GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	physical	18	6	15	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, PCA, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Reconstituted Complex, Co-crystal Structure, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-Western, Affinity Capture-RNA, Reconstituted Complex
EDC3	YEL015W	Non-essential conserved protein with a role in mRNA decapping	physical	12	6	10	Two-hybrid, Two-hybrid, Two-hybrid, Reconstituted Complex, PCA, Affinity Capture-MS, Two-hybrid, Reconstituted Complex, Co-crystal Structure, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	physical	8	5	6	Two-hybrid, Reconstituted Complex, Reconstituted Complex, PCA, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
LSM1	YJL124C	Lsm (Like Sm) protein	physical	7	3	7	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-RNA
DED1	YOR204W	ATP-dependent DEAD-box RNA helicase with strand-annealing activity	physical	6	4	6	PCA, Affinity Capture-MS, PCA, Affinity Capture-RNA, Affinity Capture-Western, Affinity Capture-RNA
CDC39	YCR093W	Subunit of the CCR4-NOT1 core complex	physical	6	3	6	Affinity Capture-Western, PCA, Affinity Capture-RNA, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-RNA
LSM2	YBL026W	Lsm (Like Sm) protein	physical	6	3	6	Affinity Capture-MS, Two-hybrid, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	genetic	6	4	5	Synthetic Growth Defect, Synthetic Lethality, Phenotypic Enhancement, Synthetic Growth Defect, Phenotypic Suppression, Phenotypic Suppression
NGR1	YBR212W	RNA binding protein that negatively regulates growth rate	physical	6	4	3	Two-hybrid, Two-hybrid, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA
DCP1	YOL149W	Subunit of the Dcp1p-Dcp2p decapping enzyme complex	physical	5	5	5	Two-hybrid, Affinity Capture-Western, PCA, Affinity Capture-MS, Affinity Capture-RNA
MOT2	YER068W	Ubiquitin-protein ligase subunit of the CCR4-NOT complex	physical	5	3	5	PCA, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
DEF1	YKL054C	RNAPII degradation factor	physical	5	3	5	PCA, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
LSM7	YNL147W	Lsm (Like Sm) protein	physical	5	2	5	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	genetic	5	4	4	Dosage Lethality, Dosage Rescue, Synthetic Growth Defect, Dosage Rescue, Synthetic Lethality
POP2	YNR052C	Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation	physical	5	3	4	Affinity Capture-Western, Two-hybrid, Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA
EAP1	YKL204W	eIF4E-associated protein, competes with eIF4G for binding to eIF4E	physical	5	2	4	Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-Western, Affinity Capture-Western
LSM6	YDR378C	Lsm (Like Sm) protein	physical	4	3	4	Affinity Capture-MS, PCA, Affinity Capture-MS, Affinity Capture-RNA
LSM4	YER112W	Lsm (Like Sm) protein	physical	4	3	4	Affinity Capture-MS, PCA, Affinity Capture-MS, Affinity Capture-RNA
SRO9	YCL037C	Cytoplasmic RNA-binding protein	physical	4	3	4	PCA, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
MOB1	YIL106W	Component of the mitotic exit network	physical	4	3	4	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA, Proximity Label-MS
HRR25	YPL204W	Conserved casein kinase, monopolin subunit	physical	4	3	4	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA
SEC7	YDR170C	Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors	physical	4	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
XRN1	YGL173C	Evolutionarily-conserved 5'-3' exonuclease	physical	4	2	4	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
TIF2	YJL138C	Translation initiation factor eIF4A	physical	4	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-MS
MPT5	YGL178W	mRNA-binding protein of the PUF family	physical	4	2	4	PCA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPN11	YFR004W	Metalloprotease subunit of 19S regulatory particle	physical	4	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
RPL16A	YIL133C	Ribosomal 60S subunit protein L16A	physical	4	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
POR1	YNL055C	Mitochondrial porin (voltage-dependent anion channel)	physical	4	2	4	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
HSP104	YLL026W	Disaggregase	physical	4	2	4	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	physical	4	2	4	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	physical	4	2	4	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-MS
RPL33B	YOR234C	Ribosomal 60S subunit protein L33B	physical	4	2	4	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
CDC60	YPL160W	Cytosolic leucyl tRNA synthetase	physical	4	2	4	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
ATG13	YPR185W	Regulatory subunit of the Atg1p signaling complex	physical	4	1	4	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIS11	YLR136C	mRNA-binding protein expressed during iron starvation	physical	4	3	3	Two-hybrid, Affinity Capture-RNA, Two-hybrid, PCA
TIF1	YKR059W	Translation initiation factor eIF4A	physical	4	3	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-Western, Affinity Capture-RNA
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	physical	4	2	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
STM1	YLR150W	Protein required for optimal translation under nutrient stress	genetic	4	4	2	Dosage Lethality, Synthetic Lethality, Synthetic Rescue, Dosage Growth Defect
PBP1	YGR178C	Component of glucose deprivation induced stress granules	physical	3	3	3	Two-hybrid, PCA, Affinity Capture-MS
SCD6	YPR129W	Repressor of translation initiation	physical	3	3	3	PCA, Affinity Capture-MS, Affinity Capture-RNA
NAM7	YMR080C	ATP-dependent RNA helicase of the SFI superfamily	physical	3	3	3	PCA, Affinity Capture-MS, Affinity Capture-RNA
YGR054W	YGR054W	Eukaryotic initiation factor eIF2A	physical	3	3	3	PCA, Affinity Capture-MS, Affinity Capture-RNA
LSM12	YHR121W	Protein of unknown function that may function in RNA processing	physical	3	3	3	PCA, Affinity Capture-MS, Affinity Capture-RNA
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	3	3	3	Affinity Capture-RNA, Co-purification, Affinity Capture-MS
DED81	YHR019C	Cytosolic asparaginyl-tRNA synthetase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
ACT1	YFL039C	Actin, structural protein in cytoskeleton	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
CHC1	YGL206C	Clathrin heavy chain	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
POP2	YNR052C	Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation	genetic	3	2	3	Dosage Rescue, Synthetic Lethality, Dosage Rescue
PRP19	YLL036C	Splicing factor associated with the spliceosome	physical	3	2	3	Co-purification, Affinity Capture-RNA, Affinity Capture-RNA
PUB1	YNL016W	Poly (A)+ RNA-binding protein	physical	3	2	3	PCA, Affinity Capture-RNA, Affinity Capture-RNA
LSM3	YLR438C-A	Lsm (Like Sm) protein	physical	3	2	3	PCA, Affinity Capture-MS, Affinity Capture-MS
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	physical	3	2	3	PCA, Affinity Capture-RNA, Affinity Capture-RNA
WHI3	YNL197C	RNA binding protein that modulates mRNA stability	physical	3	2	3	Protein-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MYO2	YOR326W	Type V myosin motor involved in actin-based transport of cargos	physical	3	2	3	Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA
UBP3	YER151C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
RPO21	YDL140C	RNA polymerase II largest subunit B220	physical	3	2	3	Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
RPL16B	YNL069C	Ribosomal 60S subunit protein L16B	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
RPS19B	YNL302C	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
RPL26A	YLR344W	Ribosomal 60S subunit protein L26A	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
RPL26B	YGR034W	Ribosomal 60S subunit protein L26B	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
RPL35B	YDL136W	Ribosomal 60S subunit protein L35B	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
TEF2	YBR118W	Translational elongation factor EF-1 alpha	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-MS
HTB2	YBL002W	Histone H2B	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
PET9	YBL030C	Major ADP/ATP carrier of the mitochondrial inner membrane	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
OLA1	YBR025C	P-loop ATPase with similarity to human OLA1 and bacterial YchF	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS11B	YBR048W	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
VMA2	YBR127C	Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS6B	YBR181C	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
PGI1	YBR196C	Glycolytic enzyme phosphoglucose isomerase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
PGK1	YCR012W	3-phosphoglycerate kinase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
VMA1	YDL185W	Subunit A of the V1 peripheral membrane domain of V-ATPase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
MRH1	YDR033W	Protein that localizes primarily to the plasma membrane	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
KRS1	YDR037W	Lysyl-tRNA synthetase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
TPI1	YDR050C	Triose phosphate isomerase, abundant glycolytic enzyme	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
EFT2	YDR385W	Elongation factor 2 (EF-2), also encoded by EFT1	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPL12B	YDR418W	Ribosomal 60S subunit protein L12B	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
SAH1	YER043C	S-adenosyl-L-homocysteine hydrolase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
MET6	YER091C	Cobalamin-independent methionine synthase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS26B	YER131W	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
TUB2	YFL037W	Beta-tubulin	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
SEC53	YFL045C	Phosphomannomutase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
PMA1	YGL008C	Plasma membrane P2-type H+-ATPase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
LEU1	YGL009C	Isopropylmalate isomerase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPL7A	YGL076C	Ribosomal 60S subunit protein L7A	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
GCN1	YGL195W	Positive regulator of the Gcn2p kinase activity	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
GUS1	YGL245W	Glutamyl-tRNA synthetase (GluRS)	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS23A	YGR118W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
PFK1	YGR240C	Alpha subunit of heterooctameric phosphofructokinase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
YHR020W	YHR020W	Prolyl-tRNA synthetase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS4B	YHR203C	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
MMF1	YIL051C	Mitochondrial protein required for transamination of isoleucine	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
GPP1	YIL053W	Constitutively expressed DL-glycerol-3-phosphate phosphatase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
URA2	YJL130C	Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS21B	YJL136C	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
ILV3	YJR016C	Dihydroxyacid dehydratase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
SSC1	YJR045C	Hsp70 family ATPase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
TEF4	YKL081W	Gamma subunit of translational elongation factor eEF1B	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
GPM1	YKL152C	Tetrameric phosphoglycerate mutase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
FAS1	YKL182W	Beta subunit of fatty acid synthetase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
SSA2	YLL024C	HSP70 family ATP-binding protein	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPL15A	YLR029C	Ribosomal 60S subunit protein L15A	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPL10	YLR075W	Ribosomal 60S subunit protein L10	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
STM1	YLR150W	Protein required for optimal translation under nutrient stress	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS28B	YLR264W	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
GSP1	YLR293C	Ran GTPase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPP0	YLR340W	Conserved ribosomal protein P0 of the ribosomal stalk	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
ILV5	YLR355C	Acetohydroxyacid reductoisomerase and mtDNA binding protein	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
IMD4	YML056C	Inosine monophosphate dehydrogenase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPL13B	YMR142C	Ribosomal 60S subunit protein L13B	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPL20A	YMR242C	Ribosomal 60S subunit protein L20A	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS7B	YNL096C	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS7A	YOR096W	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
PDR5	YOR153W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RPL33A	YPL143W	Ribosomal 60S subunit protein L33A	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
FAS2	YPL231W	Alpha subunit of fatty acid synthetase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
HSP82	YPL240C	Hsp90 chaperone	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-MS
GLN1	YPR035W	Glutamine synthetase (GS)	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
TKL1	YPR074C	Transketolase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
SEC23	YPR181C	GTPase-activating protein, stimulates the GTPase activity of Sar1p	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
RVB1	YDR190C	ATP-dependent DNA helicase, also known as pontin	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
EDC1	YGL222C	RNA-binding protein that activates mRNA decapping directly	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
RPL30	YGL030W	Ribosomal 60S subunit protein L30	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
RPL34A	YER056C-A	Ribosomal 60S subunit protein L34A	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
RPS27B	YHR021C	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
FUN12	YAL035W	Translation initiation factor eIF5B	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
EBP2	YKL172W	Required for 25S rRNA maturation and 60S ribosomal subunit assembly	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
NAB6	YML117W	Putative RNA-binding protein	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
RPL6A	YML073C	Ribosomal 60S subunit protein L6A	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
RPL22B	YFL034C-A	Ribosomal 60S subunit protein L22A	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
PUF6	YDR496C	Pumilio-homology domain protein	physical	3	2	3	Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA
TFC6	YDR362C	Subunit of RNA polymerase III transcription initiation factor complex	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-MS
JSN1	YJR091C	Member of the Puf family of RNA-binding proteins	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-Western
BGL2	YGR282C	Endo-beta-1,3-glucanase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
ATP2	YJR121W	Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
ACO1	YLR304C	Aconitase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
CAF20	YOR276W	Phosphoprotein of the mRNA cap-binding complex	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-MS
AHP1	YLR109W	Thiol-specific peroxiredoxin	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
ASK10	YGR097W	Regulator of the Fps1p glycerol channel	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
CDC19	YAL038W	Pyruvate kinase	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA
CTH1	YDR151C	mRNA binding protein, member of the CCCH zinc finger family	physical	3	2	3	Two-hybrid, Affinity Capture-RNA, Affinity Capture-RNA
CTO1	YCR015C	Protein required for cold tolerance	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPC40	YPR110C	RNA polymerase subunit AC40	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PMP1	YCR024C-A	Regulatory subunit for the plasma membrane H(+)-ATPase Pma1p	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GPD1	YDL022W	NAD-dependent glycerol-3-phosphate dehydrogenase	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL11	YDL202W	Mitochondrial ribosomal protein of the large subunit	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NHP2	YDL208W	Protein related to mammalian high mobility group (HMG) proteins	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SED1	YDR077W	Major stress-induced structural GPI-cell wall glycoprotein	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
KIN1	YDR122W	S/T protein kinase	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HTB1	YDR224C	Histone H2B	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PEX3	YDR329C	Peroxisomal membrane protein (PMP)	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL12A	YEL054C	Ribosomal 60S subunit protein L12A	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SCW11	YGL028C	Cell wall protein with similarity to glucanases	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
DSE2	YHR143W	Daughter cell-specific secreted protein with similarity to glucanases	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRT4	YKL009W	Protein involved in mRNA turnover and ribosome assembly	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPS27A	YKL156W	Protein component of the small (40S) ribosomal subunit	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GSY2	YLR258W	Glycogen synthase	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
INA1	YLR413W	Protein of unknown function	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HXT2	YMR011W	High-affinity glucose transporter of the major facilitator superfamily	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TDA1	YMR291W	Protein kinase of unknown cellular role	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HHT2	YNL031C	Histone H3	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MFA2	YNL145W	Mating pheromone a-factor	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TOS6	YNL300W	Glycosylphosphatidylinositol-dependent cell wall protein	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NOG2	YNR053C	Putative GTPase	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ZEO1	YOL109W	Peripheral membrane protein of the plasma membrane	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MDH2	YOL126C	Cytoplasmic malate dehydrogenase	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HSP10	YOR020C	Mitochondrial matrix co-chaperonin	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
WHI2	YOR043W	Negative regulator of TORC1 in response to limiting leucine	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PPQ1	YPL179W	Protein phosphatase that regulates the mating response	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NAB3	YPL190C	RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p)	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIF6	YPR016C	Constituent of 66S pre-ribosomal particles	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MEP3	YPR138C	Ammonium permease of high capacity and low affinity	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PUF2	YPR042C	PUF family mRNA-binding protein	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
BAP2	YBR068C	High-affinity leucine permease	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CDC33	YOL139C	Translation initiation factor eIF4E	physical	3	3	2	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-RNA
CAF20	YOR276W	Phosphoprotein of the mRNA cap-binding complex	genetic	3	3	2	Synthetic Rescue, Dosage Lethality, Phenotypic Suppression
SCD6	YPR129W	Repressor of translation initiation	genetic	3	2	2	Synthetic Growth Defect, Phenotypic Enhancement, Phenotypic Enhancement
CDC39	YCR093W	Subunit of the CCR4-NOT1 core complex	genetic	3	3	1	Dosage Lethality, Synthetic Lethality, Synthetic Rescue
ELM1	YKL048C	Serine/threonine protein kinase	genetic	3	3	1	Synthetic Lethality, Synthetic Growth Defect, Phenotypic Enhancement
DBP9	YLR276C	DEAD-box protein required for 27S rRNA processing	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ADH1	YOL086C	Alcohol dehydrogenase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
BMH1	YER177W	14-3-3 protein, major isoform	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
DBP3	YGL078C	RNA-Dependent ATPase, member of DExD/H-box family	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
DED1	YOR204W	ATP-dependent DEAD-box RNA helicase with strand-annealing activity	genetic	2	2	2	Synthetic Lethality, Synthetic Growth Defect
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ALA1	YOR335C	Cytoplasmic and mitochondrial alanyl-tRNA synthetase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ACC1	YNR016C	Acetyl-CoA carboxylase, biotin containing enzyme	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
BAT1	YHR208W	Mitochondrial branched-chain amino acid (BCAA) aminotransferase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
COP1	YDL145C	Alpha subunit of COPI vesicle coatomer complex	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
CYS4	YGR155W	Cystathionine beta-synthase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
HIS4	YCL030C	Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SEC27	YGL137W	Essential beta'-coat protein of the COPI coatomer	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
YKU80	YMR106C	Subunit of telomeric Ku complex (Yku70p-Yku80p)	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PUP2	YGR253C	Alpha 5 subunit of the 20S proteasome	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PBP1	YGR178C	Component of glucose deprivation induced stress granules	genetic	2	2	2	Dosage Growth Defect, Synthetic Growth Defect
PUF4	YGL014W	Member of the PUF protein family	physical	2	2	2	PCA, Affinity Capture-RNA
EDC2	YER035W	RNA-binding protein that directly activates mRNA decapping	physical	2	2	2	PCA, Affinity Capture-RNA
RPN1	YHR027C	Non-ATPase base subunit of the 19S RP of the 26S proteasome	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SUS1	YBR111W-A	Global transcriptional regulator, component of SAGA, TREX-2 complexes	physical	2	2	2	Affinity Capture-Western, Affinity Capture-RNA
RPS19A	YOL121C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL35A	YDL191W	Ribosomal 60S subunit protein L35A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ORM2	YLR350W	Protein that mediates sphingolipid homeostasis	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PSA1	YDL055C	GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
HMO1	YDR174W	Chromatin associated high mobility group (HMG) family member	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
ENO2	YHR174W	Enolase II, a phosphopyruvate hydratase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
FBA1	YKL060C	Fructose 1,6-bisphosphate aldolase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
PDC1	YLR044C	Major of three pyruvate decarboxylase isozymes	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
YEF3	YLR249W	Translation elongation factor 3	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
YDJ1	YNL064C	Type I HSP40 co-chaperone	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
ERG10	YPL028W	Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase)	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPL5	YPL131W	Ribosomal 60S subunit protein L5	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RTR1	YER139C	Dual specificity protein phosphatase	physical	2	2	2	Affinity Capture-Western, Affinity Capture-RNA
REX3	YLR107W	RNA exonuclease	physical	2	2	2	Affinity Capture-Western, Affinity Capture-RNA
DPS1	YLL018C	Aspartyl-tRNA synthetase, primarily cytoplasmic	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
GDH1	YOR375C	NADP(+)-dependent glutamate dehydrogenase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
HTA2	YBL003C	Histone H2A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ILV2	YMR108W	Acetolactate synthase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
IMD3	YLR432W	Inosine monophosphate dehydrogenase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
IPP1	YBR011C	Cytoplasmic inorganic pyrophosphatase (PPase)	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
LSM5	YER146W	Lsm (Like Sm) protein	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
MES1	YGR264C	Methionyl-tRNA synthetase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PAB1	YER165W	Poly(A) binding protein	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PBP4	YDL053C	Pbp1p binding protein	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PDB1	YBR221C	E1 beta subunit of the pyruvate dehydrogenase (PDH) complex	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PFK2	YMR205C	Beta subunit of heterooctameric phosphofructokinase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PIL1	YGR086C	Eisosome core component	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RNQ1	YCL028W	[PIN(+)] prion	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL11B	YGR085C	Ribosomal 60S subunit protein L11B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL14A	YKL006W	Ribosomal 60S subunit protein L14A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL17A	YKL180W	Ribosomal 60S subunit protein L17A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL18B	YNL301C	Ribosomal 60S subunit protein L18B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL19B	YBL027W	Ribosomal 60S subunit protein L19B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL1B	YGL135W	Ribosomal 60S subunit protein L1B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL22A	YLR061W	Ribosomal 60S subunit protein L22A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL23A	YBL087C	Ribosomal 60S subunit protein L23A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL24A	YGL031C	Ribosomal 60S subunit protein L24A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL25	YOL127W	Ribosomal 60S subunit protein L25	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL27B	YDR471W	Ribosomal 60S subunit protein L27B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL28	YGL103W	Ribosomal 60S subunit protein L28	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL31A	YDL075W	Ribosomal 60S subunit protein L31A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL38	YLR325C	Ribosomal 60S subunit protein L38	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL43B	YJR094W-A	Ribosomal 60S subunit protein L43B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL4A	YBR031W	Ribosomal 60S subunit protein L4A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS14A	YCR031C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS16B	YDL083C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS17B	YDR447C	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS1B	YML063W	Ribosomal protein of the small (40S) subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS2	YGL123W	Protein component of the small (40S) subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS22A	YJL190C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS25A	YGR027C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS31	YLR167W	Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS5	YJR123W	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS8A	YBL072C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SEC31	YDL195W	Component of the Sec13p-Sec31p complex of the COPII vesicle coat	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SES1	YDR023W	Cytosolic seryl-tRNA synthetase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SHM2	YLR058C	Cytosolic serine hydroxymethyltransferase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SIS1	YNL007C	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SPT5	YML010W	Spt4p/5p (DSIF) transcription elongation factor complex subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
THS1	YIL078W	Threonyl-tRNA synthetase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
YHB1	YGR234W	Nitric oxide oxidoreductase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
NUG1	YER006W	GTPase that associates with nuclear 60S pre-ribosomes	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
MIS1	YBR084W	Mitochondrial C1-tetrahydrofolate synthase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
FPR3	YML074C	Nucleolar peptidyl-prolyl cis-trans isomerase (PPIase)	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
FPR4	YLR449W	Peptidyl-prolyl cis-trans isomerase (PPIase)	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
GCD11	YER025W	Gamma subunit of the translation initiation factor eIF2	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
GRS1	YBR121C	Cytoplasmic and mitochondrial glycyl-tRNA synthase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
HHO1	YPL127C	Histone H1, linker histone with roles in meiosis and sporulation	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ILS1	YBL076C	Cytoplasmic isoleucine-tRNA synthetase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
LYS21	YDL131W	Homocitrate synthase isozyme	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
MAP1	YLR244C	Methionine aminopeptidase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
MKT1	YNL085W	Protein similar to nucleases that forms a complex with Pbp1p	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PUF3	YLL013C	Protein of the mitochondrial outer surface	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPG1	YBR079C	eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL13A	YDL082W	Ribosomal 60S subunit protein L13A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL36B	YPL249C-A	Ribosomal 60S subunit protein L36B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPM2	YML091C	Protein subunit of mitochondrial RNase P	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPP2A	YOL039W	Ribosomal protein P2 alpha	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPS9B	YBR189W	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPT3	YDR394W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SAM1	YLR180W	S-adenosylmethionine synthetase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SAM2	YDR502C	S-adenosylmethionine synthetase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SCL1	YGL011C	Alpha 1 subunit of the 20S proteasome	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SPF1	YEL031W	P-type ATPase, ion transporter of the ER membrane	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SSZ1	YHR064C	Hsp70 protein that interacts with Zuo1p (a DnaJ homolog)	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SUI3	YPL237W	Beta subunit of the translation initiation factor eIF2	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
THR1	YHR025W	Homoserine kinase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
TSA1	YML028W	Thioredoxin peroxidase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
UBA1	YKL210W	Ubiquitin activating enzyme (E1)	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
VMA5	YKL080W	Subunit C of the V1 peripheral membrane domain of V-ATPase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
VTC2	YFL004W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
VTC3	YPL019C	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
WTM1	YOR230W	Transcriptional modulator	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
GIN4	YDR507C	Protein kinase involved in bud growth and assembly of the septin ring	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
LSG1	YGL099W	Putative GTPase involved in 60S ribosomal subunit biogenesis	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL17B	YJL177W	Ribosomal 60S subunit protein L17B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RPL36A	YMR194W	Ribosomal 60S subunit protein L36A	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SEC16	YPL085W	COPII vesicle coat protein required for ER transport vesicle budding	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
SUP35	YDR172W	Translation termination factor eRF3	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
KAP123	YER110C	Karyopherin beta	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
MSS116	YDR194C	Mitochondrial transcription elongation factor	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PET130	YJL023C	Protein of unknown function	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
TMA108	YIL137C	Ribosome-associated, nascent chain binding factor	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
TMA46	YOR091W	Protein of unknown function that associates with translating ribosomes	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
STE12	YHR084W	Transcription factor that is activated by a MAPK signaling cascade	genetic	2	2	2	Dosage Rescue, Phenotypic Suppression
TEM1	YML064C	GTPase involved in initiation of Mitotic Exit Network (MEN)	physical	2	2	2	Affinity Capture-RNA, Proximity Label-MS
PKC1	YBL105C	Protein serine/threonine kinase	genetic	2	2	2	Dosage Rescue, Phenotypic Suppression
LOC1	YFR001W	Nucleolar protein involved in the asymmetric localization of ASH1 mRNA	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-Western
MCA1	YOR197W	Ca2+-dependent cysteine protease	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RET1	YOR207C	Second-largest subunit of RNA polymerase III	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
CLU1	YMR012W	Subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ARB1	YER036C	ATPase of the ATP-binding cassette (ABC) family	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
CRM1	YGR218W	Nuclear export factor, exportin	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ADE57	YGL234W	Bifunctional enzyme of 'de novo' purine nucleotide pathway	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ADE3	YGR204W	Cytoplasmic trifunctional enzyme	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
CCT8	YJL008C	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
CAM1	YPL048W	One of two isoforms of the gamma subunit of eEF1B	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ACS2	YLR153C	Acetyl-coA synthetase isoform	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
CCT3	YJL014W	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
CYS3	YAL012W	Cystathionine gamma-lyase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
CDC7	YDL017W	S/T kinase and catalytic subunit of DDK (Dbf4-dependent kinase)	physical	2	2	2	Two-hybrid, Affinity Capture-RNA
ADE2	YOR128C	Phosphoribosylaminoimidazole carboxylase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
BRE5	YNR051C	Ubiquitin protease cofactor	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ATP1	YBL099W	Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ARO8	YGL202W	Aromatic aminotransferase I	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
ALD6	YPL061W	Cytosolic aldehyde dehydrogenase	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
CHD1	YER164W	Chromatin remodeler that regulates various aspects of transcription	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CTR9	YOL145C	Component of the Paf1p complex involved in transcription elongation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CEF1	YMR213W	Essential splicing factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BFR2	YDR299W	Component of the SSU and 90S preribosomes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AMN1	YBR158W	Modulator of cell separation and mitotic exit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BRR2	YER172C	RNA-dependent ATPase RNA helicase (DEIH box)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BRE1	YDL074C	E3 ubiquitin ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DBP7	YKR024C	Putative ATP-dependent RNA helicase of the DEAD-box family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CSL4	YNL232W	Exosome non-catalytic core component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARP7	YPR034W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ADE4	YMR300C	Phosphoribosylpyrophosphate amidotransferase (PRPPAT)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
