GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
SIR3	YLR442C	Silencing protein	physical	12	4	8	Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Reconstituted Complex, Two-hybrid, Reconstituted Complex, Co-crystal Structure
RIF1	YBR275C	Protein involved in control of DNA replication	physical	10	4	7	Two-hybrid, Two-hybrid, Two-hybrid, Co-crystal Structure, Two-hybrid, Reconstituted Complex, Affinity Capture-Western, Two-hybrid, Reconstituted Complex, Two-hybrid
RIF2	YLR453C	Protein that binds to the Rap1p C-terminus	physical	10	5	6	Two-hybrid, Two-hybrid, Co-crystal Structure, Reconstituted Complex, Affinity Capture-Western, Two-hybrid, Reconstituted Complex, Reconstituted Complex, Affinity Capture-Western, Co-localization
SIR4	YDR227W	SIR protein involved in assembly of silent chromatin domains	physical	8	3	7	Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Affinity Capture-Western
MRE11	YMR224C	Nuclease subunit of the MRX complex with Rad50p and Xrs2p	genetic	5	4	4	Phenotypic Suppression, Synthetic Growth Defect, Synthetic Lethality, Negative Genetic, Synthetic Growth Defect
TAF4	YMR005W	TFIID subunit (48 kDa)	physical	5	3	3	Far Western, Reconstituted Complex, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western
GCR1	YPL075W	Transcriptional activator of genes involved in glycolysis	physical	4	3	4	Affinity Capture-Western, Reconstituted Complex, Reconstituted Complex, Two-hybrid
SIR3	YLR442C	Silencing protein	genetic	4	3	4	Dosage Rescue, Phenotypic Suppression, Synthetic Rescue, Phenotypic Suppression
RIF1	YBR275C	Protein involved in control of DNA replication	genetic	4	2	4	Negative Genetic, Negative Genetic, Negative Genetic, Phenotypic Suppression
ULS1	YOR191W	Swi2/Snf2-related translocase, SUMO-Targeted Ubiquitin Ligase (STUbL)	genetic	4	3	3	Negative Genetic, Negative Genetic, Synthetic Growth Defect, Phenotypic Suppression
ERG5	YMR015C	C-22 sterol desaturase	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PDC1	YLR044C	Major of three pyruvate decarboxylase isozymes	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS26A	YGL189C	Protein component of the small (40S) ribosomal subunit	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS4B	YHR203C	Protein component of the small (40S) ribosomal subunit	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS9B	YBR189W	Protein component of the small (40S) ribosomal subunit	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS7B	YNL096C	Protein component of the small (40S) ribosomal subunit	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL12A	YEL054C	Ribosomal 60S subunit protein L12A	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL16B	YNL069C	Ribosomal 60S subunit protein L16B	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL20A	YMR242C	Ribosomal 60S subunit protein L20A	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL20B	YOR312C	Ribosomal 60S subunit protein L20B	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL23A	YBL087C	Ribosomal 60S subunit protein L23A	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL24B	YGR148C	Ribosomal 60S subunit protein L24B	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL2A	YFR031C-A	Ribosomal 60S subunit protein L2A	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL36B	YPL249C-A	Ribosomal 60S subunit protein L36B	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
KES1	YPL145C	Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
HSL1	YKL101W	Nim1p-related protein kinase	genetic	3	2	3	Positive Genetic, Positive Genetic, Negative Genetic
RIF2	YLR453C	Protein that binds to the Rap1p C-terminus	genetic	3	2	3	Negative Genetic, Negative Genetic, Phenotypic Suppression
MED1	YPR070W	Subunit of the RNA polymerase II mediator complex	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
ARP6	YLR085C	Actin-related protein that binds nucleosomes	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
VPS71	YML041C	Nucleosome-binding component of the SWR1 complex	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
VPS72	YDR485C	Htz1p-binding component of the SWR1 complex	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
SWC3	YAL011W	Protein of unknown function	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
SWR1	YDR334W	Swi2/Snf2-related ATPase	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
SET2	YJL168C	Histone methyltransferase with a role in transcriptional elongation	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
RIC1	YLR039C	Protein involved in retrograde transport to the cis-Golgi network	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	regulation	3	3	2	DNAse footprinting evidence, DNA to cDNA expression microarray evidence, electrophoretic mobility shift assay evidence
SPT15	YER148W	TATA-binding protein (TBP)	physical	3	2	2	Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western
TAF5	YBR198C	Subunit (90 kDa) of TFIID and SAGA complexes	physical	3	2	2	Far Western, Reconstituted Complex, Reconstituted Complex
ESA1	YOR244W	Catalytic subunit of the histone acetyltransferase complex (NuA4)	physical	3	2	1	Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex
GCN4	YEL009C	bZIP transcriptional activator of amino acid biosynthetic genes	physical	3	2	1	Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western
FKH1	YIL131C	Forkhead family transcription factor	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
PGK1	YCR012W	3-phosphoglycerate kinase	regulation	2	2	2	DNA to cDNA expression microarray evidence, nucleic acid binding evidence
ADH1	YOL086C	Alcohol dehydrogenase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
FRS2	YFL022C	Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
FAS2	YPL231W	Alpha subunit of fatty acid synthetase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PFK2	YMR205C	Beta subunit of heterooctameric phosphofructokinase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
HMS1	YOR032C	bHLH protein with similarity to myc-family transcription factors	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CPR1	YDR155C	Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin)	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
YAL004W	YAL004W	Dubious open reading frame	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
YLL044W	YLL044W	Dubious open reading frame	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CTS1	YLR286C	Endochitinase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
ENO2	YHR174W	Enolase II, a phosphopyruvate hydratase	regulation	2	2	2	DNA to cDNA expression microarray evidence, electrophoretic mobility shift assay evidence
FBA1	YKL060C	Fructose 1,6-bisphosphate aldolase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PRO1	YDR300C	Gamma-glutamyl kinase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
VID24	YBR105C	GID Complex regulatory subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PGI1	YBR196C	Glycolytic enzyme phosphoglucose isomerase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PRY3	YJL078C	GPI-anchored cell wall protein involved in export of sterols	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
SST2	YLR452C	GTPase-activating protein for Gpa1p	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
HOM6	YJR139C	Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
LCB3	YJL134W	Long-chain base-1-phosphate phosphatase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CIS3	YJL158C	Mannose-containing glycoprotein constituent of the cell wall	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
ALD5	YER073W	Mitochondrial aldehyde dehydrogenase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
MAE1	YKL029C	Mitochondrial malic enzyme	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
DDR2	YOL052C-A	Multi-stress response protein	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
GPD2	YOL059W	NAD-dependent glycerol 3-phosphate dehydrogenase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
GPD1	YDL022W	NAD-dependent glycerol-3-phosphate dehydrogenase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PHO89	YBR296C	Plasma membrane Na+/Pi cotransporter	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS10B	YMR230W	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS22A	YJL190C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS21B	YJL136C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS24B	YIL069C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS25A	YGR027C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS25B	YLR333C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS28B	YLR264W	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS29B	YDL061C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS30A	YLR287C-A	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS6A	YPL090C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS8A	YBL072C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS7A	YOR096W	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS4A	YJR145C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS19A	YOL121C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS19B	YNL302C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS14A	YCR031C	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS0B	YLR048W	Protein component of the small (40S) ribosomal subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS2	YGL123W	Protein component of the small (40S) subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
NCA3	YJL116C	Protein involved in mitochondrion organization	regulation	2	2	2	DNA to cDNA expression microarray evidence, quantitative reverse transcription polymerase chain reaction evidence
YPL199C	YPL199C	Protein involved in nonstop mRNA decay	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PAU8	YAL068C	Protein of unknown function	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
YOR292C	YOR292C	Putative protein of unknown function	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CMS1	YLR003C	Putative subunit of the 90S preribosome processome complex	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CDC19	YAL038W	Pyruvate kinase	regulation	2	2	2	DNAse footprinting evidence, DNA to cDNA expression microarray evidence
GAC1	YOR178C	Regulatory subunit for Glc7p type-1 protein phosphatase (PP1)	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, quantitative reverse transcription polymerase chain reaction evidence
RPL11B	YGR085C	Ribosomal 60S subunit protein L11B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL12B	YDR418W	Ribosomal 60S subunit protein L12B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL13B	YMR142C	Ribosomal 60S subunit protein L13B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL15A	YLR029C	Ribosomal 60S subunit protein L15A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL16A	YIL133C	Ribosomal 60S subunit protein L16A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL17A	YKL180W	Ribosomal 60S subunit protein L17A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL17B	YJL177W	Ribosomal 60S subunit protein L17B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL18A	YOL120C	Ribosomal 60S subunit protein L18A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL18B	YNL301C	Ribosomal 60S subunit protein L18B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL19A	YBR084C-A	Ribosomal 60S subunit protein L19A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL22B	YFL034C-A	Ribosomal 60S subunit protein L22A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL23B	YER117W	Ribosomal 60S subunit protein L23B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL24A	YGL031C	Ribosomal 60S subunit protein L24A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL25	YOL127W	Ribosomal 60S subunit protein L25	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL29	YFR032C-A	Ribosomal 60S subunit protein L29	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL2B	YIL018W	Ribosomal 60S subunit protein L2B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL33B	YOR234C	Ribosomal 60S subunit protein L33B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL34A	YER056C-A	Ribosomal 60S subunit protein L34A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL34B	YIL052C	Ribosomal 60S subunit protein L34B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL37B	YDR500C	Ribosomal 60S subunit protein L37B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL38	YLR325C	Ribosomal 60S subunit protein L38	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL41B	YDL133C-A	Ribosomal 60S subunit protein L41B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL42B	YHR141C	Ribosomal 60S subunit protein L42B	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL5	YPL131W	Ribosomal 60S subunit protein L5	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL6A	YML073C	Ribosomal 60S subunit protein L6A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL7A	YGL076C	Ribosomal 60S subunit protein L7A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL8A	YHL033C	Ribosomal 60S subunit protein L8A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL9A	YGL147C	Ribosomal 60S subunit protein L9A	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS17A	YML024W	Ribosomal protein 51 (rp51) of the small (40s) subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS17B	YDR447C	Ribosomal protein 51 (rp51) of the small (40s) subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPS1B	YML063W	Ribosomal protein of the small (40S) subunit	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPP2A	YOL039W	Ribosomal protein P2 alpha	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PMP3	YDR276C	Small plasma membrane protein	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
LTV1	YKL143W	Subunit of the EGO/GSE complex	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
GPM1	YKL152C	Tetrameric phosphoglycerate mutase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
TPI1	YDR050C	Triose phosphate isomerase, abundant glycolytic enzyme	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RPL40B	YKR094C	Ubiquitin-ribosomal 60S subunit protein L40B fusion protein	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
ZRC1	YMR243C	Vacuolar membrane zinc transporter	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	2	2	2	Reconstituted Complex, Affinity Capture-RNA
BRE2	YLR015W	Subunit of COMPASS (Set1C) complex	genetic	2	2	2	Positive Genetic, Negative Genetic
HIR3	YJR140C	Subunit of the HIR complex	genetic	2	2	2	Positive Genetic, Negative Genetic
ERG6	YML008C	Delta(24)-sterol C-methyltransferase	genetic	2	2	2	Positive Genetic, Negative Genetic
CLN3	YAL040C	G1 cyclin involved in cell cycle progression	genetic	2	2	2	Synthetic Rescue, Negative Genetic
GTR1	YML121W	Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex	genetic	2	2	2	Positive Genetic, Negative Genetic
MMR1	YLR190W	Phosphorylated protein of the mitochondrial outer membrane	genetic	2	2	2	Negative Genetic, Positive Genetic
CLB5	YPR120C	B-type cyclin involved in DNA replication during S phase	genetic	2	2	2	Synthetic Rescue, Positive Genetic
EXO1	YOR033C	5'-3' exonuclease and flap-endonuclease	genetic	2	2	2	Synthetic Growth Defect, Phenotypic Suppression
SIR4	YDR227W	SIR protein involved in assembly of silent chromatin domains	genetic	2	2	2	Dosage Rescue, Phenotypic Suppression
SIR1	YKR101W	Protein involved in silencing at mating-type loci HML and HMR	genetic	2	2	2	Synthetic Rescue, Dosage Rescue
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	genetic	2	2	2	Synthetic Rescue, Negative Genetic
SUM1	YDR310C	Transcriptional repressor that regulates middle-sporulation genes	genetic	2	2	2	Synthetic Growth Defect, Positive Genetic
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	genetic	2	2	2	Synthetic Rescue, Negative Genetic
SWI6	YLR182W	Transcription cofactor	genetic	2	2	2	Synthetic Rescue, Positive Genetic
SWI4	YER111C	DNA binding component of the SBF complex (Swi4p-Swi6p)	genetic	2	2	2	Synthetic Rescue, Negative Genetic
VPS8	YAL002W	Membrane-binding component of the CORVET complex	genetic	2	2	2	Positive Genetic, Negative Genetic
UBP6	YFR010W	Ubiquitin-specific protease	genetic	2	2	2	Positive Genetic, Negative Genetic
SSO2	YMR183C	Plasma membrane t-SNARE	genetic	2	2	2	Negative Genetic, Positive Genetic
HFA1	YMR207C	Mitochondrial acetyl-coenzyme A carboxylase	genetic	2	2	2	Negative Genetic, Positive Genetic
BST1	YFL025C	GPI inositol deacylase of the endoplasmic reticulum (ER)	genetic	2	2	2	Negative Genetic, Positive Genetic
MDM35	YKL053C-A	Mitochondrial intermembrane space protein	genetic	2	2	2	Positive Genetic, Negative Genetic
PFK27	YOL136C	6-phosphofructo-2-kinase	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
PIM1	YBL022C	ATP-dependent Lon protease	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
POC4	YPL144W	Component of a heterodimeric Poc4p-Irc25p chaperone	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
DPB11	YJL090C	DNA replication initiation protein	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
APL4	YPR029C	Gamma-adaptin	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
TEM1	YML064C	GTPase involved in initiation of Mitotic Exit Network (MEN)	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
HXT5	YHR096C	Hexose transporter with moderate affinity for glucose	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
NTC20	YBR188C	Member of the NineTeen Complex (NTC)	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
IRC15	YPL017C	Microtubule associated protein	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YML6	YML025C	Mitochondrial ribosomal protein of the large subunit	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
FUN19	YAL034C	Non-essential protein of unknown function	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
UTP6	YDR449C	Nucleolar protein	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
RPS18B	YML026C	Protein component of the small (40S) ribosomal subunit	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
RPS6B	YBR181C	Protein component of the small (40S) ribosomal subunit	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
MAM3	YOL060C	Protein involved in magnesium homeostasis	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
SND1	YDR186C	Protein involved in SRP-independent targeting of substrates to the ER	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YGK3	YOL128C	Protein kinase related to mammalian GSK-3 glycogen synthase kinases	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
FRE8	YLR047C	Protein with sequence similarity to iron/copper reductases	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YEL023C	YEL023C	Putative protein of unknown function	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YPT31	YER031C	Rab family GTPase	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
RKI1	YOR095C	Ribose-5-phosphate ketol-isomerase	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
RPL11A	YPR102C	Ribosomal 60S subunit protein L11A	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
