YGR111W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
TIM11	YDR322C-A	Subunit e of mitochondrial F1F0-ATPase	physical	1	1	1	Affinity Capture-MS
YVH1	YIR026C	Dual specificity protein phosphatase	physical	1	1	1	Affinity Capture-MS
YLR179C	YLR179C	Protein of unknown function with similarity to Tfs1p	physical	1	1	1	Affinity Capture-MS
TUB4	YLR212C	Gamma-tubulin	genetic	1	1	1	Synthetic Lethality
YKU70	YMR284W	Subunit of the telomeric Ku complex (Yku70p-Yku80p)	genetic	1	1	1	Negative Genetic
TPK3	YKL166C	cAMP-dependent protein kinase catalytic subunit	genetic	1	1	1	Phenotypic Suppression
SSM4	YIL030C	Membrane-embedded ubiquitin-protein ligase and retrotranslocase	genetic	1	1	1	Phenotypic Suppression
TFG2	YGR005C	TFIIF (Transcription Factor II) middle subunit	genetic	1	1	1	Negative Genetic
VHT1	YGR065C	High-affinity plasma membrane H+-biotin (vitamin H) symporter	genetic	1	1	1	Negative Genetic
TAO3	YIL129C	Component of the RAM signaling network	genetic	1	1	1	Negative Genetic
THI80	YOR143C	Thiamine pyrophosphokinase	genetic	1	1	1	Negative Genetic
YJL107C	YJL107C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YMR030W-A	YMR030W-A	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YPT11	YNL304W	Rab GTPase	genetic	1	1	1	Negative Genetic
YPR159C-A	YPR159C-A	Protein of unknown function	genetic	1	1	1	Negative Genetic
TPK2	YPL203W	cAMP-dependent protein kinase catalytic subunit	genetic	1	1	1	Phenotypic Suppression
JNM1	YMR294W	Component of the yeast dynactin complex	physical	1	1	1	Affinity Capture-MS
SEC5	YDR166C	Essential 107kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-MS
SPC110	YDR356W	Inner plaque spindle pole body (SPB) component	physical	1	1	1	Co-purification
MRPS9	YBR146W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-MS
HAP1	YLR256W	Zinc finger transcription factor	physical	1	1	1	Affinity Capture-Western
OST4	YDL232W	Subunit of the oligosaccharyltransferase complex of the ER lumen	genetic	1	1	1	Negative Genetic
EMP47	YFL048C	Integral membrane component of ER-derived COPII-coated vesicles	physical	1	1	1	Affinity Capture-MS
SIL1	YOL031C	Nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p	physical	1	1	1	Affinity Capture-Western
PDR17	YNL264C	Phosphatidylinositol transfer protein (PITP)	physical	1	1	1	Affinity Capture-MS
NUP100	YKL068W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
ERG25	YGR060W	C-4 methyl sterol oxidase	physical	1	1	1	Affinity Capture-MS
ESC1	YMR219W	Protein involved in telomeric silencing	physical	1	1	1	Affinity Capture-MS
GTS1	YGL181W	Protein involved in Arf3p regulation and in transcription regulation	genetic	1	1	1	Dosage Rescue
JEM1	YJL073W	DnaJ-like chaperone required for nuclear membrane fusion during mating	physical	1	1	1	Affinity Capture-MS
HFA1	YMR207C	Mitochondrial acetyl-coenzyme A carboxylase	physical	1	1	1	Affinity Capture-MS
COQ1	YBR003W	Hexaprenyl pyrophosphate synthetase	physical	1	1	1	Affinity Capture-MS
BPT1	YLL015W	ABC type transmembrane transporter of MRP/CFTR family	physical	1	1	1	Affinity Capture-MS
PDR5	YOR153W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
DJP1	YIR004W	ER-associated chaperone involved in protein targeting	physical	1	1	1	Affinity Capture-MS
SIP3	YNL257C	Putative sterol transfer protein	physical	1	1	1	Affinity Capture-MS
SNZ1	YMR096W	Subunit of a two-component pyridoxal-5'-phosphate synthase	physical	1	1	1	Affinity Capture-MS
OSH3	YHR073W	Member of an oxysterol-binding protein family	physical	1	1	1	Affinity Capture-MS