APC1	YNL172W	Largest subunit of the Anaphase-Promoting Complex/Cyclosome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
APL3	YBL037W	Alpha-adaptin	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARC15	YIL062C	Subunit of the ARP2/3 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BMH2	YDR099W	14-3-3 protein, minor isoform	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUD14	YAR014C	Protein involved in bud-site selection	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUD20	YLR074C	C2H2-type zinc finger protein required for ribosome assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDC24	YAL041W	Guanine nucleotide exchange factor (GEF) for Cdc42p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DBP10	YDL031W	Putative ATP-dependent RNA helicase of the DEAD-box protein family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CIP1	YPL014W	Cyclin-dependent kinase inhibitor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CTF18	YMR078C	Subunit of a complex with Ctf8p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CTK1	YKL139W	Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BDF2	YDL070W	Protein involved in transcription initiation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MPT5	YGL178W	mRNA-binding protein of the PUF family	genetic	2	1	2	Synthetic Growth Defect, Synthetic Growth Defect
HEK2	YBL032W	RNA binding protein involved in asymmetric localization of ASH1 mRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IGO1	YNL157W	Protein required for initiation of G0 program	genetic	2	1	2	Phenotypic Suppression, Phenotypic Suppression
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NCL1	YBL024W	S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HHT1	YBR010W	Histone H3	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TAT1	YBR069C	Amino acid transporter for valine, leucine, isoleucine, and tyrosine	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ECM33	YBR078W	GPI-anchored protein involved in efficient glucose uptake	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL19A	YBR084C-A	Ribosomal 60S subunit protein L19A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IST2	YBR086C	Cortical ER protein involved in ER-plasma membrane (PM) tethering	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOS1	YBR162C	Covalently-bound cell wall protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GLK1	YCL040W	Glucokinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YCL042W	YCL042W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP1	YDL014W	Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS29B	YDL061C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SUB2	YDL084W	Component of the TREX complex required for nuclear mRNA export	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LYS20	YDL182W	Homocitrate synthase isozyme and functions in DNA repair	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SNQ2	YDR011W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL4B	YDR012W	Ribosomal 60S subunit protein L4B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS11A	YDR025W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
REG1	YDR028C	Regulatory subunit of type 1 protein phosphatase Glc7p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TPS2	YDR074W	Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RTN1	YDR233C	Reticulon protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EAF1	YDR359C	Component of the NuA4 histone acetyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ESF1	YDR365C	Nucleolar protein involved in pre-rRNA processing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP5	YDR398W	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NPL3	YDR432W	RNA-binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDR524C-B	YDR524C-B	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GCN4	YEL009C	bZIP transcriptional activator of amino acid biosynthetic genes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SNU13	YEL026W	RNA binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HYP2	YEL034W	Translation elongation factor eIF-5A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GLY1	YEL046C	Threonine aldolase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRB1	YEL060C	Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RNR1	YER070W	Major isoform of large subunit of ribonucleotide-diphosphate reductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PUP3	YER094C	Beta 3 subunit of the 20S proteasome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GLO3	YER122C	ADP-ribosylation factor GTPase activating protein (ARF GAP)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GSY1	YFR015C	Glycogen synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HXK1	YFR053C	Hexokinase isoenzyme 1	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PNC1	YGL037C	Nicotinamidase that converts nicotinamide to nicotinic acid	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
OLE1	YGL055W	Delta(9) fatty acid desaturase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HXK2	YGL253W	Hexokinase isoenzyme 2	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGR079W	YGR079W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SKN1	YGR143W	Protein involved in sphingolipid biosynthesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ERG1	YGR175C	Squalene epoxidase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TYS1	YGR185C	Cytoplasmic tyrosyl-tRNA synthetase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MPC3	YGR243W	Highly conserved subunit of the mitochondrial pyruvate carrier (MPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAD2	YGR258C	Single-stranded DNA endonuclease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SCW4	YGR279C	Cell wall protein with similarity to glucanases	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ERG11	YHR007C	Lanosterol 14-alpha-demethylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRP8	YHR165C	Component of U4/U6-U5 snRNP complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
OYE2	YHR179W	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ERG9	YHR190W	Farnesyl-diphosphate farnesyl transferase (squalene synthase)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL2B	YIL018W	Ribosomal 60S subunit protein L2B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPN2	YIL075C	Subunit of the 26S proteasome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YAP5	YIR018W	Basic leucine zipper (bZIP) iron-sensing transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KAR2	YJL034W	ATPase involved in protein import into the ER	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TDH1	YJL052W	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SCP160	YJL080C	Essential RNA-binding G protein effector of mating response pathway	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HSP150	YJL159W	O-mannosylated heat shock protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TMA19	YKL056C	Protein that associates with ribosomes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YKL068W-A	YKL068W-A	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PIR1	YKL164C	O-glycosylated protein required for cell wall stability	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HYM1	YKL189W	Component of the RAM signaling network	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTH1	YKR042W	Mitochondrial inner membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YKR075C	YKR075C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRP40	YKR092C	Nucleolar serine-rich protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UBI4	YLL039C	Ubiquitin	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SDO1	YLR022C	Guanine nucleotide exchange factor (GEF) for Ria1p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS0B	YLR048W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PDC5	YLR134W	Minor isoform of pyruvate decarboxylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL37A	YLR185W	Ribosomal 60S subunit protein L37A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YLR297W	YLR297W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EXG1	YLR300W	Major exo-1,3-beta-glucanase of the cell wall	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FKS1	YLR342W	Catalytic subunit of 1,3-beta-D-glucan synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS22B	YLR367W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TCB3	YML072C	Cortical ER protein involved in ER-plasma membrane tethering	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TSL1	YML100W	Large subunit of trehalose 6-phosphate synthase/phosphatase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL15B	YMR121C	Ribosomal 60S subunit protein L15B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NCW1	YMR122W-A	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPT21	YMR179W	Protein with a role in transcriptional silencing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOM40	YMR203W	Component of the TOM (translocase of outer membrane) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRE11	YMR224C	Nuclease subunit of the MRX complex with Rad50p and Xrs2p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FAA4	YMR246W	Long chain fatty acyl-CoA synthetase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GAS1	YMR307W	Beta-1,3-glucanosyltransferase required for cell wall assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LAP2	YNL045W	Leucyl aminopeptidase yscIV with epoxide hydrolase activity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
OCA1	YNL099C	Putative protein tyrosine phosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOM70	YNL121C	Component of the TOM (translocase of outer membrane) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGP1	YNL160W	Cell wall-related secretory glycoprotein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SQS1	YNL224C	Protein that stimulates the ATPase and helicase activities of Prp43p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EGT2	YNL327W	Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STI1	YOR027W	Evolutionarily-conserved Hsp90 cochaperone	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VPS21	YOR089C	Endosomal Rab family GTPase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PTC5	YOR090C	Mitochondrial type 2C protein phosphatase (PP2C)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EFT1	YOR133W	Elongation factor 2 (EF-2), also encoded by EFT2	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SEY1	YOR165W	Dynamin-like GTPase that mediates homotypic ER fusion	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAS5	YOR213C	Subunit of the SAS complex (Sas2p, Sas4p, Sas5p)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPB8	YOR224C	RNA polymerase subunit ABC14.5	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL20B	YOR312C	Ribosomal 60S subunit protein L20B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRO2	YOR323C	Gamma-glutamyl phosphate reductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VMA4	YOR332W	Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPA190	YOR341W	RNA polymerase I largest subunit A190	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LSP1	YPL004C	Eisosome core component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GIP3	YPL137C	Cytoplasmic protein that regulates protein phosphatase 1 Glc7p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL7B	YPL198W	Ribosomal 60S subunit protein L7B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TYW1	YPL207W	Iron-sulfur protein required for synthesis of wybutosine modified tRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NEW1	YPL226W	Translation termination and ribosome biogenesis factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DIP5	YPL265W	Dicarboxylic amino acid permease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPA135	YPR010C	RNA polymerase I second largest subunit A135	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIF5	YPR041W	Translation initiation factor eIF5	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NCE102	YPR149W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL37B	YDR500C	Ribosomal 60S subunit protein L37B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL39	YJL189W	Ribosomal 60S subunit protein L39	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS18B	YML026C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PAA1	YDR071C	Polyamine acetyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RMD8	YFR048W	Cytosolic protein required for sporulation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YMR310C	YMR310C	Putative methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PER33	YLR064W	Protein that localizes to the endoplasmic reticulum	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MAD2	YJL030W	Component of the spindle-assembly checkpoint complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LCD1	YDR499W	Essential protein required for the DNA integrity checkpoint pathways	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IKI1	YHR187W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPN10	YHR200W	Proteasome polyubiquitin receptor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HAL5	YJL165C	Snf1p-related nutrient-responsive protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NDC1	YML031W	Subunit of the transmembrane ring of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRD1	YIL153W	Peptidyl-prolyl cis/trans-isomerase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIM18	YOR297C	Component of the mitochondrial TIM22 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SIT1	YEL065W	Ferrioxamine B transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MAK11	YKL021C	Protein involved in an early step of 60S ribosomal subunit biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VPS17	YOR132W	Subunit of the membrane-associated retromer complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DIP2	YLR129W	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PBI2	YNL015W	Cytosolic inhibitor of vacuolar proteinase B (PRB1)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRP68	YPL243W	Core component of the signal recognition particle (SRP) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HAC1	YFL031W	Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS25B	YLR333C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRZ1	YKR079C	tRNA 3'-end processing endonuclease tRNase Z	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SFT2	YBL102W	Tetra-spanning membrane protein found mostly in the late Golgi	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PLB3	YOL011W	Phospholipase B (lysophospholipase) involved in lipid metabolism	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
THI80	YOR143C	Thiamine pyrophosphokinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MIC27	YNL100W	Component of the MICOS complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RFT1	YBL020W	Membrane protein required for translocation of Man5GlcNac2-PP-Dol	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SBH2	YER019C-A	Ssh1p-Sss1p-Sbh2p complex component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SEC3	YER008C	Subunit of the exocyst complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAP190	YKR028W	Protein that forms a complex with the Sit4p protein phosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAX2	YLR084C	Protein required for the maintenance of bud site selection	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRP21	YKL122C	Subunit of the signal recognition particle (SRP)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YAP1802	YGR241C	Protein of the AP180 family, involved in clathrin cage assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUD1	YOR373W	Mitotic exit network (MEN) scaffold protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
REA1	YLR106C	Huge dynein-related AAA-type ATPase (midasin)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IRC8	YJL051W	Bud tip localized protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VPS68	YOL129W	Vacuolar membrane protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SMD1	YGR074W	Core Sm protein Sm D1	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YIF1	YNL263C	Integral membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDR061W	YDR061W	Protein with similarity to ABC transporter family members	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PUP1	YOR157C	Beta 2 subunit of the 20S proteasome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRD1	YPR112C	Essential conserved small ribosomal subunit (40s) synthesis factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PDE2	YOR360C	High-affinity cyclic AMP phosphodiesterase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NRD1	YNL251C	RNA-binding subunit of Nrd1 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RER1	YCL001W	Protein involved in retention of membrane proteins	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GSH2	YOL049W	Glutathione synthetase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FCP1	YMR277W	Carboxy-terminal domain (CTD) phosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP25	YIL091C	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DUN1	YDL101C	Cell-cycle checkpoint S/T protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
THP3	YPR045C	Protein that may have a role in transcription elongation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IVY1	YDR229W	Phospholipid-binding protein that interacts with both Ypt7p and Vps33p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DPB2	YPR175W	Second largest subunit of DNA polymerase II (DNA polymerase epsilon)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIF35	YDR429C	eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAT1	YOR048C	Nuclear 5' to 3' single-stranded RNA exonuclease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SKI7	YOR076C	GTP-binding protein that couples the Ski complex and exosome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SSS1	YDR086C	Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UBP8	YMR223W	Ubiquitin-specific protease component of the SAGA acetylation complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VPS53	YJL029C	Component of the GARP (Golgi-associated retrograde protein) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MIM1	YOL026C	Mitochondrial protein required for outer membrane protein import	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FRE1	YLR214W	Ferric reductase and cupric reductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EMI1	YDR512C	Non-essential protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SEC10	YLR166C	Essential 100kDa subunit of the exocyst complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MEX67	YPL169C	Poly(A)RNA binding protein involved in nuclear mRNA export	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP7	YER082C	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YPT31	YER031C	Rab family GTPase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PPN2	YNL217W	Zn2+-dependent endopolyphosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SUR7	YML052W	Plasma membrane protein, component of eisosomes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP12	YOL041C	Nucleolar protein involved in pre-25S rRNA processing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPN7	YPR108W	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PPH3	YDR075W	Catalytic subunit of protein phosphatase PP4 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TGL4	YKR089C	Multifunctional lipase/hydrolase/phospholipase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SVL3	YPL032C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HFD1	YMR110C	Dehydrogenase involved in ubiquinone and sphingolipid metabolism	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RLI1	YDR091C	Essential Fe-S protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TMH11	YJR085C	Mitochondrial protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SDA1	YGR245C	Protein required for actin organization and passage through Start	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YNL208W	YNL208W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRO1	YDR300C	Gamma-glutamyl kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DSL1	YNL258C	Peripheral membrane protein needed for Golgi-to-ER retrograde traffic	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KHA1	YJL094C	Putative K+/H+ antiporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PEX12	YMR026C	C3HC4-type RING-finger peroxin and E3 ubiquitin ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SND1	YDR186C	Protein involved in SRP-independent targeting of substrates to the ER	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IRC7	YFR055W	Cysteine desulphydrase, enables growth on cysteine as nitrogen source	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRM5	YHR070W	tRNA(m(1)G37)methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWD2	YKL018W	Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TGL1	YKL140W	Steryl ester hydrolase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
JEM1	YJL073W	DnaJ-like chaperone required for nuclear membrane fusion during mating	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LCP5	YER127W	Essential protein involved in maturation of 18S rRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TDA5	YLR426W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRB1	YMR131C	Specific assembly chaperone for ribosomal protein Rpl3p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FMP52	YER004W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ENT4	YLL038C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIP41	YPR040W	Tap42p-interacting protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YMC2	YBR104W	Putative mitochondrial inner membrane transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPL40	YPL173W	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
URM1	YIL008W	Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRK1	YJL129C	Component of the Trk1p-Trk2p potassium transport system	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SEF1	YBL066C	Putative transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DSE1	YER124C	Daughter cell-specific protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TSC11	YER093C	Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LEO1	YOR123C	Component of the Paf1 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SLH1	YGR271W	Subunit of ribosome-associated quality control trigger complex (RQT)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RIM101	YHL027W	Cys2His2 zinc-finger transcriptional repressor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EMC10	YDR056C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PEP8	YJL053W	Vacuolar protein component of the retromer	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOA2	YKL058W	TFIIA small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ESF2	YNR054C	Essential nucleolar protein involved in pre-18S rRNA processing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PTK2	YJR059W	Serine/threonine protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRP22	YER013W	DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPP1	YHR062C	Subunit of both RNase MRP and nuclear RNase P	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HKR1	YDR420W	Mucin family member that functions as an osmosensor in the HOG pathway	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MSA2	YKR077W	Putative transcriptional activator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRL1	YOR247W	Mannoprotein that exhibits a tight association with the cell wall	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRM8	YDL201W	Catalytic subunit of a tRNA methyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MET18	YIL128W	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
POP1	YNL221C	Subunit of RNase MRP, nuclear RNase P and telomerase complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSC30	YHR056C	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YBR016W	YBR016W	Tail-anchored plasma membrane protein with a conserved CYSTM module	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRF5	YNL299W	Non-canonical poly(A) polymerase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DRN1	YGR093W	Splicing factor that modulates turnover of branched RNAs by Dbr1p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIF4632	YGL049C	Translation initiation factor eIF4G and scaffold protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP1	YDR087C	Essential evolutionarily conserved nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SMC4	YLR086W	Subunit of the condensin complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUP84	YDL116W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PCL8	YPL219W	Cyclin	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RKM4	YDR257C	Ribosomal lysine methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ESL2	YKR096W	hEST1A/B (SMG5/6)-like protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MGL2	YMR210W	Monoacylglycerol and triacylglycerol lipase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRB7	YDR308C	Subunit of the RNA polymerase II mediator complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YML018C	YML018C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FCY1	YPR062W	Cytosine deaminase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MSC6	YOR354C	Multicopy suppressor of HER2 involved in mitochondrial translation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP13	YLR222C	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PPS1	YBR276C	Protein phosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FOB1	YDR110W	Nucleolar protein that binds the rDNA replication fork barrier site	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPC34	YNR003C	RNA polymerase III subunit C34	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSC3	YDR303C	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DSC3	YOR223W	Subunit of the DSC ubiquitin ligase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FPR1	YNL135C	Peptidyl-prolyl cis-trans isomerase (PPIase)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GRX5	YPL059W	Glutathione-dependent oxidoreductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PAF1	YBR279W	Component of the Paf1p complex involved in transcription elongation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUP49	YGL172W	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PIH1	YHR034C	Component of the conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HCS1	YKL017C	Hexameric DNA polymerase alpha-associated DNA helicase A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DIA1	YMR316W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SMP3	YOR149C	Alpha 1,2-mannosyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TAF5	YBR198C	Subunit (90 kDa) of TFIID and SAGA complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YPL225W	YPL225W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STP1	YDR463W	Transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
END3	YNL084C	EH domain-containing protein involved in endocytosis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STE2	YFL026W	Receptor for alpha-factor pheromone	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
URB1	YKL014C	Protein required for the normal accumulation of 25S and 5.8S rRNAs	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPL4	YLR439W	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SCJ1	YMR214W	One of several homologs of bacterial chaperone DnaJ	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RIO1	YOR119C	Serine kinase involved in cell cycle regulation and rDNA integrity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FZO1	YBR179C	Mitofusin, protein involved in mitochondrial outer membrane fusion	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TCM62	YBR044C	Protein involved in assembly of the succinate dehydrogenase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HER1	YOR227W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP21	YLR409C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SUI2	YJR007W	Alpha subunit of the translation initiation factor eIF2	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GDE1	YPL110C	Glycerophosphocholine (GroPCho) phosphodiesterase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ECM16	YMR128W	Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RGT1	YKL038W	Glucose-responsive transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SYS1	YJL004C	Integral membrane protein of the Golgi	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TFG2	YGR005C	TFIIF (Transcription Factor II) middle subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SST2	YLR452C	GTPase-activating protein for Gpa1p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TPK3	YKL166C	cAMP-dependent protein kinase catalytic subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIF11	YMR260C	Translation initiation factor eIF1A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAT4	YCR008W	Ser/Thr protein kinase involved in salt tolerance, nutrient response	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MUP1	YGR055W	High affinity methionine permease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MTM1	YGR257C	Mitochondrial protein of the mitochondrial carrier family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TMA17	YDL110C	Regulatory gamma subunit of fatty acid synthase (FAS)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MSS4	YDR208W	Phosphatidylinositol-4-phosphate 5-kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOS7	YOL019W	Protein involved in secretion and cell wall organization	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SLD3	YGL113W	Protein involved in the initiation of DNA replication	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DUS1	YML080W	Dihydrouridine synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MCT1	YOR221C	Predicted malonyl-CoA:ACP transferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
THO1	YER063W	Conserved nuclear RNA-binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STU2	YLR045C	Microtubule polymerase of the XMAP215/Dis1 family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TAT2	YOL020W	High affinity tryptophan and tyrosine permease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAD51	YER095W	Strand exchange protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SUV3	YPL029W	ATP-dependent RNA helicase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VNX1	YNL321W	Calcium/H+ antiporter localized to the endoplasmic reticulum membrane	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FRA1	YLL029W	Protein involved in negative regulation of iron regulon transcription	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KCS1	YDR017C	Inositol hexakisphosphate and inositol heptakisphosphate kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRS120	YDR407C	Component of transport protein particle (TRAPP) complex II	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUP188	YML103C	Subunit of the inner ring of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PCL5	YHR071W	Cyclin	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWP82	YFL049W	Member of the SWI/SNF chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
REI1	YBR267W	Cytoplasmic pre-60S factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPC1	YJR010C-A	Subunit of the signal peptidase complex (SPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SGO1	YOR073W	Component of the spindle checkpoint	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRB4	YER022W	Subunit of the RNA polymerase II mediator complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MET4	YNL103W	Leucine-zipper transcriptional activator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PHO81	YGR233C	Cyclin-dependent kinase (CDK) inhibitor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GEP3	YOR205C	Protein required for mitochondrial ribosome small subunit biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PDS5	YMR076C	Cohesion maintenance factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LOA1	YPR139C	Lysophosphatidic acid acyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPA14	YDR156W	RNA polymerase I subunit A14	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HCA4	YJL033W	DEAD box RNA helicase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MET30	YIL046W	F-box protein containing five copies of the WD40 motif	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GCN5	YGR252W	Catalytic subunit of ADA and SAGA histone acetyltransferase complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HEL1	YKR017C	RING finger ubiquitin ligase (E3)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SVP26	YHR181W	ER exit adaptor for Golgi mannosyltransferases	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YOL036W	YOL036W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
INM1	YHR046C	Inositol monophosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HEM12	YDR047W	Uroporphyrinogen decarboxylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRP17	YKL003C	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SDS23	YGL056C	Protein involved in cell separation during budding	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STE6	YKL209C	Plasma membrane ATP-binding cassette (ABC) transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SLM1	YIL105C	Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GOS1	YHL031C	v-SNARE protein involved in Golgi transport	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
THP2	YHR167W	Subunit of the THO and TREX complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LAM6	YLR072W	Sterol transporter that transfers sterols between membranes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SDH8	YBR269C	Protein required for assembly of succinate dehydrogenase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TPO1	YLL028W	Polyamine transporter of the major facilitator superfamily	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EMG1	YLR186W	Methyltransferase for rRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ECM30	YLR436C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MIT1	YEL007W	Transcriptional regulator of pseudohyphal growth	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