APS2	YJR058C	Small subunit of the clathrin-associated adaptor complex AP-2	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
MON1	YGL124C	Subunit of a heterodimeric guanine nucleotide exchange factor (GEF)	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
SLX8	YER116C	Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
ATG27	YJL178C	Type I membrane protein involved in autophagy and the Cvt pathway	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	genetic	2	1	2	Negative Genetic, Negative Genetic
LSM6	YDR378C	Lsm (Like Sm) protein	genetic	2	1	2	Positive Genetic, Positive Genetic
DST1	YGL043W	General transcription elongation factor TFIIS	genetic	2	1	2	Negative Genetic, Negative Genetic
CPR1	YDR155C	Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin)	genetic	2	1	2	Negative Genetic, Negative Genetic
EAF3	YPR023C	Component of the Rpd3S histone deacetylase complex	genetic	2	1	2	Negative Genetic, Negative Genetic
COG8	YML071C	Component of the conserved oligomeric Golgi complex	genetic	2	1	2	Negative Genetic, Negative Genetic
PAC10	YGR078C	Part of the heteromeric co-chaperone GimC/prefoldin complex	genetic	2	1	2	Negative Genetic, Negative Genetic
MNN10	YDR245W	Subunit of a Golgi mannosyltransferase complex	genetic	2	1	2	Negative Genetic, Negative Genetic
RAD1	YPL022W	Single-stranded DNA endonuclease (with Rad10p)	genetic	2	1	2	Negative Genetic, Negative Genetic
BUD13	YGL174W	Subunit of the RES complex	genetic	2	1	2	Positive Genetic, Positive Genetic
EST1	YLR233C	TLC1 RNA-associated factor involved in telomere length regulation	genetic	2	1	2	Negative Genetic, Negative Genetic
HAL5	YJL165C	Snf1p-related nutrient-responsive protein kinase	genetic	2	1	2	Negative Genetic, Negative Genetic
PPZ1	YML016C	Serine/threonine protein phosphatase Z, isoform of Ppz2p	genetic	2	1	2	Positive Genetic, Positive Genetic
RCO1	YMR075W	Essential component of the Rpd3S histone deacetylase complex	genetic	2	1	2	Negative Genetic, Negative Genetic
SET3	YKR029C	Defining member of the SET3 histone deacetylase complex	genetic	2	1	2	Negative Genetic, Negative Genetic
YPT6	YLR262C	Rab family GTPase	genetic	2	1	2	Negative Genetic, Negative Genetic
SGF73	YGL066W	Subunit of DUBm module of SAGA and SLIK	genetic	2	1	2	Positive Genetic, Positive Genetic
RPA14	YDR156W	RNA polymerase I subunit A14	genetic	2	1	2	Positive Genetic, Positive Genetic
SAC3	YDR159W	mRNA export factor	genetic	2	1	2	Positive Genetic, Positive Genetic
SNF5	YBR289W	Subunit of the SWI/SNF chromatin remodeling complex	genetic	2	1	2	Positive Genetic, Positive Genetic
THR4	YCR053W	Threonine synthase	genetic	2	1	2	Negative Genetic, Negative Genetic
TGL2	YDR058C	Triacylglycerol lipase that is localized to the mitochondria	genetic	2	1	2	Negative Genetic, Negative Genetic
RIM15	YFL033C	Protein kinase involved in cell proliferation in response to nutrients	genetic	2	1	2	Negative Genetic, Negative Genetic
XRN1	YGL173C	Evolutionarily-conserved 5'-3' exonuclease	genetic	2	1	2	Positive Genetic, Positive Genetic
YTA7	YGR270W	Chromatin-binding ATPase that regulates histone gene expression	genetic	2	1	2	Negative Genetic, Negative Genetic
RTT109	YLL002W	Histone acetyltransferase	genetic	2	1	2	Negative Genetic, Negative Genetic
SKY1	YMR216C	SR protein kinase (SRPK)	genetic	2	1	2	Negative Genetic, Negative Genetic
VPS27	YNR006W	Endosomal protein that forms a complex with Hse1p	genetic	2	1	2	Negative Genetic, Negative Genetic
HCM1	YCR065W	Forkhead transcription factor	genetic	2	1	2	Negative Genetic, Negative Genetic
BNA1	YJR025C	3-hydroxyanthranilic acid dioxygenase	genetic	2	1	2	Negative Genetic, Negative Genetic
RAD27	YKL113C	5' to 3' exonuclease, 5' flap endonuclease	genetic	2	1	2	Negative Genetic, Negative Genetic
MGR1	YCL044C	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	genetic	2	1	2	Negative Genetic, Negative Genetic
GVP36	YIL041W	BAR domain protein that localizes to early and late Golgi vesicles	genetic	2	1	2	Negative Genetic, Negative Genetic
ENT4	YLL038C	Protein of unknown function	genetic	2	1	2	Negative Genetic, Negative Genetic
ECM7	YLR443W	Putative integral membrane protein with a role in calcium uptake	genetic	2	1	2	Negative Genetic, Negative Genetic
MSC1	YML128C	Protein of unknown function	genetic	2	1	2	Negative Genetic, Negative Genetic
LAS21	YJL062W	Mannose-ethanolamine phosphotransferase	genetic	2	1	2	Positive Genetic, Positive Genetic
PTH1	YHR189W	One of two mitochondrially-localized peptidyl-tRNA hydrolases	genetic	2	1	2	Negative Genetic, Negative Genetic
MOB2	YFL034C-B	Activator of Cbk1p kinase	genetic	2	2	1	Positive Genetic, Negative Genetic
SWI3	YJL176C	Subunit of the SWI/SNF chromatin remodeling complex	physical	2	2	1	Reconstituted Complex, Affinity Capture-Western
SUA7	YPR086W	Transcription factor TFIIB	genetic	2	2	1	Positive Genetic, Negative Genetic
CDC1	YDR182W	Putative mannose-ethanolamine phosphate phosphodiesterase	genetic	2	2	1	Positive Genetic, Negative Genetic
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FKH2	YNL068C	Forkhead family transcription factor	regulation	1	1	1	ChEC-Seq experiments
BMH2	YDR099W	14-3-3 protein, minor isoform	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SLC1	YDL052C	1-acyl-sn-glycerol-3-phosphate acyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ARO4	YBR249C	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ERG13	YML126C	3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SRY1	YKL218C	3-hydroxyaspartate dehydratase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
EHD3	YDR036C	3-hydroxyisobutyryl-CoA hydrolase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TSC10	YBR265W	3-ketosphinganine reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
GRE2	YOL151W	3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SER33	YIL074C	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
MDE1	YJR024C	5'-methylthioribulose-1-phosphate dehydratase	regulation	1	1	1	DNA to cDNA expression microarray evidence
PRS1	YKL181W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GND1	YHR183W	6-phosphogluconate dehydrogenase (decarboxylating)	regulation	1	1	1	DNA to cDNA expression microarray evidence
SOL3	YHR163W	6-phosphogluconolactonase	regulation	1	1	1	DNA to cDNA expression microarray evidence
PEX6	YNL329C	AAA-peroxin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ILV5	YLR355C	Acetohydroxyacid reductoisomerase and mtDNA binding protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
ERG10	YPL028W	Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase)	regulation	1	1	1	DNA to cDNA expression microarray evidence
ACS2	YLR153C	Acetyl-coA synthetase isoform	regulation	1	1	1	DNA to cDNA expression microarray evidence
ACS1	YAL054C	Acetyl-coA synthetase isoform	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AIP1	YMR092C	Actin cortical patch component	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC20	YGL116W	Activator of anaphase-promoting complex/cyclosome (APC/C)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SKT5	YBL061C	Activator of Chs3p (chitin synthase III) during vegetative growth	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ACB1	YGR037C	Acyl-CoA-binding protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
EEB1	YPL095C	Acyl-coenzymeA:ethanol O-acyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADO1	YJR105W	Adenosine kinase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ADK1	YDR226W	Adenylate kinase, required for purine metabolism	regulation	1	1	1	DNA to cDNA expression microarray evidence
ADE13	YLR359W	Adenylosuccinate lyase	regulation	1	1	1	DNA to cDNA expression microarray evidence
MET14	YKL001C	Adenylylsulfate kinase	regulation	1	1	1	DNA to cDNA expression microarray evidence
AGA2	YGL032C	Adhesion subunit of a-agglutinin of a-cells	regulation	1	1	1	DNA to cDNA expression microarray evidence
SPB1	YCL054W	AdoMet-dependent methyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ARF2	YDL137W	ADP-ribosylation factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARF1	YDL192W	ADP-ribosylation factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AGE1	YDR524C	ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector	regulation	1	1	1	DNA to cDNA expression microarray evidence
ATF2	YGR177C	Alcohol acetyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADH5	YBR145W	Alcohol dehydrogenase isoenzyme V	regulation	1	1	1	DNA to cDNA expression microarray evidence
MNS1	YJR131W	Alpha-1,2-mannosidase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MNL1	YHR204W	Alpha-1,2-specific exomannosidase of the endoplasmic reticulum	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PUP2	YGR253C	Alpha 5 subunit of the 20S proteasome	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SEC17	YBL050W	Alpha-SNAP cochaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TCP1	YDR212W	Alpha subunit of chaperonin-containing T-complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
PFK1	YGR240C	Alpha subunit of heterooctameric phosphofructokinase	regulation	1	1	1	DNA to cDNA expression microarray evidence
OST1	YJL002C	Alpha subunit of the oligosaccharyltransferase complex of the ER lumen	regulation	1	1	1	DNA to cDNA expression microarray evidence
ALF1	YNL148C	Alpha-tubulin folding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR027W	YMR027W	A metal-dependent phosphatase, part of the DUF89 protein family	regulation	1	1	1	DNA to cDNA expression microarray evidence
APE2	YKL157W	Aminopeptidase yscII	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RVS161	YCR009C	Amphiphysin-like lipid raft protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TRP4	YDR354W	Anthranilate phosphoribosyl transferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
LAA1	YJL207C	AP-1 accessory protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SAR1	YPL218W	ARF family GTPase	regulation	1	1	1	DNA to cDNA expression microarray evidence
CAR1	YPL111W	Arginase, catabolizes arginine to ornithine and urea	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARO9	YHR137W	Aromatic aminotransferase II	regulation	1	1	1	DNA to cDNA expression microarray evidence
ASN2	YGR124W	Asparagine synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
HOM2	YDR158W	Aspartic beta semi-aldehyde dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPS1	YLR120C	Aspartic protease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ACA1	YER045C	ATF/CREB family basic leucine zipper (bZIP) transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARB1	YER036C	ATPase of the ATP-binding cassette (ABC) family	regulation	1	1	1	DNA to cDNA expression microarray evidence
PDR11	YIL013C	ATP-binding cassette (ABC) transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CCA1	YER168C	ATP (CTP):tRNA-specific tRNA nucleotidyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HIS1	YER055C	ATP phosphoribosyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ATG40	YOR152C	Autophagy receptor with a role in endoplasmic reticulum degradation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PHO4	YFR034C	Basic helix-loop-helix (bHLH) transcription factor of the myc-family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YAP6	YDR259C	Basic leucine zipper (bZIP) transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HAC1	YFL031W	Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog)	regulation	1	1	1	DNA to cDNA expression microarray evidence
GAS1	YMR307W	Beta-1,3-glucanosyltransferase required for cell wall assembly	regulation	1	1	1	DNA to cDNA expression microarray evidence
PRE2	YPR103W	Beta 5 subunit of the 20S proteasome	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FRS1	YLR060W	Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FAS1	YKL182W	Beta subunit of fatty acid synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
TUB2	YFL037W	Beta-tubulin	regulation	1	1	1	DNA to cDNA expression microarray evidence
BDF1	YLR399C	BET family transcriptional regulator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AYR1	YIL124W	Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
MET22	YOL064C	Bisphosphate-3'-nucleotidase	regulation	1	1	1	DNA to cDNA expression microarray evidence
AGP1	YCL025C	Broad-specificity, low-affinity amino acid permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MET28	YIR017C	bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BUD20	YLR074C	C2H2-type zinc finger protein required for ribosome assembly	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ERG26	YGL001C	C-3 sterol dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SIP4	YJL089W	C6 zinc cluster transcriptional activator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ERG2	YMR202W	C-8 sterol isomerase	regulation	1	1	1	DNA to cDNA expression microarray evidence
GDT1	YBR187W	Calcium and manganese transporter with higher affinity for Ca2+	regulation	1	1	1	DNA to cDNA expression microarray evidence
RVS167	YDR388W	Calmodulin-binding actin-associated protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
NCE103	YNL036W	Carbonic anhydrase	regulation	1	1	1	DNA to cDNA expression microarray evidence
FKS1	YLR342W	Catalytic subunit of 1,3-beta-D-glucan synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
PPH22	YDL188C	Catalytic subunit of protein phosphatase 2A, PP2A	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
POL1	YNL102W	Catalytic subunit of the DNA polymerase I alpha-primase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIR4	YOR009W	Cell wall mannoprotein	regulation	1	1	1	DNA to cDNA expression microarray evidence
DAN4	YJR151C	Cell wall mannoprotein	regulation	1	1	1	DNA to cDNA expression microarray evidence
DAN1	YJR150C	Cell wall mannoprotein	regulation	1	1	1	DNA to cDNA expression microarray evidence
CCW12	YLR110C	Cell wall mannoprotein	regulation	1	1	1	DNA to cDNA expression microarray evidence
CWP1	YKL096W	Cell wall mannoprotein that localizes to birth scars of daughter cells	regulation	1	1	1	DNA to cDNA expression microarray evidence
CCW22	YDR134C	Cell wall protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SUN4	YNL066W	Cell wall protein related to glucanases localized in birth scars	regulation	1	1	1	DNA to cDNA expression microarray evidence
SCW11	YGL028C	Cell wall protein with similarity to glucanases	regulation	1	1	1	DNA to cDNA expression microarray evidence
LAG1	YHL003C	Ceramide synthase component	regulation	1	1	1	DNA to cDNA expression microarray evidence
LAC1	YKL008C	Ceramide synthase component	regulation	1	1	1	DNA to cDNA expression microarray evidence
CIT2	YCR005C	Citrate synthase, peroxisomal isozyme involved in glyoxylate cycle	regulation	1	1	1	DNA to cDNA expression microarray evidence
MET6	YER091C	Cobalamin-independent methionine synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
RRP36	YOR287C	Component of 90S preribosomes	regulation	1	1	1	DNA to cDNA expression microarray evidence
ARP7	YPR034W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DUG3	YNL191W	Component of glutamine amidotransferase (GATase II)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CEX1	YOR112W	Component of nuclear aminoacylation-dependent tRNA export pathway	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CAF40	YNL288W	Component of the CCR4-NOT transcriptional complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
SGF29	YCL010C	Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes	regulation	1	1	1	DNA to cDNA expression microarray evidence
MCM7	YBR202W	Component of the Mcm2-7 hexameric helicase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RXT3	YDL076C	Component of the Rpd3L histone deacetylase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UTP22	YGR090W	Component of the small-subunit processome	regulation	1	1	1	DNA to cDNA expression microarray evidence
NSE4	YDL105W	Component of the SMC5-SMC6 complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
BFR2	YDR299W	Component of the SSU and 90S preribosomes	regulation	1	1	1	DNA to cDNA expression microarray evidence
TOM40	YMR203W	Component of the TOM (translocase of outer membrane) complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
SUB2	YDL084W	Component of the TREX complex required for nuclear mRNA export	regulation	1	1	1	DNA to cDNA expression microarray evidence
SCP1	YOR367W	Component of yeast cortical actin cytoskeleton	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SEC61	YLR378C	Conserved ER protein translocation channel	regulation	1	1	1	DNA to cDNA expression microarray evidence
IMO32	YGR031W	Conserved mitochondrial protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OYE3	YPL171C	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	regulation	1	1	1	DNA to cDNA expression microarray evidence
THO1	YER063W	Conserved nuclear RNA-binding protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPP0	YLR340W	Conserved ribosomal protein P0 of the ribosomal stalk	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAM17	YKR065C	Constituent of the TIM23 complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
PHO3	YBR092C	Constitutively expressed acid phosphatase similar to Pho5p	regulation	1	1	1	DNA to cDNA expression microarray evidence
TRS23	YDR246W	Core component of transport protein particle (TRAPP) complexes I-III	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TOS1	YBR162C	Covalently-bound cell wall protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
CWP2	YKL096W-A	Covalently linked cell wall mannoprotein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR302W	YOR302W	CPA1 uORF	regulation	1	1	1	DNA to cDNA expression microarray evidence
SGV1	YPR161C	Cyclin (Bur2p)-dependent protein kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PHO81	YGR233C	Cyclin-dependent kinase (CDK) inhibitor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CIP1	YPL014W	Cyclin-dependent kinase inhibitor	regulation	1	1	1	DNA to cDNA expression microarray evidence
PCL1	YNL289W	Cyclin, interacts with cyclin-dependent kinase Pho85p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DUG1	YFR044C	Cys-Gly metallo-di-peptidase	regulation	1	1	1	DNA to cDNA expression microarray evidence
CYS3	YAL012W	Cystathionine gamma-lyase	regulation	1	1	1	DNA to cDNA expression microarray evidence
CYC3	YAL039C	Cytochrome c heme lyase (holocytochrome c synthase)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CYC1	YJR048W	Cytochrome c, isoform 1	regulation	1	1	1	DNA to cDNA expression microarray evidence
REH1	YLR387C	Cytoplasmic 60S subunit biogenesis factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ALA1	YOR335C	Cytoplasmic and mitochondrial alanyl-tRNA synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
GRS1	YBR121C	Cytoplasmic and mitochondrial glycyl-tRNA synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	regulation	1	1	1	DNA to cDNA expression microarray evidence
RIA1	YNL163C	Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OCA5	YHL029C	Cytoplasmic protein required for replication of Brome mosaic virus	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SRO9	YCL037C	Cytoplasmic RNA-binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	regulation	1	1	1	DNA to cDNA expression microarray evidence