NUP42	YDR192C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
ATP10	YLR393W	Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-MS
DFG5	YMR238W	Putative mannosidase	physical	1	1	1	Affinity Capture-MS
PFY1	YOR122C	Profilin	physical	1	1	1	Affinity Capture-MS
FUS1	YCL027W	Membrane protein localized to the shmoo tip	physical	1	1	1	Affinity Capture-MS
NCP1	YHR042W	NADP-cytochrome P450 reductase	physical	1	1	1	Affinity Capture-MS
RPL25	YOL127W	Ribosomal 60S subunit protein L25	physical	1	1	1	Affinity Capture-MS
RPL31A	YDL075W	Ribosomal 60S subunit protein L31A	physical	1	1	1	Affinity Capture-MS
CPR7	YJR032W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	genetic	1	1	1	Phenotypic Enhancement
HRD1	YOL013C	Ubiquitin-protein ligase involved in ER-associated degradation (ERAD)	physical	1	1	1	Affinity Capture-MS
ERV29	YGR284C	Protein localized to COPII-coated vesicles	physical	1	1	1	Affinity Capture-MS
BSD2	YBR290W	Heavy metal ion homeostasis protein	physical	1	1	1	Affinity Capture-MS
PAM16	YJL104W	Subunit of the import motor (PAM complex)	physical	1	1	1	Reconstituted Complex
PAM16	YJL104W	Subunit of the import motor (PAM complex)	genetic	1	1	1	Negative Genetic
HOC1	YJR075W	Alpha-1,6-mannosyltransferase	physical	1	1	1	Affinity Capture-MS
MNN11	YJL183W	Subunit of a Golgi mannosyltransferase complex	physical	1	1	1	Affinity Capture-MS
BCS1	YDR375C	Protein translocase and chaperone required for Complex III assembly	physical	1	1	1	Affinity Capture-MS
OXA1	YER154W	Mitochondrial inner membrane insertase	physical	1	1	1	Affinity Capture-MS
PMT1	YDL095W	Protein O-mannosyltransferase of the ER membrane	physical	1	1	1	Affinity Capture-MS
PXA1	YPL147W	Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa2p	physical	1	1	1	Affinity Capture-MS
NVJ1	YHR195W	Nuclear envelope protein	physical	1	1	1	Affinity Capture-MS
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Positive Genetic
NUP188	YML103C	Subunit of the inner ring of the nuclear pore complex (NPC)	genetic	1	1	1	Phenotypic Suppression
MID1	YNL291C	Stretch-activated Ca2+-permeable cation channel	physical	1	1	1	Affinity Capture-MS
ERV14	YGL054C	COPII-coated vesicle protein	physical	1	1	1	Affinity Capture-MS
ATM1	YMR301C	Mitochondrial inner membrane ATP-binding cassette (ABC) transporter	genetic	1	1	1	Negative Genetic
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	genetic	1	1	1	Phenotypic Suppression
PDR12	YPL058C	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
RPS20	YHL015W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
INN1	YNL152W	Essential protein that associates with contractile actomyosin ring	genetic	1	1	1	Negative Genetic
PER33	YLR064W	Protein that localizes to the endoplasmic reticulum	physical	1	1	1	Affinity Capture-MS
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	physical	1	1	1	Affinity Capture-MS
RPS14A	YCR031C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
MLS1	YNL117W	Malate synthase, enzyme of the glyoxylate cycle	physical	1	1	1	Affinity Capture-MS
RPL19B	YBL027W	Ribosomal 60S subunit protein L19B	physical	1	1	1	Affinity Capture-MS
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	physical	1	1	1	Affinity Capture-MS
ORM2	YLR350W	Protein that mediates sphingolipid homeostasis	physical	1	1	1	Affinity Capture-MS
MIT1	YEL007W	Transcriptional regulator of pseudohyphal growth	physical	1	1	1	Affinity Capture-MS
