Standard name Systematic name Name description Description
TFB3 YDR460W Subunit of TFIIH and nucleotide excision repair factor 3 complexes Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit
Visualize the interactome of TFB3
Links to external databases:
  SGD   |   KEGG   |  

Cell cycle phase and timing of transcription peak

Cell cycle phase Time (min)
G1(P) 18

CYCLoPs localization & abundance

WT1 WT2 WT3
Mito 0.137 NaN NaN
Nucleolus 0.209 0.099 NaN
Nucleus 0.935 0.934 0.954

GFP localization & abundance

GFP localization GFP abundance
nucleus 3050

GO term count

Metabolism Cell cycle Cell division Signal transduction DNA replication
TFB3 4 0 0 0 0

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.
Standard name Systematic name Name description Type #Experiments #Methods #Publications Evidence
RAD3 YER171W 5' to 3' DNA helicase physical 14 6 10 Affinity Capture-MS, Affinity Capture-MS, Two-hybrid, Two-hybrid, Co-purification, Co-purification, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Co-crystal Structure, Co-purification, Affinity Capture-Western, Reconstituted Complex, Co-purification
KIN28 YDL108W Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly physical 10 6 9 Two-hybrid, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-crystal Structure, Co-purification, Reconstituted Complex
CCL1 YPR025C Cyclin partner of the cyclin-dependent kinase (CDK) Kin28p physical 10 5 9 Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Two-hybrid, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-crystal Structure, Co-purification
SSL1 YLR005W Subunit of the core form of RNA polymerase transcription factor TFIIH physical 7 5 6 Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Co-crystal Structure, Co-purification, Affinity Capture-Western, Reconstituted Complex
TFB4 YPR056W Subunit of TFIIH complex physical 7 4 5 Co-purification, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Co-crystal Structure, Co-purification
TFB1 YDR311W Subunit of TFIIH and nucleotide excision repair factor 3 complexes physical 6 5 5 Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Co-crystal Structure, Co-purification, Reconstituted Complex
SSL2 YIL143C Component of RNA polymerase transcription factor TFIIH holoenzyme physical 5 4 4 Affinity Capture-Western, Affinity Capture-Western, Co-crystal Structure, Co-purification, Reconstituted Complex
TFB2 YPL122C Subunit of TFIIH and nucleotide excision repair factor 3 complexes physical 4 3 3 Affinity Capture-Western, Affinity Capture-Western, Co-crystal Structure, Co-purification
FKH1 YIL131C Forkhead family transcription factor regulation 2 2 2 chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
SGS1 YMR190C RecQ family nucleolar DNA helicase genetic 2 2 2 Synthetic Lethality, Positive Genetic
RPO21 YDL140C RNA polymerase II largest subunit B220 regulation 2 1 2 protein kinase assay evidence, protein kinase assay evidence
ERG3 YLR056W C-5 sterol desaturase genetic 2 1 2 Negative Genetic, Negative Genetic
TFB5 YDR079C-A Component of RNA polymerase II general transcription factor TFIIH physical 2 2 1 Affinity Capture-Western, Co-crystal Structure
SSA1 YAL005C ATPase involved in protein folding and NLS-directed nuclear transport physical 2 1 1 Affinity Capture-MS, Affinity Capture-MS
SSB1 YDL229W Cytoplasmic ATPase that is a ribosome-associated molecular chaperone physical 2 1 1 Affinity Capture-MS, Affinity Capture-MS
IXR1 YKL032C Transcriptional repressor that regulates hypoxic genes during normoxia regulation 1 1 1 DNA to cDNA expression microarray evidence
MSN2 YMR037C Stress-responsive transcriptional activator regulation 1 1 1 chromatin immunoprecipitation-chip evidence
RAP1 YNL216W Essential DNA-binding transcription regulator that binds many loci regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CDC42 YLR229C Small rho-like GTPase genetic 1 1 1 Positive Genetic
CCR4 YAL021C Component of the CCR4-NOT transcriptional complex physical 1 1 1 Affinity Capture-RNA
CCL1 YPR025C Cyclin partner of the cyclin-dependent kinase (CDK) Kin28p genetic 1 1 1 Synthetic Lethality
DHH1 YDL160C Cytoplasmic DEAD-box helicase and mRNA decapping activator physical 1 1 1 Affinity Capture-RNA
HRT1 YOL133W RING-H2 domain core subunit of multiple ubiquitin ligase complexes physical 1 1 1 Reconstituted Complex
ADA2 YDR448W Transcription coactivator physical 1 1 1 Affinity Capture-MS
GLE2 YER107C RNA export factor associated with the nuclear pore complex (NPC) genetic 1 1 1 Synthetic Growth Defect
TAF1 YGR274C TFIID subunit, involved in RNA pol II transcription initiation physical 1 1 1 Co-localization
TFA1 YKL028W TFIIE large subunit physical 1 1 1 Co-purification
HEK2 YBL032W RNA binding protein involved in asymmetric localization of ASH1 mRNA physical 1 1 1 Affinity Capture-RNA
KIN28 YDL108W Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly genetic 1 1 1 Synthetic Lethality
DEF1 YKL054C RNAPII degradation factor physical 1 1 1 Affinity Capture-MS
FUS3 YBL016W Mitogen-activated serine/threonine protein kinase involved in mating genetic 1 1 1 Negative Genetic
RUB1 YDR139C Ubiquitin-like protein with similarity to mammalian NEDD8 genetic 1 1 1 Synthetic Growth Defect
SNF6 YHL025W Subunit of the SWI/SNF chromatin remodeling complex genetic 1 1 1 Negative Genetic
HNT1 YDL125C Adenosine 5'-monophosphoramidase genetic 1 1 1 Synthetic Lethality
MPT5 YGL178W mRNA-binding protein of the PUF family physical 1 1 1 Affinity Capture-RNA
UBC12 YLR306W Enzyme that mediates the conjugation of Rub1p physical 1 1 1 Reconstituted Complex
UBC4 YBR082C Ubiquitin-conjugating enzyme (E2) physical 1 1 1 Reconstituted Complex
TFB6 YOR352W Subunit of TFIIH complex physical 1 1 1 Co-purification
TYE7 YOR344C Serine-rich protein that contains a bHLH DNA binding motif physical 1 1 1 Two-hybrid
UBC6 YER100W Ubiquitin-conjugating enzyme involved in ERAD physical 1 1 1 PCA
URA7 YBL039C Major CTP synthase isozyme (see also URA8) genetic 1 1 1 Negative Genetic
XRN1 YGL173C Evolutionarily-conserved 5'-3' exonuclease genetic 1 1 1 Negative Genetic
TFA2 YKR062W TFIIE small subunit physical 1 1 1 Co-purification
HRQ1 YDR291W 3'-5' DNA helicase of the conserved RecQ family genetic 1 1 1 Positive Genetic
KIN4 YOR233W Serine/threonine protein kinase genetic 1 1 1 Dosage Growth Defect