URB2	YJR041C	Protein required for normal metabolism of the rRNA primary transcript	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAD9	YDR217C	DNA damage-dependent checkpoint protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VPS33	YLR396C	ATP-binding protein that is a subunit of the HOPS and CORVET complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MCR1	YKL150W	Mitochondrial NADH-cytochrome b5 reductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TAP42	YMR028W	Essential protein involved in the TOR signaling pathway	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPC110	YDR356W	Inner plaque spindle pole body (SPB) component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PFS2	YNL317W	Integral subunit of the pre-mRNA CPF complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MIC19	YFR011C	Component of the MICOS complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPF1	YHR088W	Protein involved in assembly and export of the large ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KRE9	YJL174W	Glycoprotein involved in cell wall beta-glucan assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PGS1	YCL004W	Phosphatidylglycerolphosphate synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PEX15	YOL044W	Tail-anchored type II integral peroxisomal membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP14	YDL148C	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YAR028W	YAR028W	Putative integral membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUP133	YKR082W	Subunit of Nup84p subcomplex of nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SNF11	YDR073W	Subunit of the SWI/SNF chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MON2	YNL297C	Protein with a role in endocytosis and vacuole integrity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LDB19	YOR322C	Alpha-arrestin, Ub-ligase adaptor for Rsp5p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAN1	YDR143C	Ubiquitin-protein ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IRC3	YDR332W	Double-stranded DNA-dependent helicase of the DExH/D-box family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPS35	YGR165W	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STH1	YIL126W	ATPase component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDL180W	YDL180W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRM112	YNR046W	Protein involved in methylation of tRNA, rRNA, and translation factors	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GAL80	YML051W	Transcriptional regulator involved in the repression of GAL genes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GTR2	YGR163W	Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MGR3	YMR115W	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SVS1	YPL163C	Cell wall and vacuolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PUS1	YPL212C	tRNA:pseudouridine synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPL20	YKR085C	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ROM2	YLR371W	Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NBP35	YGL091C	Essential cytoplasmic iron-sulfur cluster binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PAC10	YGR078C	Part of the heteromeric co-chaperone GimC/prefoldin complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DRE2	YKR071C	Component of the cytosolic Fe-S protein assembly (CIA) machinery	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TUL1	YKL034W	Subunit of the DSC ubiquitin ligase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FAF1	YIL019W	Protein required for pre-rRNA processing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PET127	YOR017W	Protein with a role in 5'-end processing of mitochondrial RNAs	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MGA2	YIR033W	ER membrane protein involved in regulation of OLE1 transcription	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SNF6	YHL025W	Subunit of the SWI/SNF chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TCD1	YHR003C	tRNA threonylcarbamoyladenosine dehydratase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RQC2	YPL009C	Component of the Ribosome Quality Control (RQC) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SCO1	YBR037C	Copper-binding protein of mitochondrial inner membrane	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TFA1	YKL028W	TFIIE large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSC4	YKR008W	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SML1	YML058W	Ribonucleotide reductase inhibitor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YTA7	YGR270W	Chromatin-binding ATPase that regulates histone gene expression	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IPT1	YDR072C	Inositolphosphotransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RMD9	YGL107C	Mitochondrial protein that controls mitochondrial gene expression	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MMM1	YLL006W	ER integral membrane protein, ERMES complex subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ECT1	YGR007W	Ethanolamine-phosphate cytidylyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SHQ1	YIL104C	Chaperone protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HTA1	YDR225W	Histone H2A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP46	YGR095C	Exosome non-catalytic core component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PSH1	YOL054W	E3 ubiquitin ligase targeting centromere-binding protein Cse4p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDL157C	YDL157C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SIR4	YDR227W	SIR protein involved in assembly of silent chromatin domains	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPB4	YFL002C	Putative ATP-dependent RNA helicase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAP155	YFR040W	Protein required for function of the Sit4p protein phosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NNF2	YGR089W	Protein that exhibits physical and genetic interactions with Rpb8p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KRR1	YCL059C	Nucleolar protein required for rRNA synthesis and ribosomal assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRS130	YMR218C	Component of transport protein particle (TRAPP) complex II	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PEX29	YDR479C	ER-resident protein involved in peroxisomal biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MSC3	YLR219W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YPR147C	YPR147C	Bifunctional triacylglycerol lipase and short chain ester hydrolase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MDM34	YGL219C	Mitochondrial component of the ERMES complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPT8	YLR055C	Subunit of the SAGA transcriptional regulatory complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KIN4	YOR233W	Serine/threonine protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUP100	YKL068W	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TSC10	YBR265W	3-ketosphinganine reductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PCL2	YDL127W	Cyclin, interacts with cyclin-dependent kinase Pho85p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MIG1	YGL035C	Transcription factor involved in glucose repression	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YJU3	YKL094W	Monoglyceride lipase (MGL) that hydrolyzes fatty acid ethyl esters	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
URC2	YDR520C	Putative Zn(II)2Cys6 motif containing transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VPS5	YOR069W	Nexin-1 homolog	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PNG1	YPL096W	Conserved peptide N-glycanase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUP57	YGR119C	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VMS1	YDR049W	Peptidyl-tRNA hydrolase that releases stalled peptides from ribosomes,	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DML1	YMR211W	Essential protein involved in mtDNA inheritance	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SIR2	YDL042C	Conserved NAD+ dependent histone deacetylase of the Sirtuin family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FAR11	YNL127W	Protein involved in recovery from cell cycle arrest	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPN9	YDR427W	Non-ATPase regulatory subunit of the 26S proteasome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YNR066C	YNR066C	Putative membrane-localized protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
JHD1	YER051W	JmjC domain family histone demethylase specific for H3-K36	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DOT1	YDR440W	Nucleosomal histone H3-Lys79 methylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NIT1	YIL164C	Nitrilase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YJR012C	YJR012C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RNA15	YGL044C	Component of the cleavage and polyadenylation factor I (CF I)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRS3	YJL133W	Iron transporter, mediates Fe2+ transport across inner mito membrane	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAD5	YLR032W	DNA helicase/Ubiquitin ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FIR1	YER032W	Protein involved in 3' mRNA processing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS21A	YKR057W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RTT103	YDR289C	Protein involved in transcription termination by RNA polymerase II	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DPB11	YJL090C	DNA replication initiation protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDR210W	YDR210W	Predicted tail-anchored plasma membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIM17	YJL143W	Essential component of the TIM23 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YCR023C	YCR023C	Vacuolar membrane protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SIA1	YOR137C	Protein of unassigned function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWI1	YPL016W	Subunit of the SWI/SNF chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPS18	YNL306W	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EPL1	YFL024C	Subunit of NuA4, an essential histone H4/H2A acetyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NDC80	YIL144W	Component of the kinetochore-associated Ndc80 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWM1	YDR260C	Subunit of the anaphase-promoting complex (APC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPL6	YHR147C	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PEX34	YCL056C	Protein that regulates peroxisome populations	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YRB2	YIL063C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HAP4	YKL109W	Transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP11	YKL099C	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SGV1	YPR161C	Cyclin (Bur2p)-dependent protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VTC1	YER072W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SEN34	YAR008W	Subunit of the tRNA splicing endonuclease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DPB4	YDR121W	Subunit of DNA pol epsilon and of ISW2 chromatin accessibility complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PDR8	YLR266C	Transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GCR2	YNL199C	Transcriptional activator of genes involved in glycolysis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GPR1	YDL035C	Plasma membrane G protein coupled receptor (GPCR)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RUP1	YOR138C	Protein that regulates ubiquitination of Rsp5p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HGH1	YGR187C	Chaperone protein for translation factor eEF2	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PTA1	YAL043C	Subunit of holo-CPF	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STB4	YMR019W	Putative transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RTS3	YGR161C	Putative component of the protein phosphatase type 2A complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAD1	YFR005C	Conserved zinc-finger domain protein involved in pre-mRNA splicing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STS1	YIR011C	Protein required for localizing proteasomes to the nucleus	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRP18	YGR006W	Splicing factor and component of snRNP U5	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ZDS2	YML109W	Protein with a role in regulating Swe1p-dependent polarized growth	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ISU1	YPL135W	Conserved protein of the mitochondrial matrix	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MMT1	YMR177W	Putative metal transporter involved in mitochondrial iron accumulation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ROD1	YOR018W	Alpha-arrestin involved in ubiquitin-dependent endocytosis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSM24	YDR175C	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SER3	YER081W	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FRK1	YPL141C	Protein kinase of unknown cellular role	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ERV14	YGL054C	COPII-coated vesicle protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HOS2	YGL194C	Histone deacetylase and subunit of Set3 and Rpd3L complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GEA2	YEL022W	Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YBR238C	YBR238C	Mitochondrial membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LTV1	YKL143W	Subunit of the EGO/GSE complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PCP1	YGR101W	Mitochondrial serine protease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YPL039W	YPL039W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP9	YHR196W	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PKC1	YBL105C	Protein serine/threonine kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOF2	YKR010C	Protein required for rDNA silencing and mitotic rDNA condensation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PML39	YML107C	Protein required for nuclear retention of unspliced pre-mRNAs	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FRT1	YOR324C	Tail-anchored ER membrane protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FAB1	YFR019W	1-phosphatidylinositol-3-phosphate 5-kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SEC5	YDR166C	Essential 107kDa subunit of the exocyst complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPL1	YDR116C	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MYO1	YHR023W	Type II myosin heavy chain	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOB1	YOR056C	Protein involved in proteasomal and 40S ribosomal subunit biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YKR045C	YKR045C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GYP8	YFL027C	GTPase-activating protein for yeast Rab family members	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HHF1	YBR009C	Histone H4	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
POM34	YLR018C	Subunit of the transmembrane ring of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RCL1	YOL010W	Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPA12	YJR063W	RNA polymerase I subunit A12.2	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RHO4	YKR055W	Non-essential small GTPase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ELP6	YMR312W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SEC9	YGR009C	t-SNARE protein required for secretory vesicle-plasma membrane fusion	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FMP32	YFL046W	Regulator of mitochondrial proline metabolism	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPS5	YBR251W	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TBS1	YBR150C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPB4	YJL140W	RNA polymerase II subunit B32	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VPS15	YBR097W	Serine/threonine protein kinase involved in vacuolar protein sorting	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MIL1	YFL034W	Predicted lipase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRN6	YBL014C	Component of the core factor (CF) rDNA transcription factor complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
REH1	YLR387C	Cytoplasmic 60S subunit biogenesis factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP43	YCR035C	Exosome non-catalytic core component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GRR1	YJR090C	F-box protein component of an SCF ubiquitin-ligase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NST1	YNL091W	Translational inhibitor and suppressor of proteasome-assembly defects	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PAP1	YKR002W	Poly(A) polymerase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YVH1	YIR026C	Dual specificity protein phosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RNT1	YMR239C	Nuclear dsRNA-specific ribonuclease (RNase III)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PGD1	YGL025C	Subunit of the RNA polymerase II mediator complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPL3	YMR024W	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TEA1	YOR337W	Ty1 enhancer activator involved in Ty enhancer-mediated transcription	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PHM8	YER037W	Lysophosphatidic acid (LPA) phosphatase, nucleotidase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RBA50	YDR527W	Protein involved in transcription	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSC2	YLR357W	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YLH47	YPR125W	Mitochondrial inner membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HLJ1	YMR161W	Co-chaperone for Hsp40p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MUS81	YDR386W	Subunit of structure-specific Mms4p-Mus81p endonuclease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TAF2	YCR042C	TFIID subunit (150 kDa)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGR237C	YGR237C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRP2	YPR166C	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NVJ1	YHR195W	Nuclear envelope protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NGG1	YDR176W	Subunit of chromatin modifying histone acetyltransferase complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UBP16	YPL072W	Deubiquitinating enzyme anchored to the outer mitochondrial membrane	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YLR108C	YLR108C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UMP1	YBR173C	Chaperone required for correct maturation of the 20S proteasome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP19	YGR251W	Ribosome biogenesis factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HCM1	YCR065W	Forkhead transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YML082W	YML082W	Putative protein predicted to have carbon-sulfur lyase activity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MED2	YDL005C	Subunit of the RNA polymerase II mediator complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GON7	YJL184W	Component of the EKC/KEOPS protein complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SHH4	YLR164W	Putative alternate subunit of succinate dehydrogenase (SDH)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
OCA5	YHL029C	Cytoplasmic protein required for replication of Brome mosaic virus	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MAK16	YAL025C	Essential nuclear protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPC34	YKR037C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STE14	YDR410C	Farnesyl cysteine-carboxyl methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TFB4	YPR056W	Subunit of TFIIH complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RFU1	YLR073C	Protein that inhibits Doa4p deubiquitinating activity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SKY1	YMR216C	SR protein kinase (SRPK)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HIS3	YOR202W	Imidazoleglycerol-phosphate dehydratase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDR249C	YDR249C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NFI1	YOR156C	SUMO E3 ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGR017W	YGR017W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GYP7	YDL234C	GTPase-activating protein for yeast Rab family members	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NAT2	YGR147C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UIP5	YKR044W	Protein of unknown function that interacts with Ulp1p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MLP1	YKR095W	Myosin-like protein associated with the nuclear envelope	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SOK2	YMR016C	Nuclear protein that negatively regulates pseudohyphal differentiation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GAB1	YLR459W	Subunit of the glycosylphosphatidylinositol transamidase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SKA1	YKL023W	SKI complex-associated protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSM7	YJR113C	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SHE3	YBR130C	Protein adaptor between Myo4p and the She2p-mRNA complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IES1	YFL013C	Subunit of the INO80 chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RIM11	YMR139W	Protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRX14	YDR115W	Putative mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP4	YHR069C	Exosome non-catalytic core component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP15	YPR143W	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUM1	YDR150W	Protein required for nuclear migration	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VIK1	YPL253C	Protein that forms a kinesin-14 heterodimeric motor with Kar3p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SSH4	YKL124W	Specificity factor required for Rsp5p-dependent ubiquitination	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
WHI4	YDL224C	Putative RNA binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MDM30	YLR368W	F-box component of an SCF ubiquitin protein ligase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DXO1	YDR370C	Cytoplasmic 5' exoribonuclease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HRT1	YOL133W	RING-H2 domain core subunit of multiple ubiquitin ligase complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UPS1	YLR193C	Phosphatidic acid transfer protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIM21	YGR033C	Nonessential component of the TIM23 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HHF2	YNL030W	Histone H4	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ROX1	YPR065W	Heme-dependent repressor of hypoxic genes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YCK3	YER123W	Palmitoylated vacuolar membrane-localized casein kinase I isoform	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MAM33	YIL070C	Acidic protein of the mitochondrial matrix	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FIP1	YJR093C	Subunit of cleavage polyadenylation factor (CPF)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YOX1	YML027W	Homeobox transcriptional repressor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FHL1	YPR104C	Regulator of ribosomal protein (RP) transcription	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FMC1	YIL098C	Mitochondrial matrix protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRK1	YIL095W	Ser/Thr protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GFD1	YMR255W	Coiled-coiled protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MDM32	YOR147W	Mitochondrial inner membrane protein with similarity to Mdm31p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
REX4	YOL080C	Putative RNA exonuclease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GPI12	YMR281W	ER membrane protein involved in the second step of GPI anchor assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MTO1	YGL236C	Mitochondrial protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPP1	YPL138C	Subunit of COMPASS (Set1C)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
POL32	YJR043C	Third subunit of DNA polymerase delta	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PIB2	YGL023C	Phosphatidylinositol 3-phosphate binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPL44	YMR225C	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NDD1	YOR372C	Transcriptional activator essential for nuclear division	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RIB7	YBR153W	Diaminohydroxyphoshoribosylaminopyrimidine deaminase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MTR2	YKL186C	mRNA transport regulator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VHR2	YER064C	Non-essential nuclear protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MCH5	YOR306C	Plasma membrane riboflavin transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GLG1	YKR058W	Glycogenin glucosyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGR127W	YGR127W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRI2	YKL045W	Subunit of DNA primase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PEX10	YDR265W	Peroxisomal membrane E3 ubiquitin ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL31B	YLR406C	Ribosomal 60S subunit protein L31B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDL211C	YDL211C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PXP2	YJR111C	Peroxisomal matrix protein with naturally active promoter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGR283C	YGR283C	Putative methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RLP24	YLR009W	Essential protein required for ribosomal large subunit biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RTG3	YBL103C	bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YKR011C	YKR011C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRX16	YDR132C	Protein that associates with the large mitoribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LDB7	YBL006C	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GOR1	YNL274C	Glyoxylate reductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DSE3	YOR264W	Daughter cell-specific protein, may help establish daughter fate	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MEH1	YKR007W	Subunit of the EGO/GSE complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
INM2	YDR287W	Inositol monophosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MED11	YMR112C	Subunit of the RNA polymerase II mediator complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SNC2	YOR327C	Vesicle membrane receptor protein (v-SNARE)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TYE7	YOR344C	Serine-rich protein that contains a bHLH DNA binding motif	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IOC4	YMR044W	Member of a complex (Isw1b) with Isw1p and Ioc2p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWI6	YLR182W	Transcription cofactor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP14	YKL082C	Essential protein, constituent of 66S pre-ribosomal particles	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPI1	YIL119C	Transcription factor, allelic differences between S288C and Sigma1278b	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YPL077C	YPL077C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP53	YPL146C	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YER034W	YER034W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RHO5	YNL180C	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAP1	YER047C	Putative ATPase of the AAA family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NTR2	YKR022C	Essential protein that forms a dimer with Ntr1p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TPO4	YOR273C	Polyamine transporter of the major facilitator superfamily	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRN2	YLR119W	Component of the ESCRT-I complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MIC12	YBR262C	Component of the MICOS complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAP30	YMR263W	Component of Rpd3L histone deacetylase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STD1	YOR047C	Protein involved in control of glucose-regulated gene expression	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPL50	YNR022C	Mitochondrial ribosomal protein of the large subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
VTS1	YOR359W	Flap-structured DNA-binding and RNA-binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LRG1	YDL240W	GTPase-activating protein (GAP)	genetic	2	1	2	Synthetic Rescue, Synthetic Rescue
ISU2	YOR226C	Mitochondrial protein required for iron-sulfur protein synthesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GIS3	YLR094C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YCL002C	YCL002C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SUT1	YGL162W	Zn(II)2Cys6 family transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWS2	YNL081C	Putative mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRX20	YFR045W	Putative mitochondrial transport protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
QRI7	YDL104C	Protein involved in threonylcarbamoyl adenosine biosynthesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SYH1	YPL105C	Protein of unknown function that influences nuclear pore distribution	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RBH1	YJL181W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP36	YOR287C	Component of 90S preribosomes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RGI1	YER067W	Protein involved in energy metabolism under respiratory conditions	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP23	YOR004W	Component of the small subunit processome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
INO4	YOL108C	Transcription factor involved in phospholipid synthesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YOP1	YPR028W	Reticulon-interacting protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RQT4	YKR023W	Subunit of ribosome-associated quality control trigger complex (RQT)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STE50	YCL032W	Adaptor protein for various signaling pathways	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRS2	YOR334W	Mitochondrial inner membrane Mg(2+) channel	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YNL146W	YNL146W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TAM41	YGR046W	Mitochondrial phosphatidate cytidylyltransferase (CDP-DAG synthase)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SHG1	YBR258C	Subunit of the COMPASS (Set1C) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPI1	YER150W	GPI-anchored cell wall protein involved in weak acid resistance	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HLR1	YDR528W	Protein involved in regulation of cell wall composition and integrity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSM27	YGR215W	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MFT1	YML062C	Subunit of the THO complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NDL1	YLR254C	Homolog of nuclear distribution factor NudE	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRG9	YNL213C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPL2	YHR136C	Protein with similarity to cyclin-dependent kinase inhibitors	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPT2	YER161C	Protein involved in negative regulation of transcription	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EST3	YIL009C-A	Component of the telomerase holoenzyme	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PCL1	YNL289W	Cyclin, interacts with cyclin-dependent kinase Pho85p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MAD1	YGL086W	Coiled-coil protein involved in spindle-assembly checkpoint	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MOT3	YMR070W	Transcriptional repressor, activator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LTO1	YNL260C	Substrate-specific adaptor protein involved in apo-Rli1p maturation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDL177C	YDL177C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRN11	YML043C	Component of the core factor (CF) rDNA transcription factor complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL40B	YKR094C	Ubiquitin-ribosomal 60S subunit protein L40B fusion protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IGO2	YHR132W-A	Protein required for initiation of G0 program	genetic	2	1	2	Phenotypic Suppression, Phenotypic Suppression
ATP22	YDR350C	Specific translational activator for the mitochondrial ATP6 mRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CCM1	YGR150C	Mitochondrial 15S rRNA-binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
APM1	YPL259C	Mu1-like medium subunit of the AP-1 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DAM1	YGR113W	Essential subunit of the Dam1 complex (aka DASH complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUD21	YOR078W	Component of small ribosomal subunit (SSU) processosome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CCT2	YIL142W	Subunit beta of the cytosolic chaperonin Cct ring complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDC25	YLR310C	Membrane bound guanine nucleotide exchange factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AVT4	YNL101W	Vacuolar transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATG9	YDL149W	Transmembrane protein involved in forming Cvt and autophagic vesicles	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BRE2	YLR015W	Subunit of COMPASS (Set1C) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIM17	YHL021C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AKL1	YBR059C	Ser/Thr protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDC53	YDL132W	Cullin	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CLN1	YMR199W	G1 cyclin involved in regulation of the cell cycle	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
APE1	YKL103C	Vacuolar aminopeptidase yscI	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ADH4	YGL256W	Alcohol dehydrogenase isoenzyme type IV	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CBP3	YPL215W	Mitochondrial protein required for assembly of cytochrome bc1 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIM46	YHR199C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CAF4	YKR036C	WD40 repeat-containing protein associated with the CCR4-NOT complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BEM4	YPL161C	Protein involved in establishment of cell polarity and bud emergence	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATG4	YNL223W	Conserved cysteine protease required for autophagy	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIR1	YIL079C	Zinc knuckle protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CTR1	YPR124W	High-affinity copper transporter of plasma membrane	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CBP2	YHL038C	Required for splicing of the group I intron bI5 of the COB pre-mRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ALD5	YER073W	Mitochondrial aldehyde dehydrogenase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
APE3	YBR286W	Vacuolar aminopeptidase Y	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDH1	YGL003C	Activator of anaphase-promoting complex/cyclosome (APC/C)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CIN5	YOR028C	Basic leucine zipper (bZIP) transcription factor of the yAP-1 family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BIR1	YJR089W	Subunit of chromosomal passenger complex (CPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARO9	YHR137W	Aromatic aminotransferase II	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