REV1	YOR346W	Deoxycytidyl transferase	physical	1	1	1	Affinity Capture-Western
MDM1	YML104C	PtdIns-3-P binding protein that tethers the ER to vacuoles at NVJs	physical	1	1	1	Affinity Capture-MS
BUG1	YDL099W	Cis-golgi localized protein involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-MS
POM152	YMR129W	Glycoprotein subunit of transmembrane ring of nuclear pore complex	physical	1	1	1	Affinity Capture-MS
SPT23	YKL020C	ER membrane protein involved in regulation of OLE1 transcription	physical	1	1	1	Affinity Capture-MS
CIT1	YNR001C	Mitochondrial citrate synthase	physical	1	1	1	Affinity Capture-MS
HSP31	YDR533C	Methylglyoxalase that converts methylglyoxal to D-lactate	genetic	1	1	1	Phenotypic Suppression
ALG1	YBR110W	Mannosyltransferase	physical	1	1	1	Affinity Capture-MS
ORC6	YHR118C	Subunit of the origin recognition complex (ORC)	genetic	1	1	1	Positive Genetic
PDR11	YIL013C	ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
CST26	YBR042C	Acyltransferase	physical	1	1	1	Affinity Capture-MS
PSG1	YKL077W	Protein that promotes the transport and maturation of Pma1 with Exp1	physical	1	1	1	Affinity Capture-MS
CAN1	YEL063C	Plasma membrane arginine permease	physical	1	1	1	Affinity Capture-MS
ESBP6	YNL125C	Protein with similarity to monocarboxylate permeases	physical	1	1	1	Affinity Capture-MS
ANT1	YPR128C	Peroxisomal adenine nucleotide transporter	physical	1	1	1	Affinity Capture-MS
SEC8	YPR055W	Essential 121 kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-MS
SPC105	YGL093W	Subunit of a kinetochore-microtubule binding complex	physical	1	1	1	Reconstituted Complex
CUE1	YMR264W	Ubiquitin-binding protein	physical	1	1	1	Affinity Capture-MS
DIC1	YLR348C	Mitochondrial dicarboxylate carrier	physical	1	1	1	Affinity Capture-MS
BTT1	YDR252W	Heterotrimeric nascent polypeptide-associated complex beta3 subunit	genetic	1	1	1	Phenotypic Enhancement
MBA1	YBR185C	Membrane-associated mitochondrial ribosome receptor	physical	1	1	1	Affinity Capture-MS
AVT1	YJR001W	Vacuolar transporter	physical	1	1	1	Affinity Capture-MS
MSS4	YDR208W	Phosphatidylinositol-4-phosphate 5-kinase	physical	1	1	1	Affinity Capture-MS
PAM1	YDR251W	Essential protein of unknown function	physical	1	1	1	Affinity Capture-MS
ICL1	YER065C	Isocitrate lyase	physical	1	1	1	Affinity Capture-MS
SEM1	YDR363W-A	19S proteasome regulatory particle lid subcomplex component	genetic	1	1	1	Synthetic Growth Defect
FPR2	YDR519W	Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase)	physical	1	1	1	Affinity Capture-MS
IRC22	YEL001C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
DDR48	YMR173W	DNA damage-responsive protein	physical	1	1	1	Affinity Capture-MS
ATG32	YIL146C	Mitochondrial outer membrane protein required to initiate mitophagy	physical	1	1	1	Affinity Capture-MS
PPT1	YGR123C	Protein serine/threonine phosphatase	genetic	1	1	1	Phenotypic Suppression
NOP19	YGR251W	Ribosome biogenesis factor	genetic	1	1	1	Negative Genetic
MSC7	YHR039C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
PPX1	YHR201C	Exopolyphosphatase	genetic	1	1	1	Negative Genetic
PDR10	YOR328W	ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
ETR1	YBR026C	2-enoyl thioester reductase	physical	1	1	1	Affinity Capture-MS
ADH7	YCR105W	NADPH-dependent medium chain alcohol dehydrogenase	physical	1	1	1	Affinity Capture-MS
OLE1	YGL055W	Delta(9) fatty acid desaturase	physical	1	1	1	Affinity Capture-MS
INA17	YPL099C	F1F0 ATPase synthase peripheral stalk assembly factor	genetic	1	1	1	Negative Genetic