TRR1	YDR353W	Cytoplasmic thioredoxin reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ALD6	YPL061W	Cytosolic aldehyde dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
DED81	YHR019C	Cytosolic asparaginyl-tRNA synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
AAT2	YLR027C	Cytosolic aspartate aminotransferase involved in nitrogen metabolism	regulation	1	1	1	DNA to cDNA expression microarray evidence
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ASP1	YDR321W	Cytosolic L-asparaginase, involved in asparagine catabolism	regulation	1	1	1	DNA to cDNA expression microarray evidence
SHM2	YLR058C	Cytosolic serine hydroxymethyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YCR103C	YCR103C	Deleted ORF	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PUT2	YHR037W	Delta-1-pyrroline-5-carboxylate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
LIA1	YJR070C	Deoxyhypusine hydroxylase	regulation	1	1	1	DNA to cDNA expression microarray evidence
DIP5	YPL265W	Dicarboxylic amino acid permease	regulation	1	1	1	DNA to cDNA expression microarray evidence
LPD1	YFL018C	Dihydrolipoamide dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ILV3	YJR016C	Dihydroxyacid dehydratase	regulation	1	1	1	DNA to cDNA expression microarray evidence
HPT1	YDR399W	Dimeric hypoxanthine-guanine phosphoribosyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
POG1	YIL122W	DNA-binding transcriptional activator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NTG2	YOL043C	DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase	regulation	1	1	1	DNA to cDNA expression microarray evidence
CDC45	YLR103C	DNA replication initiation factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SEC59	YMR013C	Dolichol kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ALG3	YBL082C	Dolichol-P-Man dependent alpha(1-3) mannosyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR400W	YLR400W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR402W	YLR402W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR184W	YLR184W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPL025C	YPL025C	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPR076W	YPR076W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YAL069W	YAL069W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR193W	YDR193W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR095C	YDR095C	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR160W	YGR160W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR176W	YGR176W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR139W	YGR139W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHR095W	YHR095W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR277C	YOR277C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YIL100W	YIL100W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPL136W	YPL136W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPL142C	YPL142C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YEL045C	YEL045C	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YML089C	YML089C	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OPI11	YPR044C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YKL031W	YKL031W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BUD28	YLR062C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YNL179C	YNL179C	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FYV1	YDR024W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YKL030W	YKL030W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDL023C	YDL023C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR154C	YDR154C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR151C	YGR151C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR259C	YGR259C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YCL065W	YCL065W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR173W-A	YMR173W-A	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR349W	YLR349W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YBL083C	YBL083C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR076C	YLR076C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR339C	YLR339C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR379W	YLR379W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPL197C	YPL197C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YOR366W	YOR366W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR113W	YBR113W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGL072C	YGL072C	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBL077W	YBL077W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YKL177W	YKL177W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR417C	YDR417C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJR114W	YJR114W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OPI9	YLR338W	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YCR087W	YCR087W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YCR013C	YCR013C	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YKL153W	YKL153W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR396W	YDR396W	Dubious open reading frame unlikely to encode a functional protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAC11	YDR488C	Dynein intermediate chain, microtubule motor protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PIL1	YGR086C	Eisosome core component	regulation	1	1	1	DNA to cDNA expression microarray evidence
ELO3	YLR372W	Elongase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ELO1	YJL196C	Elongase I, medium-chain acyl elongase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ERG28	YER044C	Endoplasmic reticulum membrane protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
ERR2	YPL281C	Enolase, a phosphopyruvate hydratase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ADE17	YMR120C	Enzyme of 'de novo' purine biosynthesis	regulation	1	1	1	DNA to cDNA expression microarray evidence
SOP4	YJL192C	ER-membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DER1	YBR201W	ER membrane protein that promotes export of misfolded polypeptides	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SEC10	YLR166C	Essential 100kDa subunit of the exocyst complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIM23	YNR017W	Essential component of the TIM23 complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIM17	YJL143W	Essential component of the TIM23 complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
RLI1	YDR091C	Essential Fe-S protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
MPS2	YGL075C	Essential membrane protein localized at nuclear envelope and SPBs	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPN8	YOR261C	Essential non-ATPase regulatory subunit of the 26S proteasome	regulation	1	1	1	DNA to cDNA expression microarray evidence
MOT1	YPL082C	Essential protein involved in regulation of transcription	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PXR1	YGR280C	Essential protein involved in rRNA and snoRNA maturation	regulation	1	1	1	DNA to cDNA expression microarray evidence
TIM10	YHR005C-A	Essential protein of the mitochondrial intermembrane space	regulation	1	1	1	DNA to cDNA expression microarray evidence
ERG20	YJL167W	Farnesyl pyrophosphate synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ELO2	YCR034W	Fatty acid elongase, involved in sphingolipid biosynthesis	regulation	1	1	1	DNA to cDNA expression microarray evidence
SKP2	YNL311C	F-box protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ENB1	YOL158C	Ferric enterobactin transmembrane transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FRE1	YLR214W	Ferric reductase and cupric reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
FLC1	YPL221W	Flavin adenine dinucleotide transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SDH1	YKL148C	Flavoprotein subunit of succinate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FKH2	YNL068C	Forkhead family transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADE6	YGR061C	Formylglycinamidine-ribonucleotide (FGAM)-synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS31	YLR167W	Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin	regulation	1	1	1	DNA to cDNA expression microarray evidence
CLN3	YAL040C	G1 cyclin involved in cell cycle progression	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GSH1	YJL101C	Gamma glutamylcysteine synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ECM38	YLR299W	Gamma-glutamyltranspeptidase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TEF4	YKL081W	Gamma subunit of translational elongation factor eEF1B	regulation	1	1	1	DNA to cDNA expression microarray evidence
PSA1	YDL055C	GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TUP1	YCR084C	General repressor of transcription in complex with Cyc8p	regulation	1	1	1	DNA to cDNA expression microarray evidence
GLK1	YCL040W	Glucokinase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR099C	YMR099C	Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADH2	YMR303C	Glucose-repressible alcohol dehydrogenase II	regulation	1	1	1	DNA to cDNA expression microarray evidence
RGT1	YKL038W	Glucose-responsive transcription factor	regulation	1	1	1	DNA to cDNA expression microarray evidence
TDH1	YJL052W	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1	regulation	1	1	1	DNA to cDNA expression microarray evidence
TDH2	YJR009C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2	regulation	1	1	1	DNA to cDNA expression microarray evidence
GUT1	YHL032C	Glycerol kinase	regulation	1	1	1	DNA to cDNA expression microarray evidence
GPC1	YGR149W	Glycerophosphocholine acyltransferase (GPCAT)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GLG2	YJL137C	Glycogenin glucosyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
EGT2	YNL327W	Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase	regulation	1	1	1	DNA to cDNA expression microarray evidence
VRG4	YGL225W	Golgi GDP-mannose transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
NCW2	YLR194C	GPI-anchored protein involved in cell wall remodeling	regulation	1	1	1	DNA to cDNA expression microarray evidence
ECM33	YBR078W	GPI-anchored protein involved in efficient glucose uptake	regulation	1	1	1	DNA to cDNA expression microarray evidence
GEA2	YEL022W	Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SEC12	YNR026C	Guanine nucleotide exchange factor (GEF)	regulation	1	1	1	DNA to cDNA expression microarray evidence
GUK1	YDR454C	Guanylate kinase	regulation	1	1	1	DNA to cDNA expression microarray evidence
HPF1	YOL155C	Haze-protective mannoprotein	regulation	1	1	1	DNA to cDNA expression microarray evidence
YHR218W	YHR218W	Helicase-like protein encoded within the telomeric Y' element	regulation	1	1	1	DNA to cDNA expression microarray evidence
YEL077C	YEL077C	Helicase-like protein encoded within the telomeric Y' element	regulation	1	1	1	DNA to cDNA expression microarray evidence
HXK1	YFR053C	Hexokinase isoenzyme 1	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HXK2	YGL253W	Hexokinase isoenzyme 2	regulation	1	1	1	DNA to cDNA expression microarray evidence
PMR1	YGL167C	High affinity Ca2+/Mn2+ P-type ATPase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HXT6	YDR343C	High-affinity glucose transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PHO84	YML123C	High-affinity inorganic phosphate (Pi) transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
FTR1	YER145C	High affinity iron permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TNA1	YGR260W	High affinity nicotinic acid plasma membrane permease	regulation	1	1	1	DNA to cDNA expression microarray evidence
NHP6A	YPR052C	High-mobility group (HMG) protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
RTT109	YLL002W	Histone acetyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NOP1	YDL014W	Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus	regulation	1	1	1	DNA to cDNA expression microarray evidence
HTA2	YBL003C	Histone H2A	regulation	1	1	1	DNA to cDNA expression microarray evidence
HTB2	YBL002W	Histone H2B	regulation	1	1	1	DNA to cDNA expression microarray evidence
HTZ1	YOL012C	Histone variant H2AZ	regulation	1	1	1	DNA to cDNA expression microarray evidence
YEN1	YER041W	Holliday junction resolvase	regulation	1	1	1	DNA to cDNA expression microarray evidence
LYS12	YIL094C	Homo-isocitrate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SSC1	YJR045C	Hsp70 family ATPase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SSA2	YLL024C	HSP70 family ATP-binding protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
IMD2	YHR216W	Inosine monophosphate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
IMD3	YLR432W	Inosine monophosphate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
IMD4	YML056C	Inosine monophosphate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
RRT6	YGL146C	Integral membrane protein, member of the p24 family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OPY2	YPR075C	Integral membrane protein that acts as a membrane anchor for Ste50p	regulation	1	1	1	DNA to cDNA expression microarray evidence
SFT1	YKL006C-A	Intra-Golgi v-SNARE	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SND3	YBR106W	Involved in SRP-independent protein targeting to the ER	regulation	1	1	1	DNA to cDNA expression microarray evidence
LEU1	YGL009C	Isopropylmalate isomerase	regulation	1	1	1	DNA to cDNA expression microarray evidence
NMD5	YJR132W	Karyopherin	regulation	1	1	1	DNA to cDNA expression microarray evidence
KAP122	YGL016W	Karyopherin beta	regulation	1	1	1	DNA to cDNA expression microarray evidence
SLK19	YOR195W	Kinetochore-associated protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
BNA5	YLR231C	Kynureninase	regulation	1	1	1	DNA to cDNA expression microarray evidence
BNA4	YBL098W	Kynurenine 3-monooxygenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ERG11	YHR007C	Lanosterol 14-alpha-demethylase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NIP100	YPL174C	Large subunit of the dynactin complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
PRY1	YJL079C	Lipid binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AST2	YER101C	Lipid raft associated protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CAR2	YLR438W	L-ornithine transaminase (OTAse)	regulation	1	1	1	DNA to cDNA expression microarray evidence
PHO87	YCR037C	Low-affinity inorganic phosphate (Pi) transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
PHO91	YNR013C	Low-affinity vacuolar phosphate transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ICT1	YLR099C	Lysophosphatidic acid acyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SMP1	YBR182C	MADS-box transcription factor involved in osmotic stress response	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PET9	YBL030C	Major ADP/ATP carrier of the mitochondrial inner membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIP1	YBR067C	Major cell wall mannoprotein with possible lipase activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DLD1	YDL174C	Major mitochondrial D-lactate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SRL1	YOR247W	Mannoprotein that exhibits a tight association with the cell wall	regulation	1	1	1	DNA to cDNA expression microarray evidence
PBS2	YJL128C	MAP kinase kinase of the HOG signaling pathway	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IME1	YJR094C	Master regulator of meiosis that is active only during meiotic events	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AFB1	YLR040C	MATalpha-specific a-factor blocker	regulation	1	1	1	DNA to cDNA expression microarray evidence
MFA1	YDR461W	Mating pheromone a-factor	regulation	1	1	1	DNA to cDNA expression microarray evidence
HOP2	YGL033W	Meiosis-specific protein that localizes to chromosomes	regulation	1	1	1	DNA to cDNA expression microarray evidence
ERC1	YHR032W	Member of the multi-drug and toxin extrusion (MATE) family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SYF1	YDR416W	Member of the NineTeen Complex (NTC)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HMF1	YER057C	Member of the p14.5 protein family	regulation	1	1	1	DNA to cDNA expression microarray evidence
ERP2	YAL007C	Member of the p24 family involved in ER to Golgi transport	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAU7	YAR020C	Member of the seripauperin multigene family	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAU3	YCR104W	Member of the seripauperin multigene family	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAU5	YFL020C	Member of the seripauperin multigene family	regulation	1	1	1	DNA to cDNA expression microarray evidence
MRL1	YPR079W	Membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IZH3	YLR023C	Membrane protein involved in zinc ion homeostasis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FMT1	YBL013W	Methionyl-tRNA formyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MVD1	YNR043W	Mevalonate pyrophosphate decarboxylase	regulation	1	1	1	DNA to cDNA expression microarray evidence
BIK1	YCL029C	Microtubule-associated protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDC6	YGR087C	Minor isoform of pyruvate decarboxylase	regulation	1	1	1	DNA to cDNA expression microarray evidence
PDC5	YLR134W	Minor isoform of pyruvate decarboxylase	regulation	1	1	1	DNA to cDNA expression microarray evidence
MRM2	YGL136C	Mitochondrial 2' O-ribose methyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ALD4	YOR374W	Mitochondrial aldehyde dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
FMP40	YPL222W	Mitochondrial AMPylator in the pseudokinase selenoprotein-O family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SLM5	YCR024C	Mitochondrial asparaginyl-tRNA synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
BAT1	YHR208W	Mitochondrial branched-chain amino acid (BCAA) aminotransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
DIC1	YLR348C	Mitochondrial dicarboxylate carrier	regulation	1	1	1	DNA to cDNA expression microarray evidence
NDE1	YMR145C	Mitochondrial external NADH dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FLX1	YIL134W	Mitochondrial flavin adenine dinucleotide transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
GUT2	YIL155C	Mitochondrial glycerol-3-phosphate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
CRC1	YOR100C	Mitochondrial inner membrane carnitine transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OAC1	YKL120W	Mitochondrial inner membrane transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
ACP1	YKL192C	Mitochondrial matrix acyl carrier protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
HSP10	YOR020C	Mitochondrial matrix co-chaperonin	regulation	1	1	1	DNA to cDNA expression microarray evidence
VPS73	YGL104C	Mitochondrial protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MMF1	YIL051C	Mitochondrial protein required for transamination of isoleucine	regulation	1	1	1	DNA to cDNA expression microarray evidence