APL4	YPR029C	Gamma-adaptin	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASI3	YNL008C	Subunit of the inner nuclear membrane Asi ubiquitin ligase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DAD2	YKR083C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DDI1	YER143W	Aspartic-type endopeptidase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATG1	YGL180W	Protein serine/threonine kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CIT2	YCR005C	Citrate synthase, peroxisomal isozyme involved in glyoxylate cycle	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CUP2	YGL166W	Copper-binding transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARG81	YML099C	Zinc finger transcription factor involved in arginine-responsive genes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AFT1	YGL071W	Transcription factor involved in iron utilization and homeostasis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASM4	YDL088C	FG-nucleoporin component of central core of nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATG27	YJL178C	Type I membrane protein involved in autophagy and the Cvt pathway	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDC34	YDR054C	Ubiquitin-conjugating enzyme (E2)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ACF4	YJR083C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIM18	YHR198C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CHA4	YLR098C	DNA binding transcriptional activator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASK1	YKL052C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BLI1	YKL061W	Subunit of the BLOC-1 complex involved in endosomal maturation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIM4	YBR194W	Protein proposed to be associated with the nuclear pore complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDC27	YBL084C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DAL81	YIR023W	Positive regulator of genes in multiple nitrogen degradation pathways	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CBF1	YJR060W	Basic helix-loop-helix (bHLH) protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CLB5	YPR120C	B-type cyclin involved in DNA replication during S phase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CLC1	YGR167W	Clathrin light chain	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
COX18	YGR062C	Protein required for membrane insertion of C-terminus of Cox2p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DBF4	YDR052C	Regulatory subunit of Cdc7p-Dbf4p kinase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CCZ1	YBR131W	Subunit of a heterodimeric guanine nucleotide exchange factor (GEF)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CSG2	YBR036C	Endoplasmic reticulum membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CCP1	YKR066C	Mitochondrial cytochrome-c peroxidase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ABF1	YKL112W	DNA binding protein with possible chromatin-reorganizing activity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CAF16	YFL028C	Part of evolutionarily-conserved CCR4-NOT regulatory complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CAD1	YDR423C	AP-1-like basic leucine zipper (bZIP) transcriptional activator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATC1	YDR184C	Nuclear protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARK1	YNL020C	Ser/Thr protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BAT2	YJR148W	Cytosolic branched-chain amino acid (BCAA) aminotransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CLA4	YNL298W	Cdc42p-activated signal transducing kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASH1	YKL185W	Component of the Rpd3L histone deacetylase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
COX17	YLL009C	Copper metallochaperone that transfers copper to Sco1p and Cox11p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BSD2	YBR290W	Heavy metal ion homeostasis protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DBP6	YNR038W	Essential protein involved in ribosome biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CBP1	YJL209W	Mitochondrial protein, regulator of COB mRNA stability and translation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASN2	YGR124W	Asparagine synthetase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIM44	YPL158C	Regulator of Cdc42p and Rho1p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ADI1	YMR009W	Acireductone dioxygenease involved in methionine salvage pathway	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
APM2	YHL019C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASF2	YDL197C	Anti-silencing protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BTS1	YPL069C	Geranylgeranyl diphosphate synthase (GGPPS)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUD22	YMR014W	Protein required for rRNA maturation and ribosomal subunit biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ANT1	YPR128C	Peroxisomal adenine nucleotide transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATP15	YPL271W	Epsilon subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATP16	YDL004W	Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BTT1	YDR252W	Heterotrimeric nascent polypeptide-associated complex beta3 subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASE1	YOR058C	Mitotic spindle midzone-localized microtubule bundling protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUL2	YML111W	Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARG56	YER069W	Acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CWP2	YKL096W-A	Covalently linked cell wall mannoprotein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CUP9	YPL177C	Homeodomain-containing transcriptional repressor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BST1	YFL025C	GPI inositol deacylase of the endoplasmic reticulum (ER)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIM29	YKR074W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CMK2	YOL016C	Calmodulin-dependent protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DEG1	YFL001W	tRNA:pseudouridine synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AGE1	YDR524C	ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CYC1	YJR048W	Cytochrome c, isoform 1	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATR1	YML116W	Multidrug efflux pump of the major facilitator superfamily	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASP1	YDR321W	Cytosolic L-asparaginase, involved in asparagine catabolism	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CRH1	YGR189C	Chitin transglycosylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASI2	YNL159C	Subunit of the inner nuclear membrane Asi ubiquitin ligase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CYC2	YOR037W	Mitochondrial peripheral inner membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARO10	YDR380W	Phenylpyruvate decarboxylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDS1	YBR029C	Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ALG2	YGL065C	Mannosyltransferase in the N-linked glycosylation pathway	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AVL9	YLR114C	Conserved protein involved in exocytic transport from the Golgi	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CCW14	YLR390W-A	Covalently linked cell wall glycoprotein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CSI2	YOL007C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CTS1	YLR286C	Endochitinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATG41	YPL250C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
COX13	YGL191W	Subunit VIa of cytochrome c oxidase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
COX9	YDL067C	Subunit VIIa of cytochrome c oxidase (Complex IV)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARN1	YHL040C	ARN family transporter for siderophore-iron chelates	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
COX8	YLR395C	Subunit VIII of cytochrome c oxidase (Complex IV)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CYT2	YKL087C	Cytochrome c1 heme lyase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BER1	YLR412W	Protein involved in microtubule-related processes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DGK1	YOR311C	Diacylglycerol kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CWP1	YKL096W	Cell wall mannoprotein that localizes to birth scars of daughter cells	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATP23	YNR020C	Putative metalloprotease of the mitochondrial inner membrane	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DBR1	YKL149C	RNA lariat debranching enzyme	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STH1	YIL126W	ATPase component of the RSC chromatin remodeling complex	genetic	2	2	1	Dosage Rescue, Synthetic Growth Defect
TIF4631	YGR162W	Translation initiation factor eIF4G and scaffold protein	physical	2	2	1	Affinity Capture-Western, Affinity Capture-RNA
NOT3	YIL038C	Component of the CCR4-NOT core complex, involved in mRNA decapping	genetic	2	2	1	Synthetic Growth Defect, Synthetic Rescue
SSD1	YDR293C	Translational repressor	genetic	2	2	1	Dosage Rescue, Synthetic Growth Defect
ESA1	YOR244W	Catalytic subunit of the histone acetyltransferase complex (NuA4)	genetic	2	1	1	Synthetic Growth Defect, Synthetic Growth Defect
MPS3	YJL019W	Nuclear envelope protein	genetic	2	1	1	Synthetic Rescue, Synthetic Rescue
HDA1	YNL021W	Catalytic subunit of class II HDA1 histone deacetylase complex	genetic	2	1	1	Dosage Lethality, Dosage Lethality
STE12	YHR084W	Transcription factor that is activated by a MAPK signaling cascade	regulation	1	1	1	DNA to cDNA expression microarray evidence
SPT10	YJL127C	Histone H3 acetylase with a role in transcriptional regulation	regulation	1	1	1	DNA to cDNA expression microarray evidence
TEC1	YBR083W	Transcription factor targeting filamentation genes and Ty1 expression	regulation	1	1	1	DNA to cDNA expression microarray evidence
STP1	YDR463W	Transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YAP6	YDR259C	Basic leucine zipper (bZIP) transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TFC7	YOR110W	RNA pol III transcription initiation factor complex (TFIIIC) subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YAP5	YIR018W	Basic leucine zipper (bZIP) iron-sensing transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
INO2	YDR123C	Transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PUT3	YKL015W	Transcriptional activator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC73	YLR418C	Component of the Paf1p complex	physical	1	1	1	Affinity Capture-RNA
CDC40	YDR364C	Pre-mRNA splicing factor	physical	1	1	1	Affinity Capture-RNA
CLF1	YLR117C	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
CWC2	YDL209C	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
CWC25	YNL245C	Splicing factor required for the first step of pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
AME1	YBR211C	Essential kinetochore protein associated with microtubules and SPBs	physical	1	1	1	Affinity Capture-RNA
CHL4	YDR254W	Outer kinetochore protein required for chromosome stability	physical	1	1	1	Affinity Capture-RNA
CTF19	YPL018W	Outer kinetochore protein, needed for accurate chromosome segregation	physical	1	1	1	Affinity Capture-RNA
CTF3	YLR381W	Outer kinetochore protein that forms a complex with Mcm16p and Mcm22p	physical	1	1	1	Affinity Capture-RNA
AIM25	YJR100C	Mitochondria protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CBF5	YLR175W	Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs	physical	1	1	1	Affinity Capture-RNA
CKA1	YIL035C	Alpha catalytic subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
CKB2	YOR039W	Beta' regulatory subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
ARP4	YJL081C	Nuclear actin-related protein involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
BRX1	YOL077C	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
CAB3	YKL088W	Subunit of PPCDC and CoA-SPC complexes involved in CoA biosynthesis	physical	1	1	1	Affinity Capture-RNA
CDC42	YLR229C	Small rho-like GTPase	physical	1	1	1	Affinity Capture-RNA
CIC1	YHR052W	Essential protein that interacts with proteasome components	physical	1	1	1	Affinity Capture-RNA
ARC1	YGL105W	Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases	physical	1	1	1	Affinity Capture-RNA
ALB1	YJL122W	Shuttling pre-60S factor	physical	1	1	1	Affinity Capture-RNA
AIR2	YDL175C	RNA-binding subunit of the TRAMP nuclear RNA surveillance complex	physical	1	1	1	Affinity Capture-RNA
CDC33	YOL139C	Translation initiation factor eIF4E	genetic	1	1	1	Synthetic Growth Defect
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	genetic	1	1	1	Dosage Rescue
CBC2	YPL178W	Small subunit of the heterodimeric cap binding complex with Sto1p	physical	1	1	1	Affinity Capture-MS
ARX1	YDR101C	Nuclear export factor for the ribosomal pre-60S subunit	physical	1	1	1	Affinity Capture-RNA
CFT2	YLR115W	Subunit of the mRNA cleavage and polyadenlylation factor (CPF)	physical	1	1	1	Affinity Capture-RNA
AAH1	YNL141W	Adenine deaminase (adenine aminohydrolase)	physical	1	1	1	Affinity Capture-RNA
BCP1	YDR361C	Essential nuclear chaperone for ribosomal protein Rpl23p	physical	1	1	1	Affinity Capture-RNA
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	Affinity Capture-RNA
BMS1	YPL217C	GTPase required for ribosomal subunit synthesis and rRNA processing	physical	1	1	1	Affinity Capture-RNA
ADE13	YLR359W	Adenylosuccinate lyase	physical	1	1	1	Affinity Capture-RNA
APL2	YKL135C	Beta-adaptin subunit of the clathrin-associated protein (AP-1) complex	physical	1	1	1	Affinity Capture-RNA
APL1	YJR005W	Beta-adaptin	physical	1	1	1	Affinity Capture-RNA
ARC18	YLR370C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARC19	YKL013C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARC35	YNR035C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARC40	YBR234C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARD1	YHR013C	Subunit of protein N-terminal acetyltransferase NatA	physical	1	1	1	Affinity Capture-RNA
ARO1	YDR127W	Pentafunctional arom protein	physical	1	1	1	Affinity Capture-RNA
ARP2	YDL029W	Essential component of the Arp2/3 complex	physical	1	1	1	Affinity Capture-MS
ASF1	YJL115W	Nucleosome assembly factor	physical	1	1	1	Affinity Capture-RNA
BDF1	YLR399C	BET family transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
BET3	YKR068C	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
BEM2	YER155C	Rho GTPase activating protein (RhoGAP)	physical	1	1	1	Affinity Capture-RNA
CAP1	YKL007W	Alpha subunit of the capping protein heterodimer (Cap1p and Cap2p)	physical	1	1	1	Affinity Capture-RNA
CCA1	YER168C	ATP (CTP):tRNA-specific tRNA nucleotidyltransferase	physical	1	1	1	Affinity Capture-RNA
CCL1	YPR025C	Cyclin partner of the cyclin-dependent kinase (CDK) Kin28p	physical	1	1	1	Affinity Capture-RNA
CAF130	YGR134W	Subunit of the CCR4-NOT transcriptional regulatory complex	physical	1	1	1	Affinity Capture-RNA
CAF40	YNL288W	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	PCA
CDC14	YFR028C	Protein phosphatase required for mitotic exit	physical	1	1	1	Affinity Capture-RNA
BOI2	YER114C	Protein involved in polar growth	physical	1	1	1	Affinity Capture-RNA
CDC28	YBR160W	Cyclin-dependent kinase (CDK) catalytic subunit	genetic	1	1	1	Synthetic Lethality
CDC3	YLR314C	Component of the septin ring that is required for cytokinesis	physical	1	1	1	Affinity Capture-RNA
CDC36	YDL165W	Component of the CCR4-NOT core complex, involved in mRNA decapping	physical	1	1	1	Affinity Capture-RNA
CDC45	YLR103C	DNA replication initiation factor	physical	1	1	1	Affinity Capture-RNA
BNI1	YNL271C	Formin	physical	1	1	1	Affinity Capture-RNA
CDC55	YGL190C	Regulatory subunit B of protein phosphatase 2A (PP2A)	physical	1	1	1	Affinity Capture-RNA
BUD31	YCR063W	Component of the SF3b subcomplex of the U2 snRNP	physical	1	1	1	Affinity Capture-RNA
AVO1	YOL078W	Component of the membrane-bound TORC2 complex	physical	1	1	1	Affinity Capture-RNA
CKS1	YBR135W	Cyclin-dependent protein kinase regulatory subunit and adaptor	physical	1	1	1	Affinity Capture-RNA
CNS1	YBR155W	TPR-containing co-chaperone	physical	1	1	1	Affinity Capture-RNA
COX5A	YNL052W	Subunit Va of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
COX6	YHR051W	Subunit VI of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
CPR1	YDR155C	Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
CUS1	YMR240C	Protein required for assembly of U2 snRNP into the spliceosome	physical	1	1	1	Affinity Capture-RNA
CYR1	YJL005W	Adenylate cyclase	physical	1	1	1	Affinity Capture-RNA
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	genetic	1	1	1	Phenotypic Suppression
CIA2	YHR122W	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	physical	1	1	1	Affinity Capture-RNA
CDC16	YKL022C	Subunit of the anaphase-promoting complex/cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
CDC23	YHR166C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
CCT4	YDL143W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
LSM1	YJL124C	Lsm (Like Sm) protein	genetic	1	1	1	Phenotypic Suppression
EDC3	YEL015W	Non-essential conserved protein with a role in mRNA decapping	genetic	1	1	1	Phenotypic Suppression
RPL40A	YIL148W	Ubiquitin-ribosomal 60S subunit protein L40A fusion protein	physical	1	1	1	Affinity Capture-MS
LSM4	YER112W	Lsm (Like Sm) protein	genetic	1	1	1	Phenotypic Suppression
MOT2	YER068W	Ubiquitin-protein ligase subunit of the CCR4-NOT complex	genetic	1	1	1	Synthetic Lethality
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	physical	1	1	1	PCA
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	genetic	1	1	1	Phenotypic Enhancement
LSM12	YHR121W	Protein of unknown function that may function in RNA processing	genetic	1	1	1	Synthetic Rescue
TIS11	YLR136C	mRNA-binding protein expressed during iron starvation	genetic	1	1	1	Synthetic Rescue
HEK2	YBL032W	RNA binding protein involved in asymmetric localization of ASH1 mRNA	genetic	1	1	1	Dosage Rescue
SUS1	YBR111W-A	Global transcriptional regulator, component of SAGA, TREX-2 complexes	genetic	1	1	1	Synthetic Growth Defect
IGO1	YNL157W	Protein required for initiation of G0 program	physical	1	1	1	Affinity Capture-Western
TEF1	YPR080W	Translational elongation factor EF-1 alpha	physical	1	1	1	Affinity Capture-MS
NGR1	YBR212W	RNA binding protein that negatively regulates growth rate	genetic	1	1	1	Phenotypic Suppression
EFB1	YAL003W	Translation elongation factor 1 beta	physical	1	1	1	Affinity Capture-RNA
SSA3	YBL075C	ATPase involved in protein folding and the response to stress	physical	1	1	1	Affinity Capture-RNA
YRO2	YBR054W	Protein with a putative role in response to acid stress	physical	1	1	1	Affinity Capture-RNA
YCL049C	YCL049C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
HSP30	YCR021C	Negative regulator of the H(+)-ATPase Pma1p	physical	1	1	1	Affinity Capture-RNA
STP4	YDL048C	Protein containing a Kruppel-type zinc-finger domain	physical	1	1	1	Affinity Capture-RNA
YRB1	YDR002W	Ran GTPase binding protein	physical	1	1	1	Affinity Capture-RNA
MTH1	YDR277C	Negative regulator of the glucose-sensing signal transduction pathway	physical	1	1	1	Affinity Capture-RNA
NPL3	YDR432W	RNA-binding protein	genetic	1	1	1	Synthetic Growth Defect
PMP2	YEL017C-A	Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p)	physical	1	1	1	Affinity Capture-RNA
YEL025C	YEL025C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PRE1	YER012W	Beta 4 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
YGL082W	YGL082W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GPG1	YGL121C	Proposed gamma subunit of the heterotrimeric G protein	physical	1	1	1	Affinity Capture-RNA
TPO2	YGR138C	Polyamine transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
IRR1	YIL026C	Subunit of the cohesin complex	physical	1	1	1	Affinity Capture-RNA
KGD1	YIL125W	Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex	physical	1	1	1	Affinity Capture-RNA
YJL047C-A	YJL047C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TDH2	YJR009C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2	physical	1	1	1	Affinity Capture-RNA
YPS3	YLR121C	Aspartic protease	physical	1	1	1	Affinity Capture-RNA
YLR154C-G	YLR154C-G	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
HRI1	YLR301W	Protein of unknown function that interacts with Sec72p and Hrr25p	physical	1	1	1	Affinity Capture-RNA
PHO84	YML123C	High-affinity inorganic phosphate (Pi) transporter	physical	1	1	1	Affinity Capture-RNA
TPM1	YNL079C	Major isoform of tropomyosin	physical	1	1	1	Affinity Capture-RNA
SRV2	YNL138W	CAP (cyclase-associated protein)	physical	1	1	1	Affinity Capture-RNA
ECM3	YOR092W	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PFY1	YOR122C	Profilin	physical	1	1	1	Affinity Capture-RNA
LCB4	YOR171C	Sphingoid long-chain base kinase	physical	1	1	1	Affinity Capture-RNA
GCR1	YPL075W	Transcriptional activator of genes involved in glycolysis	physical	1	1	1	Affinity Capture-RNA
SPO24	YPR036W-A	Small (67 amino acids) protein involved in sporulation	physical	1	1	1	Affinity Capture-RNA
PAB1	YER165W	Poly(A) binding protein	genetic	1	1	1	Dosage Rescue
RPL2A	YFR031C-A	Ribosomal 60S subunit protein L2A	physical	1	1	1	Affinity Capture-MS
RPL3	YOR063W	Ribosomal 60S subunit protein L3	physical	1	1	1	Affinity Capture-MS
RPL32	YBL092W	Ribosomal 60S subunit protein L32	physical	1	1	1	Affinity Capture-MS
RPL8B	YLL045C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Affinity Capture-MS
RPL9A	YGL147C	Ribosomal 60S subunit protein L9A	physical	1	1	1	Affinity Capture-MS
RPS20	YHL015W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS24A	YER074W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS28A	YOR167C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS30A	YLR287C-A	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
VPS1	YKR001C	Dynamin-like GTPase required for vacuolar sorting	physical	1	1	1	Affinity Capture-MS
GLN4	YOR168W	Glutamine tRNA synthetase	physical	1	1	1	Affinity Capture-MS
HOM6	YJR139C	Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)	physical	1	1	1	Affinity Capture-MS
PRE10	YOR362C	Alpha 7 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-MS
PRT1	YOR361C	eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-MS
PRT1	YOR361C	eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3)	genetic	1	1	1	Phenotypic Suppression
RPL24B	YGR148C	Ribosomal 60S subunit protein L24B	physical	1	1	1	Affinity Capture-MS
RPM2	YML091C	Protein subunit of mitochondrial RNase P	genetic	1	1	1	Dosage Rescue
RPT5	YOR117W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-MS
WWM1	YFL010C	WW domain containing protein of unknown function	physical	1	1	1	Affinity Capture-MS
YCR087C-A	YCR087C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
YOL103W-B	YOL103W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
MYO3	YKL129C	One of two type I myosins	physical	1	1	1	Affinity Capture-MS
NOP2	YNL061W	rRNA m5C methyltransferase	physical	1	1	1	Affinity Capture-MS
RRG1	YDR065W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
MAY24	YPR153W	Peripheral ER membrane protein	physical	1	1	1	Affinity Capture-RNA
TRR2	YHR106W	Mitochondrial thioredoxin reductase	physical	1	1	1	Affinity Capture-RNA
KAR5	YMR065W	Protein required for nuclear membrane fusion during karyogamy	physical	1	1	1	Affinity Capture-RNA
SPO71	YDR104C	Meiosis-specific protein required for prospore membrane morphogenesis	physical	1	1	1	Affinity Capture-RNA
FIN1	YDR130C	Spindle pole body-related intermediate filament protein	physical	1	1	1	Affinity Capture-RNA
SEC39	YLR440C	Component of the Dsl1p tethering complex	physical	1	1	1	Affinity Capture-RNA
ECM32	YER176W	DNA dependent ATPase/DNA helicase	physical	1	1	1	Affinity Capture-RNA
MPD2	YOL088C	Member of the protein disulfide isomerase (PDI) family	physical	1	1	1	Affinity Capture-RNA
RDI1	YDL135C	Rho GDP dissociation inhibitor	physical	1	1	1	Affinity Capture-RNA
TFC7	YOR110W	RNA pol III transcription initiation factor complex (TFIIIC) subunit	physical	1	1	1	Affinity Capture-RNA
KIC1	YHR102W	Protein kinase of the PAK/Ste20 family, required for cell integrity	physical	1	1	1	Affinity Capture-RNA
MCY1	YGR012W	Putative cysteine synthase	physical	1	1	1	Affinity Capture-RNA
RRP6	YOR001W	Nuclear exosome exonuclease component	physical	1	1	1	Affinity Capture-RNA
PTI1	YGR156W	Essential component of CPF (cleavage and polyadenylation factor)	physical	1	1	1	Affinity Capture-RNA
NPL4	YBR170C	Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase	physical	1	1	1	Affinity Capture-RNA
LDH1	YBR204C	Serine hydrolase	physical	1	1	1	Affinity Capture-RNA
FLC1	YPL221W	Flavin adenine dinucleotide transporter	physical	1	1	1	Affinity Capture-RNA
YBR197C	YBR197C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NPR1	YNL183C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
YLL058W	YLL058W	Putative protein of unknown function with similarity to Str2p	physical	1	1	1	Affinity Capture-RNA
YPQ2	YDR352W	Putative vacuolar membrane transporter for cationic amino acids	physical	1	1	1	Affinity Capture-RNA
VAM6	YDL077C	Guanine nucleotide exchange factor for the GTPase Gtr1p	physical	1	1	1	Affinity Capture-RNA
KIP2	YPL155C	Kinesin-related motor protein involved in mitotic spindle positioning	physical	1	1	1	Affinity Capture-RNA
EOS1	YNL080C	Protein involved in N-glycosylation	physical	1	1	1	Affinity Capture-RNA
RPL41B	YDL133C-A	Ribosomal 60S subunit protein L41B	physical	1	1	1	Affinity Capture-RNA
RPB7	YDR404C	RNA polymerase II subunit B16	physical	1	1	1	Affinity Capture-RNA
SWC3	YAL011W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YIP5	YGL161C	Protein that interacts with Rab GTPases	physical	1	1	1	Affinity Capture-RNA
TYW3	YGL050W	tRNA methyltransferase required for synthesis of wybutosine	physical	1	1	1	Affinity Capture-RNA
UTP4	YDR324C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	1	1	1	Affinity Capture-RNA
MGM101	YJR144W	Protein with a role in mitochondrial DNA recombinational repair	physical	1	1	1	Affinity Capture-RNA
ENP1	YBR247C	Protein associated with U3 and U14 snoRNAs	physical	1	1	1	Affinity Capture-RNA
FPS1	YLL043W	Aquaglyceroporin, plasma membrane channel	physical	1	1	1	Affinity Capture-RNA
ORM1	YGR038W	Protein that mediates sphingolipid homeostasis	physical	1	1	1	Affinity Capture-RNA
HSL7	YBR133C	Protein arginine N-methyltransferase	physical	1	1	1	Affinity Capture-RNA
RRP8	YDR083W	Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
SPT15	YER148W	TATA-binding protein (TBP)	physical	1	1	1	Affinity Capture-RNA
PTC3	YBL056W	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-RNA
ERP3	YDL018C	Protein with similarity to Emp24p and Erv25p	physical	1	1	1	Affinity Capture-RNA
YDC1	YPL087W	Alkaline dihydroceramidase, involved in sphingolipid metabolism	physical	1	1	1	Affinity Capture-RNA
TAH18	YPR048W	Conserved NAPDH-dependent diflavin reductase	physical	1	1	1	Affinity Capture-RNA
PGA3	YML125C	Putative cytochrome b5 reductase, localized to the plasma membrane	physical	1	1	1	Affinity Capture-RNA
MRP21	YBL090W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
OM45	YIL136W	Mitochondrial outer membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RFC5	YBR087W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Affinity Capture-RNA
PEX4	YGR133W	Peroxisomal ubiquitin conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
RSE1	YML049C	Protein involved in pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
PYK2	YOR347C	Pyruvate kinase	physical	1	1	1	Affinity Capture-RNA
PNO1	YOR145C	Essential nucleolar protein required for pre-18S rRNA processing	physical	1	1	1	Affinity Capture-RNA
UBP9	YER098W	Ubiquitin-specific protease that cleaves ubiquitin-protein fusions	physical	1	1	1	Affinity Capture-RNA
MCH4	YOL119C	Protein with similarity to mammalian monocarboxylate permeases	physical	1	1	1	Affinity Capture-RNA
FZF1	YGL254W	Transcription factor involved in sulfite metabolism	physical	1	1	1	Affinity Capture-RNA
RIM21	YNL294C	pH sensor molecule, component of the RIM101 pathway	physical	1	1	1	Affinity Capture-RNA
URK1	YNR012W	Uridine/cytidine kinase	physical	1	1	1	Affinity Capture-RNA
QCR2	YPR191W	Subunit 2 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Affinity Capture-RNA
MRPL23	YOR150W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
FKH1	YIL131C	Forkhead family transcription factor	physical	1	1	1	Affinity Capture-RNA
YOR283W	YOR283W	Phosphatase with a broad substrate specificity	physical	1	1	1	Affinity Capture-RNA
YPK2	YMR104C	AGC-type S/T protein kinase	physical	1	1	1	Affinity Capture-RNA
EAR1	YMR171C	Specificity factor required for Rsp5p-dependent ubiquitination	physical	1	1	1	Affinity Capture-RNA
PIN3	YPR154W	Negative regulator of actin nucleation-promoting factor activity	physical	1	1	1	Affinity Capture-RNA
IRC21	YMR073C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRM2	YGL136C	Mitochondrial 2' O-ribose methyltransferase	physical	1	1	1	Affinity Capture-RNA
LCB3	YJL134W	Long-chain base-1-phosphate phosphatase	physical	1	1	1	Affinity Capture-RNA
ESL1	YIL151C	hEST1A/B (SMG5/6)-like protein	physical	1	1	1	Affinity Capture-RNA
TOF1	YNL273W	Subunit of a replication-pausing checkpoint complex	physical	1	1	1	Affinity Capture-RNA
MPE1	YKL059C	Subunit of CPF cleavage and polyadenylation factor and E3 Ub-ligase	physical	1	1	1	Affinity Capture-RNA
GPM3	YOL056W	Nonfunctional homolog of Gpm1p phosphoglycerate mutase	physical	1	1	1	Affinity Capture-RNA
HOS4	YIL112W	Subunit of the Set3 complex	physical	1	1	1	Affinity Capture-RNA
GBP2	YCL011C	Poly(A+) RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
YCR043C	YCR043C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
POR2	YIL114C	Putative mitochondrial porin (voltage-dependent anion channel)	physical	1	1	1	Affinity Capture-RNA
UPC2	YDR213W	Sterol regulatory element binding protein	physical	1	1	1	Affinity Capture-RNA
NPR2	YEL062W	Subunit of the Iml1p/SEACIT complex	physical	1	1	1	Affinity Capture-RNA
RRN7	YJL025W	Component of the core factor (CF) rDNA transcription factor complex	physical	1	1	1	Affinity Capture-RNA
RML2	YEL050C	Mitochondrial ribosomal protein of the large subunit (L2)	physical	1	1	1	Affinity Capture-RNA
PAM1	YDR251W	Essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RSM25	YIL093C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
WSC2	YNL283C	Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway	physical	1	1	1	Affinity Capture-RNA
MSS11	YMR164C	Transcription factor	physical	1	1	1	Affinity Capture-RNA
SWI5	YDR146C	Transcription factor that recruits Mediator and Swi/Snf complexes	physical	1	1	1	Affinity Capture-RNA
MPM1	YJL066C	Mitochondrial intermembrane space protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YCS4	YLR272C	Subunit of the condensin complex	physical	1	1	1	Affinity Capture-RNA
MRP7	YNL005C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
PUS9	YDL036C	Mitochondrial tRNA:pseudouridine synthase	physical	1	1	1	Affinity Capture-RNA
EFM2	YBR271W	S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
TAF11	YML015C	TFIID subunit (40 kDa)	physical	1	1	1	Affinity Capture-RNA
TMN3	YER113C	Protein with a role in cellular adhesion and filamentous growth	physical	1	1	1	Affinity Capture-RNA
UBA4	YHR111W	E1-like protein that activates Urm1p before urmylation	physical	1	1	1	Affinity Capture-RNA
ISA1	YLL027W	Protein required for maturation of mitochondrial [4Fe-4S] proteins	physical	1	1	1	Affinity Capture-RNA
SYG1	YIL047C	Plasma membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DSD1	YGL196W	D-serine dehydratase (aka D-serine ammonia-lyase)	physical	1	1	1	Affinity Capture-RNA
GMC1	YDR506C	Protein involved in meiotic progression	physical	1	1	1	Affinity Capture-RNA
ZRT1	YGL255W	High-affinity zinc transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
EXP1	YDL121C	A cargo receptor protein for Pma1p	physical	1	1	1	Affinity Capture-RNA
RNH202	YDR279W	Ribonuclease H2 subunit	physical	1	1	1	Affinity Capture-RNA
SFH5	YJL145W	Unusual phosphatidylinositol transfer protein (PITP) that binds heme	physical	1	1	1	Affinity Capture-RNA
RGC1	YPR115W	Putative regulator of the Fps1p glycerol channel	physical	1	1	1	Affinity Capture-RNA
NAT3	YPR131C	Catalytic subunit of the NatB N-terminal acetyltransferase	physical	1	1	1	Affinity Capture-RNA
EAF3	YPR023C	Component of the Rpd3S histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
ERV2	YPR037C	Flavin-linked sulfhydryl oxidase localized to the ER lumen	physical	1	1	1	Affinity Capture-RNA
PRI1	YIR008C	Subunit of DNA primase	physical	1	1	1	Affinity Capture-RNA
STE20	YHL007C	Cdc42p-activated signal transducing kinase	physical	1	1	1	Affinity Capture-RNA
ROM1	YGR070W	Guanine nucleotide exchange factor (GEF) for Rho1p	physical	1	1	1	Affinity Capture-RNA
SMF1	YOL122C	Divalent metal ion transporter	physical	1	1	1	Affinity Capture-RNA
YIH1	YCR059C	Negative regulator of eIF2 kinase Gcn2p	physical	1	1	1	Affinity Capture-RNA
YLR257W	YLR257W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MNN11	YJL183W	Subunit of a Golgi mannosyltransferase complex	physical	1	1	1	Affinity Capture-RNA
PRR1	YKL116C	Serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
NUP53	YMR153W	FG-nucleoporin component of central core of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-RNA
RAD1	YPL022W	Single-stranded DNA endonuclease (with Rad10p)	physical	1	1	1	Affinity Capture-RNA
TWF1	YGR080W	Twinfilin	physical	1	1	1	Affinity Capture-RNA
YTH1	YPR107C	Essential RNA-binding component of cleavage and polyadenylation factor	physical	1	1	1	Affinity Capture-RNA
SMC1	YFL008W	Subunit of the multiprotein cohesin complex	physical	1	1	1	Affinity Capture-RNA
YAK1	YJL141C	Serine-threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
SNU66	YOR308C	Component of the U4/U6.U5 snRNP complex	physical	1	1	1	Affinity Capture-RNA
SWT21	YNL187W	Protein involved in mRNA splicing	physical	1	1	1	Affinity Capture-RNA
SPT23	YKL020C	ER membrane protein involved in regulation of OLE1 transcription	physical	1	1	1	Affinity Capture-RNA
MSL5	YLR116W	Component of commitment complex	physical	1	1	1	Affinity Capture-RNA
SKG1	YKR100C	Transmembrane protein with a role in cell wall polymer composition	physical	1	1	1	Affinity Capture-RNA
SIT4	YDL047W	Ceramide-activated, type 2A-related serine-threonine phosphatase	physical	1	1	1	Affinity Capture-RNA
RGA1	YOR127W	GTPase-activating protein for polarity-regulator Cdc42p (RhoGAP)	physical	1	1	1	Affinity Capture-RNA
FMP40	YPL222W	Mitochondrial AMPylator in the pseudokinase selenoprotein-O family	physical	1	1	1	Affinity Capture-RNA
GPB1	YOR371C	Multistep regulator of cAMP-PKA signaling	physical	1	1	1	Affinity Capture-RNA
SOL1	YNR034W	Protein with a possible role in tRNA export	physical	1	1	1	Affinity Capture-RNA
YIL001W	YIL001W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MTQ2	YDR140W	S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
MRPL16	YBL038W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MET1	YKR069W	S-adenosyl-L-methionine uroporphyrinogen III transmethylase	physical	1	1	1	Affinity Capture-RNA
PTC6	YCR079W	Mitochondrial type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-RNA
ICP55	YER078C	Mitochondrial aminopeptidase	physical	1	1	1	Affinity Capture-RNA
SEC8	YPR055W	Essential 121 kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-RNA
VPS4	YPR173C	AAA-ATPase involved in multivesicular body (MVB) protein sorting	physical	1	1	1	Affinity Capture-RNA
VPS4	YPR173C	AAA-ATPase involved in multivesicular body (MVB) protein sorting	genetic	1	1	1	Synthetic Lethality
NFU1	YKL040C	Protein involved in Fe-S cluster transfer to mitochondrial clients	physical	1	1	1	Affinity Capture-RNA
PEX2	YJL210W	RING-finger peroxin and E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