PDR15	YDR406W	Plasma membrane ATP binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
ALD2	YMR170C	Cytoplasmic aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-MS
NAM2	YLR382C	Mitochondrial leucyl-tRNA synthetase	physical	1	1	1	Affinity Capture-MS
SEC14	YMR079W	Phosphatidylinositol/phosphatidylcholine transfer protein	genetic	1	1	1	Negative Genetic
PKR1	YMR123W	V-ATPase assembly factor	physical	1	1	1	Affinity Capture-MS
POC4	YPL144W	Component of a heterodimeric Poc4p-Irc25p chaperone	genetic	1	1	1	Dosage Rescue
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	physical	1	1	1	Affinity Capture-MS
GLN4	YOR168W	Glutamine tRNA synthetase	physical	1	1	1	Affinity Capture-MS
MCY1	YGR012W	Putative cysteine synthase	physical	1	1	1	Affinity Capture-MS
AHC2	YCR082W	Component of the ADA histone acetyltransferase complex	physical	1	1	1	Affinity Capture-MS
PST1	YDR055W	Cell wall protein that contains a putative GPI-attachment site	physical	1	1	1	Affinity Capture-MS
CWH41	YGL027C	Processing alpha glucosidase I	physical	1	1	1	Affinity Capture-MS
RPS9A	YPL081W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
IRC19	YLL033W	Protein of unknown function	genetic	1	1	1	Negative Genetic
ERP3	YDL018C	Protein with similarity to Emp24p and Erv25p	physical	1	1	1	Affinity Capture-MS
KTR6	YPL053C	Probable mannosylphosphate transferase	physical	1	1	1	Affinity Capture-MS
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
MRPL27	YBR282W	Mitochondrial ribosomal protein of the large subunit	genetic	1	1	1	Positive Genetic
NUP192	YJL039C	Essential subunit of inner ring of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-MS
OCA5	YHL029C	Cytoplasmic protein required for replication of Brome mosaic virus	genetic	1	1	1	Negative Genetic
RTT107	YHR154W	BRCA1 C-terminal domain protein needed for recovery from DNA damage	physical	1	1	1	Affinity Capture-MS
RPL26A	YLR344W	Ribosomal 60S subunit protein L26A	physical	1	1	1	Affinity Capture-MS
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS19A	YOL121C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
APJ1	YNL077W	Hsp40 chaperone with a role in SUMO-mediated protein degradation	physical	1	1	1	Affinity Capture-Western
HSP33	YOR391C	Possible chaperone and cysteine protease	genetic	1	1	1	Phenotypic Suppression
PCM1	YEL058W	Essential N-acetylglucosamine-phosphate mutase	physical	1	1	1	Affinity Capture-MS
PHO90	YJL198W	Low-affinity phosphate transporter	physical	1	1	1	Affinity Capture-MS
PHO91	YNR013C	Low-affinity vacuolar phosphate transporter	physical	1	1	1	Affinity Capture-MS
ORM1	YGR038W	Protein that mediates sphingolipid homeostasis	physical	1	1	1	Affinity Capture-MS
NSG1	YHR133C	Protein involved in regulation of sterol biosynthesis	physical	1	1	1	Affinity Capture-MS
PIB2	YGL023C	Phosphatidylinositol 3-phosphate binding protein	genetic	1	1	1	Negative Genetic
DDP1	YOR163W	Diadenosine and diphosphoinositol polyphosphate phosphatase	physical	1	1	1	Affinity Capture-MS
PAN5	YHR063C	2-dehydropantoate 2-reductase	physical	1	1	1	Affinity Capture-MS
SCD6	YPR129W	Repressor of translation initiation	physical	1	1	1	Affinity Capture-MS
SGE1	YPR198W	Plasma membrane multidrug transporter	physical	1	1	1	Affinity Capture-MS
RPS27A	YKL156W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
OM14	YBR230C	Mitochondrial outer membrane receptor for cytosolic ribosomes	physical	1	1	1	Affinity Capture-MS