MRPL49	YJL096W	Mitochondrial ribosomal protein of the large subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MRP20	YDR405W	Mitochondrial ribosomal protein of the large subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MRPL24	YMR193W	Mitochondrial ribosomal protein of the large subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MSC6	YOR354C	Multicopy suppressor of HER2 involved in mitochondrial translation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HIS4	YCL030C	Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase	regulation	1	1	1	DNA to cDNA expression microarray evidence
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BDH1	YAL060W	NAD-dependent (R,R)-butanediol dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YNL134C	YNL134C	NADH-dependent aldehyde reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLL056C	YLL056C	NADH-dependent aldehyde reductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NAT4	YMR069W	N alpha-acetyl-transferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MTH1	YDR277C	Negative regulator of the glucose-sensing signal transduction pathway	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PNC1	YGL037C	Nicotinamidase that converts nicotinamide to nicotinic acid	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHB1	YGR234W	Nitric oxide oxidoreductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
TIM21	YGR033C	Nonessential component of the TIM23 complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LIN1	YHR156C	Non-essential component of U5 snRNP	regulation	1	1	1	DNA to cDNA expression microarray evidence
IES5	YER092W	Non-essential INO80 chromatin remodeling complex subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ECM8	YBR076W	Non-essential protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ECM13	YBL043W	Non-essential protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YAR075W	YAR075W	Non-functional protein with homology IMP dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ADE1	YAR015W	N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
SOK2	YMR016C	Nuclear protein that negatively regulates pseudohyphal differentiation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CSR2	YPR030W	Nuclear ubiquitin protein ligase binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MRE11	YMR224C	Nuclease subunit of the MRX complex with Rad50p and Xrs2p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UTP25	YIL091C	Nucleolar protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
NOP12	YOL041C	Nucleolar protein involved in pre-25S rRNA processing	regulation	1	1	1	DNA to cDNA expression microarray evidence
SRP40	YKR092C	Nucleolar serine-rich protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NUP2	YLR335W	Nucleoporin involved in nucleocytoplasmic transport	regulation	1	1	1	DNA to cDNA expression microarray evidence
SRM1	YGL097W	Nucleotide exchange factor for Gsp1p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PIR1	YKL164C	O-glycosylated protein required for cell wall stability	regulation	1	1	1	DNA to cDNA expression microarray evidence
HSP78	YDR258C	Oligomeric mitochondrial matrix chaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PHO11	YAR071W	One of three repressible acid phosphatases	regulation	1	1	1	DNA to cDNA expression microarray evidence
PHO12	YHR215W	One of three repressible acid phosphatases	regulation	1	1	1	DNA to cDNA expression microarray evidence
UGO1	YDR470C	Outer membrane component of the mitochondrial fusion machinery	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SHR5	YOL110W	Palmitoyltransferase subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CPR4	YCR069W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	regulation	1	1	1	DNA to cDNA expression microarray evidence
ZEO1	YOL109W	Peripheral membrane protein of the plasma membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PEX27	YOR193W	Peripheral peroxisomal membrane protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
VBA3	YCL069W	Permease of basic amino acids in the vacuolar membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MDH3	YDL078C	Peroxisomal malate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YCH1	YGR203W	Phosphatase with sequence similarity to Mih1p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CHO2	YGR157W	Phosphatidylethanolamine methyltransferase (PEMT)	regulation	1	1	1	DNA to cDNA expression microarray evidence
CSR1	YLR380W	Phosphatidylinositol transfer protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
PGM1	YKL127W	Phosphoglucomutase, minor isoform	regulation	1	1	1	DNA to cDNA expression microarray evidence
ATG15	YCR068W	Phospholipase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PLB2	YMR006C	Phospholipase B (lysophospholipase) involved in lipid metabolism	regulation	1	1	1	DNA to cDNA expression microarray evidence
PLB1	YMR008C	Phospholipase B (lysophospholipase) involved in lipid metabolism	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SEC53	YFL045C	Phosphomannomutase	regulation	1	1	1	DNA to cDNA expression microarray evidence
PDR15	YDR406W	Plasma membrane ATP binding cassette (ABC) transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDR12	YPL058C	Plasma membrane ATP-binding cassette (ABC) transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RGT2	YDL138W	Plasma membrane high glucose sensor that regulates glucose transport	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP12	YFL014W	Plasma membrane protein involved in maintaining membrane organization	regulation	1	1	1	DNA to cDNA expression microarray evidence
GUP1	YGL084C	Plasma membrane protein involved in remodeling GPI anchors	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VBA5	YKR105C	Plasma membrane protein of the Major Facilitator Superfamily (MFS)	regulation	1	1	1	DNA to cDNA expression microarray evidence
SYG1	YIL047C	Plasma membrane protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IZH2	YOL002C	Plasma membrane receptor for plant antifungal osmotin	regulation	1	1	1	DNA to cDNA expression microarray evidence
DUR3	YHL016C	Plasma membrane transporter for both urea and polyamines	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
QDR2	YIL121W	Plasma membrane transporter of the major facilitator superfamily	regulation	1	1	1	DNA to cDNA expression microarray evidence
OLA1	YBR025C	P-loop ATPase with similarity to human OLA1 and bacterial YchF	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR210W	YDR210W	Predicted tail-anchored plasma membrane protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
ECM2	YBR065C	Pre-mRNA splicing factor	regulation	1	1	1	DNA to cDNA expression microarray evidence
PUT4	YOR348C	Proline permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHR020W	YHR020W	Prolyl-tRNA synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
GPG1	YGL121C	Proposed gamma subunit of the heterotrimeric G protein	regulation	1	1	1	quantitative reverse transcription polymerase chain reaction evidence
GAR1	YHR089C	Protein component of the H/ACA snoRNP pseudouridylase complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS11B	YBR048W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS22B	YLR367W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS16A	YMR143W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS16B	YDL083C	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS21A	YKR057W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS26B	YER131W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS27A	YKL156W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS27B	YHR021C	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS29A	YLR388W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS8B	YER102W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS9A	YPL081W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS5	YJR123W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS20	YHL015W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS14B	YJL191W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
STP4	YDL048C	Protein containing a Kruppel-type zinc-finger domain	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDI1	YCL043C	Protein disulfide isomerase	regulation	1	1	1	DNA to cDNA expression microarray evidence
FIR1	YER032W	Protein involved in 3' mRNA processing	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RTA1	YGR213C	Protein involved in 7-aminocholesterol resistance	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RAX1	YOR301W	Protein involved in establishing bud site selection	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NFU1	YKL040C	Protein involved in Fe-S cluster transfer to mitochondrial clients	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GDS1	YOR355W	Protein involved in histone H4 acetylation at ribosomal protein genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
IBA57	YJR122W	Protein involved in incorporating iron-sulfur clusters into proteins	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MYG1	YER156C	Protein involved in mitochondrial function	regulation	1	1	1	DNA to cDNA expression microarray evidence
RAD34	YDR314C	Protein involved in nucleotide excision repair (NER)	regulation	1	1	1	DNA to cDNA expression microarray evidence
NOB1	YOR056C	Protein involved in proteasomal and 40S ribosomal subunit biogenesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
STF1	YDL130W-A	Protein involved in regulation of the mitochondrial F1F0-ATP synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DOT6	YER088C	Protein involved in rRNA and ribosome biogenesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SIR1	YKR101W	Protein involved in silencing at mating-type loci HML and HMR	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GPI2	YPL076W	Protein involved in the synthesis of GlcNAc-PI	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RRN5	YLR141W	Protein involved in transcription of rDNA by RNA polymerase I	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ZRG8	YER033C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LOT5	YKL183W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CUE4	YML101C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YCP4	YCR004C	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
PNS1	YOR161C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RGI2	YIL057C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YKR041W	YKR041W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPR148C	YPR148C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RFS1	YBR052C	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAU14	YIL176C	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAU16	YKL224C	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAU20	YOL161C	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAU21	YOR394W	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR050C	YGR050C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MSC1	YML128C	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
ICS2	YBR157C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RTC4	YNL254C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UTR5	YEL035C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AIM20	YIL158W	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR162W	YLR162W	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
SDD1	YEL057C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YER158C	YER158C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR257W	YLR257W	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
BSC4	YNL269W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATG41	YPL250C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FYV12	YOR183W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FYV8	YGR196C	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
SGM1	YJR134C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BSC5	YNR069C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YKL033W-A	YKL033W-A	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
PAU10	YDR542W	Protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
ECM19	YLR390W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AIM9	YER080W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UGX2	YDL169C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR295C	YMR295C	Protein of unknown function that associates with ribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TMA10	YLR327C	Protein of unknown function that associates with ribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LSM12	YHR121W	Protein of unknown function that may function in RNA processing	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBL028C	YBL028C	Protein of unknown function that may interact with ribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR179C	YLR179C	Protein of unknown function with similarity to Tfs1p	regulation	1	1	1	DNA to cDNA expression microarray evidence
PMT4	YJR143C	Protein O-mannosyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
PMT2	YAL023C	Protein O-mannosyltransferase of the ER membrane	regulation	1	1	1	DNA to cDNA expression microarray evidence
COX19	YLL018C-A	Protein required for cytochrome c oxidase assembly	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COX11	YPL132W	Protein required for delivery of copper to Cox1p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPG4	YMR107W	Protein required for high temperature survival during stationary phase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SCS3	YGL126W	Protein required for normal ER membrane biosynthesis in response to ER	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FAF1	YIL019W	Protein required for pre-rRNA processing	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TMA19	YKL056C	Protein that associates with ribosomes	regulation	1	1	1	DNA to cDNA expression microarray evidence
AIM7	YDR063W	Protein that interacts with Arp2/3 complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DIF1	YLR437C	Protein that regulates nuclear import of Rnr2p and Rnr4p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RAD55	YDR076W	Protein that stimulates strand exchange	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPL2	YHR136C	Protein with similarity to cyclin-dependent kinase inhibitors	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPS5	YGL259W	Protein with similarity to GPI-anchored aspartic proteases	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HMS2	YJR147W	Protein with similarity to heat shock transcription factors	regulation	1	1	1	DNA to cDNA expression microarray evidence
MCH4	YOL119C	Protein with similarity to mammalian monocarboxylate permeases	regulation	1	1	1	DNA to cDNA expression microarray evidence
ENA1	YDR040C	P-type ATPase sodium pump	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PUF2	YPR042C	PUF family mRNA-binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDH1	YPR002W	Putative 2-methylcitrate dehydratase	regulation	1	1	1	DNA to cDNA expression microarray evidence
RIX7	YLL034C	Putative ATPase of the AAA family	regulation	1	1	1	DNA to cDNA expression microarray evidence
ADP1	YCR011C	Putative ATP-dependent permease of the ABC transporter family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FLC2	YAL053W	Putative calcium channel involved in calcium release under hypotonic	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FRE6	YLL051C	Putative ferric reductase with similarity to Fre2p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NOG2	YNR053C	Putative GTPase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR283C	YGR283C	Putative methyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TDA3	YHR009C	Putative oxidoreductase involved in late endosome to Golgi transport	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MNN4	YKL201C	Putative positive regulator of mannosylphosphate transferase Mnn6p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR365C	YOR365C	Putative protein involved in sphingolipid biosynthesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YJL027C	YJL027C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR265C	YMR265C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR242W-A	YMR242W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGL188C-A	YGL188C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIL055C	YIL055C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR111W	YLR111W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR255C	YLR255C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPL080C	YPL080C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YKL097C	YKL097C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IRC13	YOR235W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YFL015C	YFL015C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YCR025C	YCR025C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPR014C	YPR014C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BRP1	YGL007W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR209C	YDR209C	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR274C	YDR274C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YEL008W	YEL008W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR082C	YMR082C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR122C	YMR122C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LCL1	YPL056C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YCL042W	YCL042W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHR033W	YHR033W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YNL193W	YNL193W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YJL107C	YJL107C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR117C	YGR117C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR385W	YOR385W	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
HTC1	YPL067C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YKL063C	YKL063C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPL162C	YPL162C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YCR087C-A	YCR087C-A	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
RRT15	YLR162W-A	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
RRT14	YIL127C	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJR015W	YJR015W	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YEL073C	YEL073C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LCL2	YLR104W	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YNL144C	YNL144C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FMP23	YBR047W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR387C	YOR387C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YFR018C	YFR018C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBL044W	YBL044W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YJL043W	YJL043W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR085W	YMR085W	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YOR338W	YOR338W	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR035C	YGR035C	Putative protein of unknown function, potential Cdc28p substrate	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HXT16	YJR158W	Putative transmembrane polyol transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