SLD7	YOR060C	Protein with a role in chromosomal DNA replication	physical	1	1	1	Affinity Capture-RNA
NBA1	YOL070C	Protein involved in axial bud site selection	physical	1	1	1	Affinity Capture-RNA
GEM1	YAL048C	Outer mitochondrial membrane GTPase, subunit of the ERMES complex	physical	1	1	1	Affinity Capture-RNA
SFL1	YOR140W	Transcriptional repressor and activator	physical	1	1	1	Affinity Capture-RNA
SSA4	YER103W	Heat shock protein that is highly induced upon stress	physical	1	1	1	Affinity Capture-RNA
FAU1	YER183C	5,10-methenyltetrahydrofolate synthetase	physical	1	1	1	Affinity Capture-RNA
SPC72	YAL047C	Gamma-tubulin small complex (gamma-TuSC) receptor	physical	1	1	1	Affinity Capture-RNA
MRPS9	YBR146W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
NEM1	YHR004C	Probable catalytic subunit of Nem1p-Spo7p phosphatase holoenzyme	physical	1	1	1	Affinity Capture-RNA
MSE1	YOL033W	Mitochondrial glutamyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
MPS1	YDL028C	Dual-specificity kinase	physical	1	1	1	Affinity Capture-RNA
DYN1	YKR054C	Cytoplasmic heavy chain dynein	physical	1	1	1	Affinity Capture-RNA
MDG1	YNL173C	Plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
VTC5	YDR089W	Novel subunit of the vacuolar transporter chaperone complex	physical	1	1	1	Affinity Capture-RNA
RPC19	YNL113W	RNA polymerase subunit AC19	physical	1	1	1	Affinity Capture-RNA
FTH1	YBR207W	Putative high affinity iron transporter	physical	1	1	1	Affinity Capture-RNA
LEU3	YLR451W	Zinc-knuckle transcription factor, repressor and activator	physical	1	1	1	Affinity Capture-RNA
MBA1	YBR185C	Membrane-associated mitochondrial ribosome receptor	physical	1	1	1	Affinity Capture-RNA
OMA1	YKR087C	Metalloendopeptidase of the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
TOM22	YNL131W	Component of the TOM (Translocase of Outer Membrane) complex	physical	1	1	1	Affinity Capture-RNA
PRP42	YDR235W	U1 snRNP protein involved in splicing	physical	1	1	1	Affinity Capture-RNA
NSL1	YPL233W	Essential component of the MIND kinetochore complex	physical	1	1	1	Affinity Capture-RNA
RSA3	YLR221C	Protein with a likely role in ribosomal maturation	physical	1	1	1	Affinity Capture-RNA
RRD2	YPL152W	Peptidyl-prolyl cis/trans-isomerase	physical	1	1	1	Affinity Capture-RNA
YTA12	YMR089C	Mitochondrial inner membrane m-AAA protease component	physical	1	1	1	Affinity Capture-RNA
YUR1	YJL139C	Mannosyltransferase involved in protein N-glycosylation	physical	1	1	1	Affinity Capture-RNA
ILM1	YJR118C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
HMT1	YBR034C	Nuclear SAM-dependent mono- and asymmetric methyltransferase	physical	1	1	1	Affinity Capture-RNA
HMT1	YBR034C	Nuclear SAM-dependent mono- and asymmetric methyltransferase	genetic	1	1	1	Dosage Growth Defect
PEX8	YGR077C	Intraperoxisomal organizer of the peroxisomal import machinery	physical	1	1	1	Affinity Capture-RNA
MRS1	YIR021W	Splicing protein	physical	1	1	1	Affinity Capture-RNA
KCC4	YCL024W	Protein kinase of the bud neck involved in the septin checkpoint	physical	1	1	1	Affinity Capture-RNA
YDL086W	YDL086W	Putative carboxymethylenebutenolidase	physical	1	1	1	Affinity Capture-RNA
NIP7	YPL211W	Nucleolar protein required for 60S ribosome subunit biogenesis	physical	1	1	1	Affinity Capture-RNA
RGP1	YDR137W	Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p)	physical	1	1	1	Affinity Capture-RNA
HPC2	YBR215W	Subunit of the HIR complex	physical	1	1	1	Affinity Capture-RNA
PSY4	YBL046W	Regulatory subunit of protein phosphatase PP4	physical	1	1	1	Affinity Capture-RNA
UBP1	YDL122W	Ubiquitin-specific protease	physical	1	1	1	Affinity Capture-RNA
SIR1	YKR101W	Protein involved in silencing at mating-type loci HML and HMR	physical	1	1	1	Affinity Capture-RNA
RIX7	YLL034C	Putative ATPase of the AAA family	physical	1	1	1	Affinity Capture-RNA
HSF1	YGL073W	Trimeric heat shock transcription factor	physical	1	1	1	Affinity Capture-RNA
GPN2	YOR262W	Putative GTPase with a specific role in RNA pol II and polIII biogenes	physical	1	1	1	Affinity Capture-RNA
MRPL22	YNL177C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MDY2	YOL111C	Protein involved in inserting tail-anchored proteins into ER membranes	physical	1	1	1	Affinity Capture-RNA
SAP185	YJL098W	Protein that forms a complex with the Sit4p protein phosphatase	physical	1	1	1	Affinity Capture-RNA
RRI1	YDL216C	Catalytic subunit of the COP9 signalosome (CSN) complex	physical	1	1	1	Affinity Capture-RNA
IMO32	YGR031W	Conserved mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MDM10	YAL010C	Subunit of both the ERMES and the SAM complex	physical	1	1	1	Affinity Capture-RNA
PRP16	YKR086W	DEAH-box RNA helicase	physical	1	1	1	Affinity Capture-RNA
MET31	YPL038W	Zinc-finger DNA-binding transcription factor	physical	1	1	1	Affinity Capture-RNA
MSK1	YNL073W	Mitochondrial lysine-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
PUL4	YNR063W	Putative zinc-cluster transcription factor	physical	1	1	1	Affinity Capture-RNA
PRP6	YBR055C	Splicing factor	physical	1	1	1	Affinity Capture-RNA
RPA43	YOR340C	RNA polymerase I subunit A43	physical	1	1	1	Affinity Capture-RNA
THP1	YOL072W	Nuclear pore-associated protein	physical	1	1	1	Affinity Capture-RNA
SLY41	YOR307C	Protein involved in ER-to-Golgi transport	physical	1	1	1	Affinity Capture-RNA
PRM9	YAR031W	Pheromone-regulated protein	physical	1	1	1	Affinity Capture-RNA
SET2	YJL168C	Histone methyltransferase with a role in transcriptional elongation	physical	1	1	1	Affinity Capture-RNA
GPH1	YPR160W	Glycogen phosphorylase required for the mobilization of glycogen	physical	1	1	1	Affinity Capture-RNA
SKI3	YPR189W	Ski complex component and TPR protein	physical	1	1	1	Affinity Capture-RNA
RIP1	YEL024W	Ubiquinol-cytochrome-c reductase	physical	1	1	1	Affinity Capture-RNA
PKP1	YIL042C	Mitochondrial protein kinase	physical	1	1	1	Affinity Capture-RNA
PKR1	YMR123W	V-ATPase assembly factor	physical	1	1	1	Affinity Capture-RNA
UCC1	YLR224W	F-box protein and component of SCF ubiquitin ligase complexes	physical	1	1	1	Affinity Capture-RNA
EFM1	YHL039W	Lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
SNA4	YDL123W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LUC7	YDL087C	Essential protein associated with the U1 snRNP complex	physical	1	1	1	Affinity Capture-RNA
PWP1	YLR196W	Protein with WD-40 repeats involved in rRNA processing	physical	1	1	1	Affinity Capture-RNA
FAP7	YDL166C	Essential NTPase required for small ribosome subunit synthesis	physical	1	1	1	Affinity Capture-RNA
RAD61	YDR014W	Subunit of a complex that inhibits sister chromatid cohesion	physical	1	1	1	Affinity Capture-RNA
YGK3	YOL128C	Protein kinase related to mammalian GSK-3 glycogen synthase kinases	physical	1	1	1	Affinity Capture-RNA
EXO5	YBR163W	Mitochondrial 5'-3' exonuclease and sliding exonuclease	physical	1	1	1	Affinity Capture-RNA
MDM1	YML104C	PtdIns-3-P binding protein that tethers the ER to vacuoles at NVJs	physical	1	1	1	Affinity Capture-RNA
YGK1	YGL101W	5'-deoxynucleotidase	physical	1	1	1	Affinity Capture-RNA
UBP11	YKR098C	Ubiquitin-specific protease	physical	1	1	1	Affinity Capture-RNA
XRS2	YDR369C	FHA domain-containing component of the Mre11 complex	physical	1	1	1	Affinity Capture-RNA
STP22	YCL008C	Component of the ESCRT-I complex	physical	1	1	1	Affinity Capture-RNA
DIF1	YLR437C	Protein that regulates nuclear import of Rnr2p and Rnr4p	physical	1	1	1	Affinity Capture-RNA
RPN8	YOR261C	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	1	1	1	Affinity Capture-RNA
MKK1	YOR231W	MAPKK involved in the protein kinase C signaling pathway	physical	1	1	1	Affinity Capture-RNA
DMA1	YHR115C	Ubiquitin-protein ligase (E3)	physical	1	1	1	Affinity Capture-RNA
SAM50	YNL026W	Component of the Sorting and Assembly Machinery (SAM) complex	physical	1	1	1	Affinity Capture-RNA
RSA1	YPL193W	Protein involved in the assembly of 60S ribosomal subunits	physical	1	1	1	Affinity Capture-RNA
RAD55	YDR076W	Protein that stimulates strand exchange	physical	1	1	1	Affinity Capture-RNA
PEA2	YER149C	Coiled-coil 12S polarisome subunit	physical	1	1	1	Affinity Capture-RNA
GPA1	YHR005C	Subunit of G protein involved in pheromone response	physical	1	1	1	Affinity Capture-RNA
GTR1	YML121W	Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex	physical	1	1	1	Affinity Capture-RNA
FOB1	YDR110W	Nucleolar protein that binds the rDNA replication fork barrier site	genetic	1	1	1	Phenotypic Suppression
SEC6	YIL068C	Essential 88kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-RNA
TRM10	YOL093W	tRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
NMA2	YGR010W	Nicotinic acid mononucleotide adenylyltransferase	physical	1	1	1	Affinity Capture-RNA
SEC22	YLR268W	R-SNARE protein	physical	1	1	1	Affinity Capture-RNA
YJR098C	YJR098C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPC17	YJL011C	RNA polymerase III subunit C17	physical	1	1	1	Affinity Capture-RNA
MCK1	YNL307C	Dual-specificity ser/thr and tyrosine protein kinase	physical	1	1	1	Affinity Capture-RNA
UBX7	YBR273C	UBX (ubiquitin regulatory X) domain-containing protein	physical	1	1	1	Affinity Capture-RNA
RPC31	YNL151C	RNA polymerase III subunit C31	physical	1	1	1	Affinity Capture-RNA
SYF1	YDR416W	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
HSV2	YGR223C	Phosphatidylinositol 3,5-bisphosphate-binding protein	physical	1	1	1	Affinity Capture-RNA
KTR6	YPL053C	Probable mannosylphosphate transferase	physical	1	1	1	Affinity Capture-RNA
ESBP6	YNL125C	Protein with similarity to monocarboxylate permeases	physical	1	1	1	Affinity Capture-RNA
IDS2	YJL146W	Protein involved in modulation of Ime2p activity during meiosis	physical	1	1	1	Affinity Capture-RNA
YML096W	YML096W	Putative protein with similarity to asparagine synthetases	physical	1	1	1	Affinity Capture-RNA
RRM3	YHR031C	DNA helicase involved in rDNA replication and Ty1 transposition	physical	1	1	1	Affinity Capture-RNA
PAH1	YMR165C	Mg2+-dependent phosphatidate (PA) phosphatase	physical	1	1	1	Affinity Capture-RNA
PMD1	YER132C	Protein with an N-terminal kelch-like domain	physical	1	1	1	Affinity Capture-RNA
SDS3	YIL084C	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
TFB6	YOR352W	Subunit of TFIIH complex	physical	1	1	1	Affinity Capture-RNA
HRD1	YOL013C	Ubiquitin-protein ligase involved in ER-associated degradation (ERAD)	physical	1	1	1	Affinity Capture-RNA
HFI1	YPL254W	Adaptor protein required for structural integrity of the SAGA complex	physical	1	1	1	Affinity Capture-RNA
YCG1	YDR325W	Subunit of the condensin complex	physical	1	1	1	Affinity Capture-RNA
REB1	YBR049C	RNA polymerase I enhancer binding protein	physical	1	1	1	Affinity Capture-RNA
VHS1	YDR247W	Cytoplasmic serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
GAR1	YHR089C	Protein component of the H/ACA snoRNP pseudouridylase complex	physical	1	1	1	Affinity Capture-RNA
YMR155W	YMR155W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SFH1	YLR321C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
PEX27	YOR193W	Peripheral peroxisomal membrane protein	physical	1	1	1	Affinity Capture-RNA
RKM3	YBR030W	Ribosomal lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
UBP13	YBL067C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-RNA
NRP1	YDL167C	Putative RNA binding protein of unknown function	physical	1	1	1	Affinity Capture-RNA
EIS1	YMR031C	Component of the eisosome required for proper eisosome assembly	physical	1	1	1	Affinity Capture-RNA
TFB2	YPL122C	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	1	1	1	Affinity Capture-RNA
YDR444W	YDR444W	Putative hydrolase acting on ester bonds	physical	1	1	1	Affinity Capture-RNA
DSS4	YPR017C	Guanine nucleotide dissociation stimulator for Sec4p	physical	1	1	1	Affinity Capture-RNA
TEL2	YGR099W	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
UTP30	YKR060W	Subunit of U3-containing 90S preribosome complex	physical	1	1	1	Affinity Capture-RNA
LMO1	YLL007C	Homolog of mammalian ELMO (Engulfment and celL MOtility)	physical	1	1	1	Affinity Capture-RNA
MLH2	YLR035C	Protein involved in mismatch repair and meiotic recombination	physical	1	1	1	Affinity Capture-RNA
RRN10	YBL025W	Protein involved in promoting high level transcription of rDNA	physical	1	1	1	Affinity Capture-RNA
YKE4	YIL023C	Zinc transporter	physical	1	1	1	Affinity Capture-RNA
ITR2	YOL103W	Myo-inositol transporter	physical	1	1	1	Affinity Capture-RNA
STP3	YLR375W	Zinc-finger protein of unknown function	physical	1	1	1	Affinity Capture-RNA
IML2	YJL082W	Protein required for clearance of inclusion bodies	physical	1	1	1	Affinity Capture-RNA
IRC25	YLR021W	Component of a heterodimeric Poc4p-Irc25p chaperone	physical	1	1	1	Affinity Capture-RNA
KAR9	YPL269W	Spindle positioning factor	physical	1	1	1	Affinity Capture-RNA
DNF3	YMR162C	Trans-golgi network aminophospholipid translocase (flippase)	physical	1	1	1	Affinity Capture-RNA
SKG3	YLR187W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MUP3	YHL036W	Low affinity methionine permease	physical	1	1	1	Affinity Capture-RNA
MAK3	YPR051W	Catalytic subunit of the NatC type N-terminal acetyltransferase (NAT)	physical	1	1	1	Affinity Capture-RNA
NUP42	YDR192C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-RNA
NUP42	YDR192C	FG-nucleoporin component of central core of the nuclear pore complex	genetic	1	1	1	Dosage Rescue
MNT3	YIL014W	Alpha-1,3-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
TRM44	YPL030W	tRNA(Ser) Um(44) 2'-O-methyltransferase	physical	1	1	1	Affinity Capture-RNA
GIM3	YNL153C	Subunit of the heterohexameric cochaperone prefoldin complex	physical	1	1	1	Affinity Capture-RNA
SET1	YHR119W	Histone methyltransferase, subunit of the COMPASS (Set1C) complex	physical	1	1	1	Affinity Capture-RNA
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	genetic	1	1	1	Phenotypic Suppression
PPR1	YLR014C	Zinc finger transcription factor	physical	1	1	1	Affinity Capture-RNA
MTC2	YKL098W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MVP1	YMR004W	Protein required for sorting proteins to the vacuole	physical	1	1	1	Affinity Capture-RNA
SGS1	YMR190C	RecQ family nucleolar DNA helicase	physical	1	1	1	Affinity Capture-RNA
MIC26	YGR235C	Component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	physical	1	1	1	Affinity Capture-RNA
PEX25	YPL112C	Peripheral peroxisomal membrane peroxin	physical	1	1	1	Affinity Capture-RNA
SRC1	YML034W	Inner nuclear membrane protein	physical	1	1	1	Affinity Capture-RNA
PSK2	YOL045W	PAS-domain containing serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
IWR1	YDL115C	RNA polymerase II transport factor, conserved from yeast to humans	physical	1	1	1	Affinity Capture-RNA
MTC1	YJL123C	Protein of unknown function that may interact with ribosomes	physical	1	1	1	Affinity Capture-RNA
LAM5	YFL042C	Putative sterol transfer protein	physical	1	1	1	Affinity Capture-RNA
RTP1	YMR185W	Protein required for the nuclear import and biogenesis of RNA pol II	physical	1	1	1	Affinity Capture-RNA
SPC98	YNL126W	Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex	physical	1	1	1	Affinity Capture-RNA
SLD5	YDR489W	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	physical	1	1	1	Affinity Capture-RNA
RCR1	YBR005W	Plasma membrane (PM) ubiquitin ligase-substrate adaptor	physical	1	1	1	Affinity Capture-RNA
YDR338C	YDR338C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MCM10	YIL150C	Essential chromatin-associated protein	physical	1	1	1	Affinity Capture-RNA
STP2	YHR006W	Transcription factor	physical	1	1	1	Affinity Capture-RNA
ENT2	YLR206W	Epsin-like protein required for endocytosis and actin patch assembly	physical	1	1	1	Affinity Capture-RNA
SMY1	YKL079W	Kinesin-like myosin passenger-protein	physical	1	1	1	Affinity Capture-RNA
YJL213W	YJL213W	Protein of unknown function that may interact with ribosomes	physical	1	1	1	Affinity Capture-RNA
VTA1	YLR181C	Multivesicular body (MVB) protein	physical	1	1	1	Affinity Capture-RNA
YNL035C	YNL035C	Nuclear protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TFA2	YKR062W	TFIIE small subunit	physical	1	1	1	Affinity Capture-RNA
PRP11	YDL043C	Subunit of the SF3a splicing factor complex	physical	1	1	1	Affinity Capture-RNA
SUR2	YDR297W	Sphinganine C4-hydroxylase	physical	1	1	1	Affinity Capture-RNA
PCL9	YDL179W	Cyclin	physical	1	1	1	Affinity Capture-RNA
ORC6	YHR118C	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Affinity Capture-RNA
MAM3	YOL060C	Protein involved in magnesium homeostasis	physical	1	1	1	Affinity Capture-RNA
YJR142W	YJR142W	8-oxo-dGTP diphosphatase of the Nudix hydrolase family	physical	1	1	1	Affinity Capture-RNA
LAS17	YOR181W	Actin assembly factor	physical	1	1	1	Affinity Capture-RNA
ERS1	YCR075C	Protein involved in cystine transport	physical	1	1	1	Affinity Capture-RNA
RAD53	YPL153C	DNA damage response kinase	physical	1	1	1	Affinity Capture-RNA
RAD53	YPL153C	DNA damage response kinase	genetic	1	1	1	Synthetic Growth Defect
RVS161	YCR009C	Amphiphysin-like lipid raft protein	physical	1	1	1	Affinity Capture-RNA
YHL026C	YHL026C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PET494	YNR045W	Mitochondrial translational activator specific for the COX3 mRNA	physical	1	1	1	Affinity Capture-RNA
SLN1	YIL147C	Transmembrane histidine phosphotransfer kinase and osmosensor	physical	1	1	1	Affinity Capture-RNA
IOC3	YFR013W	Subunit of the Isw1a complex	physical	1	1	1	Affinity Capture-RNA
SMC6	YLR383W	Subunit of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
GCD1	YOR260W	Gamma subunit of the translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-RNA
SPP41	YDR464W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GUT1	YHL032C	Glycerol kinase	physical	1	1	1	Affinity Capture-RNA
YPR096C	YPR096C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPR096C	YPR096C	Protein of unknown function	genetic	1	1	1	Synthetic Growth Defect
SKT5	YBL061C	Activator of Chs3p (chitin synthase III) during vegetative growth	physical	1	1	1	Affinity Capture-RNA
KKQ8	YKL168C	Putative serine/threonine protein kinase with unknown cellular role	physical	1	1	1	Affinity Capture-RNA
FYV8	YGR196C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GRX4	YER174C	Glutathione-dependent oxidoreductase and glutathione S-transferase	physical	1	1	1	Affinity Capture-RNA
ECM2	YBR065C	Pre-mRNA splicing factor	physical	1	1	1	Affinity Capture-RNA
ZIM17	YNL310C	Protein co-chaperone with a zinc finger motif	physical	1	1	1	Affinity Capture-RNA
HDA3	YPR179C	Subunit of HDA1 histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
YTA6	YPL074W	Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family	physical	1	1	1	Affinity Capture-RNA
PEX13	YLR191W	Peroxisomal importomer complex component	physical	1	1	1	Affinity Capture-RNA
ENT1	YDL161W	Epsin-like protein involved in endocytosis and actin patch assembly	physical	1	1	1	Affinity Capture-RNA
TRS31	YDR472W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
MRPL36	YBR122C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	physical	1	1	1	Affinity Capture-RNA
ELG1	YOR144C	Subunit of an alternative replication factor C complex	physical	1	1	1	Affinity Capture-RNA
TDA11	YHR159W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SKP2	YNL311C	F-box protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPD1	YDL235C	Osmotic stress-responsive phosphorelay intermediate sensor protein	physical	1	1	1	Affinity Capture-RNA
SWI4	YER111C	DNA binding component of the SBF complex (Swi4p-Swi6p)	physical	1	1	1	Affinity Capture-RNA
HOT1	YMR172W	Transcription factor for glycerol biosynthetic genes	physical	1	1	1	Affinity Capture-RNA
SUA7	YPR086W	Transcription factor TFIIB	physical	1	1	1	Affinity Capture-RNA
RMD1	YDL001W	Cytoplasmic protein required for sporulation	physical	1	1	1	Affinity Capture-RNA
SIF2	YBR103W	WD40 repeat-containing subunit of Set3C histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
ECM22	YLR228C	Sterol regulatory element binding protein	physical	1	1	1	Affinity Capture-RNA
MRPL33	YMR286W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
PIN4	YBL051C	Protein involved in G2/M phase progression and response to DNA damage	physical	1	1	1	Affinity Capture-RNA
VID27	YNL212W	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
KRI1	YNL308C	Essential nucleolar protein required for 40S ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
SLT2	YHR030C	Serine/threonine MAP kinase	physical	1	1	1	Affinity Capture-RNA
SLT2	YHR030C	Serine/threonine MAP kinase	genetic	1	1	1	Dosage Growth Defect
DUG3	YNL191W	Component of glutamine amidotransferase (GATase II)	physical	1	1	1	Affinity Capture-RNA
TAF1	YGR274C	TFIID subunit, involved in RNA pol II transcription initiation	physical	1	1	1	Affinity Capture-RNA
PEX5	YDR244W	Peroxisomal membrane signal receptor for peroxisomal matrix proteins	physical	1	1	1	Affinity Capture-RNA
TMS1	YDR105C	Vacuolar membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MDM31	YHR194W	Mitochondrial protein that may have a role in phospholipid metabolism	physical	1	1	1	Affinity Capture-RNA
MRPL9	YGR220C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
LTE1	YAL024C	Protein similar to GDP/GTP exchange factors	physical	1	1	1	Affinity Capture-RNA
FCF2	YLR051C	Nucleolar protein involved in the early steps of 35S rRNA processing	physical	1	1	1	Affinity Capture-RNA
NOP16	YER002W	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
TEX1	YNL253W	Protein involved in mRNA export	physical	1	1	1	Affinity Capture-RNA
FOL2	YGR267C	GTP-cyclohydrolase I, catalyzes first step in folic acid biosynthesis	physical	1	1	1	Affinity Capture-RNA
MRP51	YPL118W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
STE12	YHR084W	Transcription factor that is activated by a MAPK signaling cascade	physical	1	1	1	Affinity Capture-RNA
ELP4	YPL101W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	physical	1	1	1	Affinity Capture-RNA
YUH1	YJR099W	Ubiquitin C-terminal hydrolase	physical	1	1	1	Affinity Capture-RNA
TSR2	YLR435W	Protein with a potential role in pre-rRNA processing	physical	1	1	1	Affinity Capture-RNA
RGT2	YDL138W	Plasma membrane high glucose sensor that regulates glucose transport	physical	1	1	1	Affinity Capture-RNA
MSB4	YOL112W	GTPase-activating protein of the Ras superfamily	physical	1	1	1	Affinity Capture-RNA
FAD1	YDL045C	Flavin adenine dinucleotide (FAD) synthetase	physical	1	1	1	Affinity Capture-RNA
TRS33	YOR115C	Core component of TRAPP complexes I, II and IV	physical	1	1	1	Affinity Capture-RNA
PAR32	YDL173W	Low complexity protein	physical	1	1	1	Affinity Capture-RNA
SRO77	YBL106C	Protein with roles in exocytosis and cation homeostasis	physical	1	1	1	Affinity Capture-RNA
DHR2	YKL078W	Predominantly nucleolar DEAH-box ATP-dependent RNA helicase	physical	1	1	1	Affinity Capture-RNA
TGS1	YPL157W	Trimethyl guanosine synthase, conserved nucleolar methyl transferase	physical	1	1	1	Affinity Capture-RNA
GYP1	YOR070C	Cis-golgi GTPase-activating protein (GAP) for yeast Rabs	physical	1	1	1	Affinity Capture-RNA
THI21	YPL258C	Hydroxymethylpyrimidine (HMP) and HMP-phosphate kinase	physical	1	1	1	Affinity Capture-RNA
LAA2	YBL010C	Clathrin adaptor (adaptin) accessory protein	physical	1	1	1	Affinity Capture-RNA
IZH3	YLR023C	Membrane protein involved in zinc ion homeostasis	physical	1	1	1	Affinity Capture-RNA
GGA1	YDR358W	Golgi-localized protein with homology to gamma-adaptin	physical	1	1	1	Affinity Capture-RNA
IZH2	YOL002C	Plasma membrane receptor for plant antifungal osmotin	physical	1	1	1	Affinity Capture-RNA
PLM2	YDR501W	Putative transcription factor, contains Forkhead Associated domain	physical	1	1	1	Affinity Capture-RNA
YAP1801	YHR161C	Protein of the AP180 family, involved in clathrin cage assembly	physical	1	1	1	Affinity Capture-RNA
MEC3	YLR288C	DNA damage and meiotic pachytene checkpoint protein	physical	1	1	1	Affinity Capture-RNA
DPC29	YGR021W	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ULA1	YPL003W	Protein that activates Rub1p (NEDD8) before neddylation	physical	1	1	1	Affinity Capture-RNA
MNN1	YER001W	Alpha-1,3-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
TCA17	YEL048C	Component of transport protein particle (TRAPP) complex II	physical	1	1	1	Affinity Capture-RNA
IML1	YJR138W	GTPase-activating protein (GAP) subunit of the Iml1p/SEACIT complex	physical	1	1	1	Affinity Capture-RNA
UBA3	YPR066W	Protein that activates Rub1p (NEDD8) before neddylation	physical	1	1	1	Affinity Capture-RNA
MAK31	YCR020C-A	Non-catalytic subunit of N-terminal acetyltransferase of the NatC type	physical	1	1	1	Affinity Capture-RNA
ERP6	YGL002W	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
GIP4	YAL031C	Cytoplasmic protein that regulates protein phosphatase 1 Glc7p	physical	1	1	1	Affinity Capture-RNA
NMD4	YLR363C	Protein that may be involved in nonsense-mediated mRNA decay	physical	1	1	1	Affinity Capture-RNA
MRPS8	YMR158W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
REF2	YDR195W	RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
ECM7	YLR443W	Putative integral membrane protein with a role in calcium uptake	physical	1	1	1	Affinity Capture-RNA
HSM3	YBR272C	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	1	1	1	Affinity Capture-RNA
PPZ1	YML016C	Serine/threonine protein phosphatase Z, isoform of Ppz2p	physical	1	1	1	Affinity Capture-RNA
YIL092W	YIL092W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
INA17	YPL099C	F1F0 ATPase synthase peripheral stalk assembly factor	physical	1	1	1	Affinity Capture-RNA
SAM37	YMR060C	Component of the Sorting and Assembly Machinery (SAM) complex	physical	1	1	1	Affinity Capture-RNA
YGR130C	YGR130C	Component of the eisosome with unknown function	physical	1	1	1	Affinity Capture-RNA
NTH2	YBR001C	Putative neutral trehalase, required for thermotolerance	physical	1	1	1	Affinity Capture-RNA
UFD1	YGR048W	Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase	physical	1	1	1	Affinity Capture-RNA
MRX9	YDL027C	Protein that associates with mitochondrial ribosome	physical	1	1	1	Affinity Capture-RNA
MTG1	YMR097C	Putative GTPase peripheral to the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
PFA3	YNL326C	Palmitoyltransferase for Vac8p	physical	1	1	1	Affinity Capture-RNA
TTI1	YKL033W	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
ROM2	YLR371W	Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p	genetic	1	1	1	Synthetic Lethality
YML020W	YML020W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DMA2	YNL116W	Ubiquitin-protein ligase (E3)	physical	1	1	1	Affinity Capture-RNA
HUA1	YGR268C	Cytoplasmic protein containing a zinc finger domain	physical	1	1	1	Affinity Capture-RNA
GLG2	YJL137C	Glycogenin glucosyltransferase	physical	1	1	1	Affinity Capture-RNA
ICE2	YIL090W	Integral ER membrane protein with type-III transmembrane domains	physical	1	1	1	Affinity Capture-RNA
PRP21	YJL203W	Subunit of the SF3a splicing factor complex	physical	1	1	1	Affinity Capture-RNA
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	physical	1	1	1	Affinity Capture-RNA
MRPL28	YDR462W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
DUF1	YOL087C	Ubiquitin-binding protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SGN1	YIR001C	Cytoplasmic RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
ULP2	YIL031W	Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins	physical	1	1	1	Affinity Capture-RNA
PEX7	YDR142C	Peroxisomal signal receptor for peroxisomal matrix proteins	physical	1	1	1	Affinity Capture-RNA
YPR089W	YPR089W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MIC60	YKR016W	Component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
PEX31	YGR004W	Peroxisomal integral membrane protein	physical	1	1	1	Affinity Capture-RNA
LAG2	YOL025W	Protein that negatively regulates the SCF E3-ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
PAN6	YIL145C	Pantothenate synthase	physical	1	1	1	Affinity Capture-RNA
TDA7	YNL176C	Cell cycle-regulated gene of unknown function	physical	1	1	1	Affinity Capture-RNA
RMI1	YPL024W	Subunit of the RecQ (Sgs1p) - Topo III (Top3p) complex	physical	1	1	1	Affinity Capture-RNA
YHR033W	YHR033W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PFA5	YDR459C	Palmitoyltransferase with autoacylation activity	physical	1	1	1	Affinity Capture-RNA
PSF2	YJL072C	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	physical	1	1	1	Affinity Capture-RNA
SIP5	YMR140W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
INP2	YMR163C	Peroxisome-specific receptor important for peroxisome inheritance	physical	1	1	1	Affinity Capture-RNA
YEA4	YEL004W	Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter	physical	1	1	1	Affinity Capture-RNA
YDR109C	YDR109C	D-ribulokinase	physical	1	1	1	Affinity Capture-RNA
RAD52	YML032C	Protein involved in homologous recombination	physical	1	1	1	Affinity Capture-RNA
FMN1	YDR236C	Riboflavin kinase, produces riboflavin monophosphate (FMN)	physical	1	1	1	Affinity Capture-RNA
SEC2	YNL272C	Guanyl-nucleotide exchange factor for the small G-protein Sec4p	physical	1	1	1	Affinity Capture-RNA
YIP4	YGL198W	Protein that interacts with Rab GTPases	physical	1	1	1	Affinity Capture-RNA
YGR122W	YGR122W	Protein that may be involved in pH regulation	physical	1	1	1	Affinity Capture-RNA
SSF2	YDR312W	Protein required for ribosomal large subunit maturation	physical	1	1	1	Affinity Capture-RNA
RPC53	YDL150W	RNA polymerase III subunit C53	physical	1	1	1	Affinity Capture-RNA
RXT3	YDL076C	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
PEX32	YBR168W	Peroxisomal integral membrane protein	physical	1	1	1	Affinity Capture-RNA
FCY22	YER060W-A	Putative purine-cytosine permease	physical	1	1	1	Affinity Capture-RNA
EPO1	YMR124W	Protein involved in septin-ER tethering	physical	1	1	1	Affinity Capture-RNA
RGR1	YLR071C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
RUD3	YOR216C	Golgi matrix protein	physical	1	1	1	Affinity Capture-RNA
MRPL8	YJL063C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
INP54	YOL065C	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase	physical	1	1	1	Affinity Capture-RNA
GRX6	YDL010W	Cis-Golgi localized monothiol glutaredoxin, binds Fe-S cluster	physical	1	1	1	Affinity Capture-RNA
ECM1	YAL059W	Pre-ribosomal factor involved in 60S ribosomal protein subunit export	physical	1	1	1	Affinity Capture-RNA
MRPL7	YDR237W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
VPS51	YKR020W	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-RNA
MHR1	YDR296W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
SIS2	YKR072C	Negative regulatory subunit of protein phosphatase 1 (Ppz1p)	physical	1	1	1	Affinity Capture-RNA
TOP1	YOL006C	Topoisomerase I	physical	1	1	1	Affinity Capture-RNA
ENT5	YDR153C	Protein containing an N-terminal epsin-like domain	physical	1	1	1	Affinity Capture-RNA
FAL1	YDR021W	Nucleolar protein required for maturation of 18S rRNA	physical	1	1	1	Affinity Capture-RNA
SUR1	YPL057C	Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit	physical	1	1	1	Affinity Capture-RNA
LDB16	YCL005W	Protein involved in lipid droplet (LD) assembly	physical	1	1	1	Affinity Capture-RNA
TIM13	YGR181W	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
RPA34	YJL148W	RNA polymerase I subunit A34.5	physical	1	1	1	Affinity Capture-RNA
RPC25	YKL144C	RNA polymerase III subunit C25	physical	1	1	1	Affinity Capture-RNA
ENV9	YOR246C	Conserved oxidoreductase involved in lipid droplet morphology	physical	1	1	1	Affinity Capture-RNA
MIP1	YOR330C	Mitochondrial DNA polymerase gamma	physical	1	1	1	Affinity Capture-RNA
YDR541C	YDR541C	Aldehyde reductase	physical	1	1	1	Affinity Capture-RNA
MTF1	YMR228W	Mitochondrial RNA polymerase specificity factor	physical	1	1	1	Affinity Capture-RNA
SPC2	YML055W	Subunit of signal peptidase complex	physical	1	1	1	Affinity Capture-RNA
SPG3	YDR504C	Protein required for high temperature survival during stationary phase	physical	1	1	1	Affinity Capture-RNA
MMR1	YLR190W	Phosphorylated protein of the mitochondrial outer membrane	physical	1	1	1	Affinity Capture-RNA
YBR242W	YBR242W	5'-deoxynucleotidase involved in deoxyribonucleoside monophosphate deg	physical	1	1	1	Affinity Capture-RNA
TFG1	YGR186W	TFIIF (Transcription Factor II) largest subunit	physical	1	1	1	Affinity Capture-RNA
YPT11	YNL304W	Rab GTPase	physical	1	1	1	Affinity Capture-RNA
LEA1	YPL213W	Component of U2 snRNP complex	physical	1	1	1	Affinity Capture-RNA
ORC5	YNL261W	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Affinity Capture-RNA
FLX1	YIL134W	Mitochondrial flavin adenine dinucleotide transporter	physical	1	1	1	Affinity Capture-RNA
LCB5	YLR260W	Minor sphingoid long-chain base kinase	physical	1	1	1	Affinity Capture-RNA
YDR514C	YDR514C	Protein of unknown function that localizes to mitochondria	physical	1	1	1	Affinity Capture-RNA
VPH2	YKL119C	Integral membrane protein required for V-ATPase function	physical	1	1	1	Affinity Capture-RNA
EMP65	YER140W	Integral membrane protein of the ER	physical	1	1	1	Affinity Capture-RNA
KTR7	YIL085C	Putative mannosyltransferase involved in protein glycosylation	physical	1	1	1	Affinity Capture-RNA
SAS10	YDL153C	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	1	1	1	Affinity Capture-RNA
ZRT2	YLR130C	Low-affinity zinc transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
YPR071W	YPR071W	Putative membrane protein	physical	1	1	1	Affinity Capture-RNA
VPS52	YDR484W	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-RNA
YBP2	YGL060W	Central kinetochore associated protein	physical	1	1	1	Affinity Capture-RNA
MSA1	YOR066W	Activator of G1-specific transcription factors MBF and SBF	physical	1	1	1	Affinity Capture-RNA
SWE1	YJL187C	Protein kinase that regulates the G2/M transition	physical	1	1	1	Affinity Capture-RNA
MET2	YNL277W	L-homoserine-O-acetyltransferase	physical	1	1	1	Affinity Capture-RNA
TOM6	YOR045W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
MRP35	YNL122C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
FAR1	YJL157C	CDK inhibitor and nuclear anchor	physical	1	1	1	Affinity Capture-RNA
UTP14	YML093W	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	1	1	1	Affinity Capture-RNA
MSB1	YOR188W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PSR2	YLR019W	Putative plasma membrane phosphatase	physical	1	1	1	Affinity Capture-RNA
YER076C	YER076C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SSU72	YNL222W	Phosphatase and transcription/RNA-processing factor	physical	1	1	1	Affinity Capture-RNA
MRX6	YNL295W	Mitochondrial ribosome-associated protein	physical	1	1	1	Affinity Capture-RNA
NSE3	YDR288W	Component of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
GAT2	YMR136W	Protein containing GATA family zinc finger motifs	physical	1	1	1	Affinity Capture-RNA
ENV7	YPL236C	Vacuolar membrane protein kinase	physical	1	1	1	Affinity Capture-RNA
SPT3	YDR392W	Subunit of the SAGA and SAGA-like transcriptional regulatory complexes	physical	1	1	1	Affinity Capture-RNA
SRB8	YCR081W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
SIR2	YDL042C	Conserved NAD+ dependent histone deacetylase of the Sirtuin family	genetic	1	1	1	Phenotypic Enhancement
RRS1	YOR294W	Essential protein that binds ribosomal protein L11	physical	1	1	1	Affinity Capture-RNA
RNA14	YMR061W	Component of the cleavage and polyadenylation factor I (CF I)	physical	1	1	1	Affinity Capture-RNA
MRP20	YDR405W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
VPS55	YJR044C	Late endosomal protein involved in late endosome to vacuole transport	physical	1	1	1	Affinity Capture-RNA
ORC3	YLL004W	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Affinity Capture-RNA
IES2	YNL215W	Protein that associates with the INO80 chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
NAM9	YNL137C	Mitochondrial ribosomal component of the small subunit	physical	1	1	1	Affinity Capture-RNA
RSF2	YJR127C	Zinc-finger protein	physical	1	1	1	Affinity Capture-RNA
IZH4	YOL101C	Membrane protein involved in zinc ion homeostasis	physical	1	1	1	Affinity Capture-RNA