COQ2	YNR041C	Para hydroxybenzoate polyprenyl transferase	genetic	1	1	1	Negative Genetic
CYC2	YOR037W	Mitochondrial peripheral inner membrane protein	physical	1	1	1	Affinity Capture-MS
MDM34	YGL219C	Mitochondrial component of the ERMES complex	physical	1	1	1	Affinity Capture-MS
MPS3	YJL019W	Nuclear envelope protein	physical	1	1	1	Affinity Capture-MS
PDR3	YBL005W	Transcriptional activator of the pleiotropic drug resistance network	physical	1	1	1	Affinity Capture-Western
PTR2	YKR093W	Integral membrane peptide transporter	physical	1	1	1	Affinity Capture-MS
SNQ2	YDR011W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
MUP1	YGR055W	High affinity methionine permease	physical	1	1	1	Affinity Capture-MS
MEP3	YPR138C	Ammonium permease of high capacity and low affinity	physical	1	1	1	Affinity Capture-MS
BAP2	YBR068C	High-affinity leucine permease	physical	1	1	1	Affinity Capture-MS
SHR3	YDL212W	Endoplasmic reticulum packaging chaperone	physical	1	1	1	Affinity Capture-MS
DPP1	YDR284C	Diacylglycerol pyrophosphate (DGPP) phosphatase	physical	1	1	1	Affinity Capture-MS
MDM32	YOR147W	Mitochondrial inner membrane protein with similarity to Mdm31p	physical	1	1	1	Affinity Capture-MS
ERS1	YCR075C	Protein involved in cystine transport	physical	1	1	1	Affinity Capture-MS
MSP1	YGR028W	Highly-conserved N-terminally anchored AAA-ATPase	physical	1	1	1	Affinity Capture-MS
LYP1	YNL268W	Lysine permease	physical	1	1	1	Affinity Capture-MS
CHO2	YGR157W	Phosphatidylethanolamine methyltransferase (PEMT)	physical	1	1	1	Affinity Capture-MS
DCW1	YKL046C	Putative mannosidase	physical	1	1	1	Affinity Capture-MS
OAC1	YKL120W	Mitochondrial inner membrane transporter	physical	1	1	1	Affinity Capture-MS
CCW12	YLR110C	Cell wall mannoprotein	physical	1	1	1	Affinity Capture-MS
SPC2	YML055W	Subunit of signal peptidase complex	physical	1	1	1	Affinity Capture-MS
BIG1	YHR101C	Integral membrane protein of the endoplasmic reticulum	physical	1	1	1	Affinity Capture-MS
NNR2	YKL151C	Widely-conserved NADHX dehydratase	physical	1	1	1	Affinity Capture-MS
ALG2	YGL065C	Mannosyltransferase in the N-linked glycosylation pathway	physical	1	1	1	Affinity Capture-MS
HSP32	YPL280W	Possible chaperone and cysteine protease	genetic	1	1	1	Phenotypic Suppression
COS10	YNR075W	Endosomal protein involved in turnover of plasma membrane proteins	physical	1	1	1	Affinity Capture-MS
GRX2	YDR513W	Cytoplasmic glutaredoxin	physical	1	1	1	Affinity Capture-MS
CTS1	YLR286C	Endochitinase	physical	1	1	1	Affinity Capture-MS
FKS3	YMR306W	Protein involved in spore wall assembly	physical	1	1	1	Affinity Capture-MS
DIE2	YGR227W	Dolichyl-phosphoglucose-dependent alpha-1,2-glucosyltransferase	physical	1	1	1	Affinity Capture-MS
ELO1	YJL196C	Elongase I, medium-chain acyl elongase	physical	1	1	1	Affinity Capture-MS
COX9	YDL067C	Subunit VIIa of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-MS
SAM50	YNL026W	Component of the Sorting and Assembly Machinery (SAM) complex	physical	1	1	1	Affinity Capture-MS
NCW1	YMR122W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
PIR3	YKL163W	O-glycosylated covalently-bound cell wall protein	genetic	1	1	1	Phenotypic Suppression
OPT1	YJL212C	Proton-coupled oligopeptide transporter of the plasma membrane	physical	1	1	1	Affinity Capture-MS
COX20	YDR231C	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-MS
SCW10	YMR305C	Cell wall protein with similarity to glucanases	physical	1	1	1	Affinity Capture-MS