CIN10	YDR387C	Putative transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPQ1	YOL092W	Putative vacuolar membrane transporter for cationic amino acids	regulation	1	1	1	DNA to cDNA expression microarray evidence
EDS1	YBR033W	Putative zinc cluster protein, predicted to be a transcription factor	regulation	1	1	1	DNA to cDNA expression microarray evidence
PYC1	YGL062W	Pyruvate carboxylase isoform	regulation	1	1	1	DNA to cDNA expression microarray evidence
BNA6	YFR047C	Quinolinate phosphoribosyl transferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
GSP1	YLR293C	Ran GTPase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ATG19	YOL082W	Receptor protein for the cytoplasm-to-vacuole targeting (Cvt) pathway	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATG34	YOL083W	Receptor protein involved in selective autophagy during starvation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ILV6	YCL009C	Regulatory subunit of acetolactate synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
VTC2	YFL004W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
VTC3	YPL019C	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
VTC1	YER072W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
PHO5	YBR093C	Repressible acid phosphatase	regulation	1	1	1	DNA to cDNA expression microarray evidence
PHO8	YDR481C	Repressible vacuolar alkaline phosphatase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YOP1	YPR028W	Reticulon-interacting protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
YAR009C	YAR009C	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR035C-A	YLR035C-A	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJR027W	YJR027W	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJR029W	YJR029W	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YML039W	YML039W	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YML045W	YML045W	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR045C	YMR045C	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR050C	YMR050C	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YOL103W-B	YOL103W-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YOR192C-B	YOR192C-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPR158C-D	YPR158C-D	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPR158W-B	YPR158W-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YBL005W-B	YBL005W-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR098C-B	YDR098C-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR316W-B	YDR316W-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR161C-D	YGR161C-D	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YHR214C-B	YHR214C-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR170W-A	YDR170W-A	Retrotransposon TYA Gag gene	regulation	1	1	1	DNA to cDNA expression microarray evidence
YAR010C	YAR010C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR261C-C	YDR261C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJL114W	YJL114W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJR026W	YJR026W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJR028W	YJR028W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR157C-A	YLR157C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR227W-A	YLR227W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR256W-A	YLR256W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR410W-A	YLR410W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YML045W-A	YML045W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YML040W	YML040W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR046C	YMR046C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR051C	YMR051C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YNL054W-A	YNL054W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YNL284C-A	YNL284C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YOL103W-A	YOL103W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YOR192C-A	YOR192C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YBL005W-A	YBL005W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YBR012W-A	YBR012W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YCL020W	YCL020W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR098C-A	YDR098C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR210W-A	YDR210W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR261W-A	YDR261W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR316W-A	YDR316W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR365W-A	YDR365W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR034C-C	YDR034C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YER137C-A	YER137C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YER159C-A	YER159C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YFL002W-B	YFL002W-B	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR161C-C	YGR161C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR161W-A	YGR161W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR027W-A	YGR027W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR038C-A	YGR038C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YHL009W-A	YHL009W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YHR214C-C	YHR214C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
GIC2	YDR309C	Rho-family GTPase interacting protein and Cdc42p effector	regulation	1	1	1	DNA to cDNA expression microarray evidence
RNH201	YNL072W	Ribonuclease H2 catalytic subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RNR4	YGR180C	Ribonucleotide-diphosphate reductase (RNR) small subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RNR2	YJL026W	Ribonucleotide-diphosphate reductase (RNR), small subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
SML1	YML058W	Ribonucleotide reductase inhibitor	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL10	YLR075W	Ribosomal 60S subunit protein L10	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL13A	YDL082W	Ribosomal 60S subunit protein L13A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL14A	YKL006W	Ribosomal 60S subunit protein L14A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL14B	YHL001W	Ribosomal 60S subunit protein L14B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL15B	YMR121C	Ribosomal 60S subunit protein L15B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL19B	YBL027W	Ribosomal 60S subunit protein L19B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL1A	YPL220W	Ribosomal 60S subunit protein L1A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL1B	YGL135W	Ribosomal 60S subunit protein L1B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL21B	YPL079W	Ribosomal 60S subunit protein L21B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL22A	YLR061W	Ribosomal 60S subunit protein L22A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL26A	YLR344W	Ribosomal 60S subunit protein L26A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL26B	YGR034W	Ribosomal 60S subunit protein L26B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL27A	YHR010W	Ribosomal 60S subunit protein L27A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL27B	YDR471W	Ribosomal 60S subunit protein L27B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL28	YGL103W	Ribosomal 60S subunit protein L28	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL3	YOR063W	Ribosomal 60S subunit protein L3	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL30	YGL030W	Ribosomal 60S subunit protein L30	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL31A	YDL075W	Ribosomal 60S subunit protein L31A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL31B	YLR406C	Ribosomal 60S subunit protein L31B	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL32	YBL092W	Ribosomal 60S subunit protein L32	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL33A	YPL143W	Ribosomal 60S subunit protein L33A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL37A	YLR185W	Ribosomal 60S subunit protein L37A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL41A	YDL184C	Ribosomal 60S subunit protein L41A	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL42A	YNL162W	Ribosomal 60S subunit protein L42A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL43A	YPR043W	Ribosomal 60S subunit protein L43A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL43B	YJR094W-A	Ribosomal 60S subunit protein L43B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL4A	YBR031W	Ribosomal 60S subunit protein L4A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL4B	YDR012W	Ribosomal 60S subunit protein L4B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL7B	YPL198W	Ribosomal 60S subunit protein L7B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL8B	YLL045C	Ribosomal 60S subunit protein L8A	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL9B	YNL067W	Ribosomal 60S subunit protein L9B	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPS23A	YGR118W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPP1B	YDL130W	Ribosomal protein P1 beta	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPP2B	YDR382W	Ribosomal protein P2 beta	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPP1A	YDL081C	Ribosomal stalk protein P1 alpha	regulation	1	1	1	DNA to cDNA expression microarray evidence
SNU13	YEL026W	RNA binding protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
HEK2	YBL032W	RNA binding protein involved in asymmetric localization of ASH1 mRNA	regulation	1	1	1	DNA to cDNA expression microarray evidence
RRP5	YMR229C	RNA binding protein involved in synthesis of 18S and 5.8S rRNAs	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NAB3	YPL190C	RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LYS9	YNR050C	Saccharopine dehydrogenase (NADP+, L-glutamate-forming)	regulation	1	1	1	DNA to cDNA expression microarray evidence
SAH1	YER043C	S-adenosyl-L-homocysteine hydrolase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SAM4	YPL273W	S-adenosylmethionine-homocysteine methyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SAM2	YDR502C	S-adenosylmethionine synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SAM1	YLR180W	S-adenosylmethionine synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
TYE7	YOR344C	Serine-rich protein that contains a bHLH DNA binding motif	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PTK2	YJR059W	Serine/threonine protein kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC13	YDL220C	Single stranded DNA-binding protein found at TG1-3 telomere G-tails	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RAD2	YGR258C	Single-stranded DNA endonuclease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP26	YBR072W	Small heat shock protein (sHSP) with chaperone activity	regulation	1	1	1	DNA to cDNA expression microarray evidence
CPA1	YOR303W	Small subunit of carbamoyl phosphate synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SPE3	YPR069C	Spermidine synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SUR2	YDR297W	Sphinganine C4-hydroxylase	regulation	1	1	1	DNA to cDNA expression microarray evidence
PRP31	YGR091W	Splicing factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RIM1	YCR028C-A	ssDNA-binding protein essential for mitochondrial genome maintenance	regulation	1	1	1	DNA to cDNA expression microarray evidence
YSP2	YDR326C	Sterol-binding protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
PRY2	YKR013W	Sterol binding protein involved in the export of acetylated sterols	regulation	1	1	1	DNA to cDNA expression microarray evidence
MSN4	YKL062W	Stress-responsive transcriptional activator	regulation	1	1	1	DNA to cDNA expression microarray evidence
GID11	YLR149C	Substrate receptor of the glucose-induced degradation-deficient (GID)	regulation	1	1	1	DNA to cDNA expression microarray evidence
QCR2	YPR191W	Subunit 2 of ubiquinol cytochrome-c reductase (Complex III)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VMA6	YLR447C	Subunit d of the V0 integral membrane domain of V-ATPase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VMA13	YPR036W	Subunit H of the V1 peripheral membrane domain of V-ATPase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SNZ1	YMR096W	Subunit of a two-component pyridoxal-5'-phosphate synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
POP5	YAL033W	Subunit of both RNase MRP and nuclear RNase P	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PRI2	YKL045W	Subunit of DNA primase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YNG2	YHR090C	Subunit of NuA4, an essential histone acetyltransferase complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
EPL1	YFL024C	Subunit of NuA4, an essential histone H4/H2A acetyltransferase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPR2	YIR015W	Subunit of nuclear RNase P	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MAD3	YJL013C	Subunit of spindle-assembly checkpoint complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
TFB3	YDR460W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TFB1	YDR311W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SYC1	YOR179C	Subunit of the APT subcomplex of cleavage and polyadenylation factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CCT5	YJR064W	Subunit of the cytosolic chaperonin Cct ring complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
HSE1	YHL002W	Subunit of the endosomal Vps27p-Hse1p complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HAP5	YOR358W	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GIM3	YNL153C	Subunit of the heterohexameric cochaperone prefoldin complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IES1	YFL013C	Subunit of the INO80 chromatin remodeling complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
LST4	YKL176C	Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ORC2	YBR060C	Subunit of the origin recognition complex (ORC)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ROX3	YBL093C	Subunit of the RNA polymerase II mediator complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPT3	YDR392W	Subunit of the SAGA and SAGA-like transcriptional regulatory complexes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SWI1	YPL016W	Subunit of the SWI/SNF chromatin remodeling complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UTP4	YDR324C	Subunit of U3-containing 90S preribosome and SSU processome complexes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PYP1	YNL010W	Sugar alcohol phosphatase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SRX1	YKL086W	Sulfiredoxin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VAM3	YOR106W	Syntaxin-like vacuolar t-SNARE	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	regulation	1	1	1	DNA to cDNA expression microarray evidence
TOA1	YOR194C	TFIIA large subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
TOA2	YKL058W	TFIIA small subunit	regulation	1	1	1	DNA to cDNA expression microarray evidence
TSA1	YML028W	Thioredoxin peroxidase	regulation	1	1	1	DNA to cDNA expression microarray evidence
GLY1	YEL046C	Threonine aldolase	regulation	1	1	1	DNA to cDNA expression microarray evidence
TAL1	YLR354C	Transaldolase, enzyme in the non-oxidative pentose phosphate pathway	regulation	1	1	1	DNA to cDNA expression microarray evidence
HAA1	YPR008W	Transcriptional activator involved in adaptation to weak acid stress	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MBF1	YOR298C-A	Transcriptional coactivator	regulation	1	1	1	DNA to cDNA expression microarray evidence
WTM1	YOR230W	Transcriptional modulator	regulation	1	1	1	DNA to cDNA expression microarray evidence
MIG3	YER028C	Transcriptional regulator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
XBP1	YIL101C	Transcriptional repressor	regulation	1	1	1	quantitative reverse transcription polymerase chain reaction evidence
NRG1	YDR043C	Transcriptional repressor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
STB5	YHR178W	Transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPI1	YIL119C	Transcription factor, allelic differences between S288C and Sigma1278b	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
KAR4	YCL055W	Transcription factor required for response to pheromones	regulation	1	1	1	DNA to cDNA expression microarray evidence
COM2	YER130C	Transcription factor that binds IME1 Upstream Activation Signal (UAS)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TKL1	YPR074C	Transketolase	regulation	1	1	1	DNA to cDNA expression microarray evidence
TKL2	YBR117C	Transketolase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TEF1	YPR080W	Translational elongation factor EF-1 alpha	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TEF2	YBR118W	Translational elongation factor EF-1 alpha	regulation	1	1	1	DNA to cDNA expression microarray evidence
EFB1	YAL003W	Translation elongation factor 1 beta	regulation	1	1	1	DNA to cDNA expression microarray evidence
YEF3	YLR249W	Translation elongation factor 3	regulation	1	1	1	DNA to cDNA expression microarray evidence
ANB1	YJR047C	Translation elongation factor eIF-5A	regulation	1	1	1	DNA to cDNA expression microarray evidence
HYP2	YEL034W	Translation elongation factor eIF-5A	regulation	1	1	1	DNA to cDNA expression microarray evidence
TIF2	YJL138C	Translation initiation factor eIF4A	regulation	1	1	1	DNA to cDNA expression microarray evidence
TIF1	YKR059W	Translation initiation factor eIF4A	regulation	1	1	1	DNA to cDNA expression microarray evidence
NEW1	YPL226W	Translation termination and ribosome biogenesis factor	regulation	1	1	1	DNA to cDNA expression microarray evidence
ATG39	YLR312C	Transmembrane receptor with a role in nucleophagy	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TRM5	YHR070W	tRNA(m(1)G37)methyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TRM2	YKR056W	tRNA methyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PUS6	YGR169C	tRNA:pseudouridine synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
TEA1	YOR337W	Ty1 enhancer activator involved in Ty enhancer-mediated transcription	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UBI4	YLL039C	Ubiquitin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPL40A	YIL148W	Ubiquitin-ribosomal 60S subunit protein L40A fusion protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
UBP2	YOR124C	Ubiquitin-specific protease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UBP6	YFR010W	Ubiquitin-specific protease	regulation	1	1	1	DNA to cDNA expression microarray evidence
ALG5	YPL227C	UDP-glucose:dolichyl-phosphate glucosyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	regulation	1	1	1	DNA to cDNA expression microarray evidence
ALG7	YBR243C	UDP-N-acetyl-glucosamine-1-P transferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
URA6	YKL024C	Uridylate kinase	regulation	1	1	1	DNA to cDNA expression microarray evidence