YPL199C	YPL199C	Protein involved in nonstop mRNA decay	physical	1	1	1	Affinity Capture-RNA
NOP15	YNL110C	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
TCO89	YPL180W	Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p)	physical	1	1	1	Affinity Capture-RNA
PML1	YLR016C	Subunit of the RES complex	physical	1	1	1	Affinity Capture-RNA
YJR011C	YJR011C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNL040W	YNL040W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TAF7	YMR227C	TFIID subunit (67 kDa)	physical	1	1	1	Affinity Capture-RNA
MTL1	YGR023W	Putative plasma membrane sensor	physical	1	1	1	Affinity Capture-RNA
STB1	YNL309W	Protein with role in regulation of MBF-specific transcription at Start	physical	1	1	1	Affinity Capture-RNA
GLC8	YMR311C	Regulatory subunit of protein phosphatase 1 (Glc7p)	physical	1	1	1	Affinity Capture-RNA
SBE22	YHR103W	Protein involved in bud growth	physical	1	1	1	Affinity Capture-RNA
NPP1	YCR026C	Nucleotide pyrophosphatase/phosphodiesterase	physical	1	1	1	Affinity Capture-RNA
MPC2	YHR162W	Highly conserved subunit of the mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Affinity Capture-RNA
NOP8	YOL144W	Nucleolar protein required for 60S ribosomal subunit biogenesis	physical	1	1	1	Affinity Capture-RNA
YRM1	YOR172W	Zinc finger transcription factor involved in multidrug resistance	physical	1	1	1	Affinity Capture-RNA
RCF1	YML030W	Cytochrome c oxidase subunit	physical	1	1	1	Affinity Capture-RNA
SSK1	YLR006C	Cytoplasmic phosphorelay intermediate osmosensor and regulator	physical	1	1	1	Affinity Capture-RNA
SSF1	YHR066W	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
PET111	YMR257C	Mitochondrial translational activator specific for the COX2 mRNA	physical	1	1	1	Affinity Capture-RNA
YHR131C	YHR131C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PET112	YBL080C	Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex	physical	1	1	1	Affinity Capture-RNA
PEF1	YGR058W	Penta-EF-hand protein	physical	1	1	1	Affinity Capture-RNA
NAF1	YNL124W	RNA-binding protein required for the assembly of box H/ACA snoRNPs	physical	1	1	1	Affinity Capture-RNA
SRF1	YDL133W	Regulator of phospholipase D (Spo14p)	physical	1	1	1	Affinity Capture-RNA
LCL3	YGL085W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PSR1	YLL010C	Plasma membrane-associated protein phosphatase	physical	1	1	1	Affinity Capture-RNA
YPT6	YLR262C	Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
IES5	YER092W	Non-essential INO80 chromatin remodeling complex subunit	physical	1	1	1	Affinity Capture-RNA
RRP42	YDL111C	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-RNA
SPT7	YBR081C	Subunit of the SAGA transcriptional regulatory complex	physical	1	1	1	Affinity Capture-RNA
MGS1	YNL218W	Protein with DNA-dependent ATPase and ssDNA annealing activities	physical	1	1	1	Affinity Capture-RNA
MPS2	YGL075C	Essential membrane protein localized at nuclear envelope and SPBs	physical	1	1	1	Affinity Capture-RNA
MPS2	YGL075C	Essential membrane protein localized at nuclear envelope and SPBs	genetic	1	1	1	Synthetic Lethality
MSL1	YIR009W	U2B component of U2 snRNP	physical	1	1	1	Affinity Capture-RNA
YDL109C	YDL109C	Putative lipase	physical	1	1	1	Affinity Capture-RNA
PSO2	YMR137C	Nuclease required for DNA single- and double-strand break repair	physical	1	1	1	Affinity Capture-RNA
KTR4	YBR199W	Glycosyltransferase involved in protein glycosylation	physical	1	1	1	Affinity Capture-RNA
UFO1	YML088W	F-box receptor protein	physical	1	1	1	Affinity Capture-RNA
PCF11	YDR228C	mRNA 3' end processing factor	physical	1	1	1	Affinity Capture-RNA
OSW7	YFR039C	Protein involved in outer spore wall assembly	physical	1	1	1	Affinity Capture-RNA
TFC8	YPL007C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Affinity Capture-RNA
THG1	YGR024C	tRNAHis guanylyltransferase	physical	1	1	1	Affinity Capture-RNA
GZF3	YJL110C	GATA zinc finger protein	physical	1	1	1	Affinity Capture-RNA
GTO1	YGR154C	Omega-class glutathione transferase	physical	1	1	1	Affinity Capture-RNA
MSP1	YGR028W	Highly-conserved N-terminally anchored AAA-ATPase	physical	1	1	1	Affinity Capture-RNA
TAF8	YML114C	TFIID subunit (65 kDa)	physical	1	1	1	Affinity Capture-RNA
YFH7	YFR007W	Putative kinase with similarity to the PRK/URK/PANK kinase subfamily	physical	1	1	1	Affinity Capture-RNA
RSM28	YDR494W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
OPY2	YPR075C	Integral membrane protein that acts as a membrane anchor for Ste50p	physical	1	1	1	Affinity Capture-RNA
MSB3	YNL293W	Rab GTPase-activating protein	physical	1	1	1	Affinity Capture-RNA
MCM21	YDR318W	Component of the kinetochore sub-complex COMA	physical	1	1	1	Affinity Capture-RNA
PDR1	YGL013C	Transcription factor that regulates the pleiotropic drug response	physical	1	1	1	Affinity Capture-RNA
SKO1	YNL167C	Basic leucine zipper transcription factor of the ATF/CREB family	physical	1	1	1	Affinity Capture-RNA
PPT2	YPL148C	Phosphopantetheine:protein transferase (PPTase)	physical	1	1	1	Affinity Capture-RNA
YHR127W	YHR127W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YCT1	YLL055W	High-affinity cysteine-specific transporter	physical	1	1	1	Affinity Capture-RNA
MSW1	YDR268W	Mitochondrial tryptophanyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
SNU56	YDR240C	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-RNA
MRPL35	YDR322W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
TRI1	YMR233W	Non-essential sumoylated protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RDH54	YBR073W	DNA-dependent ATPase	physical	1	1	1	Affinity Capture-RNA
IFH1	YLR223C	Coactivator, regulates transcription of ribosomal protein (RP) genes	physical	1	1	1	Affinity Capture-RNA
MTC4	YBR255W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PIB1	YDR313C	RING-type ubiquitin ligase of the endosomal and vacuolar membranes	physical	1	1	1	Affinity Capture-RNA
SNF7	YLR025W	One of four subunits of the ESCRT-III complex	physical	1	1	1	Affinity Capture-RNA
RSR1	YGR152C	Ras-type GTPase	physical	1	1	1	Affinity Capture-RNA
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	physical	1	1	1	Affinity Capture-RNA
PEP5	YMR231W	Histone E3 ligase, component of CORVET membrane tethering complex	physical	1	1	1	Affinity Capture-RNA
UBS1	YBR165W	Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p	physical	1	1	1	Affinity Capture-RNA
RAD34	YDR314C	Protein involved in nucleotide excision repair (NER)	physical	1	1	1	Affinity Capture-RNA
HTD2	YHR067W	Mitochondrial 3-hydroxyacyl-thioester dehydratase	physical	1	1	1	Affinity Capture-RNA
GPI15	YNL038W	Protein involved in the synthesis of GlcNAc-PI	physical	1	1	1	Affinity Capture-RNA
OAF3	YKR064W	Putative transcriptional repressor with Zn(2)-Cys(6) finger	physical	1	1	1	Affinity Capture-RNA
DYN3	YMR299C	Dynein light intermediate chain (LIC)	physical	1	1	1	Affinity Capture-RNA
GAT1	YFL021W	Transcriptional activator of nitrogen catabolite repression genes	physical	1	1	1	Affinity Capture-RNA
GFD2	YCL036W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RNH1	YMR234W	Ribonuclease H1	physical	1	1	1	Affinity Capture-RNA
LST7	YGR057C	Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p	physical	1	1	1	Affinity Capture-RNA
YPL247C	YPL247C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GEP5	YLR091W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MLC2	YPR188C	Regulatory light chain for the type II myosin Myo1p	physical	1	1	1	Affinity Capture-RNA
MET14	YKL001C	Adenylylsulfate kinase	physical	1	1	1	Affinity Capture-RNA
SWI3	YJL176C	Subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
MRPL19	YNL185C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
ZAP1	YJL056C	Zinc-regulated transcription factor	physical	1	1	1	Affinity Capture-RNA
VMA21	YGR105W	Integral membrane protein required for V-ATPase function	physical	1	1	1	Affinity Capture-RNA
RAM1	YDL090C	Beta subunit of the CAAX farnesyltransferase (FTase)	physical	1	1	1	Affinity Capture-RNA
VBA2	YBR293W	Permease of basic amino acids in the vacuolar membrane	physical	1	1	1	Affinity Capture-RNA
MRPL49	YJL096W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
GNA1	YFL017C	Glucosamine-6-phosphate acetyltransferase	physical	1	1	1	Affinity Capture-RNA
MFG1	YDL233W	Regulator of filamentous growth	physical	1	1	1	Affinity Capture-RNA
IPL1	YPL209C	Aurora kinase of chromosomal passenger complex	physical	1	1	1	Affinity Capture-RNA
MID2	YLR332W	O-glycosylated plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
SSO1	YPL232W	Plasma membrane t-SNARE	physical	1	1	1	Affinity Capture-RNA
YHL017W	YHL017W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RGD2	YFL047W	GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p	physical	1	1	1	Affinity Capture-RNA
PPG1	YNR032W	Serine protein phosphatase involved in formation of FAR complex	physical	1	1	1	Affinity Capture-RNA
PEP7	YDR323C	Adaptor protein involved in vesicle-mediated vacuolar protein sorting	physical	1	1	1	Affinity Capture-RNA
TOM7	YNL070W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
TRM12	YML005W	S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
MPC1	YGL080W	Highly conserved subunit of mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Affinity Capture-RNA
YDR262W	YDR262W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RCE1	YMR274C	Type II CAAX prenyl protease	physical	1	1	1	Affinity Capture-RNA
NRE1	YIR035C	Putative cytoplasmic short-chain dehydrogenase/reductase	physical	1	1	1	Affinity Capture-RNA
LAS1	YKR063C	Endonuclease involved in pre-rRNA processing at both ends of ITS2	physical	1	1	1	Affinity Capture-RNA
YPL034W	YPL034W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PHA2	YNL316C	Prephenate dehydratase	physical	1	1	1	Affinity Capture-RNA
RRG7	YOR305W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TRS85	YDR108W	Component of transport protein particle (TRAPP) complex III	physical	1	1	1	Affinity Capture-RNA
MAG2	YLR427W	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRPS28	YDR337W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
PCT1	YGR202C	Cholinephosphate cytidylyltransferase	physical	1	1	1	Affinity Capture-RNA
PET191	YJR034W	Protein required for assembly of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	physical	1	1	1	Affinity Capture-RNA
RPC10	YHR143W-A	RNA polymerase subunit ABC10-alpha, found in RNA pol I, II, and III	physical	1	1	1	Affinity Capture-RNA
OCA2	YNL056W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VPS30	YPL120W	Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II	physical	1	1	1	Affinity Capture-RNA
SSL1	YLR005W	Subunit of the core form of RNA polymerase transcription factor TFIIH	physical	1	1	1	Affinity Capture-RNA
MIG3	YER028C	Transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
OMS1	YDR316W	Protein integral to the mitochondrial membrane	physical	1	1	1	Affinity Capture-RNA
KXD1	YGL079W	Subunit of the BLOC-1 complex involved in endosomal maturation	physical	1	1	1	Affinity Capture-RNA
LOT5	YKL183W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNL165W	YNL165W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
USB1	YLR132C	Putative poly(U)-specific 3'-to-5' RNA exonuclease	physical	1	1	1	Affinity Capture-RNA
GPI18	YBR004C	Functional ortholog of human PIG-V	physical	1	1	1	Affinity Capture-RNA
MCM22	YJR135C	Outer kinetochore protein and component of the Ctf3 subcomplex	physical	1	1	1	Affinity Capture-RNA
PAL1	YDR348C	Protein of unknown function thought to be involved in endocytosis	physical	1	1	1	Affinity Capture-RNA
FOL3	YMR113W	Dihydrofolate synthetase, involved in folic acid biosynthesis	physical	1	1	1	Affinity Capture-RNA
RAD14	YMR201C	Subunit of Nucleotide Excision Repair Factor 1 (NEF1)	physical	1	1	1	Affinity Capture-RNA
YGL036W	YGL036W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
INN1	YNL152W	Essential protein that associates with contractile actomyosin ring	physical	1	1	1	Affinity Capture-RNA
NIS1	YNL078W	Protein involved in axial bud site selection	physical	1	1	1	Affinity Capture-RNA
YMR262W	YMR262W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPL108W	YPL108W	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RIM2	YBR192W	Mitochondrial pyrimidine nucleotide transporter	physical	1	1	1	Affinity Capture-RNA
MPD1	YOR288C	Member of the protein disulfide isomerase (PDI) family	physical	1	1	1	Affinity Capture-RNA
POC4	YPL144W	Component of a heterodimeric Poc4p-Irc25p chaperone	physical	1	1	1	Affinity Capture-RNA
YRA2	YKL214C	Member of the REF (RNA and export factor binding proteins) family	physical	1	1	1	Affinity Capture-RNA
SIZ1	YDR409W	SUMO E3 ligase	physical	1	1	1	Affinity Capture-RNA
NPP2	YEL016C	Nucleotide pyrophosphatase/phosphodiesterase	physical	1	1	1	Affinity Capture-RNA
YJR056C	YJR056C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MBP1	YDL056W	Transcription factor	physical	1	1	1	Affinity Capture-RNA
FIG4	YNL325C	Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase	physical	1	1	1	Affinity Capture-RNA
VPS38	YLR360W	Part of a Vps34p phosphatidylinositol 3-kinase complex	physical	1	1	1	Affinity Capture-RNA
FES1	YBR101C	Hsp70 (Ssa1p) nucleotide exchange factor	physical	1	1	1	Affinity Capture-RNA
GLC3	YEL011W	Glycogen branching enzyme, involved in glycogen accumulation	physical	1	1	1	Affinity Capture-RNA
GAL11	YOL051W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
YAR1	YPL239W	Nucleocytoplasmic shuttling assembly chaperone	physical	1	1	1	Affinity Capture-RNA
PAM16	YJL104W	Subunit of the import motor (PAM complex)	physical	1	1	1	Affinity Capture-RNA
YPL191C	YPL191C	K48-specific deubiquitinating (DUB) enzyme	physical	1	1	1	Affinity Capture-RNA
MYO4	YAL029C	Type V myosin motor involved in actin-based transport of cargos	physical	1	1	1	Affinity Capture-RNA
GPN3	YLR243W	Putative GTPase with a role in biogenesis of RNA pol II and polIII	physical	1	1	1	Affinity Capture-RNA
SPB1	YCL054W	AdoMet-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
HRT3	YLR097C	Putative SCF-ubiquitin ligase F-box protein	physical	1	1	1	Affinity Capture-RNA
YIP1	YGR172C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
PHO2	YDL106C	Homeobox transcription factor	physical	1	1	1	Affinity Capture-RNA
MRPL17	YNL252C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
RRN9	YMR270C	Protein involved in promoting high level transcription of rDNA	physical	1	1	1	Affinity Capture-RNA
HAA1	YPR008W	Transcriptional activator involved in adaptation to weak acid stress	physical	1	1	1	Affinity Capture-RNA
YRB30	YGL164C	RanGTP-binding protein	physical	1	1	1	Affinity Capture-RNA
ODC1	YPL134C	Mitochondrial inner membrane transporter	physical	1	1	1	Affinity Capture-RNA
HOS3	YPL116W	Trichostatin A-insensitive homodimeric histone deacetylase (HDAC)	physical	1	1	1	Affinity Capture-RNA
RCM1	YNL022C	rRNA m5C methyltransferase	physical	1	1	1	Affinity Capture-RNA
PRM5	YIL117C	Pheromone-regulated protein, predicted to have 1 transmembrane segment	physical	1	1	1	Affinity Capture-RNA
SNF8	YPL002C	Component of the ESCRT-II complex	physical	1	1	1	Affinity Capture-RNA
REV7	YIL139C	Accessory subunit of DNA polymerase zeta	physical	1	1	1	Affinity Capture-RNA
MRX1	YER077C	Protein that associates with mitochondrial ribosome	physical	1	1	1	Affinity Capture-RNA
SOK1	YDR006C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TAD3	YLR316C	Subunit of tRNA-specific adenosine-34 deaminase	physical	1	1	1	Affinity Capture-RNA
SOV1	YMR066W	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
OPI1	YHL020C	Transcriptional regulator of a variety of genes	physical	1	1	1	Affinity Capture-RNA
NDJ1	YOL104C	Protein that regulates meiotic SPB cohesion and telomere clustering	physical	1	1	1	Affinity Capture-RNA
YOR097C	YOR097C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VMA22	YHR060W	Protein that is required for vacuolar H+-ATPase (V-ATPase) function	physical	1	1	1	Affinity Capture-RNA
KTI12	YKL110C	Protein that plays a role in modification of tRNA wobble nucleosides	physical	1	1	1	Affinity Capture-RNA
ILT1	YDR090C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YER134C	YER134C	Magnesium-dependent acid phosphatase	physical	1	1	1	Affinity Capture-RNA
ELF1	YKL160W	Transcription elongation factor with a conserved zinc finger domain	physical	1	1	1	Affinity Capture-RNA
PRP4	YPR178W	Splicing factor	physical	1	1	1	Affinity Capture-RNA
GIR2	YDR152W	Highly-acidic RWD domain-containing cytoplasmic protein	physical	1	1	1	Affinity Capture-RNA
YOL014W	YOL014W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RGA2	YDR379W	GTPase-activating protein for polarity-establishment protein Cdc42p	physical	1	1	1	Affinity Capture-RNA
ESC2	YDR363W	Sumo-like domain protein	physical	1	1	1	Affinity Capture-RNA
PMP3	YDR276C	Small plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
TAZ1	YPR140W	Lyso-phosphatidylcholine acyltransferase	physical	1	1	1	Affinity Capture-RNA
MSO1	YNR049C	Lipid-interacting protein in SNARE complex assembly machinery	physical	1	1	1	Affinity Capture-RNA
MSY1	YPL097W	Mitochondrial tyrosyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
PTP3	YER075C	Phosphotyrosine-specific protein phosphatase	physical	1	1	1	Affinity Capture-RNA
SHO1	YER118C	Transmembrane osmosensor for filamentous growth and HOG pathways	physical	1	1	1	Affinity Capture-RNA
DIN7	YDR263C	Mitochondrial nuclease functioning in DNA repair and replication	physical	1	1	1	Affinity Capture-RNA
RTG1	YOL067C	Transcription factor (bHLH) involved in interorganelle communication	physical	1	1	1	Affinity Capture-RNA
TIM22	YDL217C	Essential core component of mitochondrial TIM22 complex	physical	1	1	1	Affinity Capture-RNA
DSS1	YMR287C	3'-5' exoribonuclease	physical	1	1	1	Affinity Capture-RNA
HFL1	YKR051W	Vacuole membrane protein that interacts with Atg8p	physical	1	1	1	Affinity Capture-RNA
SPT4	YGR063C	Spt4p/5p (DSIF) transcription elongation factor complex subunit	physical	1	1	1	Affinity Capture-RNA
LPP1	YDR503C	Lipid phosphate phosphatase	physical	1	1	1	Affinity Capture-RNA
MIA40	YKL195W	Import and assembly protein in mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
YNG1	YOR064C	Subunit of the NuA3 histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
RSO55	YLR281C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNL011C	YNL011C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PEX19	YDL065C	Chaperone and import receptor for newly-synthesized class I PMPs	physical	1	1	1	Affinity Capture-RNA
PDE1	YGL248W	Low-affinity cyclic AMP phosphodiesterase	physical	1	1	1	Affinity Capture-RNA
TDA9	YML081W	Transcription factor that regulates acetate production	physical	1	1	1	Affinity Capture-RNA
FLO8	YER109C	Transcription factor	physical	1	1	1	Affinity Capture-RNA
MSM1	YGR171C	Mitochondrial methionyl-tRNA synthetase (MetRS)	physical	1	1	1	Affinity Capture-RNA
SPC24	YMR117C	Component of the kinetochore-associated Ndc80 complex	physical	1	1	1	Affinity Capture-RNA
FCF1	YDR339C	PINc domain endonuclease	physical	1	1	1	Affinity Capture-RNA
HEM25	YDL119C	Mitochondrial glycine transporter	physical	1	1	1	Affinity Capture-RNA
MPP10	YJR002W	Component of the SSU processome and 90S preribosome	physical	1	1	1	Affinity Capture-RNA
PRP5	YBR237W	RNA helicase in the DEAD-box family	physical	1	1	1	Affinity Capture-RNA
YPT35	YHR105W	Endosomal protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PHO4	YFR034C	Basic helix-loop-helix (bHLH) transcription factor of the myc-family	physical	1	1	1	Affinity Capture-RNA
MRS4	YKR052C	Iron transporter of the mitochondrial carrier family	physical	1	1	1	Affinity Capture-RNA
GTS1	YGL181W	Protein involved in Arf3p regulation and in transcription regulation	physical	1	1	1	Affinity Capture-RNA
OKP1	YGR179C	Outer kinetochore protein required for accurate chromosome segregation	physical	1	1	1	Affinity Capture-RNA
YKU70	YMR284W	Subunit of the telomeric Ku complex (Yku70p-Yku80p)	physical	1	1	1	Affinity Capture-RNA
RAD57	YDR004W	Protein that stimulates strand exchange	physical	1	1	1	Affinity Capture-RNA
DSN1	YIR010W	Essential component of the outer kinetochore MIND complex	physical	1	1	1	Affinity Capture-RNA
DSN1	YIR010W	Essential component of the outer kinetochore MIND complex	genetic	1	1	1	Dosage Rescue
OST2	YOR103C	Epsilon subunit of the oligosaccharyltransferase complex	physical	1	1	1	Affinity Capture-RNA
SNF2	YOR290C	Catalytic subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
YDL129W	YDL129W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MED6	YHR058C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
UGA3	YDL170W	Transcriptional activator for GABA-dependent induction of GABA genes	physical	1	1	1	Affinity Capture-RNA
VPS25	YJR102C	Component of the ESCRT-II complex	physical	1	1	1	Affinity Capture-RNA
LAF1	YMR102C	Sterol-binding beta-propeller protein	physical	1	1	1	Affinity Capture-RNA
MRP49	YKL167C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
DOM34	YNL001W	Protein that facilitates ribosomal subunit dissociation	physical	1	1	1	Affinity Capture-RNA
PKP2	YGL059W	Mitochondrial protein kinase	physical	1	1	1	Affinity Capture-RNA
VHS2	YIL135C	Regulator of septin dynamics	physical	1	1	1	Affinity Capture-RNA
UPS2	YLR168C	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
YML119W	YML119W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VPS72	YDR485C	Htz1p-binding component of the SWR1 complex	physical	1	1	1	Affinity Capture-RNA
ERG29	YMR134W	Protein of unknown function involved in ergosterol biosynthesis	physical	1	1	1	Affinity Capture-RNA
TAF4	YMR005W	TFIID subunit (48 kDa)	physical	1	1	1	Affinity Capture-RNA
LIF1	YGL090W	Component of the DNA ligase IV complex	physical	1	1	1	Affinity Capture-RNA
LRE1	YCL051W	Protein involved in control of cell wall structure and stress response	physical	1	1	1	Affinity Capture-RNA
LDO16	YMR148W	Protein of unknown function with possible role in spore wall assembly	physical	1	1	1	Affinity Capture-RNA
YPL216W	YPL216W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SET3	YKR029C	Defining member of the SET3 histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
YJL118W	YJL118W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PRP9	YDL030W	Subunit of the SF3a splicing factor complex	physical	1	1	1	Affinity Capture-RNA
SIW14	YNL032W	Inositol phosphatase involved in inositol pyrophosphate metabolism	physical	1	1	1	Affinity Capture-RNA
ZRG17	YNR039C	Endoplasmic reticulum zinc transporter	physical	1	1	1	Affinity Capture-RNA
NIP100	YPL174C	Large subunit of the dynactin complex	physical	1	1	1	Affinity Capture-RNA
SMX3	YPR182W	Core Sm protein Sm F	physical	1	1	1	Affinity Capture-RNA
SLX1	YBR228W	Endonuclease involved in DNA recombination and repair	physical	1	1	1	Affinity Capture-RNA
MTF2	YDL044C	Mitochondrial protein that interacts with mitochondrial RNA polymerase	physical	1	1	1	Affinity Capture-RNA
PDL32	YMR087W	Putative ADP-ribose-1''-monophosphatase	physical	1	1	1	Affinity Capture-RNA
TGL3	YMR313C	Bifunctional triacylglycerol lipase and LPE acyltransferase	physical	1	1	1	Affinity Capture-RNA
TOK1	YJL093C	Outward-rectifier potassium channel of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
VAC17	YCL063W	Phosphoprotein involved in vacuole inheritance	physical	1	1	1	Affinity Capture-RNA
FKH2	YNL068C	Forkhead family transcription factor	physical	1	1	1	Affinity Capture-RNA
KIP1	YBL063W	Kinesin-related motor protein	physical	1	1	1	Affinity Capture-RNA
GEP7	YGL057C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PRM1	YNL279W	Pheromone-regulated multispanning membrane protein	physical	1	1	1	Affinity Capture-RNA
RAD54	YGL163C	DNA-dependent ATPase that stimulates strand exchange	physical	1	1	1	Affinity Capture-RNA
VPS24	YKL041W	One of four subunits of the ESCRT-III complex	physical	1	1	1	Affinity Capture-RNA
RMP1	YLR145W	Subunit of RNase MRP	physical	1	1	1	Affinity Capture-RNA
PCL10	YGL134W	Pho85p cyclin	physical	1	1	1	Affinity Capture-RNA
YMD8	YML038C	Putative nucleotide sugar transporter	physical	1	1	1	Affinity Capture-RNA
EKI1	YDR147W	Ethanolamine kinase	physical	1	1	1	Affinity Capture-RNA
MRL1	YPR079W	Membrane protein	physical	1	1	1	Affinity Capture-RNA
SPO12	YHR152W	Nucleolar protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YDR131C	YDR131C	F-box protein subunit of SCF ubiquitin ligase complex	physical	1	1	1	Affinity Capture-RNA
SRP102	YKL154W	Signal recognition particle (SRP) receptor beta subunit	physical	1	1	1	Affinity Capture-RNA
SNU71	YGR013W	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-RNA
IBD2	YNL164C	Component of the BUB2-dependent spindle checkpoint pathway	physical	1	1	1	Affinity Capture-RNA
YDL206W	YDL206W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SIC1	YLR079W	Cyclin-dependent kinase inhibitor (CKI)	physical	1	1	1	Affinity Capture-RNA
GPB2	YAL056W	Multistep regulator of cAMP-PKA signaling	physical	1	1	1	Affinity Capture-RNA
ICS2	YBR157C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SSN3	YPL042C	Component of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
HEH2	YDR458C	Inner nuclear membrane (INM) protein	physical	1	1	1	Affinity Capture-RNA
PUS6	YGR169C	tRNA:pseudouridine synthase	physical	1	1	1	Affinity Capture-RNA
GDH2	YDL215C	NAD(+)-dependent glutamate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ETP1	YHL010C	Protein of unknown function required for growth on ethanol	physical	1	1	1	Affinity Capture-RNA
YBL081W	YBL081W	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GTF1	YGR102C	Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex	physical	1	1	1	Affinity Capture-RNA
RSC58	YLR033W	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
SLI15	YBR156C	Subunit of the conserved chromosomal passenger complex (CPC)	physical	1	1	1	Affinity Capture-RNA
SPC29	YPL124W	Inner plaque spindle pole body (SPB) component	physical	1	1	1	Affinity Capture-RNA
RRP17	YDR412W	5' exoribonuclease required for 5' end processing of pre-60S rRNA	physical	1	1	1	Affinity Capture-RNA
FMP25	YLR077W	Protein required for assembly of respiratory complex III	physical	1	1	1	Affinity Capture-RNA
MCM16	YPR046W	Component of the Ctf19 complex and the COMA subcomplex	physical	1	1	1	Affinity Capture-RNA
SEC15	YGL233W	Essential 113 kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-RNA
NRG2	YBR066C	Transcriptional repressor	physical	1	1	1	Affinity Capture-RNA
RSM23	YGL129C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
SNX41	YDR425W	Sorting nexin	physical	1	1	1	Affinity Capture-RNA
ECO1	YFR027W	Acetyltransferase required for sister chromatid cohesion	physical	1	1	1	Affinity Capture-RNA
HIR2	YOR038C	Subunit of HIR nucleosome assembly complex	physical	1	1	1	Affinity Capture-RNA
SDC1	YDR469W	Subunit of the COMPASS (Set1C) complex	physical	1	1	1	Affinity Capture-RNA
IST1	YNL265C	Protein with positive role in the multivesicular body sorting pathway	physical	1	1	1	Affinity Capture-RNA
SWD1	YAR003W	Subunit of the COMPASS (Set1C) complex	physical	1	1	1	Affinity Capture-RNA
YJL132W	YJL132W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TAD1	YGL243W	tRNA-specific adenosine deaminase	physical	1	1	1	Affinity Capture-RNA
NSG2	YNL156C	Protein involved in regulation of sterol biosynthesis	physical	1	1	1	Affinity Capture-RNA
TAF12	YDR145W	Subunit (61/68 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
TAF13	YML098W	TFIID subunit (19 kDa)	physical	1	1	1	Affinity Capture-RNA
YRR1	YOR162C	Zn2-Cys6 zinc-finger transcription factor	physical	1	1	1	Affinity Capture-RNA
ENV11	YGR071C	Protein proposed to be involved in vacuolar functions	physical	1	1	1	Affinity Capture-RNA
VPS73	YGL104C	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
SAW1	YAL027W	5'- and 3'-flap DNA binding protein	physical	1	1	1	Affinity Capture-RNA
RSM10	YDR041W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
TPM2	YIL138C	Minor isoform of tropomyosin	physical	1	1	1	Affinity Capture-RNA
NAM8	YHR086W	RNA binding protein, component of the U1 snRNP protein	physical	1	1	1	Affinity Capture-RNA
YLR177W	YLR177W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YKL075C	YKL075C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MTC3	YGL226W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNG2	YHR090C	Subunit of NuA4, an essential histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
SPT10	YJL127C	Histone H3 acetylase with a role in transcriptional regulation	physical	1	1	1	Affinity Capture-RNA
EMC5	YIL027C	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
EAF6	YJR082C	Subunit of the NuA4 acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
UAF30	YOR295W	Subunit of UAF (upstream activation factor) complex	physical	1	1	1	Affinity Capture-RNA
ELM1	YKL048C	Serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
RAD4	YER162C	Damaged-DNA binding subunit of Nuclear Excision Repair Factor 2	physical	1	1	1	Affinity Capture-RNA
YMR209C	YMR209C	Putative S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
ULP1	YPL020C	Protease that specifically cleaves Smt3p protein conjugates	physical	1	1	1	Affinity Capture-RNA
SNT309	YPR101W	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
FUS1	YCL027W	Membrane protein localized to the shmoo tip	physical	1	1	1	Affinity Capture-RNA
NAR1	YNL240C	Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery	physical	1	1	1	Affinity Capture-RNA
GPI11	YDR302W	ER membrane protein involved in a late step of GPI anchor assembly	physical	1	1	1	Affinity Capture-RNA
YAP1	YML007W	Basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
SPT20	YOL148C	Subunit of the SAGA transcriptional regulatory complex	physical	1	1	1	Affinity Capture-RNA
VAM3	YOR106W	Syntaxin-like vacuolar t-SNARE	physical	1	1	1	Affinity Capture-RNA
TMC1	YOR052C	AN1-type zinc finger protein, effector of proteotoxic stress response	physical	1	1	1	Affinity Capture-RNA
KIN28	YDL108W	Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly	physical	1	1	1	Affinity Capture-RNA
GLE1	YDL207W	Cytoplasmic nucleoporin required for polyadenylated mRNA export	physical	1	1	1	Affinity Capture-RNA
TIM54	YJL054W	Component of the mitochondrial TIM22 complex	physical	1	1	1	Affinity Capture-RNA
ECM4	YKR076W	S-glutathionyl-(chloro)hydroquinone reductase (GS-HQR)	physical	1	1	1	Affinity Capture-RNA
TLG1	YDR468C	Essential t-SNARE that mediates fusion of vesicles with the late Golgi	physical	1	1	1	Affinity Capture-RNA
SME1	YOR159C	Core Sm protein Sm E	physical	1	1	1	Affinity Capture-RNA
FYV7	YLR068W	Nucleolar protein required for maturation of 18S rRNA	physical	1	1	1	Affinity Capture-RNA
NEJ1	YLR265C	DNA end-binding protein required for nonhomologous end joining (NHEJ)	physical	1	1	1	Affinity Capture-RNA
SLX4	YLR135W	Endonuclease involved in processing DNA	physical	1	1	1	Affinity Capture-RNA
IES3	YLR052W	Subunit of the INO80 chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
PIF1	YML061C	DNA helicase, potent G-quadruplex DNA binder/unwinder	physical	1	1	1	Affinity Capture-RNA
PTC1	YDL006W	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-RNA
KAR4	YCL055W	Transcription factor required for response to pheromones	physical	1	1	1	Affinity Capture-RNA
MRPL32	YCR003W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
SEI1	YLR404W	Seipin involved in lipid droplet (LD) assembly	physical	1	1	1	Affinity Capture-RNA
PIN2	YOR104W	Exomer-dependent cargo protein	physical	1	1	1	Affinity Capture-RNA
PZF1	YPR186C	Transcription factor IIIA (TFIIIA)	physical	1	1	1	Affinity Capture-RNA
IAH1	YOR126C	Isoamyl acetate-hydrolyzing esterase	physical	1	1	1	Affinity Capture-RNA
IPI1	YHR085W	Component of the Rix1 complex and possibly pre-replicative complexes	physical	1	1	1	Affinity Capture-RNA
PPZ2	YDR436W	Serine/threonine protein phosphatase Z, isoform of Ppz1p	physical	1	1	1	Affinity Capture-RNA
DPB3	YBR278W	Third-largest subunit of DNA polymerase II (DNA polymerase epsilon)	physical	1	1	1	Affinity Capture-RNA
DOS2	YDR068W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TAF9	YMR236W	Subunit (17 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
MSN4	YKL062W	Stress-responsive transcriptional activator	physical	1	1	1	Affinity Capture-RNA
SOH1	YGL127C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
HNT1	YDL125C	Adenosine 5'-monophosphoramidase	physical	1	1	1	Affinity Capture-RNA
SKM1	YOL113W	Member of the PAK family of serine/threonine protein kinases	physical	1	1	1	Affinity Capture-RNA
GIM5	YML094W	Subunit of the heterohexameric cochaperone prefoldin complex	physical	1	1	1	Affinity Capture-RNA
PHO89	YBR296C	Plasma membrane Na+/Pi cotransporter	physical	1	1	1	Affinity Capture-RNA
SHE1	YBL031W	Mitotic spindle protein	physical	1	1	1	Affinity Capture-RNA
NKP1	YDR383C	Central kinetochore protein and subunit of the Ctf19 complex	physical	1	1	1	Affinity Capture-RNA
UTP6	YDR449C	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
SEC72	YLR292C	Non-essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-RNA
MIH1	YMR036C	Protein tyrosine phosphatase	physical	1	1	1	Affinity Capture-RNA
YPR084W	YPR084W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RER2	YBR002C	Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1	physical	1	1	1	Affinity Capture-RNA
SNF12	YNR023W	73 kDa subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
KAR3	YPR141C	Minus-end-directed microtubule motor	physical	1	1	1	Affinity Capture-RNA
YDL012C	YDL012C	Tail-anchored plasma membrane protein with a conserved CYSTM module	physical	1	1	1	Affinity Capture-RNA
NRM1	YNR009W	Transcriptional co-repressor of MBF-regulated gene expression	physical	1	1	1	Affinity Capture-RNA
MRF1	YGL143C	Mitochondrial translation release factor	physical	1	1	1	Affinity Capture-RNA
QCR7	YDR529C	Subunit 7 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Affinity Capture-RNA
VHS3	YOR054C	Negative regulatory subunit of protein phosphatase 1 Ppz1p	physical	1	1	1	Affinity Capture-RNA
MUD2	YKL074C	Protein involved in early pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
DPI35	YMR130W	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SRP14	YDL092W	Signal recognition particle (SRP) subunit	physical	1	1	1	Affinity Capture-RNA
SRY1	YKL218C	3-hydroxyaspartate dehydratase	physical	1	1	1	Affinity Capture-RNA
NSE1	YLR007W	Component of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
FSH2	YMR222C	Putative serine hydrolase that localizes to the cytoplasm	physical	1	1	1	Affinity Capture-RNA
ZDS1	YMR273C	Protein with a role in regulating Swe1p-dependent polarized growth	physical	1	1	1	Affinity Capture-RNA
SFI1	YLL003W	Centrin (Cdc31p)-binding protein required for SPB duplication	physical	1	1	1	Affinity Capture-RNA
YNL234W	YNL234W	Protein of unknown function with similarity to globins	physical	1	1	1	Affinity Capture-RNA
TIP20	YGL145W	Peripheral membrane protein required for COPI vesicle fusion to the ER	physical	1	1	1	Affinity Capture-RNA
YAP3	YHL009C	Basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
MCD1	YDL003W	Essential alpha-kleisin subunit of the cohesin complex	physical	1	1	1	Affinity Capture-RNA
ITT1	YML068W	Protein that modulates the efficiency of translation termination	physical	1	1	1	Affinity Capture-RNA
SED5	YLR026C	cis-Golgi t-SNARE syntaxin	physical	1	1	1	Affinity Capture-RNA
STE11	YLR362W	Signal transducing MEK kinase	physical	1	1	1	Affinity Capture-RNA
HST3	YOR025W	Sirtuin, histone H3 deacetylase	physical	1	1	1	Affinity Capture-RNA
SHE2	YKL130C	RNA-binding protein that binds specific mRNAs and interacts with She3p	physical	1	1	1	Affinity Capture-RNA
ISY1	YJR050W	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
REC107	YJR021C	Protein involved in early stages of meiotic recombination	physical	1	1	1	Affinity Capture-RNA
MRPL27	YBR282W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
TAF3	YPL011C	TFIID subunit (47 kDa)	physical	1	1	1	Affinity Capture-RNA
YOR342C	YOR342C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPC11	YDR045C	RNA polymerase III subunit C11	physical	1	1	1	Affinity Capture-RNA