MIC60	YKR016W	Component of the MICOS complex	physical	1	1	1	Affinity Capture-MS
MYG1	YER156C	Protein involved in mitochondrial function	physical	1	1	1	Proximity Label-MS
PCA1	YBR295W	Cadmium transporting P-type ATPase	physical	1	1	1	Affinity Capture-Western
NCE103	YNL036W	Carbonic anhydrase	physical	1	1	1	Affinity Capture-MS
CBP4	YGR174C	Mitochondrial protein required for assembly of cytochrome bc1 complex	physical	1	1	1	Affinity Capture-MS
MZM1	YDR493W	Protein required for assembly of the cytochrome bc(1) complex	physical	1	1	1	Affinity Capture-MS
IMP2	YMR035W	Catalytic subunit of mitochondrial inner membrane peptidase complex	genetic	1	1	1	Negative Genetic
KEI1	YDR367W	Component of inositol phosphorylceramide (IPC) synthase	physical	1	1	1	Affinity Capture-MS
GAS2	YLR343W	1,3-beta-glucanosyltransferase	physical	1	1	1	Affinity Capture-MS
PIC2	YER053C	Mitochondrial copper and phosphate carrier	physical	1	1	1	Affinity Capture-MS
PSD1	YNL169C	Phosphatidylserine decarboxylase of the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-MS
GPI8	YDR331W	Catalytic subunit of the ER membrane GPI transamidase complex	physical	1	1	1	Affinity Capture-MS
PMP2	YEL017C-A	Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p)	physical	1	1	1	Affinity Capture-MS
DGK1	YOR311C	Diacylglycerol kinase	physical	1	1	1	Affinity Capture-MS
PER1	YCR044C	Protein of the endoplasmic reticulum	physical	1	1	1	Affinity Capture-MS
MPM1	YJL066C	Mitochondrial intermembrane space protein of unknown function	physical	1	1	1	Affinity Capture-MS
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
MFM1	YPL060W	Mitochondrial inner membrane magnesium transporter	physical	1	1	1	Affinity Capture-MS
NCA2	YPR155C	Protein that regulates expression of Fo-F1 ATP synthase subunits	physical	1	1	1	Affinity Capture-MS
SCS3	YGL126W	Protein required for normal ER membrane biosynthesis in response to ER	physical	1	1	1	Affinity Capture-MS
NAT2	YGR147C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
RTT105	YER104W	Chaperone for Replication Protein A complex (RPA)	physical	1	1	1	Affinity Capture-MS
SEI1	YLR404W	Seipin involved in lipid droplet (LD) assembly	physical	1	1	1	Affinity Capture-MS
SFM1	YOR021C	SPOUT methyltransferase	physical	1	1	1	Affinity Capture-MS
SNA2	YDR525W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
QCR10	YHR001W-A	Subunit of the ubiqunol-cytochrome c oxidoreductase complex	physical	1	1	1	Affinity Capture-MS
MSH1	YHR120W	DNA-binding protein of the mitochondria	physical	1	1	1	Affinity Capture-MS
MNT3	YIL014W	Alpha-1,3-mannosyltransferase	physical	1	1	1	Affinity Capture-MS
SFC1	YJR095W	Mitochondrial succinate-fumarate transporter	physical	1	1	1	Affinity Capture-MS
SLS1	YLR139C	Mitochondrial membrane protein	physical	1	1	1	Affinity Capture-MS
NDI1	YML120C	NADH:ubiquinone oxidoreductase	physical	1	1	1	Affinity Capture-MS
SEC12	YNR026C	Guanine nucleotide exchange factor (GEF)	physical	1	1	1	Affinity Capture-MS
PDR18	YNR070W	Transporter of the ATP-binding cassette (ABC) family	physical	1	1	1	Affinity Capture-MS
PLB2	YMR006C	Phospholipase B (lysophospholipase) involved in lipid metabolism	genetic	1	1	1	Negative Genetic
SPF1	YEL031W	P-type ATPase, ion transporter of the ER membrane	physical	1	1	1	Affinity Capture-MS
GRX8	YLR364W	Glutaredoxin that employs a dithiol mechanism of catalysis	physical	1	1	1	Affinity Capture-MS
PEX9	YMR018W	Peroxisomal membrane signal receptor for peroxisomal matrix proteins	genetic	1	1	1	Negative Genetic