VCX1	YDL128W	Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VTC4	YJL012C	Vacuolar membrane polyphosphate polymerase	regulation	1	1	1	DNA to cDNA expression microarray evidence
COT1	YOR316C	Vacuolar transporter that mediates zinc transport into the vacuole	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SNC2	YOR327C	Vesicle membrane receptor protein (v-SNARE)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
XPT1	YJR133W	Xanthine-guanine phosphoribosyl transferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ARG81	YML099C	Zinc finger transcription factor involved in arginine-responsive genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
PPN2	YNL217W	Zn2+-dependent endopolyphosphatase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
REB1	YBR049C	RNA polymerase I enhancer binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MED4	YOR174W	Subunit of the RNA polymerase II mediator complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GLN3	YER040W	Transcriptional activator in nitrogen catabolite repression system	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC73	YLR418C	Component of the Paf1p complex	genetic	1	1	1	Positive Genetic
CLF1	YLR117C	Member of the NineTeen Complex (NTC)	genetic	1	1	1	Negative Genetic
GWT1	YJL091C	Protein involved in the inositol acylation of GlcN-PI	genetic	1	1	1	Positive Genetic
LEO1	YOR123C	Component of the Paf1 complex	genetic	1	1	1	Positive Genetic
GLC7	YER133W	Type 1 S/T protein phosphatase (PP1) catalytic subunit	genetic	1	1	1	Negative Genetic
IKI3	YLR384C	Subunit of Elongator complex	genetic	1	1	1	Negative Genetic
NIP7	YPL211W	Nucleolar protein required for 60S ribosome subunit biogenesis	genetic	1	1	1	Positive Genetic
MMP1	YLL061W	High-affinity S-methylmethionine permease	genetic	1	1	1	Negative Genetic
PEX19	YDL065C	Chaperone and import receptor for newly-synthesized class I PMPs	genetic	1	1	1	Negative Genetic
PRP43	YGL120C	RNA helicase in the DEAH-box family	genetic	1	1	1	Negative Genetic
NSE4	YDL105W	Component of the SMC5-SMC6 complex	genetic	1	1	1	Negative Genetic
BRE1	YDL074C	E3 ubiquitin ligase	genetic	1	1	1	Positive Genetic
FRT2	YAL028W	Tail-anchored ER membrane protein of unknown function	genetic	1	1	1	Negative Genetic
ARL1	YBR164C	Soluble GTPase with a role in regulation of membrane traffic	genetic	1	1	1	Negative Genetic
DBP3	YGL078C	RNA-Dependent ATPase, member of DExD/H-box family	genetic	1	1	1	Positive Genetic
DBP7	YKR024C	Putative ATP-dependent RNA helicase of the DEAD-box family	genetic	1	1	1	Negative Genetic
MAK21	YDR060W	Constituent of 66S pre-ribosomal particles	genetic	1	1	1	Positive Genetic
LSM1	YJL124C	Lsm (Like Sm) protein	genetic	1	1	1	Positive Genetic
NOP1	YDL014W	Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus	genetic	1	1	1	Positive Genetic
DED1	YOR204W	ATP-dependent DEAD-box RNA helicase with strand-annealing activity	genetic	1	1	1	Positive Genetic
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	genetic	1	1	1	Negative Genetic
CBC2	YPL178W	Small subunit of the heterodimeric cap binding complex with Sto1p	genetic	1	1	1	Negative Genetic
ARP7	YPR034W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	genetic	1	1	1	Negative Genetic
NUT1	YGL151W	Component of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
NOP12	YOL041C	Nucleolar protein involved in pre-25S rRNA processing	genetic	1	1	1	Positive Genetic
GCD1	YOR260W	Gamma subunit of the translation initiation factor eIF2B	genetic	1	1	1	Negative Genetic
ACT1	YFL039C	Actin, structural protein in cytoskeleton	genetic	1	1	1	Negative Genetic
KAP95	YLR347C	Karyopherin beta	genetic	1	1	1	Positive Genetic
CFT2	YLR115W	Subunit of the mRNA cleavage and polyadenlylation factor (CPF)	genetic	1	1	1	Negative Genetic
PRE2	YPR103W	Beta 5 subunit of the 20S proteasome	genetic	1	1	1	Positive Genetic
AAR2	YBL074C	Component of the U5 snRNP complex	genetic	1	1	1	Positive Genetic
NAB2	YGL122C	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
NAM7	YMR080C	ATP-dependent RNA helicase of the SFI superfamily	genetic	1	1	1	Positive Genetic
ARC18	YLR370C	Subunit of the ARP2/3 complex	genetic	1	1	1	Negative Genetic
ASF1	YJL115W	Nucleosome assembly factor	genetic	1	1	1	Negative Genetic
BET3	YKR068C	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Negative Genetic
BET2	YPR176C	Beta subunit of Type II geranylgeranyltransferase	genetic	1	1	1	Negative Genetic
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	genetic	1	1	1	Positive Genetic
BEM2	YER155C	Rho GTPase activating protein (RhoGAP)	genetic	1	1	1	Positive Genetic
CDC11	YJR076C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Negative Genetic
CDC3	YLR314C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Positive Genetic
CDC45	YLR103C	DNA replication initiation factor	genetic	1	1	1	Negative Genetic
COP1	YDL145C	Alpha subunit of COPI vesicle coatomer complex	genetic	1	1	1	Negative Genetic
CTF18	YMR078C	Subunit of a complex with Ctf8p	genetic	1	1	1	Dosage Lethality
CUS1	YMR240C	Protein required for assembly of U2 snRNP into the spliceosome	genetic	1	1	1	Negative Genetic
DNA2	YHR164C	ATP-dependent 5'-flap endonuclease and DNA helicase	genetic	1	1	1	Negative Genetic
CIA2	YHR122W	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	genetic	1	1	1	Positive Genetic
DOA1	YKL213C	WD-repeat protein involved in ubiquitin-mediated protein degradation	genetic	1	1	1	Negative Genetic
ELP2	YGR200C	Subunit of Elongator complex	genetic	1	1	1	Negative Genetic
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	genetic	1	1	1	Negative Genetic
EMG1	YLR186W	Methyltransferase for rRNA	genetic	1	1	1	Positive Genetic
ERP1	YAR002C-A	Member of the p24 family involved in ER to Golgi transport	genetic	1	1	1	Negative Genetic
FIP1	YJR093C	Subunit of cleavage polyadenylation factor (CPF)	genetic	1	1	1	Negative Genetic
FAP1	YNL023C	Protein that binds to Fpr1p	genetic	1	1	1	Negative Genetic
FKS1	YLR342W	Catalytic subunit of 1,3-beta-D-glucan synthase	genetic	1	1	1	Negative Genetic
GCN1	YGL195W	Positive regulator of the Gcn2p kinase activity	genetic	1	1	1	Positive Genetic
CTO1	YCR015C	Protein required for cold tolerance	genetic	1	1	1	Negative Genetic
BDF2	YDL070W	Protein involved in transcription initiation	genetic	1	1	1	Negative Genetic
HHF1	YBR009C	Histone H4	physical	1	1	1	Affinity Capture-MS
HHF2	YNL030W	Histone H4	physical	1	1	1	Affinity Capture-MS
HHF2	YNL030W	Histone H4	genetic	1	1	1	Negative Genetic
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	physical	1	1	1	Affinity Capture-RNA
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	genetic	1	1	1	Negative Genetic
ISW2	YOR304W	ATP-dependent DNA translocase involved in chromatin remodeling	genetic	1	1	1	Positive Genetic
KRR1	YCL059C	Nucleolar protein required for rRNA synthesis and ribosomal assembly	genetic	1	1	1	Positive Genetic
MAK3	YPR051W	Catalytic subunit of the NatC type N-terminal acetyltransferase (NAT)	genetic	1	1	1	Negative Genetic
MBP1	YDL056W	Transcription factor	genetic	1	1	1	Synthetic Rescue
MCD1	YDL003W	Essential alpha-kleisin subunit of the cohesin complex	genetic	1	1	1	Negative Genetic
MCM5	YLR274W	Component of the Mcm2-7 hexameric helicase complex	genetic	1	1	1	Negative Genetic
CSE2	YNR010W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
GAL11	YOL051W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Synthetic Rescue
FAB1	YFR019W	1-phosphatidylinositol-3-phosphate 5-kinase	genetic	1	1	1	Negative Genetic
BUD3	YCL014W	Guanine nucleotide exchange factor (GEF) for Cdc42p	genetic	1	1	1	Positive Genetic
MSH2	YOL090W	Protein that binds to DNA mismatches	genetic	1	1	1	Negative Genetic
MEC1	YBR136W	Genome integrity checkpoint protein and PI kinase superfamily member	physical	1	1	1	Biochemical Activity
MEC1	YBR136W	Genome integrity checkpoint protein and PI kinase superfamily member	genetic	1	1	1	Dosage Lethality
MPH1	YIR002C	3'-5' DNA helicase involved in error-free bypass of DNA lesions	genetic	1	1	1	Negative Genetic
CMR1	YDL156W	Nuclear protein with role in transcription, protein quality control	physical	1	1	1	Affinity Capture-MS
MYO2	YOR326W	Type V myosin motor involved in actin-based transport of cargos	genetic	1	1	1	Negative Genetic
HTZ1	YOL012C	Histone variant H2AZ	genetic	1	1	1	Negative Genetic
NHP6B	YBR089C-A	High-mobility group (HMG) protein	physical	1	1	1	PCA
NUP60	YAR002W	FG-nucleoporin component of central core of the nuclear pore complex	genetic	1	1	1	Positive Genetic
HSP42	YDR171W	Small heat shock protein (sHSP) with chaperone activity	physical	1	1	1	Two-hybrid
AFG2	YLR397C	ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex	genetic	1	1	1	Negative Genetic
PCF11	YDR228C	mRNA 3' end processing factor	genetic	1	1	1	Negative Genetic
PDA1	YER178W	E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex	genetic	1	1	1	Negative Genetic
POP7	YBR167C	Subunit of RNase MRP, nuclear RNase P and telomerase	genetic	1	1	1	Negative Genetic
PRE4	YFR050C	Beta 7 subunit of the 20S proteasome	genetic	1	1	1	Negative Genetic
HTA1	YDR225W	Histone H2A	physical	1	1	1	Affinity Capture-MS
LEA1	YPL213W	Component of U2 snRNP complex	genetic	1	1	1	Positive Genetic
PAA1	YDR071C	Polyamine acetyltransferase	genetic	1	1	1	Negative Genetic
NAB6	YML117W	Putative RNA-binding protein	genetic	1	1	1	Positive Genetic
HTA2	YBL003C	Histone H2A	physical	1	1	1	Affinity Capture-MS
MVD1	YNR043W	Mevalonate pyrophosphate decarboxylase	genetic	1	1	1	Negative Genetic
NOP14	YDL148C	Nucleolar protein	genetic	1	1	1	Negative Genetic
RAD16	YBR114W	Nucleotide excision repair (NER) protein	genetic	1	1	1	Negative Genetic
DEP1	YAL013W	Component of the Rpd3L histone deacetylase complex	genetic	1	1	1	Negative Genetic
CSN9	YDR179C	Subunit of the Cop9 signalosome	genetic	1	1	1	Negative Genetic
PCI8	YIL071C	Possible shared subunit of Cop9 signalosome (CSN) and eIF3	genetic	1	1	1	Positive Genetic
OPI1	YHL020C	Transcriptional regulator of a variety of genes	genetic	1	1	1	Negative Genetic
HOS2	YGL194C	Histone deacetylase and subunit of Set3 and Rpd3L complexes	genetic	1	1	1	Negative Genetic
PRP9	YDL030W	Subunit of the SF3a splicing factor complex	genetic	1	1	1	Positive Genetic
BRR1	YPR057W	snRNP protein component of spliceosomal snRNPs	genetic	1	1	1	Positive Genetic
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	genetic	1	1	1	Negative Genetic
NEW1	YPL226W	Translation termination and ribosome biogenesis factor	genetic	1	1	1	Negative Genetic
KTR5	YNL029C	Putative mannosyltransferase involved in protein glycosylation	genetic	1	1	1	Negative Genetic
LTE1	YAL024C	Protein similar to GDP/GTP exchange factors	genetic	1	1	1	Negative Genetic
BCK1	YJL095W	MAPKKK acting in the protein kinase C signaling pathway	genetic	1	1	1	Positive Genetic
FUN30	YAL019W	Snf2p family member with ATP-dependent chromatin remodeling activity	genetic	1	1	1	Negative Genetic
DOT6	YER088C	Protein involved in rRNA and ribosome biogenesis	genetic	1	1	1	Positive Genetic
GET3	YDL100C	Guanine nucleotide exchange factor for Gpa1p	genetic	1	1	1	Negative Genetic
CAB5	YDR196C	Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC)	genetic	1	1	1	Positive Genetic
CMS1	YLR003C	Putative subunit of the 90S preribosome processome complex	genetic	1	1	1	Negative Genetic
AIM17	YHL021C	Protein of unknown function	genetic	1	1	1	Negative Genetic
CDC13	YDL220C	Single stranded DNA-binding protein found at TG1-3 telomere G-tails	genetic	1	1	1	Positive Genetic
GAS1	YMR307W	Beta-1,3-glucanosyltransferase required for cell wall assembly	genetic	1	1	1	Positive Genetic
IRA2	YOL081W	GTPase-activating protein	genetic	1	1	1	Positive Genetic
ATG29	YPL166W	Autophagy-specific protein	genetic	1	1	1	Negative Genetic
CNB1	YKL190W	Calcineurin B	genetic	1	1	1	Negative Genetic
PBS2	YJL128C	MAP kinase kinase of the HOG signaling pathway	genetic	1	1	1	Negative Genetic
OYE3	YPL171C	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	genetic	1	1	1	Negative Genetic
KOG1	YHR186C	Subunit of TORC1	genetic	1	1	1	Positive Genetic
PMA2	YPL036W	Plasma membrane H+-ATPase	genetic	1	1	1	Negative Genetic
GET1	YGL020C	Subunit of the GET complex	genetic	1	1	1	Positive Genetic
DIP5	YPL265W	Dicarboxylic amino acid permease	genetic	1	1	1	Negative Genetic
COF1	YLL050C	Cofilin, involved in pH-dependent actin filament depolarization	genetic	1	1	1	Positive Genetic
PAC11	YDR488C	Dynein intermediate chain, microtubule motor protein	genetic	1	1	1	Negative Genetic
FUM1	YPL262W	Fumarase	genetic	1	1	1	Positive Genetic
CDC20	YGL116W	Activator of anaphase-promoting complex/cyclosome (APC/C)	genetic	1	1	1	Negative Genetic
DAS1	YJL149W	Putative SCF ubiquitin ligase F-box protein	genetic	1	1	1	Negative Genetic
FHL1	YPR104C	Regulator of ribosomal protein (RP) transcription	physical	1	1	1	Affinity Capture-Western
LRO1	YNR008W	Acyltransferase that converts diacylglycerol to triacylglycerol (TGA)	genetic	1	1	1	Negative Genetic
CIN8	YEL061C	Bipolar kinesin motor protein	genetic	1	1	1	Synthetic Rescue
MCX1	YBR227C	Non-proteolytic ATPase of the AAA family	genetic	1	1	1	Negative Genetic
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	genetic	1	1	1	Negative Genetic
HIR2	YOR038C	Subunit of HIR nucleosome assembly complex	genetic	1	1	1	Negative Genetic
HHO1	YPL127C	Histone H1, linker histone with roles in meiosis and sporulation	genetic	1	1	1	Negative Genetic
CTF4	YPR135W	Chromatin-associated protein	genetic	1	1	1	Negative Genetic
RAD50	YNL250W	Subunit of MRX complex with Mre11p and Xrs2p	genetic	1	1	1	Synthetic Growth Defect
BCK2	YER167W	Serine/threonine-rich protein involved in PKC1 signaling pathway	genetic	1	1	1	Negative Genetic
FPK1	YNR047W	Ser/Thr protein kinase	genetic	1	1	1	Negative Genetic
CLB2	YPR119W	B-type cyclin involved in cell cycle progression	genetic	1	1	1	Synthetic Rescue
HAP3	YBL021C	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	genetic	1	1	1	Positive Genetic
RAD7	YJR052W	Nucleotide excision repair (NER) protein	genetic	1	1	1	Synthetic Rescue
PTC2	YER089C	Type 2C protein phosphatase (PP2C)	genetic	1	1	1	Negative Genetic
LIF1	YGL090W	Component of the DNA ligase IV complex	genetic	1	1	1	Synthetic Growth Defect
MEH1	YKR007W	Subunit of the EGO/GSE complex	genetic	1	1	1	Positive Genetic
LOS1	YKL205W	Nuclear pore protein	genetic	1	1	1	Negative Genetic
IST3	YIR005W	Component of the U2 snRNP	genetic	1	1	1	Positive Genetic
NUP53	YMR153W	FG-nucleoporin component of central core of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-Western
ADH6	YMR318C	NADPH-dependent medium chain alcohol dehydrogenase	genetic	1	1	1	Negative Genetic
GCR2	YNL199C	Transcriptional activator of genes involved in glycolysis	physical	1	1	1	Affinity Capture-Western
GCR2	YNL199C	Transcriptional activator of genes involved in glycolysis	genetic	1	1	1	Synthetic Growth Defect
PHO86	YJL117W	Endoplasmic reticulum (ER) resident protein	genetic	1	1	1	Negative Genetic
GAL2	YLR081W	Galactose permease	genetic	1	1	1	Negative Genetic
ERG11	YHR007C	Lanosterol 14-alpha-demethylase	genetic	1	1	1	Negative Genetic
EXG1	YLR300W	Major exo-1,3-beta-glucanase of the cell wall	genetic	1	1	1	Negative Genetic
MMS22	YLR320W	Subunit of E3 ubiquitin ligase complex involved in replication repair	genetic	1	1	1	Negative Genetic
FMP48	YGR052W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	genetic	1	1	1	Negative Genetic
CUE5	YOR042W	Ubiquitin-binding protein	genetic	1	1	1	Negative Genetic
BIT2	YBR270C	Subunit of TORC2 membrane-associated complex	genetic	1	1	1	Negative Genetic
DDI1	YER143W	Aspartic-type endopeptidase	genetic	1	1	1	Positive Genetic
BUD27	YFL023W	Unconventional prefoldin protein involved in translation initiation	genetic	1	1	1	Positive Genetic
GLG2	YJL137C	Glycogenin glucosyltransferase	genetic	1	1	1	Negative Genetic
CUP2	YGL166W	Copper-binding transcription factor	genetic	1	1	1	Positive Genetic
IRE1	YHR079C	Serine-threonine kinase and endoribonuclease	genetic	1	1	1	Negative Genetic
ATG39	YLR312C	Transmembrane receptor with a role in nucleophagy	genetic	1	1	1	Negative Genetic
MSN5	YDR335W	Karyopherin	genetic	1	1	1	Negative Genetic
NUF2	YOL069W	Component of the kinetochore-associated Ndc80 complex	genetic	1	1	1	Negative Genetic
CLG1	YGL215W	Cyclin-like protein that interacts with Pho85p	genetic	1	1	1	Negative Genetic
PCL9	YDL179W	Cyclin	genetic	1	1	1	Negative Genetic
PKC1	YBL105C	Protein serine/threonine kinase	genetic	1	1	1	Positive Genetic
ATG27	YJL178C	Type I membrane protein involved in autophagy and the Cvt pathway	genetic	1	1	1	Negative Genetic
MRX16	YDR132C	Protein that associates with the large mitoribosomal subunit	genetic	1	1	1	Negative Genetic
PNS1	YOR161C	Protein of unknown function	genetic	1	1	1	Negative Genetic
LAM6	YLR072W	Sterol transporter that transfers sterols between membranes	genetic	1	1	1	Negative Genetic
PIR5	YJL160C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
ELP6	YMR312W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	genetic	1	1	1	Negative Genetic
BLI1	YKL061W	Subunit of the BLOC-1 complex involved in endosomal maturation	genetic	1	1	1	Negative Genetic
CUB1	YPL260W	Conserved fungal gene linked to DNA repair and proteasome function	genetic	1	1	1	Negative Genetic
BOS1	YLR078C	v-SNARE (vesicle specific SNAP receptor)	genetic	1	1	1	Negative Genetic
APC5	YOR249C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	1	1	1	Positive Genetic
CDC27	YBL084C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	1	1	1	Positive Genetic
COG7	YGL005C	Component of the conserved oligomeric Golgi complex	genetic	1	1	1	Negative Genetic
ELP3	YPL086C	Subunit of Elongator complex	genetic	1	1	1	Negative Genetic
ELP4	YPL101W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	genetic	1	1	1	Negative Genetic
BRE5	YNR051C	Ubiquitin protease cofactor	genetic	1	1	1	Negative Genetic
NHP6A	YPR052C	High-mobility group (HMG) protein	physical	1	1	1	PCA
NHP6A	YPR052C	High-mobility group (HMG) protein	genetic	1	1	1	Positive Genetic
LEU3	YLR451W	Zinc-knuckle transcription factor, repressor and activator	genetic	1	1	1	Negative Genetic
HPC2	YBR215W	Subunit of the HIR complex	genetic	1	1	1	Negative Genetic
CBF1	YJR060W	Basic helix-loop-helix (bHLH) protein	genetic	1	1	1	Negative Genetic
CTF8	YHR191C	Subunit of a complex with Ctf18p	genetic	1	1	1	Negative Genetic
DBF4	YDR052C	Regulatory subunit of Cdc7p-Dbf4p kinase complex	genetic	1	1	1	Negative Genetic
ELO2	YCR034W	Fatty acid elongase, involved in sphingolipid biosynthesis	genetic	1	1	1	Positive Genetic
HNT1	YDL125C	Adenosine 5'-monophosphoramidase	genetic	1	1	1	Negative Genetic
IOC2	YLR095C	Subunit of the Isw1b complex	genetic	1	1	1	Negative Genetic
BIK1	YCL029C	Microtubule-associated protein	genetic	1	1	1	Negative Genetic
OST2	YOR103C	Epsilon subunit of the oligosaccharyltransferase complex	genetic	1	1	1	Negative Genetic
OST3	YOR085W	Gamma subunit of the oligosaccharyltransferase complex of the ER lumen	genetic	1	1	1	Positive Genetic
PHO80	YOL001W	Cyclin	genetic	1	1	1	Positive Genetic
RAD5	YLR032W	DNA helicase/Ubiquitin ligase	genetic	1	1	1	Negative Genetic
BET1	YIL004C	Type II membrane protein required for vesicular transport	genetic	1	1	1	Negative Genetic