FAR10	YLR238W	Protein involved in recovery from arrest in response to pheromone	physical	1	1	1	Affinity Capture-RNA
RSM22	YKL155C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
HTC1	YPL067C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PHO23	YNL097C	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
SMN1	YHR202W	Putative AMP hydrolase	physical	1	1	1	Affinity Capture-RNA
SGF73	YGL066W	Subunit of DUBm module of SAGA and SLIK	physical	1	1	1	Affinity Capture-RNA
MED7	YOL135C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MSN1	YOL116W	Transcriptional activator	physical	1	1	1	Affinity Capture-RNA
PRP40	YKL012W	U1 snRNP protein involved in splicing	physical	1	1	1	Affinity Capture-RNA
SNL1	YIL016W	Ribosome-associated protein	physical	1	1	1	Affinity Capture-RNA
UBC7	YMR022W	Ubiquitin conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
YMR114C	YMR114C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
JJJ3	YJR097W	Iron-binding protein	physical	1	1	1	Affinity Capture-RNA
HST4	YDR191W	NAD(+)-dependent protein deacetylase	physical	1	1	1	Affinity Capture-RNA
MTC6	YHR151C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TRS23	YDR246W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
YPI1	YFR003C	Regulatory subunit of the type I protein phosphatase (PP1) Glc7p	physical	1	1	1	Affinity Capture-RNA
PUN1	YLR414C	Plasma membrane protein with a role in cell wall integrity	physical	1	1	1	Affinity Capture-RNA
MRC1	YCL061C	S-phase checkpoint protein required for DNA replication	physical	1	1	1	Affinity Capture-RNA
SNU23	YDL098C	Component of the U4/U6.U5 snRNP complex	physical	1	1	1	Affinity Capture-RNA
PTP2	YOR208W	Phosphotyrosine-specific phosphatase	physical	1	1	1	Affinity Capture-RNA
YNR029C	YNR029C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SDH7	YDR511W	Mitochondrial protein involved in assembly of succinate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
YSY6	YBR162W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRPL37	YBR268W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
YFH1	YDL120W	Mitochondrial matrix iron chaperone	physical	1	1	1	Affinity Capture-RNA
VPS60	YDR486C	Protein involved in late endosome to vacuole transport	physical	1	1	1	Affinity Capture-RNA
RAD6	YGL058W	Ubiquitin-conjugating enzyme (E2)	physical	1	1	1	Affinity Capture-RNA
INP1	YMR204C	Peripheral membrane protein of peroxisomes	physical	1	1	1	Affinity Capture-RNA
SRL2	YLR082C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NUT2	YPR168W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
NRK1	YNL129W	Nicotinamide riboside kinase	physical	1	1	1	Affinity Capture-RNA
SEN2	YLR105C	Subunit of the tRNA splicing endonuclease	physical	1	1	1	Affinity Capture-RNA
FMS1	YMR020W	Polyamine oxidase	physical	1	1	1	Affinity Capture-RNA
DST1	YGL043W	General transcription elongation factor TFIIS	physical	1	1	1	Affinity Capture-RNA
DST1	YGL043W	General transcription elongation factor TFIIS	genetic	1	1	1	Synthetic Growth Defect
EAF5	YEL018W	Non-essential subunit of the NuA4 acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
GLN3	YER040W	Transcriptional activator in nitrogen catabolite repression system	physical	1	1	1	Affinity Capture-RNA
FDO1	YMR144W	Protein involved in directionality of mating type switching	physical	1	1	1	Affinity Capture-RNA
YDR222W	YDR222W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TOD6	YBL054W	PAC motif binding protein involved in rRNA and ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
TEC1	YBR083W	Transcription factor targeting filamentation genes and Ty1 expression	physical	1	1	1	Affinity Capture-RNA
GIC1	YHR061C	Rho-family GTPase interacting protein and Cdc42p effector	physical	1	1	1	Affinity Capture-RNA
YET1	YKL065C	Endoplasmic reticulum transmembrane protein	physical	1	1	1	Affinity Capture-RNA
FYV10	YIL097W	Subunit of GID complex	physical	1	1	1	Affinity Capture-RNA
NTG2	YOL043C	DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase	physical	1	1	1	Affinity Capture-RNA
SLM4	YBR077C	Subunit of the EGO/GSE complex	physical	1	1	1	Affinity Capture-RNA
RPB10	YOR210W	RNA polymerase subunit ABC10-beta	physical	1	1	1	Affinity Capture-RNA
MET28	YIR017C	bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex	physical	1	1	1	Affinity Capture-RNA
SBE2	YDR351W	Protein required for bud growth	physical	1	1	1	Affinity Capture-RNA
NOP6	YDL213C	rRNA-binding protein required for 40S ribosomal subunit biogenesis	physical	1	1	1	Affinity Capture-RNA
SPP381	YBR152W	mRNA splicing factor, component of U4/U6.U5 tri-snRNP	physical	1	1	1	Affinity Capture-RNA
GIC2	YDR309C	Rho-family GTPase interacting protein and Cdc42p effector	physical	1	1	1	Affinity Capture-RNA
YHP1	YDR451C	Homeobox transcriptional repressor	physical	1	1	1	Affinity Capture-RNA
PFD1	YJL179W	Subunit of heterohexameric prefoldin	physical	1	1	1	Affinity Capture-RNA
NSI1	YDR026C	RNA polymerase I termination factor	physical	1	1	1	Affinity Capture-RNA
YAP7	YOL028C	Transcriptional repressor of nitric oxide oxidase	physical	1	1	1	Affinity Capture-RNA
UPF3	YGR072W	Component of the nonsense-mediated mRNA decay (NMD) pathway	physical	1	1	1	Affinity Capture-RNA
YGL108C	YGL108C	Protein of unknown function, predicted to be palmitoylated	physical	1	1	1	Affinity Capture-RNA
PAC1	YOR269W	Regulator of dynein, involved in intracellular transport	physical	1	1	1	Affinity Capture-RNA
HDA2	YDR295C	Subunit of HDA1 histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
MDM36	YPR083W	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
PET54	YGR222W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
MGP12	YDR286C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
UBC13	YDR092W	E2 ubiquitin-conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
SSN8	YNL025C	Cyclin-like component of RNA polymerase II holoenzyme	physical	1	1	1	Affinity Capture-RNA
SFG1	YOR315W	Nuclear protein putative transcription factor	physical	1	1	1	Affinity Capture-RNA
LSB5	YCL034W	Protein involved in membrane-trafficking events at plasma membrane	physical	1	1	1	Affinity Capture-RNA
SLX5	YDL013W	Subunit of the Slx5-Slx8 SUMO-targeted Ub ligase (STUbL) complex	physical	1	1	1	Affinity Capture-RNA
YBR013C	YBR013C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NAM2	YLR382C	Mitochondrial leucyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
YBL028C	YBL028C	Protein of unknown function that may interact with ribosomes	physical	1	1	1	Affinity Capture-RNA
YNR048W	YNR048W	Potential noncatalytic subunit for phospholipid translocase Dnf3p	physical	1	1	1	Affinity Capture-RNA
PGA1	YNL158W	Essential component of GPI-mannosyltransferase II	physical	1	1	1	Affinity Capture-RNA
PAM18	YLR008C	Subunit of the import motor (PAM complex)	physical	1	1	1	Affinity Capture-RNA
URN1	YPR152C	Protein of unknown function containing WW and FF domains	physical	1	1	1	Affinity Capture-RNA
DIB1	YPR082C	17-kDa component of the U4/U6aU5 tri-snRNP	physical	1	1	1	Affinity Capture-RNA
DOC1	YGL240W	Processivity factor	physical	1	1	1	Affinity Capture-RNA
RPB9	YGL070C	RNA polymerase II subunit B12.6	physical	1	1	1	Affinity Capture-RNA
TLG2	YOL018C	Syntaxin-like t-SNARE	physical	1	1	1	Affinity Capture-RNA
TFS1	YLR178C	Inhibitor of carboxypeptidase Y (Prc1p), and Ras GAP (Ira2p)	physical	1	1	1	Affinity Capture-RNA
TRX3	YCR083W	Mitochondrial thioredoxin	physical	1	1	1	Affinity Capture-RNA
SPH1	YLR313C	Protein involved in shmoo formation and bipolar bud site selection	physical	1	1	1	Affinity Capture-RNA
HOR7	YMR251W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GUF1	YLR289W	Mitochondrial matrix GTPase	physical	1	1	1	Affinity Capture-RNA
RRP7	YCL031C	Essential protein involved in rRNA processing and ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
YHR210C	YHR210C	Putative aldose 1-epimerase superfamily protein	physical	1	1	1	Affinity Capture-RNA
IPF1	YDL176W	Protein of unknown function involved in actin patch formation	physical	1	1	1	Affinity Capture-RNA
PFK27	YOL136C	6-phosphofructo-2-kinase	physical	1	1	1	Affinity Capture-RNA
YHC3	YJL059W	Protein required for the ATP-dependent transport of arginine	physical	1	1	1	Affinity Capture-RNA
YML053C	YML053C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YLF2	YHL014C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VPS20	YMR077C	Myristoylated subunit of the ESCRT-III complex	physical	1	1	1	Affinity Capture-RNA
SAS3	YBL052C	Histone acetyltransferase catalytic subunit of NuA3 complex	physical	1	1	1	Affinity Capture-RNA
YBR259W	YBR259W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MAL11	YGR289C	High-affinity maltose transporter (alpha-glucoside transporter)	physical	1	1	1	Affinity Capture-RNA
SWT1	YOR166C	RNA endoribonuclease involved in perinuclear mRNP quality control	physical	1	1	1	Affinity Capture-RNA
NHP10	YDL002C	Non-essential INO80 chromatin remodeling complex subunit	physical	1	1	1	Affinity Capture-RNA
SMD2	YLR275W	Core Sm protein Sm D2	physical	1	1	1	Affinity Capture-RNA
KNH1	YDL049C	Protein with similarity to Kre9p	physical	1	1	1	Affinity Capture-RNA
RNH203	YLR154C	Ribonuclease H2 subunit	physical	1	1	1	Affinity Capture-RNA
UFE1	YOR075W	t-SNARE protein required for retrograde vesicular traffic	physical	1	1	1	Affinity Capture-RNA
HAP3	YBL021C	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	physical	1	1	1	Affinity Capture-RNA
HAP2	YGL237C	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	physical	1	1	1	Affinity Capture-RNA
MKS1	YNL076W	Pleiotropic negative transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
MRP13	YGR084C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
IRC23	YOR044W	Protein of unknown function involved in multidrug resistance	physical	1	1	1	Affinity Capture-RNA
PET100	YDR079W	Chaperone that facilitates the assembly of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
PIG1	YLR273C	Putative targeting subunit for type-1 protein phosphatase Glc7p	physical	1	1	1	Affinity Capture-RNA
YCR090C	YCR090C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TRS20	YBR254C	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
MED4	YOR174W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
USE1	YGL098W	Essential SNARE protein localized to the ER	physical	1	1	1	Affinity Capture-RNA
RTS2	YOR077W	Basic zinc-finger protein	physical	1	1	1	Affinity Capture-RNA
MFB1	YDR219C	Mitochondria-associated F-box protein	physical	1	1	1	Affinity Capture-RNA
TFB1	YDR311W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	1	1	1	Affinity Capture-RNA
PEX14	YGL153W	Central component of the peroxisomal importomer complex	physical	1	1	1	Affinity Capture-RNA
YOR292C	YOR292C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LDB18	YLL049W	Component of the dynactin complex	physical	1	1	1	Affinity Capture-RNA
MUB1	YMR100W	MYND domain-containing protein	physical	1	1	1	Affinity Capture-RNA
RSM18	YER050C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
SHU2	YDR078C	Component of Shu complex (aka PCSS complex)	physical	1	1	1	Affinity Capture-RNA
TDA6	YPR157W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YHL008C	YHL008C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PXR1	YGR280C	Essential protein involved in rRNA and snoRNA maturation	physical	1	1	1	Affinity Capture-RNA
YBR225W	YBR225W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TAD2	YJL035C	Subunit of tRNA-specific adenosine-34 deaminase	physical	1	1	1	Affinity Capture-RNA
RRT14	YIL127C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPR2	YIR015W	Subunit of nuclear RNase P	physical	1	1	1	Affinity Capture-RNA
PTP1	YDL230W	Phosphotyrosine-specific protein phosphatase	physical	1	1	1	Affinity Capture-RNA
PRP3	YDR473C	Splicing factor	physical	1	1	1	Affinity Capture-RNA
DPI34	YOR114W	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PIC2	YER053C	Mitochondrial copper and phosphate carrier	physical	1	1	1	Affinity Capture-RNA
SAS2	YMR127C	Histone acetyltransferase (HAT) catalytic subunit of the SAS complex	physical	1	1	1	Affinity Capture-RNA
PET123	YOR158W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
YLR407W	YLR407W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MIG2	YGL209W	Zinc finger transcriptional repressor	physical	1	1	1	Affinity Capture-RNA
SYC1	YOR179C	Subunit of the APT subcomplex of cleavage and polyadenylation factor	physical	1	1	1	Affinity Capture-RNA
IFM1	YOL023W	Mitochondrial translation initiation factor 2	physical	1	1	1	Affinity Capture-RNA
SNF5	YBR289W	Subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
KRE28	YDR532C	Subunit of a kinetochore-microtubule binding complex	physical	1	1	1	Affinity Capture-RNA
SRB6	YBR253W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MRPS16	YPL013C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
TMA10	YLR327C	Protein of unknown function that associates with ribosomes	physical	1	1	1	Affinity Capture-RNA
RBS1	YDL189W	Protein involved in assembly of the RNA Pol III complex	physical	1	1	1	Affinity Capture-RNA
PET117	YER058W	Assembly factor that couples heme a synthesis to complex IV assembly	physical	1	1	1	Affinity Capture-RNA
MRX15	YNR040W	Membrane-associated mitoribosome receptor	physical	1	1	1	Affinity Capture-RNA
HUA2	YOR284W	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RAD10	YML095C	Single-stranded DNA endonuclease (with Rad1p)	physical	1	1	1	Affinity Capture-RNA
NNF1	YJR112W	Essential component of the outer kinetochore MIND complex	physical	1	1	1	Affinity Capture-RNA
ISA2	YPR067W	Protein required for maturation of mitochondrial [4Fe-4S] proteins	physical	1	1	1	Affinity Capture-RNA
IMH1	YLR309C	Protein involved in vesicular transport	physical	1	1	1	Affinity Capture-RNA
EFG1	YGR271C-A	Ribosome biogenesis factor required for maturation of 18S rRNA	physical	1	1	1	Affinity Capture-RNA
YNL144C	YNL144C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
IES4	YOR189W	Component of the INO80 chromatiin remodeling complex	physical	1	1	1	Affinity Capture-RNA
PET20	YPL159C	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
MTR3	YGR158C	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-RNA
TAF10	YDR167W	Subunit (145 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
GLD1	YPR109W	Component of Dsc E3 ligase complex in Golgi and endosomes	physical	1	1	1	Affinity Capture-RNA
GPI19	YDR437W	Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI	physical	1	1	1	Affinity Capture-RNA
SLX9	YGR081C	Protein required for pre-rRNA processing	physical	1	1	1	Affinity Capture-RNA
OPY1	YBR129C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LRG1	YDL240W	GTPase-activating protein (GAP)	physical	1	1	1	Affinity Capture-RNA
MPA43	YNL249C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
KCH1	YJR054W	Potassium transporter that mediates K+ influx	physical	1	1	1	Affinity Capture-RNA
MRPL38	YKL170W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MPP6	YNR024W	Nuclear exosome-associated RNA binding protein	physical	1	1	1	Affinity Capture-RNA
PDP3	YLR455W	Component of the NuA3b histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
SWC4	YGR002C	Component of the Swr1p complex that incorporates Htz1p into chromatin	physical	1	1	1	Affinity Capture-RNA
IRC6	YFR043C	Clathrin coat accessory factor	physical	1	1	1	Affinity Capture-RNA
YGL176C	YGL176C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MAC1	YMR021C	Copper-sensing transcription factor	physical	1	1	1	Affinity Capture-RNA
MCM1	YMR043W	Transcription factor	physical	1	1	1	Affinity Capture-RNA
SLF1	YDR515W	RNA binding protein that associates with polysomes	physical	1	1	1	Affinity Capture-RNA
RAD18	YCR066W	E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
PBP2	YBR233W	RNA binding protein	physical	1	1	1	Affinity Capture-RNA
JNM1	YMR294W	Component of the yeast dynactin complex	physical	1	1	1	Affinity Capture-RNA
SMT1	YJL147C	Translational repressor of the mitochondrial ATP6/8 mRNA	physical	1	1	1	Affinity Capture-RNA
SWD3	YBR175W	Essential subunit of the COMPASS (Set1C) complex	physical	1	1	1	Affinity Capture-RNA
TOS2	YGR221C	Protein involved in localization of Cdc24p to the site of bud growth	physical	1	1	1	Affinity Capture-RNA
MRPL51	YPR100W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
KIP3	YGL216W	Kinesin-related antiparallel sliding motor protein	physical	1	1	1	Affinity Capture-RNA
TMA23	YMR269W	Nucleolar protein implicated in ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
POP7	YBR167C	Subunit of RNase MRP, nuclear RNase P and telomerase	physical	1	1	1	Affinity Capture-RNA
PRP45	YAL032C	Protein required for pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
PSF1	YDR013W	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	physical	1	1	1	Affinity Capture-RNA
YAF9	YNL107W	Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes	physical	1	1	1	Affinity Capture-RNA
EUC1	YMR111C	Sequence-specific DNA binding protein	physical	1	1	1	Affinity Capture-RNA
SRL3	YKR091W	Repressor of transcription at Start	physical	1	1	1	Affinity Capture-RNA
SEN15	YMR059W	Subunit of the tRNA splicing endonuclease	physical	1	1	1	Affinity Capture-RNA
SWC5	YBR231C	Component of the SWR1 complex	physical	1	1	1	Affinity Capture-RNA
PDS1	YDR113C	Securin	physical	1	1	1	Affinity Capture-RNA
KEG1	YFR042W	Integral membrane protein of the ER	physical	1	1	1	Affinity Capture-RNA
NVJ3	YDR179W-A	Protein with a potential role in tethering ER and vacuoles	physical	1	1	1	Affinity Capture-RNA
MND2	YIR025W	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
MED8	YBR193C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
YBR071W	YBR071W	Protein of unknown function found in the cytoplasm and bud neck	physical	1	1	1	Affinity Capture-RNA
MRPS17	YMR188C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
PRP38	YGR075C	Unique component of the U4/U6.U5 tri-snRNP particle	physical	1	1	1	Affinity Capture-RNA
PRP38	YGR075C	Unique component of the U4/U6.U5 tri-snRNP particle	genetic	1	1	1	Dosage Lethality
TFB3	YDR460W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	1	1	1	Affinity Capture-RNA
SPO7	YAL009W	Putative regulatory subunit of Nem1p-Spo7p phosphatase holoenzyme	physical	1	1	1	Affinity Capture-RNA
MRX19	YDL183C	Protein that may form an active mitochondrial KHE system	physical	1	1	1	Affinity Capture-RNA
ZPS1	YOL154W	Putative GPI-anchored protein	physical	1	1	1	Affinity Capture-RNA
YIA6	YIL006W	Mitochondrial NAD+ transporter	physical	1	1	1	Affinity Capture-RNA
QCR6	YFR033C	Subunit 6 of the ubiquinol cytochrome-c reductase complex	physical	1	1	1	Affinity Capture-RNA
MPO1	YGL010W	Dioxygenase that catalyzes alpha-oxygenation of 2-hydroxy fatty acids	physical	1	1	1	Affinity Capture-RNA
YGL185C	YGL185C	Putative protein with sequence similar to hydroxyacid dehydrogenases	physical	1	1	1	Affinity Capture-RNA
RLF2	YPR018W	Largest subunit (p90) of the Chromatin Assembly Complex (CAF-1)	physical	1	1	1	Affinity Capture-RNA
MHO1	YJR008W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DIA2	YOR080W	Origin-binding F-box protein	physical	1	1	1	Affinity Capture-RNA
MTW1	YAL034W-A	Essential component of the MIND kinetochore complex	physical	1	1	1	Affinity Capture-RNA
YGR035C	YGR035C	Putative protein of unknown function, potential Cdc28p substrate	physical	1	1	1	Affinity Capture-RNA
INO2	YDR123C	Transcription factor	physical	1	1	1	Affinity Capture-RNA
IMG2	YCR071C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
OST4	YDL232W	Subunit of the oligosaccharyltransferase complex of the ER lumen	physical	1	1	1	Affinity Capture-RNA
LRP1	YHR081W	Nuclear exosome-associated nucleic acid binding protein	physical	1	1	1	Affinity Capture-RNA
YPL113C	YPL113C	Glyoxylate reductase	physical	1	1	1	Affinity Capture-RNA
YOR131C	YOR131C	Putative haloacid dehalogenase-like hydrolase	physical	1	1	1	Affinity Capture-RNA
ICY1	YMR195W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YHC1	YLR298C	Component of the U1 snRNP complex required for pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
EAF7	YNL136W	Subunit of the NuA4 histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
MUM2	YBR057C	Protein essential for meiotic DNA replication and sporulation	physical	1	1	1	Affinity Capture-RNA
HIT1	YJR055W	Protein involved in C/D snoRNP assembly	physical	1	1	1	Affinity Capture-RNA
MET16	YPR167C	3'-phosphoadenylsulfate reductase	physical	1	1	1	Affinity Capture-RNA
YBL029W	YBL029W	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NSE4	YDL105W	Component of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
PUT7	YLR283W	Regulator of mitochondrial proline metabolism	physical	1	1	1	Affinity Capture-RNA
MFA1	YDR461W	Mating pheromone a-factor	physical	1	1	1	Affinity Capture-RNA
QRI5	YLR204W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
VID24	YBR105C	GID Complex regulatory subunit	physical	1	1	1	Affinity Capture-RNA
RMD6	YEL072W	Protein required for sporulation	physical	1	1	1	Affinity Capture-RNA
KAR1	YNL188W	Protein involved in karyogamy and spindle pole body duplication	physical	1	1	1	Affinity Capture-RNA
SRB5	YGR104C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
FYV4	YHR059W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRP10	YDL045W-A	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
WSC4	YHL028W	Endoplasmic reticulum (ER) membrane protein	physical	1	1	1	Affinity Capture-RNA
YJL107C	YJL107C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YJR154W	YJR154W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TOR2	YKL203C	PIK-related protein kinase and rapamycin target	physical	1	1	1	Affinity Capture-RNA
NFG1	YLR042C	Cell wall protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LIP2	YLR239C	Lipoyl ligase	physical	1	1	1	Affinity Capture-RNA
DUO1	YGL061C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
POP3	YNL282W	Subunit of both RNase MRP and nuclear RNase P	physical	1	1	1	Affinity Capture-RNA
SMB1	YER029C	Core Sm protein Sm B	physical	1	1	1	Affinity Capture-RNA
MIX14	YDR031W	Mitochondrial intermembrane space protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPC25	YER018C	Component of the kinetochore-associated Ndc80 complex	physical	1	1	1	Affinity Capture-RNA
YPL257W	YPL257W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PCL7	YIL050W	Pho85p cyclin of the Pho80p subfamily	physical	1	1	1	Affinity Capture-RNA
VPS64	YDR200C	Protein required for cytoplasm to vacuole targeting of proteins	physical	1	1	1	Affinity Capture-RNA
YIL161W	YIL161W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LSM8	YJR022W	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
PLP1	YDR183W	Protein that interacts with CCT (chaperonin containing TCP-1) complex	physical	1	1	1	Affinity Capture-RNA
HER2	YMR293C	Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex	physical	1	1	1	Affinity Capture-RNA
ECL1	YGR146C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRX8	YDR336W	Protein that associates with mitochondrial ribosome	physical	1	1	1	Affinity Capture-RNA
YKE2	YLR200W	Subunit of the heterohexameric Gim/prefoldin protein complex	physical	1	1	1	Affinity Capture-RNA
PHM6	YDR281C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LCL2	YLR104W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FUB1	YCR076C	Proteasome-binding protein	physical	1	1	1	Affinity Capture-RNA
DON1	YDR273W	Meiosis-specific component of the spindle pole body	physical	1	1	1	Affinity Capture-RNA
YGR153W	YGR153W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RDS3	YPR094W	Component of the SF3b subcomplex of the U2 snRNP	physical	1	1	1	Affinity Capture-RNA
YER079W	YER079W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MSS2	YDL107W	Peripherally bound inner membrane protein of the mitochondrial matrix	physical	1	1	1	Affinity Capture-RNA
PRP24	YMR268C	Splicing factor that reanneals snRNPs during spliceosome recycling	physical	1	1	1	Affinity Capture-RNA
OAZ1	YPL052W	Regulator of ornithine decarboxylase Spe1p	physical	1	1	1	Affinity Capture-RNA
VPS71	YML041C	Nucleosome-binding component of the SWR1 complex	physical	1	1	1	Affinity Capture-RNA
ECI1	YLR284C	Peroxisomal delta3,delta2-enoyl-CoA isomerase	physical	1	1	1	Affinity Capture-RNA
MZM1	YDR493W	Protein required for assembly of the cytochrome bc(1) complex	physical	1	1	1	Affinity Capture-RNA
HNT3	YOR258W	DNA 5' AMP hydrolase involved in DNA repair	physical	1	1	1	Affinity Capture-RNA
NYV1	YLR093C	v-SNARE component of the vacuolar SNARE complex	physical	1	1	1	Affinity Capture-RNA
MIC10	YCL057C-A	Conserved component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
EMC1	YCL045C	Member of conserved endoplasmic reticulum membrane complex	physical	1	1	1	Affinity Capture-RNA
PDI1	YCL043C	Protein disulfide isomerase	physical	1	1	1	Affinity Capture-RNA
GID7	YCL039W	Subunit of GID Complex that binds directly to central component Vid30p	physical	1	1	1	Affinity Capture-RNA
NFS1	YCL017C	Cysteine desulfurase involved in iron-sulfur cluster biogenesis	physical	1	1	1	Affinity Capture-RNA
SGF29	YCL010C	Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes	physical	1	1	1	Affinity Capture-RNA
ILV6	YCL009C	Regulatory subunit of acetolactate synthase	physical	1	1	1	Affinity Capture-RNA
YCP4	YCR004C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SRD1	YCR018C	Protein involved in the processing of pre-rRNA to mature rRNA	physical	1	1	1	Affinity Capture-RNA
HTL1	YCR020W-B	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
RIM1	YCR028C-A	ssDNA-binding protein essential for mitochondrial genome maintenance	physical	1	1	1	Affinity Capture-RNA
SYP1	YCR030C	Negative regulator of WASP-Arp23 complex	physical	1	1	1	Affinity Capture-RNA
SNT1	YCR033W	Set3C histone deacetylase scaffold	physical	1	1	1	Affinity Capture-RNA
ELO2	YCR034W	Fatty acid elongase, involved in sphingolipid biosynthesis	physical	1	1	1	Affinity Capture-RNA
RBK1	YCR036W	Ribokinase, phosphorylates ribose to ribose-5-phosphate	physical	1	1	1	Affinity Capture-RNA
IMG1	YCR046C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
THR4	YCR053W	Threonine synthase	physical	1	1	1	Affinity Capture-RNA
RSA4	YCR072C	Ribosomal large subunit (60S) assembly factor	physical	1	1	1	Affinity Capture-RNA
EMP47	YFL048C	Integral membrane component of ER-derived COPII-coated vesicles	physical	1	1	1	Affinity Capture-RNA
MOB2	YFL034C-B	Activator of Cbk1p kinase	physical	1	1	1	Affinity Capture-RNA
LPD1	YFL018C	Dihydrolipoamide dehydrogenase	physical	1	1	1	Affinity Capture-RNA
MDJ1	YFL016C	Co-chaperone that stimulates HSP70 protein Ssc1p ATPase activity	physical	1	1	1	Affinity Capture-RNA
HSP12	YFL014W	Plasma membrane protein involved in maintaining membrane organization	physical	1	1	1	Affinity Capture-RNA
MSH4	YFL003C	Protein involved in meiotic recombination	physical	1	1	1	Affinity Capture-RNA
FAR7	YFR008W	Protein involved in recovery from pheromone-induced cell cycle arrest	physical	1	1	1	Affinity Capture-RNA
GCN20	YFR009W	Positive regulator of the Gcn2p kinase activity	physical	1	1	1	Affinity Capture-RNA
LSB3	YFR024C-A	Protein containing a C-terminal SH3 domain	physical	1	1	1	Affinity Capture-RNA
RPL29	YFR032C-A	Ribosomal 60S subunit protein L29	physical	1	1	1	Affinity Capture-RNA
DUG1	YFR044C	Cys-Gly metallo-di-peptidase	physical	1	1	1	Affinity Capture-RNA
PRE4	YFR050C	Beta 7 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
RET2	YFR051C	Delta subunit of the coatomer complex (COPI)	physical	1	1	1	Affinity Capture-RNA
RPN12	YFR052W	Subunit of the 19S regulatory particle of the 26S proteasome lid	physical	1	1	1	Affinity Capture-RNA
GPI13	YLL031C	ER membrane localized phosphoryltransferase	physical	1	1	1	Affinity Capture-RNA
KNS1	YLL019C	Protein kinase involved in negative regulation of PolIII transcription	physical	1	1	1	Affinity Capture-RNA
EMC6	YLL014W	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
SOF1	YLL011W	Protein required for biogenesis of 40S (small) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
MMP1	YLL061W	High-affinity S-methylmethionine permease	physical	1	1	1	Affinity Capture-RNA
GTT2	YLL060C	Glutathione S-transferase capable of homodimerization	physical	1	1	1	Affinity Capture-RNA
FRE6	YLL051C	Putative ferric reductase with similarity to Fre2p	physical	1	1	1	Affinity Capture-RNA
YBT1	YLL048C	Transporter of the ATP-binding cassette (ABC) family	physical	1	1	1	Affinity Capture-RNA
DNM1	YLL001W	Dynamin-related GTPase involved in mitochondrial organization	physical	1	1	1	Affinity Capture-RNA
YLR001C	YLR001C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MEU1	YLR017W	Methylthioadenosine phosphorylase (MTAP)	physical	1	1	1	Affinity Capture-RNA
TRX1	YLR043C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Affinity Capture-RNA
MLO50	YLR049C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
EMA19	YLR050C	Integral ER membrane protein involved in protein sorting	physical	1	1	1	Affinity Capture-RNA
OSW2	YLR054C	Protein of unknown function reputedly involved in spore wall assembly	physical	1	1	1	Affinity Capture-RNA
ERG3	YLR056W	C-5 sterol desaturase	physical	1	1	1	Affinity Capture-RNA
REX2	YLR059C	3'-5' RNA exonuclease	physical	1	1	1	Affinity Capture-RNA
FRS1	YLR060W	Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
MEF1	YLR069C	Mitochondrial elongation factor involved in translational elongation	physical	1	1	1	Affinity Capture-RNA
EMP70	YLR083C	Protein with a role in cellular adhesion and filamentous growth	physical	1	1	1	Affinity Capture-RNA
SUL2	YLR092W	High affinity sulfate permease	physical	1	1	1	Affinity Capture-RNA
IOC2	YLR095C	Subunit of the Isw1b complex	physical	1	1	1	Affinity Capture-RNA
KIN2	YLR096W	S/T protein kinase	physical	1	1	1	Affinity Capture-RNA
ERG27	YLR100W	3-keto sterol reductase	physical	1	1	1	Affinity Capture-RNA
YPS1	YLR120C	Aspartic protease	physical	1	1	1	Affinity Capture-RNA
DPH6	YLR143W	Diphthamide synthetase	physical	1	1	1	Affinity Capture-RNA
SPE4	YLR146C	Spermine synthase	physical	1	1	1	Affinity Capture-RNA
PEP3	YLR148W	Component of CORVET membrane tethering complex	physical	1	1	1	Affinity Capture-RNA
DPH5	YLR172C	Methyltransferase required for synthesis of diphthamide	physical	1	1	1	Affinity Capture-RNA
TAG1	YLR173W	Vacuolar membrane protein involved in termination of autophagy	physical	1	1	1	Affinity Capture-RNA
RFX1	YLR176C	Major transcriptional repressor of DNA-damage-regulated genes	physical	1	1	1	Affinity Capture-RNA
TOS4	YLR183C	Putative transcription factor, contains Forkhead Associated domain	physical	1	1	1	Affinity Capture-RNA
MDL1	YLR188W	Mitochondrial inner membrane half-type ABC transporter	physical	1	1	1	Affinity Capture-RNA
HCR1	YLR192C	eIF3j component of translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
NCW2	YLR194C	GPI-anchored protein involved in cell wall remodeling	physical	1	1	1	Affinity Capture-RNA
NOP56	YLR197W	Essential evolutionarily-conserved nucleolar protein	physical	1	1	1	Affinity Capture-RNA
MSS51	YLR203C	Specific translational activator for the mitochondrial COX1 mRNA	physical	1	1	1	Affinity Capture-RNA
HMX1	YLR205C	ER localized heme oxygenase	physical	1	1	1	Affinity Capture-RNA
TUB4	YLR212C	Gamma-tubulin	physical	1	1	1	Affinity Capture-RNA
IRC20	YLR247C	E3 ubiquitin ligase and putative helicase	physical	1	1	1	Affinity Capture-RNA
RCK2	YLR248W	Protein kinase involved in response to oxidative and osmotic stress	physical	1	1	1	Affinity Capture-RNA
HAP1	YLR256W	Zinc finger transcription factor	physical	1	1	1	Affinity Capture-RNA
MCM5	YLR274W	Component of the Mcm2-7 hexameric helicase complex	physical	1	1	1	Affinity Capture-RNA
GCD7	YLR291C	Beta subunit of translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-RNA
STT4	YLR305C	Phosphatidylinositol-4-kinase	physical	1	1	1	Affinity Capture-RNA
MRPL15	YLR312W-A	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
SGD1	YLR336C	Essential nuclear protein	physical	1	1	1	Affinity Capture-RNA
VRP1	YLR337C	Verprolin, proline-rich actin-associated protein	physical	1	1	1	Affinity Capture-RNA
GRX8	YLR364W	Glutaredoxin that employs a dithiol mechanism of catalysis	physical	1	1	1	Affinity Capture-RNA
ELO3	YLR372W	Elongase	physical	1	1	1	Affinity Capture-RNA
VID22	YLR373C	G-quadruplex (G4) DNA binding protein	physical	1	1	1	Affinity Capture-RNA
SEC61	YLR378C	Conserved ER protein translocation channel	physical	1	1	1	Affinity Capture-RNA
IKI3	YLR384C	Subunit of Elongator complex	physical	1	1	1	Affinity Capture-RNA
RPS29A	YLR388W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
STE23	YLR389C	Metalloprotease	physical	1	1	1	Affinity Capture-RNA
SKI2	YLR398C	Ski complex component and putative RNA helicase	physical	1	1	1	Affinity Capture-RNA
DUS3	YLR401C	Dihydrouridine synthase	physical	1	1	1	Affinity Capture-RNA
SFP1	YLR403W	Regulates transcription of ribosomal protein and biogenesis genes	physical	1	1	1	Affinity Capture-RNA
VIP1	YLR410W	Bifunctional inositol pyrophosphate kinase and phosphatase	physical	1	1	1	Affinity Capture-RNA
YLR419W	YLR419W	Putative helicase with limited sequence similarity to human Rb protein	physical	1	1	1	Affinity Capture-RNA
SEN1	YLR430W	ATP-dependent 5' to 3' RNA/DNA and DNA helicase	physical	1	1	1	Affinity Capture-RNA
NBP1	YLR457C	Spindle pole body (SPB) component	physical	1	1	1	Affinity Capture-RNA
SNC1	YAL030W	Vesicle membrane receptor protein (v-SNARE)	physical	1	1	1	Affinity Capture-RNA
DRS2	YAL026C	Trans-golgi network aminophospholipid translocase (flippase)	physical	1	1	1	Affinity Capture-RNA
PMT2	YAL023C	Protein O-mannosyltransferase of the ER membrane	physical	1	1	1	Affinity Capture-RNA
TPD3	YAL016W	Regulatory subunit A of the heterotrimeric PP2A complex	physical	1	1	1	Affinity Capture-RNA
NTG1	YAL015C	DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase	physical	1	1	1	Affinity Capture-RNA
FLC2	YAL053W	Putative calcium channel involved in calcium release under hypotonic	physical	1	1	1	Affinity Capture-RNA
OAF1	YAL051W	Oleate-activated transcription factor	physical	1	1	1	Affinity Capture-RNA
GCV3	YAL044C	H subunit of the mitochondrial glycine decarboxylase complex	physical	1	1	1	Affinity Capture-RNA
TFC3	YAL001C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Affinity Capture-RNA
MST28	YAR033W	Putative integral membrane protein, involved in vesicle formation	physical	1	1	1	Affinity Capture-RNA
YAT1	YAR035W	Outer mitochondrial carnitine acetyltransferase	physical	1	1	1	Affinity Capture-RNA
SWH1	YAR042W	Protein similar to mammalian oxysterol-binding protein	physical	1	1	1	Affinity Capture-RNA
PHO11	YAR071W	One of three repressible acid phosphatases	physical	1	1	1	Affinity Capture-RNA
DTD1	YDL219W	D-Tyr-tRNA(Tyr) deacylase	physical	1	1	1	Affinity Capture-RNA
YDL218W	YDL218W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GGC1	YDL198C	Mitochondrial GTP/GDP transporter	physical	1	1	1	Affinity Capture-RNA
UFD2	YDL190C	Ubiquitin (Ub) chain assembly factor (E4)	physical	1	1	1	Affinity Capture-RNA
HO	YDL227C	Site-specific endonuclease	physical	1	1	1	Affinity Capture-RNA
GCS1	YDL226C	ADP-ribosylation factor GTPase activating protein (ARF GAP)	physical	1	1	1	Affinity Capture-RNA
SHS1	YDL225W	Component of the septin ring that is required for cytokinesis	physical	1	1	1	Affinity Capture-RNA
GLT1	YDL171C	NAD(+)-dependent glutamate synthase (GOGAT)	physical	1	1	1	Affinity Capture-RNA
RPN5	YDL147W	Subunit of the CSN and 26S proteasome lid complexes	physical	1	1	1	Affinity Capture-RNA
YDL144C	YDL144C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPP1B	YDL130W	Ribosomal protein P1 beta	physical	1	1	1	Affinity Capture-RNA
VCX1	YDL128W	Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity	physical	1	1	1	Affinity Capture-RNA
TRM3	YDL112W	2'-O-ribose methyltransferase	physical	1	1	1	Affinity Capture-RNA
POL3	YDL102W	Catalytic subunit of DNA polymerase delta	physical	1	1	1	Affinity Capture-RNA
GET3	YDL100C	Guanine nucleotide exchange factor for Gpa1p	physical	1	1	1	Affinity Capture-RNA