ZDS2	YML109W	Protein with a role in regulating Swe1p-dependent polarized growth	physical	1	1	1	Two-hybrid
SIR1	YKR101W	Protein involved in silencing at mating-type loci HML and HMR	physical	1	1	1	Co-localization
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	physical	1	1	1	Affinity Capture-MS
TAF1	YGR274C	TFIID subunit, involved in RNA pol II transcription initiation	physical	1	1	1	Affinity Capture-Western
TAF6	YGL112C	Subunit (60 kDa) of TFIID and SAGA complexes	physical	1	1	1	Reconstituted Complex
SWI3	YJL176C	Subunit of the SWI/SNF chromatin remodeling complex	genetic	1	1	1	Positive Genetic
SNF6	YHL025W	Subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Reconstituted Complex
SNF2	YOR290C	Catalytic subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-Western
TAF12	YDR145W	Subunit (61/68 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-Western
TAF4	YMR005W	TFIID subunit (48 kDa)	genetic	1	1	1	Synthetic Lethality
TRA1	YHR099W	Subunit of SAGA and NuA4 histone acetyltransferase complexes	physical	1	1	1	Co-localization
SPT10	YJL127C	Histone H3 acetylase with a role in transcriptional regulation	physical	1	1	1	Affinity Capture-MS
RVB1	YDR190C	ATP-dependent DNA helicase, also known as pontin	physical	1	1	1	Affinity Capture-MS
RPC82	YPR190C	RNA polymerase III subunit C82	physical	1	1	1	Affinity Capture-MS
TEL1	YBL088C	Protein kinase primarily involved in telomere length regulation	physical	1	1	1	Biochemical Activity
TEL1	YBL088C	Protein kinase primarily involved in telomere length regulation	genetic	1	1	1	Dosage Lethality
RET1	YOR207C	Second-largest subunit of RNA polymerase III	physical	1	1	1	Affinity Capture-MS
TFC6	YDR362C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Affinity Capture-MS
TFC6	YDR362C	Subunit of RNA polymerase III transcription initiation factor complex	genetic	1	1	1	Negative Genetic
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-Western
RNR1	YER070W	Major isoform of large subunit of ribonucleotide-diphosphate reductase	genetic	1	1	1	Synthetic Rescue
SDS3	YIL084C	Component of the Rpd3L histone deacetylase complex	genetic	1	1	1	Synthetic Rescue
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	genetic	1	1	1	Synthetic Rescue
SKO1	YNL167C	Basic leucine zipper transcription factor of the ATF/CREB family	genetic	1	1	1	Dosage Rescue
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	genetic	1	1	1	Negative Genetic
SDC1	YDR469W	Subunit of the COMPASS (Set1C) complex	genetic	1	1	1	Phenotypic Suppression
SPT2	YER161C	Protein involved in negative regulation of transcription	genetic	1	1	1	Negative Genetic
SAS5	YOR213C	Subunit of the SAS complex (Sas2p, Sas4p, Sas5p)	genetic	1	1	1	Negative Genetic
VPS75	YNL246W	NAP family histone chaperone	genetic	1	1	1	Negative Genetic
THP2	YHR167W	Subunit of the THO and TREX complexes	genetic	1	1	1	Negative Genetic
SSN2	YDR443C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
SET5	YHR207C	Methyltransferase involved in methylation of histone H4 Lys5, -8, -12	genetic	1	1	1	Negative Genetic
YML119W	YML119W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
SPT8	YLR055C	Subunit of the SAGA transcriptional regulatory complex	genetic	1	1	1	Positive Genetic
SRB2	YHR041C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Positive Genetic
SPT3	YDR392W	Subunit of the SAGA and SAGA-like transcriptional regulatory complexes	genetic	1	1	1	Positive Genetic
SWD3	YBR175W	Essential subunit of the COMPASS (Set1C) complex	genetic	1	1	1	Positive Genetic
YAR029W	YAR029W	Member of DUP240 gene family but contains no transmembrane domains	genetic	1	1	1	Negative Genetic
URA7	YBL039C	Major CTP synthase isozyme (see also URA8)	genetic	1	1	1	Negative Genetic
SCT1	YBL011W	Glycerol 3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase	genetic	1	1	1	Negative Genetic
SWC5	YBR231C	Component of the SWR1 complex	genetic	1	1	1	Negative Genetic
RER1	YCL001W	Protein involved in retention of membrane proteins	genetic	1	1	1	Negative Genetic
YCL001W-A	YCL001W-A	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
TVS1	YCR061W	Protein of unknown function	genetic	1	1	1	Negative Genetic
RXT3	YDL076C	Component of the Rpd3L histone deacetylase complex	genetic	1	1	1	Negative Genetic
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	genetic	1	1	1	Negative Genetic
VPS41	YDR080W	Subunit of the HOPS endocytic tethering complex	genetic	1	1	1	Negative Genetic
SWF1	YDR126W	Palmitoyltransferase that acts on transmembrane proteins	genetic	1	1	1	Positive Genetic
SAS4	YDR181C	Subunit of the SAS complex (Sas2p, Sas4p, Sas5p)	genetic	1	1	1	Negative Genetic
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	genetic	1	1	1	Negative Genetic
YDR239C	YDR239C	Protein of unknown function	genetic	1	1	1	Negative Genetic
RTT103	YDR289C	Protein involved in transcription termination by RNA polymerase II	genetic	1	1	1	Negative Genetic
VPS60	YDR486C	Protein involved in late endosome to vacuole transport	genetic	1	1	1	Positive Genetic
RTR1	YER139C	Dual specificity protein phosphatase	genetic	1	1	1	Positive Genetic
RPO41	YFL036W	Mitochondrial RNA polymerase	genetic	1	1	1	Negative Genetic
SAP155	YFR040W	Protein required for function of the Sit4p protein phosphatase	genetic	1	1	1	Negative Genetic
SUT1	YGL162W	Zn(II)2Cys6 family transcription factor	genetic	1	1	1	Negative Genetic
SNF4	YGL115W	Activating gamma subunit of the AMP-activated Snf1p kinase complex	genetic	1	1	1	Negative Genetic
YGK1	YGL101W	5'-deoxynucleotidase	genetic	1	1	1	Negative Genetic
YGL081W	YGL081W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
UPF3	YGR072W	Component of the nonsense-mediated mRNA decay (NMD) pathway	genetic	1	1	1	Positive Genetic
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	genetic	1	1	1	Negative Genetic
UBA4	YHR111W	E1-like protein that activates Urm1p before urmylation	genetic	1	1	1	Negative Genetic
SOL3	YHR163W	6-phosphogluconolactonase	genetic	1	1	1	Negative Genetic
SSP1	YHR184W	Protein involved in the control of meiotic nuclear division	genetic	1	1	1	Negative Genetic
SSM4	YIL030C	Membrane-embedded ubiquitin-protein ligase and retrotranslocase	genetic	1	1	1	Negative Genetic
VID28	YIL017C	GID Complex subunit, serves as adaptor for regulatory subunit Vid24p	genetic	1	1	1	Negative Genetic
RPS21B	YJL136C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
YJU3	YKL094W	Monoglyceride lipase (MGL) that hydrolyzes fatty acid ethyl esters	genetic	1	1	1	Negative Genetic
SPT23	YKL020C	ER membrane protein involved in regulation of OLE1 transcription	genetic	1	1	1	Positive Genetic
SIS2	YKR072C	Negative regulatory subunit of protein phosphatase 1 (Ppz1p)	genetic	1	1	1	Negative Genetic
SKG1	YKR100C	Transmembrane protein with a role in cell wall polymer composition	genetic	1	1	1	Negative Genetic
THI73	YLR004C	Putative plasma membrane permease	genetic	1	1	1	Negative Genetic
RPS0B	YLR048W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Positive Genetic
SND2	YLR065C	Protein involved in SRP-independent targeting of substrates to the ER	genetic	1	1	1	Negative Genetic
XDJ1	YLR090W	Chaperone with a role in facilitating mitochondrial protein import	genetic	1	1	1	Negative Genetic
REX3	YLR107W	RNA exonuclease	genetic	1	1	1	Negative Genetic
STM1	YLR150W	Protein required for optimal translation under nutrient stress	genetic	1	1	1	Positive Genetic
YLR152C	YLR152C	Putative protein of unknown function	genetic	1	1	1	Positive Genetic
ROM2	YLR371W	Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p	genetic	1	1	1	Positive Genetic
VID22	YLR373C	G-quadruplex (G4) DNA binding protein	genetic	1	1	1	Negative Genetic
SEI1	YLR404W	Seipin involved in lipid droplet (LD) assembly	genetic	1	1	1	Negative Genetic
VIP1	YLR410W	Bifunctional inositol pyrophosphate kinase and phosphatase	genetic	1	1	1	Negative Genetic
YMD8	YML038C	Putative nucleotide sugar transporter	genetic	1	1	1	Negative Genetic
SUB1	YMR039C	Transcriptional regulator	genetic	1	1	1	Positive Genetic
SCS7	YMR272C	Sphingolipid alpha-hydroxylase	genetic	1	1	1	Negative Genetic
TOP1	YOL006C	Topoisomerase I	genetic	1	1	1	Positive Genetic
WHI5	YOR083W	Repressor of G1 transcription	genetic	1	1	1	Negative Genetic
YOR131C	YOR131C	Putative haloacid dehalogenase-like hydrolase	genetic	1	1	1	Negative Genetic
THP3	YPR045C	Protein that may have a role in transcription elongation	genetic	1	1	1	Positive Genetic
SPE3	YPR069C	Spermidine synthase	genetic	1	1	1	Negative Genetic
SKI3	YPR189W	Ski complex component and TPR protein	genetic	1	1	1	Positive Genetic
SGE1	YPR198W	Plasma membrane multidrug transporter	genetic	1	1	1	Negative Genetic
TGS1	YPL157W	Trimethyl guanosine synthase, conserved nucleolar methyl transferase	genetic	1	1	1	Phenotypic Suppression
YKU70	YMR284W	Subunit of the telomeric Ku complex (Yku70p-Yku80p)	genetic	1	1	1	Phenotypic Enhancement
RAT1	YOR048C	Nuclear 5' to 3' single-stranded RNA exonuclease	genetic	1	1	1	Phenotypic Enhancement
RPO21	YDL140C	RNA polymerase II largest subunit B220	genetic	1	1	1	Phenotypic Enhancement
TTI1	YKL033W	Subunit of the ASTRA complex, involved in chromatin remodeling	genetic	1	1	1	Positive Genetic
STT3	YGL022W	Catalytic subunit of the oligosaccharyltransferase complex of the ER l	genetic	1	1	1	Positive Genetic
SKI6	YGR195W	Exosome non-catalytic core component	genetic	1	1	1	Positive Genetic
SEC12	YNR026C	Guanine nucleotide exchange factor (GEF)	genetic	1	1	1	Positive Genetic
SMP3	YOR149C	Alpha 1,2-mannosyltransferase	genetic	1	1	1	Positive Genetic
RPB2	YOR151C	RNA polymerase II second largest subunit B150	genetic	1	1	1	Positive Genetic
SLA1	YBL007C	Cytoskeletal protein binding protein	genetic	1	1	1	Positive Genetic
SEA4	YBL104C	Subunit of SEACAT, a subcomplex of the SEA complex	genetic	1	1	1	Positive Genetic
REI1	YBR267W	Cytoplasmic pre-60S factor	genetic	1	1	1	Positive Genetic
RIM1	YCR028C-A	ssDNA-binding protein essential for mitochondrial genome maintenance	genetic	1	1	1	Positive Genetic
RDS1	YCR106W	Putative zinc cluster transcription factor	genetic	1	1	1	Positive Genetic
YDL012C	YDL012C	Tail-anchored plasma membrane protein with a conserved CYSTM module	genetic	1	1	1	Positive Genetic
VAM6	YDL077C	Guanine nucleotide exchange factor for the GTPase Gtr1p	genetic	1	1	1	Positive Genetic
RPL13A	YDL082W	Ribosomal 60S subunit protein L13A	genetic	1	1	1	Positive Genetic
RDI1	YDL135C	Rho GDP dissociation inhibitor	genetic	1	1	1	Positive Genetic
RPL24A	YGL031C	Ribosomal 60S subunit protein L24A	genetic	1	1	1	Positive Genetic
RPA34	YJL148W	RNA polymerase I subunit A34.5	genetic	1	1	1	Positive Genetic
RPS14B	YJL191W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Positive Genetic
RCY1	YJL204C	F-box protein involved in recycling endocytosed proteins	genetic	1	1	1	Positive Genetic
SPE1	YKL184W	Ornithine decarboxylase	genetic	1	1	1	Positive Genetic
YPT7	YML001W	Rab family GTPase	genetic	1	1	1	Positive Genetic
RPS10B	YMR230W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Positive Genetic
YOR012W	YOR012W	Putative protein of unknown function	genetic	1	1	1	Positive Genetic
SKI7	YOR076C	GTP-binding protein that couples the Ski complex and exosome	genetic	1	1	1	Positive Genetic
VPS30	YPL120W	Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II	genetic	1	1	1	Positive Genetic
YAR1	YPL239W	Nucleocytoplasmic shuttling assembly chaperone	genetic	1	1	1	Positive Genetic
TFC3	YAL001C	Subunit of RNA polymerase III transcription initiation factor complex	genetic	1	1	1	Negative Genetic
RPB5	YBR154C	RNA polymerase subunit ABC27	genetic	1	1	1	Negative Genetic
TRS20	YBR254C	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Negative Genetic
TSC10	YBR265W	3-ketosphinganine reductase	genetic	1	1	1	Negative Genetic
SNU23	YDL098C	Component of the U4/U6.U5 snRNP complex	genetic	1	1	1	Negative Genetic
YRB1	YDR002W	Ran GTPase binding protein	genetic	1	1	1	Negative Genetic
RPC11	YDR045C	RNA polymerase III subunit C11	genetic	1	1	1	Negative Genetic
SLU7	YDR088C	RNA splicing factor	genetic	1	1	1	Negative Genetic
SLY1	YDR189W	Hydrophilic protein involved in ER/Golgi vesicle trafficking	genetic	1	1	1	Negative Genetic
TCP1	YDR212W	Alpha subunit of chaperonin-containing T-complex	genetic	1	1	1	Negative Genetic
TRS23	YDR246W	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Negative Genetic
TFB1	YDR311W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	genetic	1	1	1	Negative Genetic
UTP5	YDR398W	Subunit of U3-containing Small Subunit (SSU) processome complex	genetic	1	1	1	Negative Genetic
RET2	YFR051C	Delta subunit of the coatomer complex (COPI)	genetic	1	1	1	Negative Genetic
SLD3	YGL113W	Protein involved in the initiation of DNA replication	genetic	1	1	1	Negative Genetic
SEC27	YGL137W	Essential beta'-coat protein of the COPI coatomer	genetic	1	1	1	Negative Genetic
SWC4	YGR002C	Component of the Swr1p complex that incorporates Htz1p into chromatin	genetic	1	1	1	Negative Genetic
SMD1	YGR074W	Core Sm protein Sm D1	genetic	1	1	1	Negative Genetic
SMC3	YJL074C	Subunit of the multiprotein cohesin complex	genetic	1	1	1	Negative Genetic
SUI2	YJR007W	Alpha subunit of the translation initiation factor eIF2	genetic	1	1	1	Negative Genetic
SSL1	YLR005W	Subunit of the core form of RNA polymerase transcription factor TFIIH	genetic	1	1	1	Negative Genetic
STU2	YLR045C	Microtubule polymerase of the XMAP215/Dis1 family	genetic	1	1	1	Negative Genetic
SEC22	YLR268W	R-SNARE protein	genetic	1	1	1	Negative Genetic
YHC1	YLR298C	Component of the U1 snRNP complex required for pre-mRNA splicing	genetic	1	1	1	Negative Genetic
TAF11	YML015C	TFIID subunit (40 kDa)	genetic	1	1	1	Negative Genetic
VTI1	YMR197C	Protein involved in cis-Golgi membrane traffic	genetic	1	1	1	Negative Genetic
RNT1	YMR239C	Nuclear dsRNA-specific ribonuclease (RNase III)	genetic	1	1	1	Negative Genetic
TOA1	YOR194C	TFIIA large subunit	genetic	1	1	1	Negative Genetic
RPB8	YOR224C	RNA polymerase subunit ABC14.5	genetic	1	1	1	Negative Genetic
TBF1	YPL128C	Telobox-containing general regulatory factor	genetic	1	1	1	Negative Genetic
SPN1	YPR133C	Protein involved in RNA polymerase II transcription	genetic	1	1	1	Negative Genetic
YBL081W	YBL081W	Non-essential protein of unknown function	genetic	1	1	1	Negative Genetic
TPS1	YBR126C	Synthase subunit of trehalose-6-P synthase/phosphatase complex	genetic	1	1	1	Negative Genetic
RTC2	YBR147W	Putative vacuolar membrane transporter for cationic amino acids	genetic	1	1	1	Negative Genetic
YSY6	YBR162W-A	Protein of unknown function	genetic	1	1	1	Negative Genetic
SEC66	YBR171W	Non-essential subunit of Sec63 complex	genetic	1	1	1	Negative Genetic
RPS6B	YBR181C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
SMP1	YBR182C	MADS-box transcription factor involved in osmotic stress response	genetic	1	1	1	Negative Genetic
TDP1	YBR223C	Tyrosyl-DNA phosphodiesterase I	genetic	1	1	1	Negative Genetic
SLX1	YBR228W	Endonuclease involved in DNA recombination and repair	genetic	1	1	1	Negative Genetic
YBR238C	YBR238C	Mitochondrial membrane protein	genetic	1	1	1	Negative Genetic
SAT4	YCR008W	Ser/Thr protein kinase involved in salt tolerance, nutrient response	genetic	1	1	1	Negative Genetic
RVS161	YCR009C	Amphiphysin-like lipid raft protein	genetic	1	1	1	Negative Genetic
SNT1	YCR033W	Set3C histone deacetylase scaffold	genetic	1	1	1	Negative Genetic
SSK22	YCR073C	MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway	genetic	1	1	1	Negative Genetic
RPP1A	YDL081C	Ribosomal stalk protein P1 alpha	genetic	1	1	1	Negative Genetic
TMA17	YDL110C	Regulatory gamma subunit of fatty acid synthase (FAS)	genetic	1	1	1	Negative Genetic
VCX1	YDL128W	Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity	genetic	1	1	1	Negative Genetic
RPL41B	YDL133C-A	Ribosomal 60S subunit protein L41B	genetic	1	1	1	Negative Genetic
YDL241W	YDL241W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
TRP1	YDR007W	Phosphoribosylanthranilate isomerase	genetic	1	1	1	Negative Genetic
UBC13	YDR092W	E2 ubiquitin-conjugating enzyme	genetic	1	1	1	Negative Genetic
TRS85	YDR108W	Component of transport protein particle (TRAPP) complex III	genetic	1	1	1	Negative Genetic
VBA4	YDR119W	Protein of unknown function	genetic	1	1	1	Negative Genetic
SWI5	YDR146C	Transcription factor that recruits Mediator and Swi/Snf complexes	genetic	1	1	1	Negative Genetic
YPR1	YDR368W	NADPH-dependent aldo-keto reductase	genetic	1	1	1	Negative Genetic
SLX8	YER116C	Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex	genetic	1	1	1	Negative Genetic
RPS26B	YER131W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
YGL140C	YGL140C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
RTF1	YGL244W	Subunit of RNAPII-associated chromatin remodeling Paf1 complex	genetic	1	1	1	Negative Genetic
SLX9	YGR081C	Protein required for pre-rRNA processing	genetic	1	1	1	Negative Genetic
TNA1	YGR260W	High affinity nicotinic acid plasma membrane permease	genetic	1	1	1	Negative Genetic
RNH70	YGR276C	3'-5' exoribonuclease	genetic	1	1	1	Negative Genetic
RRM3	YHR031C	DNA helicase involved in rDNA replication and Ty1 transposition	genetic	1	1	1	Negative Genetic
URM1	YIL008W	Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs	genetic	1	1	1	Negative Genetic
RSM25	YIL093C	Mitochondrial ribosomal protein of the small subunit	genetic	1	1	1	Negative Genetic
TMA108	YIL137C	Ribosome-associated, nascent chain binding factor	genetic	1	1	1	Negative Genetic
YIL152W	YIL152W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YIL161W	YIL161W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
SGN1	YIR001C	Cytoplasmic RNA-binding protein	genetic	1	1	1	Negative Genetic
YIR016W	YIR016W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
SYS1	YJL004C	Integral membrane protein of the Golgi	genetic	1	1	1	Negative Genetic
RTT101	YJL047C	Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex	genetic	1	1	1	Negative Genetic
RPE1	YJL121C	D-ribulose-5-phosphate 3-epimerase	genetic	1	1	1	Negative Genetic
YUR1	YJL139C	Mannosyltransferase involved in protein N-glycosylation	genetic	1	1	1	Negative Genetic
YJL193W	YJL193W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YJL213W	YJL213W	Protein of unknown function that may interact with ribosomes	genetic	1	1	1	Negative Genetic
YMR1	YJR110W	Phosphatidylinositol 3-phosphate (PI3P) phosphatase	genetic	1	1	1	Negative Genetic
TRP3	YKL211C	Indole-3-glycerol-phosphate synthase	genetic	1	1	1	Negative Genetic
VPS51	YKR020W	Component of the GARP (Golgi-associated retrograde protein) complex	genetic	1	1	1	Negative Genetic
SAP190	YKR028W	Protein that forms a complex with the Sit4p protein phosphatase	genetic	1	1	1	Negative Genetic
YKR104W	YKR104W	Putative transporter of the MRP subfamily	genetic	1	1	1	Negative Genetic
RNP1	YLL046C	Ribonucleoprotein that contains two RNA recognition motifs (RRM)	genetic	1	1	1	Negative Genetic
SSK1	YLR006C	Cytoplasmic phosphorelay intermediate osmosensor and regulator	genetic	1	1	1	Negative Genetic
SMF3	YLR034C	Putative divalent metal ion transporter involved in iron homeostasis	genetic	1	1	1	Negative Genetic
YLR053C	YLR053C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
SRN2	YLR119W	Component of the ESCRT-I complex	genetic	1	1	1	Negative Genetic
RNH203	YLR154C	Ribonuclease H2 subunit	genetic	1	1	1	Negative Genetic
UPS1	YLR193C	Phosphatidic acid transfer protein	genetic	1	1	1	Negative Genetic
YKE2	YLR200W	Subunit of the heterohexameric Gim/prefoldin protein complex	genetic	1	1	1	Negative Genetic
YLR415C	YLR415C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	genetic	1	1	1	Negative Genetic
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	genetic	1	1	1	Negative Genetic
YLR456W	YLR456W	Protein of unknown function	genetic	1	1	1	Negative Genetic
YOX1	YML027W	Homeobox transcriptional repressor	genetic	1	1	1	Negative Genetic
RCF1	YML030W	Cytochrome c oxidase subunit	genetic	1	1	1	Negative Genetic
SOK2	YMR016C	Nuclear protein that negatively regulates pseudohyphal differentiation	genetic	1	1	1	Negative Genetic
RIM11	YMR139W	Protein kinase	genetic	1	1	1	Negative Genetic
SIP5	YMR140W	Protein of unknown function	genetic	1	1	1	Negative Genetic
YIM1	YMR152W	Aldehyde reductase	genetic	1	1	1	Negative Genetic
RIM13	YMR154C	Calpain-like cysteine protease	genetic	1	1	1	Negative Genetic
YMR187C	YMR187C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YMR209C	YMR209C	Putative S-adenosylmethionine-dependent methyltransferase	genetic	1	1	1	Negative Genetic
ZRC1	YMR243C	Vacuolar membrane zinc transporter	genetic	1	1	1	Negative Genetic
TRM732	YMR259C	Protein involved in 2'-O-methylation of C32 of substrate tRNAs	genetic	1	1	1	Negative Genetic
YNL034W	YNL034W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YNL035C	YNL035C	Nuclear protein of unknown function	genetic	1	1	1	Negative Genetic
SOL1	YNR034W	Protein with a possible role in tRNA export	genetic	1	1	1	Negative Genetic
YNR061C	YNR061C	Protein of unknown function	genetic	1	1	1	Negative Genetic
YAP7	YOL028C	Transcriptional repressor of nitric oxide oxidase	genetic	1	1	1	Negative Genetic
SMF1	YOL122C	Divalent metal ion transporter	genetic	1	1	1	Negative Genetic
YOL153C	YOL153C	Blocked reading frame, contains two in-frame stops in translation	genetic	1	1	1	Negative Genetic
TSR3	YOR006C	Protein required for 20S pre-rRNA processing	genetic	1	1	1	Negative Genetic
TIR2	YOR010C	Putative cell wall mannoprotein	genetic	1	1	1	Negative Genetic
RTS1	YOR014W	B-type regulatory subunit of protein phosphatase 2A (PP2A)	genetic	1	1	1	Negative Genetic
STD1	YOR047C	Protein involved in control of glucose-regulated gene expression	genetic	1	1	1	Negative Genetic
RSB1	YOR049C	Sphingoid long-chain base (LCB) efflux transporter	genetic	1	1	1	Negative Genetic
YNG1	YOR064C	Subunit of the NuA3 histone acetyltransferase complex	genetic	1	1	1	Negative Genetic
TGL5	YOR081C	Bifunctional triacylglycerol lipase and LPA acyltransferase	genetic	1	1	1	Negative Genetic
TCB1	YOR086C	Lipid-binding ER protein involved in ER-plasma membrane tethering	genetic	1	1	1	Negative Genetic
YOR105W	YOR105W	Protein of unknown function	genetic	1	1	1	Negative Genetic
UBP2	YOR124C	Ubiquitin-specific protease	genetic	1	1	1	Negative Genetic
SIA1	YOR137C	Protein of unassigned function	genetic	1	1	1	Negative Genetic
YRR1	YOR162C	Zn2-Cys6 zinc-finger transcription factor	genetic	1	1	1	Negative Genetic
RUD3	YOR216C	Golgi matrix protein	genetic	1	1	1	Negative Genetic
TMA16	YOR252W	Protein of unknown function that associates with ribosomes	genetic	1	1	1	Negative Genetic
RIM20	YOR275C	Protein involved in proteolytic activation of Rim101p	genetic	1	1	1	Negative Genetic
UBC11	YOR339C	Ubiquitin-conjugating enzyme	genetic	1	1	1	Negative Genetic
YDC1	YPL087W	Alkaline dihydroceramidase, involved in sphingolipid metabolism	genetic	1	1	1	Negative Genetic
YPL150W	YPL150W	Protein kinase of unknown cellular role	genetic	1	1	1	Negative Genetic
RTC6	YPL183W-A	Protein involved in translation	genetic	1	1	1	Negative Genetic
RPL7B	YPL198W	Ribosomal 60S subunit protein L7B	genetic	1	1	1	Negative Genetic
TPK2	YPL203W	cAMP-dependent protein kinase catalytic subunit	genetic	1	1	1	Negative Genetic
SRO7	YPR032W	Effector of Rab GTPase Sec4p	genetic	1	1	1	Negative Genetic
YPR096C	YPR096C	Protein of unknown function	genetic	1	1	1	Negative Genetic
YPR172W	YPR172W	Protein of unknown function	genetic	1	1	1	Negative Genetic
SIR2	YDL042C	Conserved NAD+ dependent histone deacetylase of the Sirtuin family	genetic	1	1	1	Synthetic Growth Defect
PAM18	YLR008C	Subunit of the import motor (PAM complex)	genetic	1	1	1	Negative Genetic
NMD2	YHR077C	Protein involved in the nonsense-mediated mRNA decay (NMD) pathway	genetic	1	1	1	Positive Genetic
CST9	YLR394W	SUMO E3 ligase	genetic	1	1	1	Negative Genetic
GAL4	YPL248C	DNA-binding transcription factor required for activating GAL genes	physical	1	1	1	PCA
MBF1	YOR298C-A	Transcriptional coactivator	genetic	1	1	1	Negative Genetic
NUP170	YBL079W	Subunit of inner ring of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-Western
NUP170	YBL079W	Subunit of inner ring of nuclear pore complex (NPC)	genetic	1	1	1	Positive Genetic
GYP1	YOR070C	Cis-golgi GTPase-activating protein (GAP) for yeast Rabs	genetic	1	1	1	Negative Genetic
POL32	YJR043C	Third subunit of DNA polymerase delta	genetic	1	1	1	Negative Genetic
CHS3	YBR023C	Chitin synthase III	genetic	1	1	1	Negative Genetic
ESC1	YMR219W	Protein involved in telomeric silencing	genetic	1	1	1	Synthetic Rescue
HMT1	YBR034C	Nuclear SAM-dependent mono- and asymmetric methyltransferase	genetic	1	1	1	Negative Genetic
MET28	YIR017C	bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex	genetic	1	1	1	Negative Genetic
MET32	YDR253C	Zinc-finger DNA-binding transcription factor	genetic	1	1	1	Negative Genetic
MID2	YLR332W	O-glycosylated plasma membrane protein	genetic	1	1	1	Negative Genetic
MON1	YGL124C	Subunit of a heterodimeric guanine nucleotide exchange factor (GEF)	genetic	1	1	1	Negative Genetic
HKR1	YDR420W	Mucin family member that functions as an osmosensor in the HOG pathway	genetic	1	1	1	Negative Genetic
AZF1	YOR113W	Zinc-finger transcription factor	genetic	1	1	1	Negative Genetic
PEX27	YOR193W	Peripheral peroxisomal membrane protein	genetic	1	1	1	Negative Genetic
ADY4	YLR227C	Structural component of the meiotic outer plaque	genetic	1	1	1	Negative Genetic
NIP100	YPL174C	Large subunit of the dynactin complex	genetic	1	1	1	Negative Genetic
LRS4	YDR439W	Nucleolar protein that forms a complex with Csm1p	physical	1	1	1	Affinity Capture-MS
ALG5	YPL227C	UDP-glucose:dolichyl-phosphate glucosyltransferase	genetic	1	1	1	Positive Genetic
CQD1	YPL109C	UbiB family mitochondrial protein	genetic	1	1	1	Negative Genetic
CPR7	YJR032W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	genetic	1	1	1	Positive Genetic
ERT1	YBR239C	Transcriptional regulator	genetic	1	1	1	Negative Genetic
HPA2	YPR193C	Tetrameric histone acetyltransferase	genetic	1	1	1	Negative Genetic
BSD2	YBR290W	Heavy metal ion homeostasis protein	genetic	1	1	1	Positive Genetic
PAM16	YJL104W	Subunit of the import motor (PAM complex)	genetic	1	1	1	Negative Genetic
HOC1	YJR075W	Alpha-1,6-mannosyltransferase	genetic	1	1	1	Negative Genetic
MNN11	YJL183W	Subunit of a Golgi mannosyltransferase complex	genetic	1	1	1	Negative Genetic
PAN3	YKL025C	Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex	genetic	1	1	1	Positive Genetic
ARL3	YPL051W	ARF-like small GTPase of the RAS superfamily	genetic	1	1	1	Negative Genetic
ERV14	YGL054C	COPII-coated vesicle protein	genetic	1	1	1	Positive Genetic
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	genetic	1	1	1	Positive Genetic
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	genetic	1	1	1	Positive Genetic
EUC1	YMR111C	Sequence-specific DNA binding protein	genetic	1	1	1	Negative Genetic
PRP24	YMR268C	Splicing factor that reanneals snRNPs during spliceosome recycling	genetic	1	1	1	Positive Genetic
ILV6	YCL009C	Regulatory subunit of acetolactate synthase	genetic	1	1	1	Positive Genetic
MRC1	YCL061C	S-phase checkpoint protein required for DNA replication	genetic	1	1	1	Negative Genetic
PAC1	YOR269W	Regulator of dynein, involved in intracellular transport	genetic	1	1	1	Negative Genetic
CPS1	YJL172W	Vacuolar carboxypeptidase S	genetic	1	1	1	Negative Genetic
PLP1	YDR183W	Protein that interacts with CCT (chaperonin containing TCP-1) complex	genetic	1	1	1	Negative Genetic
ATP18	YML081C-A	Subunit of the mitochondrial F1F0 ATP synthase	genetic	1	1	1	Positive Genetic
BTS1	YPL069C	Geranylgeranyl diphosphate synthase (GGPPS)	genetic	1	1	1	Negative Genetic
HNM1	YGL077C	Plasma membrane transporter for choline, ethanolamine, and carnitine	genetic	1	1	1	Positive Genetic
IFH1	YLR223C	Coactivator, regulates transcription of ribosomal protein (RP) genes	physical	1	1	1	Affinity Capture-Western
MMS1	YPR164W	Subunit of E3 ubiquitin ligase complex involved in replication repair	genetic	1	1	1	Negative Genetic
NDJ1	YOL104C	Protein that regulates meiotic SPB cohesion and telomere clustering	physical	1	1	1	Affinity Capture-MS
GAT2	YMR136W	Protein containing GATA family zinc finger motifs	genetic	1	1	1	Positive Genetic
MSC2	YDR205W	Endoplasmic reticulum zinc transporter	genetic	1	1	1	Negative Genetic
BSC6	YOL137W	Protein of unknown function with 8 putative transmembrane segments	genetic	1	1	1	Negative Genetic
PAM17	YKR065C	Constituent of the TIM23 complex	genetic	1	1	1	Negative Genetic
GPI2	YPL076W	Protein involved in the synthesis of GlcNAc-PI	genetic	1	1	1	Negative Genetic
MSS11	YMR164C	Transcription factor	genetic	1	1	1	Negative Genetic
ASE1	YOR058C	Mitotic spindle midzone-localized microtubule bundling protein	genetic	1	1	1	Negative Genetic
HYR1	YIR037W	Glutathione peroxidase	genetic	1	1	1	Negative Genetic
GLO4	YOR040W	Mitochondrial glyoxalase II	genetic	1	1	1	Negative Genetic
COQ10	YOL008W	Coenzyme Q (ubiquinone) binding protein	genetic	1	1	1	Positive Genetic
FMP23	YBR047W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
GLO2	YDR272W	Cytoplasmic glyoxalase II	genetic	1	1	1	Negative Genetic
PUF4	YGL014W	Member of the PUF protein family	physical	1	1	1	Affinity Capture-RNA
JIP4	YDR475C	Protein of unknown function	genetic	1	1	1	Negative Genetic
PDC2	YDR081C	Transcription factor for thiamine-regulated genes	genetic	1	1	1	Positive Genetic
BRL1	YHR036W	Essential nuclear envelope/ER integral membrane protein	genetic	1	1	1	Negative Genetic
MET12	YPL023C	Protein with MTHFR activity in vitro	genetic	1	1	1	Negative Genetic
PMR1	YGL167C	High affinity Ca2+/Mn2+ P-type ATPase	genetic	1	1	1	Negative Genetic
MSS1	YMR023C	Mitochondrial protein	genetic	1	1	1	Positive Genetic
ETR1	YBR026C	2-enoyl thioester reductase	genetic	1	1	1	Positive Genetic
FTR1	YER145C	High affinity iron permease	genetic	1	1	1	Positive Genetic
CYK3	YDL117W	SH3-domain protein located in the bud neck and cytokinetic actin ring	genetic	1	1	1	Negative Genetic
COA4	YLR218C	Twin Cx(9)C protein involved in cytochrome c oxidase organization	genetic	1	1	1	Negative Genetic
PSP2	YML017W	Asn rich cytoplasmic protein that contains RGG motifs	genetic	1	1	1	Positive Genetic
POC4	YPL144W	Component of a heterodimeric Poc4p-Irc25p chaperone	genetic	1	1	1	Negative Genetic
LAG2	YOL025W	Protein that negatively regulates the SCF E3-ubiquitin ligase	genetic	1	1	1	Positive Genetic
LIP5	YOR196C	Protein involved in biosynthesis of the coenzyme lipoic acid	genetic	1	1	1	Negative Genetic
CUP9	YPL177C	Homeodomain-containing transcriptional repressor	genetic	1	1	1	Negative Genetic
PEX32	YBR168W	Peroxisomal integral membrane protein	genetic	1	1	1	Negative Genetic
OGG1	YML060W	Nuclear and mitochondrial glycosylase/lyase	genetic	1	1	1	Negative Genetic
PRI2	YKL045W	Subunit of DNA primase	genetic	1	1	1	Positive Genetic
OCA5	YHL029C	Cytoplasmic protein required for replication of Brome mosaic virus	genetic	1	1	1	Negative Genetic
ALR2	YFL050C	Probable Mg(2+) transporter	genetic	1	1	1	Negative Genetic
APJ1	YNL077W	Hsp40 chaperone with a role in SUMO-mediated protein degradation	physical	1	1	1	Affinity Capture-MS
AGE2	YIL044C	ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector	genetic	1	1	1	Negative Genetic
HXT10	YFL011W	Hexose transporter	genetic	1	1	1	Negative Genetic
PTK2	YJR059W	Serine/threonine protein kinase	genetic	1	1	1	Negative Genetic
PHO91	YNR013C	Low-affinity vacuolar phosphate transporter	genetic	1	1	1	Negative Genetic
ORM1	YGR038W	Protein that mediates sphingolipid homeostasis	genetic	1	1	1	Negative Genetic
MGR3	YMR115W	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	genetic	1	1	1	Negative Genetic
GAS3	YMR215W	Putative 1,3-beta-glucanosyltransferase	genetic	1	1	1	Negative Genetic
PUF2	YPR042C	PUF family mRNA-binding protein	physical	1	1	1	Affinity Capture-RNA
PIB2	YGL023C	Phosphatidylinositol 3-phosphate binding protein	genetic	1	1	1	Positive Genetic
HUR1	YGL168W	Protein with a role in DNA repair	genetic	1	1	1	Negative Genetic
EOS1	YNL080C	Protein involved in N-glycosylation	genetic	1	1	1	Positive Genetic
CWH43	YCR017C	GPI lipid remodelase	genetic	1	1	1	Positive Genetic
CYT1	YOR065W	Cytochrome c1	genetic	1	1	1	Positive Genetic
POT1	YIL160C	3-ketoacyl-CoA thiolase with broad chain length specificity	genetic	1	1	1	Positive Genetic
RAD57	YDR004W	Protein that stimulates strand exchange	genetic	1	1	1	Negative Genetic
CYC2	YOR037W	Mitochondrial peripheral inner membrane protein	genetic	1	1	1	Positive Genetic
NTG2	YOL043C	DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase	genetic	1	1	1	Negative Genetic
MFG1	YDL233W	Regulator of filamentous growth	genetic	1	1	1	Negative Genetic
AIM34	YMR003W	Protein of unknown function	genetic	1	1	1	Negative Genetic
ILM1	YJR118C	Protein of unknown function	genetic	1	1	1	Positive Genetic
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	genetic	1	1	1	Negative Genetic
CEM1	YER061C	Mitochondrial beta-keto-acyl synthase	genetic	1	1	1	Positive Genetic
PIN2	YOR104W	Exomer-dependent cargo protein	genetic	1	1	1	Negative Genetic
DYN3	YMR299C	Dynein light intermediate chain (LIC)	genetic	1	1	1	Negative Genetic
CHO2	YGR157W	Phosphatidylethanolamine methyltransferase (PEMT)	genetic	1	1	1	Negative Genetic
COX23	YHR116W	Protein that functions in mitochondrial copper homeostasis	genetic	1	1	1	Positive Genetic
MOT3	YMR070W	Transcriptional repressor, activator	genetic	1	1	1	Positive Genetic
MRN1	YPL184C	RNA-binding protein that may be involved in translational regulation	genetic	1	1	1	Negative Genetic
ATG15	YCR068W	Phospholipase	genetic	1	1	1	Positive Genetic
HPT1	YDR399W	Dimeric hypoxanthine-guanine phosphoribosyltransferase	genetic	1	1	1	Negative Genetic
KTR7	YIL085C	Putative mannosyltransferase involved in protein glycosylation	genetic	1	1	1	Negative Genetic
CDC8	YJR057W	Nucleoside monophosphate and nucleoside diphosphate kinase	genetic	1	1	1	Negative Genetic
AGA1	YNR044W	Anchorage subunit of a-agglutinin of a-cells	genetic	1	1	1	Negative Genetic
FIT3	YOR383C	Mannoprotein that is incorporated into the cell wall	genetic	1	1	1	Negative Genetic
ATO2	YNR002C	Putative transmembrane protein involved in export of ammonia	genetic	1	1	1	Negative Genetic
ELO1	YJL196C	Elongase I, medium-chain acyl elongase	genetic	1	1	1	Negative Genetic
PEX4	YGR133W	Peroxisomal ubiquitin conjugating enzyme	genetic	1	1	1	Negative Genetic
IML2	YJL082W	Protein required for clearance of inclusion bodies	genetic	1	1	1	Negative Genetic
PIR1	YKL164C	O-glycosylated protein required for cell wall stability	genetic	1	1	1	Positive Genetic
PRD1	YCL057W	Zinc metalloendopeptidase	genetic	1	1	1	Positive Genetic
LDO45	YMR147W	Putative protein of unknown function	genetic	1	1	1	Positive Genetic
CMC1	YKL137W	Copper-binding protein of the mitochondrial intermembrane space	genetic	1	1	1	Negative Genetic
IGO2	YHR132W-A	Protein required for initiation of G0 program	genetic	1	1	1	Negative Genetic
DPC25	YPL107W	Putative mitochondrial protein of unknown function	genetic	1	1	1	Negative Genetic
GPI10	YGL142C	Integral membrane protein involved in GPI anchor synthesis	genetic	1	1	1	Positive Genetic
HPF1	YOL155C	Haze-protective mannoprotein	genetic	1	1	1	Negative Genetic
MDL2	YPL270W	Mitochondrial inner membrane half-type ABC transporter	genetic	1	1	1	Negative Genetic
EFM4	YIL064W	Lysine methyltransferase	genetic	1	1	1	Negative Genetic
MCT1	YOR221C	Predicted malonyl-CoA:ACP transferase	genetic	1	1	1	Positive Genetic
ICY1	YMR195W	Protein of unknown function	genetic	1	1	1	Negative Genetic
DSD1	YGL196W	D-serine dehydratase (aka D-serine ammonia-lyase)	genetic	1	1	1	Negative Genetic
BER1	YLR412W	Protein involved in microtubule-related processes	genetic	1	1	1	Positive Genetic
LDS2	YOL047C	Protein Involved in spore wall assembly	genetic	1	1	1	Negative Genetic
MOD5	YOR274W	Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase	genetic	1	1	1	Negative Genetic
LEE1	YPL054W	Zinc-finger protein of unknown function	genetic	1	1	1	Negative Genetic
FMP30	YPL103C	Protein with a role in maintaining mitochondrial morphology	genetic	1	1	1	Negative Genetic
DIA3	YDL024C	Protein of unknown function	genetic	1	1	1	Negative Genetic
ENB1	YOL158C	Ferric enterobactin transmembrane transporter	genetic	1	1	1	Negative Genetic
AGP1	YCL025C	Broad-specificity, low-affinity amino acid permease	genetic	1	1	1	Negative Genetic
FLX1	YIL134W	Mitochondrial flavin adenine dinucleotide transporter	genetic	1	1	1	Positive Genetic
PMT7	YDR307W	Putative protein mannosyltransferase similar to Pmt1p	genetic	1	1	1	Negative Genetic
PER1	YCR044C	Protein of the endoplasmic reticulum	genetic	1	1	1	Positive Genetic
MMM1	YLL006W	ER integral membrane protein, ERMES complex subunit	genetic	1	1	1	Positive Genetic
ALG8	YOR067C	Glucosyl transferase	genetic	1	1	1	Positive Genetic
EMC2	YJR088C	Member of conserved ER transmembrane complex	genetic	1	1	1	Negative Genetic
COA6	YMR244C-A	Protein involved in cytochrome c oxidase (Complex IV) assembly	genetic	1	1	1	Negative Genetic
EFM2	YBR271W	S-adenosylmethionine-dependent methyltransferase	genetic	1	1	1	Negative Genetic
NCA2	YPR155C	Protein that regulates expression of Fo-F1 ATP synthase subunits	genetic	1	1	1	Negative Genetic
NGL1	YOL042W	Putative endonuclease	genetic	1	1	1	Positive Genetic
IAH1	YOR126C	Isoamyl acetate-hydrolyzing esterase	genetic	1	1	1	Negative Genetic
LST4	YKL176C	Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p	genetic	1	1	1	Positive Genetic
ICE2	YIL090W	Integral ER membrane protein with type-III transmembrane domains	genetic	1	1	1	Positive Genetic
PDE2	YOR360C	High-affinity cyclic AMP phosphodiesterase	physical	1	1	1	Affinity Capture-MS
NFG1	YLR042C	Cell wall protein of unknown function	genetic	1	1	1	Negative Genetic
MRX11	YPL041C	Protein that associates with mitochondrial ribosome	genetic	1	1	1	Negative Genetic
PCP1	YGR101W	Mitochondrial serine protease	genetic	1	1	1	Negative Genetic
PET20	YPL159C	Mitochondrial protein	genetic	1	1	1	Positive Genetic
APQ12	YIL040W	Nuclear envelope/ER integral membrane protein	genetic	1	1	1	Positive Genetic
IRS4	YKR019C	EH domain-containing protein	genetic	1	1	1	Negative Genetic
IMA5	YJL216C	Alpha-glucosidase	genetic	1	1	1	Negative Genetic
PAU11	YGL261C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
ICS3	YJL077C	Protein with a role in copper homeostasis	genetic	1	1	1	Positive Genetic