RPN6	YDL097C	Essential, non-ATPase regulatory subunit of the 26S proteasome lid	physical	1	1	1	Affinity Capture-RNA
PMT1	YDL095W	Protein O-mannosyltransferase of the ER membrane	physical	1	1	1	Affinity Capture-RNA
RPP1A	YDL081C	Ribosomal stalk protein P1 alpha	physical	1	1	1	Affinity Capture-RNA
MDH3	YDL078C	Peroxisomal malate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
IDP1	YDL066W	Mitochondrial NADP-specific isocitrate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
YDL057W	YDL057W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SLC1	YDL052C	1-acyl-sn-glycerol-3-phosphate acyltransferase	physical	1	1	1	Affinity Capture-RNA
LHP1	YDL051W	RNA binding protein required for maturation of tRNA and U6 snRNA	physical	1	1	1	Affinity Capture-RNA
NPC2	YDL046W	Sterol transport protein and functional homolog of human NPC2/He1	physical	1	1	1	Affinity Capture-RNA
NAT1	YDL040C	Subunit of protein N-terminal acetyltransferase NatA	physical	1	1	1	Affinity Capture-RNA
PRM7	YDL039C	Pheromone-regulated protein	physical	1	1	1	Affinity Capture-RNA
OSH2	YDL019C	Member of an oxysterol-binding protein family with seven members	physical	1	1	1	Affinity Capture-RNA
RPT2	YDL007W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-RNA
GCV1	YDR019C	T subunit of the mitochondrial glycine decarboxylase complex	physical	1	1	1	Affinity Capture-RNA
PST2	YDR032C	FMN-dependent NAD(P)H:quinone oxidoreductase	physical	1	1	1	Affinity Capture-RNA
EHD3	YDR036C	3-hydroxyisobutyryl-CoA hydrolase	physical	1	1	1	Affinity Capture-RNA
ENA5	YDR038C	Protein with similarity to P-type ATPase sodium pumps	physical	1	1	1	Affinity Capture-RNA
ENA2	YDR039C	P-type ATPase sodium pump	physical	1	1	1	Affinity Capture-RNA
ENA1	YDR040C	P-type ATPase sodium pump	physical	1	1	1	Affinity Capture-RNA
HEM13	YDR044W	Coproporphyrinogen III oxidase	physical	1	1	1	Affinity Capture-RNA
PST1	YDR055W	Cell wall protein that contains a putative GPI-attachment site	physical	1	1	1	Affinity Capture-RNA
MAK21	YDR060W	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
OCA6	YDR067C	Cytoplasmic protein required for replication of Brome mosaic virus	physical	1	1	1	Affinity Capture-RNA
DOA4	YDR069C	Ubiquitin hydrolase	physical	1	1	1	Affinity Capture-RNA
STN1	YDR082W	Telomere end-binding and capping protein	physical	1	1	1	Affinity Capture-RNA
TVP23	YDR084C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
SLU7	YDR088C	RNA splicing factor	physical	1	1	1	Affinity Capture-RNA
DNF2	YDR093W	Aminophospholipid translocase (flippase)	physical	1	1	1	Affinity Capture-RNA
GIS1	YDR096W	Histone demethylase and transcription factor	physical	1	1	1	Affinity Capture-RNA
GRX3	YDR098C	Glutathione-dependent oxidoreductase	physical	1	1	1	Affinity Capture-RNA
STE5	YDR103W	Pheromone-responsive MAPK scaffold protein	physical	1	1	1	Affinity Capture-RNA
VBA4	YDR119W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SAC6	YDR129C	Fimbrin, actin-bundling protein	physical	1	1	1	Affinity Capture-RNA
YCF1	YDR135C	Vacuolar glutathione S-conjugate transporter	physical	1	1	1	Affinity Capture-RNA
DOP1	YDR141C	Protein involved in vesicular transport at trans-Golgi network (TGN)	physical	1	1	1	Affinity Capture-RNA
MKC7	YDR144C	GPI-anchored aspartyl protease	physical	1	1	1	Affinity Capture-RNA
KGD2	YDR148C	Dihydrolipoyl transsuccinylase	physical	1	1	1	Affinity Capture-RNA
HOM2	YDR158W	Aspartic beta semi-aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-RNA
SAC3	YDR159W	mRNA export factor	physical	1	1	1	Affinity Capture-RNA
HSP42	YDR171W	Small heat shock protein (sHSP) with chaperone activity	physical	1	1	1	Affinity Capture-RNA
UBC1	YDR177W	Ubiquitin-conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
SCC2	YDR180W	Subunit of cohesin loading factor (Scc2p-Scc4p)	physical	1	1	1	Affinity Capture-RNA
SLY1	YDR189W	Hydrophilic protein involved in ER/Golgi vesicle trafficking	physical	1	1	1	Affinity Capture-RNA
RAV2	YDR202C	Subunit of RAVE complex (Rav1p, Rav2p, Skp1p)	physical	1	1	1	Affinity Capture-RNA
MSC2	YDR205W	Endoplasmic reticulum zinc transporter	physical	1	1	1	Affinity Capture-RNA
GCD6	YDR211W	Catalytic epsilon subunit of the translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-RNA
HEM1	YDR232W	5-aminolevulinate synthase	physical	1	1	1	Affinity Capture-RNA
LYS4	YDR234W	Homoaconitase	physical	1	1	1	Affinity Capture-RNA
SEC26	YDR238C	Essential beta-coat protein of the COPI coatomer	physical	1	1	1	Affinity Capture-RNA
RRP45	YDR280W	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-RNA
SRP101	YDR292C	Signal recognition particle (SRP) receptor alpha subunit	physical	1	1	1	Affinity Capture-RNA
DPL1	YDR294C	Dihydrosphingosine phosphate lyase	physical	1	1	1	Affinity Capture-RNA
DPL1	YDR294C	Dihydrosphingosine phosphate lyase	genetic	1	1	1	Synthetic Rescue
PFU1	YDR306C	F-box protein that regulates pheromone-dependent morphogenesis	physical	1	1	1	Affinity Capture-RNA
IPK1	YDR315C	Inositol 1,3,4,5,6-pentakisphosphate 2-kinase	physical	1	1	1	Affinity Capture-RNA
IPK1	YDR315C	Inositol 1,3,4,5,6-pentakisphosphate 2-kinase	genetic	1	1	1	Dosage Rescue
SWA2	YDR320C	Auxilin-like protein involved in vesicular transport	physical	1	1	1	Affinity Capture-RNA
GPI8	YDR331W	Catalytic subunit of the ER membrane GPI transamidase complex	physical	1	1	1	Affinity Capture-RNA
RQC1	YDR333C	Component of the ribosome quality control complex (RQC)	physical	1	1	1	Affinity Capture-RNA
SWR1	YDR334W	Swi2/Snf2-related ATPase	physical	1	1	1	Affinity Capture-RNA
YDR341C	YDR341C	Arginyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
HXT7	YDR342C	High-affinity glucose transporter	physical	1	1	1	Affinity Capture-RNA
HXT6	YDR343C	High-affinity glucose transporter	physical	1	1	1	Affinity Capture-RNA
HXT3	YDR345C	Low affinity glucose transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
SVF1	YDR346C	Protein with a potential role in cell survival pathways	physical	1	1	1	Affinity Capture-RNA
MRP1	YDR347W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
YPS7	YDR349C	Putative GPI-anchored aspartic protease	physical	1	1	1	Affinity Capture-RNA
TRR1	YDR353W	Cytoplasmic thioredoxin reductase	physical	1	1	1	Affinity Capture-RNA
KEI1	YDR367W	Component of inositol phosphorylceramide (IPC) synthase	physical	1	1	1	Affinity Capture-RNA
YPR1	YDR368W	NADPH-dependent aldo-keto reductase	physical	1	1	1	Affinity Capture-RNA
VPS74	YDR372C	Golgi PI4K effector, PtdIns4P sensor, and retention receptor	physical	1	1	1	Affinity Capture-RNA
RPP2B	YDR382W	Ribosomal protein P2 beta	physical	1	1	1	Affinity Capture-RNA
SXM1	YDR395W	Nuclear transport factor (karyopherin)	physical	1	1	1	Affinity Capture-RNA
HPT1	YDR399W	Dimeric hypoxanthine-guanine phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
URH1	YDR400W	Uridine nucleosidase (uridine-cytidine N-ribohydrolase)	physical	1	1	1	Affinity Capture-RNA
ERD1	YDR414C	Predicted membrane protein required for lumenal ER protein retention	physical	1	1	1	Affinity Capture-RNA
LRS4	YDR439W	Nucleolar protein that forms a complex with Csm1p	physical	1	1	1	Affinity Capture-RNA
SSN2	YDR443C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
NHX1	YDR456W	Na+/H+ and K+/H+ exchanger	physical	1	1	1	Affinity Capture-RNA
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	physical	1	1	1	Affinity Capture-RNA
SNF1	YDR477W	AMP-activated S/T protein kinase	physical	1	1	1	Affinity Capture-RNA
PHO8	YDR481C	Repressible vacuolar alkaline phosphatase	physical	1	1	1	Affinity Capture-RNA
IZH1	YDR492W	Membrane protein involved in zinc ion homeostasis	physical	1	1	1	Affinity Capture-RNA
VPS3	YDR495C	Component of CORVET membrane tethering complex	physical	1	1	1	Affinity Capture-RNA
ITR1	YDR497C	Myo-inositol transporter	physical	1	1	1	Affinity Capture-RNA
GNP1	YDR508C	Broad specificity amino acid permease	physical	1	1	1	Affinity Capture-RNA
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	physical	1	1	1	Affinity Capture-RNA
SNA2	YDR525W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FIT1	YDR534C	Mannoprotein that is incorporated into the cell wall	physical	1	1	1	Affinity Capture-RNA
FDC1	YDR539W	Ferulic acid decarboxylase	physical	1	1	1	Affinity Capture-RNA
ROX3	YBL093C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MAP2	YBL091C	Methionine aminopeptidase	physical	1	1	1	Affinity Capture-RNA
NUP170	YBL079W	Subunit of inner ring of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-RNA
PRS4	YBL068W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP	physical	1	1	1	Affinity Capture-RNA
YEL1	YBL060W	Guanine nucleotide exchange factor specific for Arf3p	physical	1	1	1	Affinity Capture-RNA
SHP1	YBL058W	UBX domain-containing substrate adaptor for Cdc48p	physical	1	1	1	Affinity Capture-RNA
YBL055C	YBL055C	3'-->5' exonuclease and endonuclease with a possible role in apoptosis	physical	1	1	1	Affinity Capture-RNA
SEC17	YBL050W	Alpha-SNAP cochaperone	physical	1	1	1	Affinity Capture-RNA
EDE1	YBL047C	Scaffold protein involved in the formation of early endocytic sites	physical	1	1	1	Affinity Capture-RNA
PRE7	YBL041W	Beta 6 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
URA7	YBL039C	Major CTP synthase isozyme (see also URA8)	physical	1	1	1	Affinity Capture-RNA
YBL036C	YBL036C	Putative non-specific single-domain racemase	physical	1	1	1	Affinity Capture-RNA
RIB1	YBL033C	GTP cyclohydrolase II	physical	1	1	1	Affinity Capture-RNA
PIM1	YBL022C	ATP-dependent Lon protease	physical	1	1	1	Affinity Capture-RNA
PEP1	YBL017C	Type I transmembrane sorting receptor for multiple vacuolar hydrolases	physical	1	1	1	Affinity Capture-RNA
SLA1	YBL007C	Cytoskeletal protein binding protein	physical	1	1	1	Affinity Capture-RNA
PDR3	YBL005W	Transcriptional activator of the pleiotropic drug resistance network	physical	1	1	1	Affinity Capture-RNA
UTP20	YBL004W	Component of the small-subunit (SSU) processome	physical	1	1	1	Affinity Capture-RNA
ECM15	YBL001C	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FLR1	YBR008C	Plasma membrane transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
GRX7	YBR014C	Cis-golgi localized monothiol glutaredoxin	physical	1	1	1	Affinity Capture-RNA
MNN2	YBR015C	Alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
KAP104	YBR017C	Transportin or cytosolic karyopherin beta 2	physical	1	1	1	Affinity Capture-RNA
PDX3	YBR035C	Pyridoxine (pyridoxamine) phosphate oxidase	physical	1	1	1	Affinity Capture-RNA
FIG1	YBR040W	Integral membrane protein required for efficient mating	physical	1	1	1	Affinity Capture-RNA
RFS1	YBR052C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRX18	YBR056W	Putative glycoside hydrolase of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
TRM7	YBR061C	2'-O-ribose methyltransferase	physical	1	1	1	Affinity Capture-RNA
TIP1	YBR067C	Major cell wall mannoprotein with possible lipase activity	physical	1	1	1	Affinity Capture-RNA
HSP26	YBR072W	Small heat shock protein (sHSP) with chaperone activity	physical	1	1	1	Affinity Capture-RNA
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	physical	1	1	1	Affinity Capture-RNA
YBR085C-A	YBR085C-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
POL30	YBR088C	Proliferating cell nuclear antigen (PCNA)	physical	1	1	1	Affinity Capture-RNA
NHP6B	YBR089C-A	High-mobility group (HMG) protein	physical	1	1	1	Affinity Capture-RNA
YBR090C	YBR090C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TIM12	YBR091C	Essential protein of the inner mitochondrial membrane	physical	1	1	1	Affinity Capture-RNA
PHO3	YBR092C	Constitutively expressed acid phosphatase similar to Pho5p	physical	1	1	1	Affinity Capture-RNA
PHO5	YBR093C	Repressible acid phosphatase	physical	1	1	1	Affinity Capture-RNA
SND3	YBR106W	Involved in SRP-independent protein targeting to the ER	physical	1	1	1	Affinity Capture-RNA
YSA1	YBR111C	Nudix hydrolase family member with ADP-ribose pyrophosphatase activity	physical	1	1	1	Affinity Capture-RNA
TPS1	YBR126C	Synthase subunit of trehalose-6-P synthase/phosphatase complex	physical	1	1	1	Affinity Capture-RNA
IRA1	YBR140C	GTPase-activating protein	physical	1	1	1	Affinity Capture-RNA
MAK5	YBR142W	Essential nucleolar protein	physical	1	1	1	Affinity Capture-RNA
SUP45	YBR143C	Polypeptide release factor (eRF1) in translation termination	physical	1	1	1	Affinity Capture-RNA
YSW1	YBR148W	Protein required for normal prospore membrane formation	physical	1	1	1	Affinity Capture-RNA
RPB5	YBR154C	RNA polymerase subunit ABC27	physical	1	1	1	Affinity Capture-RNA
IFA38	YBR159W	Microsomal beta-keto-reductase	physical	1	1	1	Affinity Capture-RNA
SEC66	YBR171W	Non-essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-RNA
ECM31	YBR176W	Ketopantoate hydroxymethyltransferase	physical	1	1	1	Affinity Capture-RNA
MSI1	YBR195C	Subunit of chromatin assembly factor I (CAF-1)	physical	1	1	1	Affinity Capture-RNA
DUR12	YBR208C	Urea amidolyase	physical	1	1	1	Affinity Capture-RNA
PYC2	YBR218C	Pyruvate carboxylase isoform	physical	1	1	1	Affinity Capture-RNA
YBR219C	YBR219C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VHC1	YBR235W	Vacuolar membrane cation-chloride cotransporter (CCC)	physical	1	1	1	Affinity Capture-RNA
GPX2	YBR244W	Phospholipid hydroperoxide glutathione peroxidase	physical	1	1	1	Affinity Capture-RNA
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	physical	1	1	1	Affinity Capture-RNA
HIS7	YBR248C	Imidazole glycerol phosphate synthase	physical	1	1	1	Affinity Capture-RNA
SSH1	YBR283C	Subunit of the Ssh1 translocon complex	physical	1	1	1	Affinity Capture-RNA
SAP4	YGL229C	Protein required for function of the Sit4p protein phosphatase	physical	1	1	1	Affinity Capture-RNA
VID30	YGL227W	Central component of GID Complex, involved in FBPase degradation	physical	1	1	1	Affinity Capture-RNA
OST5	YGL226C-A	Zeta subunit of the oligosaccharyltransferase complex of the ER lumen	physical	1	1	1	Affinity Capture-RNA
VRG4	YGL225W	Golgi GDP-mannose transporter	physical	1	1	1	Affinity Capture-RNA
YPT32	YGL210W	Rab family GTPase involved in the exocytic pathway	physical	1	1	1	Affinity Capture-RNA
SPT16	YGL207W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	1	1	1	Affinity Capture-RNA
EMP24	YGL200C	Component of the p24 complex	physical	1	1	1	Affinity Capture-RNA
RPS26A	YGL189C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
ROK1	YGL171W	RNA-dependent ATPase	physical	1	1	1	Affinity Capture-RNA
SUA5	YGL169W	Protein involved in threonylcarbamoyl adenosine biosynthesis	physical	1	1	1	Affinity Capture-RNA
PMR1	YGL167C	High affinity Ca2+/Mn2+ P-type ATPase	physical	1	1	1	Affinity Capture-RNA
YGL159W	YGL159W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NUT1	YGL151W	Component of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
INO80	YGL150C	Nucleosome spacing factor	physical	1	1	1	Affinity Capture-RNA
MET13	YGL125W	Major isozyme of methylenetetrahydrofolate reductase	physical	1	1	1	Affinity Capture-RNA
PRP43	YGL120C	RNA helicase in the DEAH-box family	physical	1	1	1	Affinity Capture-RNA
YGL117W	YGL117W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SNF4	YGL115W	Activating gamma subunit of the AMP-activated Snf1p kinase complex	physical	1	1	1	Affinity Capture-RNA
NSA1	YGL111W	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
MLC1	YGL106W	Essential light chain for Myo1p	physical	1	1	1	Affinity Capture-RNA
SEH1	YGL100W	Subunit of the Nup84 nuclear pore and SEACAT subcomplexes	physical	1	1	1	Affinity Capture-RNA
NUP145	YGL092W	Essential protein with distinct roles in two nuclear pore subcomplexes	physical	1	1	1	Affinity Capture-RNA
GUP1	YGL084C	Plasma membrane protein involved in remodeling GPI anchors	physical	1	1	1	Affinity Capture-RNA
MNP1	YGL068W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRH4	YGL064C	Mitochondrial ATP-dependent RNA helicase of the DEAD-box family	physical	1	1	1	Affinity Capture-RNA
PYC1	YGL062W	Pyruvate carboxylase isoform	physical	1	1	1	Affinity Capture-RNA
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-RNA
RIM8	YGL045W	Protein involved in proteolytic activation of Rim101p	physical	1	1	1	Affinity Capture-RNA
HEM2	YGL040C	Aminolevulinate dehydratase	physical	1	1	1	Affinity Capture-RNA
TRP5	YGL026C	Tryptophan synthase	physical	1	1	1	Affinity Capture-RNA
KAP122	YGL016W	Karyopherin beta	physical	1	1	1	Affinity Capture-RNA
ERG4	YGL012W	C-24(28) sterol reductase	physical	1	1	1	Affinity Capture-RNA
EFM5	YGR001C	S-adenosylmethionine-dependent lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
MSB2	YGR014W	Mucin family member involved in various signaling pathways	physical	1	1	1	Affinity Capture-RNA
VMA7	YGR020C	Subunit F of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-RNA
YGR026W	YGR026W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GSC2	YGR032W	Catalytic subunit of 1,3-beta-glucan synthase	physical	1	1	1	Affinity Capture-RNA
TFC4	YGR047C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Affinity Capture-RNA
ERG25	YGR060W	C-4 methyl sterol oxidase	physical	1	1	1	Affinity Capture-RNA
TOM20	YGR082W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
GCD2	YGR083C	Delta subunit of the translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-RNA
PDC6	YGR087C	Minor isoform of pyruvate decarboxylase	physical	1	1	1	Affinity Capture-RNA
UTP22	YGR090W	Component of the small-subunit processome	physical	1	1	1	Affinity Capture-RNA
VAS1	YGR094W	Mitochondrial and cytoplasmic valyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
TPC1	YGR096W	Mitochondrial membrane transporter	physical	1	1	1	Affinity Capture-RNA
NOP7	YGR103W	Component of several different pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
VOA1	YGR106C	ER protein that functions in assembly of the V0 sector of V-ATPase	physical	1	1	1	Affinity Capture-RNA
SPT6	YGR116W	Nucleosome remodeling protein	physical	1	1	1	Affinity Capture-RNA
PPT1	YGR123C	Protein serine/threonine phosphatase	physical	1	1	1	Affinity Capture-RNA
UTP8	YGR128C	Nucleolar protein required for export of tRNAs from the nucleus	physical	1	1	1	Affinity Capture-RNA
FHN1	YGR131W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ENP2	YGR145W	Component of the SSU	physical	1	1	1	Affinity Capture-RNA
NSR1	YGR159C	Nucleolin, nucleolar protein that binds nuclear localization sequences	physical	1	1	1	Affinity Capture-RNA
PSD2	YGR170W	Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes	physical	1	1	1	Affinity Capture-RNA
RBG2	YGR173W	Protein with a role in translation	physical	1	1	1	Affinity Capture-RNA
RNR4	YGR180C	Ribonucleotide-diphosphate reductase (RNR) small subunit	physical	1	1	1	Affinity Capture-RNA
UBR1	YGR184C	E3 ubiquitin ligase (N-recognin)	physical	1	1	1	Affinity Capture-RNA
SKI6	YGR195W	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-RNA
YPP1	YGR198W	Cargo-transport protein involved in endocytosis	physical	1	1	1	Affinity Capture-RNA
SER2	YGR208W	Phosphoserine phosphatase of the phosphoglycerate pathway	physical	1	1	1	Affinity Capture-RNA
ZPR1	YGR211W	Essential protein with two zinc fingers	physical	1	1	1	Affinity Capture-RNA
SLI1	YGR212W	N-acetyltransferase	physical	1	1	1	Affinity Capture-RNA
PHB2	YGR231C	Subunit of the prohibitin complex (Phb1p-Phb2p)	physical	1	1	1	Affinity Capture-RNA
NAS6	YGR232W	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	1	1	1	Affinity Capture-RNA
SPG1	YGR236C	Protein required for high temperature survival during stationary phase	physical	1	1	1	Affinity Capture-RNA
PEX21	YGR239C	Peroxin required for peroxisomal matrix protein targeting	physical	1	1	1	Affinity Capture-RNA
YGR266W	YGR266W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RTT102	YGR275W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	physical	1	1	1	Affinity Capture-RNA
YOR1	YGR281W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-RNA
ERV29	YGR284C	Protein localized to COPII-coated vesicles	physical	1	1	1	Affinity Capture-RNA
ZUO1	YGR285C	Ribosome-associated chaperone	physical	1	1	1	Affinity Capture-RNA
OPT1	YJL212C	Proton-coupled oligopeptide transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
LAA1	YJL207C	AP-1 accessory protein	physical	1	1	1	Affinity Capture-RNA
RCY1	YJL204C	F-box protein involved in recycling endocytosed proteins	physical	1	1	1	Affinity Capture-RNA
REE1	YJL217W	Cytoplasmic protein involved in the regulation of enolase (ENO1)	physical	1	1	1	Affinity Capture-RNA
PHO90	YJL198W	Low-affinity phosphate transporter	physical	1	1	1	Affinity Capture-RNA
RPS14B	YJL191W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
MNN5	YJL186W	Alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
ERG20	YJL167W	Farnesyl pyrophosphate synthetase	physical	1	1	1	Affinity Capture-RNA
SSY5	YJL156C	Serine protease of SPS plasma membrane amino acid sensor system	physical	1	1	1	Affinity Capture-RNA
VPS35	YJL154C	Endosomal subunit of membrane-associated retromer complex	physical	1	1	1	Affinity Capture-RNA
SNA3	YJL151C	Protein involved in efficient MVB sorting of proteins to the vacuole	physical	1	1	1	Affinity Capture-RNA
GCD14	YJL125C	Subunit of tRNA (1-methyladenosine) methyltransferase	physical	1	1	1	Affinity Capture-RNA
PHO86	YJL117W	Endoplasmic reticulum (ER) resident protein	physical	1	1	1	Affinity Capture-RNA
MDV1	YJL112W	Peripheral protein of cytosolic face of mitochondrial outer membrane	physical	1	1	1	Affinity Capture-RNA
UTP10	YJL109C	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
GSH1	YJL101C	Gamma glutamylcysteine synthetase	physical	1	1	1	Affinity Capture-RNA
GWT1	YJL091C	Protein involved in the inositol acylation of GlcN-PI	physical	1	1	1	Affinity Capture-RNA
TRL1	YJL087C	tRNA ligase	physical	1	1	1	Affinity Capture-RNA
EXO70	YJL085W	Subunit of the exocyst complex	physical	1	1	1	Affinity Capture-RNA
PRY3	YJL078C	GPI-anchored cell wall protein involved in export of sterols	physical	1	1	1	Affinity Capture-RNA
NET1	YJL076W	Core subunit of the RENT complex	physical	1	1	1	Affinity Capture-RNA
UTP18	YJL069C	Small-subunit processome protein involved in pre-18S rRNA maturation	physical	1	1	1	Affinity Capture-RNA
YJL068C	YJL068C	Esterase that can function as an S-formylglutathione hydrolase	physical	1	1	1	Affinity Capture-RNA
NUP82	YJL061W	Linker nucleoporin component of the nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-RNA
MTR4	YJL050W	RNA duplex-sensing translocase	physical	1	1	1	Affinity Capture-RNA
MHP1	YJL042W	Microtubule-associated protein involved in microtubule organization	physical	1	1	1	Affinity Capture-RNA
NSP1	YJL041W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-RNA
RNR2	YJL026W	Ribonucleotide-diphosphate reductase (RNR), small subunit	physical	1	1	1	Affinity Capture-RNA
VTC4	YJL012C	Vacuolar membrane polyphosphate polymerase	physical	1	1	1	Affinity Capture-RNA
NOP9	YJL010C	Essential subunit of U3-containing 90S preribosome	physical	1	1	1	Affinity Capture-RNA
PRE3	YJL001W	Beta 1 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
MRX12	YJR003C	Protein that associates with mitochondrial ribosome	physical	1	1	1	Affinity Capture-RNA
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	physical	1	1	1	Affinity Capture-RNA
MDE1	YJR024C	5'-methylthioribulose-1-phosphate dehydratase	physical	1	1	1	Affinity Capture-RNA
RAV1	YJR033C	Subunit of RAVE complex (Rav1p, Rav2p, Skp1p)	physical	1	1	1	Affinity Capture-RNA
NUP85	YJR042W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-RNA
TAH11	YJR046W	DNA replication licensing factor	physical	1	1	1	Affinity Capture-RNA
RAD7	YJR052W	Nucleotide excision repair (NER) protein	physical	1	1	1	Affinity Capture-RNA
NTA1	YJR062C	Amidase	physical	1	1	1	Affinity Capture-RNA
RFC2	YJR068W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Affinity Capture-RNA
HOC1	YJR075W	Alpha-1,6-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
STE18	YJR086W	G protein gamma subunit	physical	1	1	1	Affinity Capture-RNA
EMC2	YJR088C	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	physical	1	1	1	Affinity Capture-RNA
YMR1	YJR110W	Phosphatidylinositol 3-phosphate (PI3P) phosphatase	physical	1	1	1	Affinity Capture-RNA
STE24	YJR117W	Highly conserved zinc metalloprotease	physical	1	1	1	Affinity Capture-RNA
YJR120W	YJR120W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
IBA57	YJR122W	Protein involved in incorporating iron-sulfur clusters into proteins	physical	1	1	1	Affinity Capture-RNA
ENT3	YJR125C	Protein containing an N-terminal epsin-like domain	physical	1	1	1	Affinity Capture-RNA
VPS70	YJR126C	Protein of unknown function involved in vacuolar protein sorting	physical	1	1	1	Affinity Capture-RNA
NMD5	YJR132W	Karyopherin	physical	1	1	1	Affinity Capture-RNA
XPT1	YJR133W	Xanthine-guanine phosphoribosyl transferase	physical	1	1	1	Affinity Capture-RNA
SGM1	YJR134C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TIM8	YJR135W-A	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
IPA1	YJR141W	Protein implicated in pre-mRNA processing and proteasomal degradation	physical	1	1	1	Affinity Capture-RNA
PMT4	YJR143C	Protein O-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
RPS4A	YJR145C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
HMS2	YJR147W	Protein with similarity to heat shock transcription factors	physical	1	1	1	Affinity Capture-RNA
YJR149W	YJR149W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LOS1	YKL205W	Nuclear pore protein	physical	1	1	1	Affinity Capture-RNA
DPH2	YKL191W	Protein required for synthesis of diphthamide	physical	1	1	1	Affinity Capture-RNA
PRS1	YKL181W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Affinity Capture-RNA
URA1	YKL216W	Dihydroorotate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
TRP3	YKL211C	Indole-3-glycerol-phosphate synthase	physical	1	1	1	Affinity Capture-RNA
SNU114	YKL173W	GTPase component of U5 snRNP involved in mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-RNA
MRPL31	YKL138C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
PMU1	YKL128C	Putative phosphomutase	physical	1	1	1	Affinity Capture-RNA
PGM1	YKL127W	Phosphoglucomutase, minor isoform	physical	1	1	1	Affinity Capture-RNA
YPK1	YKL126W	S/T protein kinase	physical	1	1	1	Affinity Capture-RNA
RRN3	YKL125W	Protein required for transcription of rDNA by RNA polymerase I	physical	1	1	1	Affinity Capture-RNA
OAC1	YKL120W	Mitochondrial inner membrane transporter	physical	1	1	1	Affinity Capture-RNA
SBA1	YKL117W	Co-chaperone that binds and regulates Hsp90 family chaperones	physical	1	1	1	Affinity Capture-RNA
SLD2	YKL108W	Single-stranded DNA origin-binding and annealing protein	physical	1	1	1	Affinity Capture-RNA
HSL1	YKL101W	Nim1p-related protein kinase	physical	1	1	1	Affinity Capture-RNA
YPF1	YKL100C	Intramembrane aspartyl protease of the perinuclear ER membrane	physical	1	1	1	Affinity Capture-RNA
MIF2	YKL089W	Centromeric CDEIII region binding protein	physical	1	1	1	Affinity Capture-RNA
SRX1	YKL086W	Sulfiredoxin	physical	1	1	1	Affinity Capture-RNA
MDH1	YKL085W	Mitochondrial malate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
HOT13	YKL084W	Zinc-binding mitochondrial intermembrane space (IMS) protein	physical	1	1	1	Affinity Capture-RNA
PSG1	YKL077W	Protein that promotes the transport and maturation of Pma1 with Exp1	physical	1	1	1	Affinity Capture-RNA
LHS1	YKL073W	Molecular chaperone of the endoplasmic reticulum lumen	physical	1	1	1	Affinity Capture-RNA
STB6	YKL072W	Protein that binds Sin3p in a two-hybrid assay	physical	1	1	1	Affinity Capture-RNA
YKL069W	YKL069W	Methionine-R-sulfoxide reductase	physical	1	1	1	Affinity Capture-RNA
YNK1	YKL067W	Nucleoside diphosphate kinase	physical	1	1	1	Affinity Capture-RNA
YKL063C	YKL063C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NUP120	YKL057C	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-RNA
OAR1	YKL055C	Mitochondrial 3-oxoacyl-[acyl-carrier-protein] reductase	physical	1	1	1	Affinity Capture-RNA
MDM35	YKL053C-A	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
SFK1	YKL051W	Protein that regulates phospholipid asymmetry at plasma membrane	physical	1	1	1	Affinity Capture-RNA
PHD1	YKL043W	Transcriptional activator that enhances pseudohyphal growth	physical	1	1	1	Affinity Capture-RNA
SPC42	YKL042W	Central plaque component of spindle pole body (SPB)	physical	1	1	1	Affinity Capture-RNA
PTM1	YKL039W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YKL033W-A	YKL033W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MAE1	YKL029C	Mitochondrial malic enzyme	physical	1	1	1	Affinity Capture-RNA
TCD2	YKL027W	tRNA threonylcarbamoyladenosine dehydratase	physical	1	1	1	Affinity Capture-RNA
GPX1	YKL026C	Phospholipid hydroperoxide glutathione peroxidase	physical	1	1	1	Affinity Capture-RNA
PAN3	YKL025C	Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex	physical	1	1	1	Affinity Capture-RNA
URA6	YKL024C	Uridylate kinase	physical	1	1	1	Affinity Capture-RNA
RAM2	YKL019W	Alpha subunit of farnesyltransferase and geranylgeranyltransferase-I	physical	1	1	1	Affinity Capture-RNA
PUT3	YKL015W	Transcriptional activator	physical	1	1	1	Affinity Capture-RNA
UFD4	YKL010C	Ubiquitin-protein ligase (E3)	physical	1	1	1	Affinity Capture-RNA
LAC1	YKL008C	Ceramide synthase component	physical	1	1	1	Affinity Capture-RNA
YKR005C	YKR005C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRPL13	YKR006C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
PRY2	YKR013W	Sterol binding protein involved in the export of acetylated sterols	physical	1	1	1	Affinity Capture-RNA
YPT52	YKR014C	Endosomal Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
YKR018C	YKR018C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPO14	YKR031C	Phospholipase D	physical	1	1	1	Affinity Capture-RNA
DID2	YKR035W-A	Class E protein of the vacuolar protein-sorting (Vps) pathway	physical	1	1	1	Affinity Capture-RNA
GAP1	YKR039W	General amino acid permease	physical	1	1	1	Affinity Capture-RNA
NAP1	YKR048C	Histone chaperone and assembly chaperone for Rps6a/b	physical	1	1	1	Affinity Capture-RNA
TRM2	YKR056W	tRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
PAM17	YKR065C	Constituent of the TIM23 complex	physical	1	1	1	Affinity Capture-RNA
GPT2	YKR067W	Glycerol-3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase	physical	1	1	1	Affinity Capture-RNA
HBS1	YKR084C	GTPase with similarity to translation release factors	physical	1	1	1	Affinity Capture-RNA
PTR2	YKR093W	Integral membrane peptide transporter	physical	1	1	1	Affinity Capture-RNA
PCK1	YKR097W	Phosphoenolpyruvate carboxykinase	physical	1	1	1	Affinity Capture-RNA
HRP1	YOL123W	Subunit of cleavage factor I	physical	1	1	1	Affinity Capture-RNA
ENB1	YOL158C	Ferric enterobactin transmembrane transporter	physical	1	1	1	Affinity Capture-RNA
HPF1	YOL155C	Haze-protective mannoprotein	physical	1	1	1	Affinity Capture-RNA
FRE7	YOL152W	Putative ferric reductase with similarity to Fre2p	physical	1	1	1	Affinity Capture-RNA
GRE2	YOL151W	3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase	physical	1	1	1	Affinity Capture-RNA
RPL18A	YOL120C	Ribosomal 60S subunit protein L18A	physical	1	1	1	Affinity Capture-RNA
PAP2	YOL115W	Non-canonical poly(A) polymerase	physical	1	1	1	Affinity Capture-RNA
WSC3	YOL105C	Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway	physical	1	1	1	Affinity Capture-RNA
SDD3	YOL098C	Putative metalloprotease	physical	1	1	1	Affinity Capture-RNA
WRS1	YOL097C	Cytoplasmic tryptophanyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
RFC4	YOL094C	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Affinity Capture-RNA
HAL9	YOL089C	Putative transcription factor containing a zinc finger	physical	1	1	1	Affinity Capture-RNA
IRA2	YOL081W	GTPase-activating protein	physical	1	1	1	Affinity Capture-RNA
DSC2	YOL073C	Multi-transmembrane subunit of the DSC ubiquitin ligase complex	physical	1	1	1	Affinity Capture-RNA
NUF2	YOL069W	Component of the kinetochore-associated Ndc80 complex	physical	1	1	1	Affinity Capture-RNA
HST1	YOL068C	NAD(+)-dependent histone deacetylase	physical	1	1	1	Affinity Capture-RNA
MET22	YOL064C	Bisphosphate-3'-nucleotidase	physical	1	1	1	Affinity Capture-RNA
GPD2	YOL059W	NAD-dependent glycerol 3-phosphate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
YOL057W	YOL057W	Dipeptidyl-peptidase III	physical	1	1	1	Affinity Capture-RNA
PRE6	YOL038W	Alpha 4 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
GAS5	YOL030W	1,3-beta-glucanosyltransferase	physical	1	1	1	Affinity Capture-RNA
MDM38	YOL027C	Membrane-associated mitochondrial ribosome receptor	physical	1	1	1	Affinity Capture-RNA
DIS3	YOL021C	Exosome core complex catalytic subunit	physical	1	1	1	Affinity Capture-RNA
ESC8	YOL017W	Protein involved in telomeric and mating-type locus silencing	physical	1	1	1	Affinity Capture-RNA
TSR3	YOR006C	Protein required for 20S pre-rRNA processing	physical	1	1	1	Affinity Capture-RNA
SHE4	YOR035C	Protein containing a UCS (UNC-45/CRO1/SHE4) domain	physical	1	1	1	Affinity Capture-RNA
ETT1	YOR051C	Nuclear protein that inhibits replication of Brome mosaic virus	physical	1	1	1	Affinity Capture-RNA
TGL5	YOR081C	Bifunctional triacylglycerol lipase and LPA acyltransferase	physical	1	1	1	Affinity Capture-RNA
OST3	YOR085W	Gamma subunit of the oligosaccharyltransferase complex of the ER lumen	physical	1	1	1	Affinity Capture-RNA
TCB1	YOR086C	Lipid-binding ER protein involved in ER-plasma membrane tethering	physical	1	1	1	Affinity Capture-RNA
YVC1	YOR087W	Vacuolar cation channel	physical	1	1	1	Affinity Capture-RNA
NUP1	YOR098C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-RNA
KTR1	YOR099W	Alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
LEU9	YOR108W	Alpha-isopropylmalate synthase II (2-isopropylmalate synthase)	physical	1	1	1	Affinity Capture-RNA
INP53	YOR109W	Polyphosphatidylinositol phosphatase	physical	1	1	1	Affinity Capture-RNA
IDH2	YOR136W	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
RPB2	YOR151C	RNA polymerase II second largest subunit B150	physical	1	1	1	Affinity Capture-RNA
GET4	YOR164C	Protein involved in inserting tail-anchored proteins into ER membranes	physical	1	1	1	Affinity Capture-RNA
HEM15	YOR176W	Ferrochelatase	physical	1	1	1	Affinity Capture-RNA
RPS30B	YOR182C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SER1	YOR184W	3-phosphoserine aminotransferase	physical	1	1	1	Affinity Capture-RNA
TUF1	YOR187W	Mitochondrial translation elongation factor Tu (EF-Tu)	physical	1	1	1	Affinity Capture-RNA
ULS1	YOR191W	Swi2/Snf2-related translocase, SUMO-Targeted Ubiquitin Ligase (STUbL)	physical	1	1	1	Affinity Capture-RNA
LIP5	YOR196C	Protein involved in biosynthesis of the coenzyme lipoic acid	physical	1	1	1	Affinity Capture-RNA
NOC2	YOR206W	Protein involved in ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
NPT1	YOR209C	Nicotinate phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
MGM1	YOR211C	Mitochondrial GTPase, present in complex with Ugo1p and Fzo1p	physical	1	1	1	Affinity Capture-RNA
STE4	YOR212W	G protein beta subunit	physical	1	1	1	Affinity Capture-RNA
RCN2	YOR220W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ESA1	YOR244W	Catalytic subunit of the histone acetyltransferase complex (NuA4)	physical	1	1	1	Affinity Capture-RNA
RPT4	YOR259C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-RNA
VPH1	YOR270C	Subunit a of the vacuolar-ATPase V0 domain	physical	1	1	1	Affinity Capture-RNA
YTM1	YOR272W	Ribosomal assembly factor and 66S pre-ribosomal particle constituent	physical	1	1	1	Affinity Capture-RNA
RDL2	YOR286W	Protein with rhodanese activity	physical	1	1	1	Affinity Capture-RNA
YPK9	YOR291W	Vacuolar protein with a possible role in sequestering heavy metals	physical	1	1	1	Affinity Capture-RNA
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
MBF1	YOR298C-A	Transcriptional coactivator	physical	1	1	1	Affinity Capture-RNA
ISW2	YOR304W	ATP-dependent DNA translocase involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
NOP58	YOR310C	Protein involved in producing mature rRNAs and snoRNAs	physical	1	1	1	Affinity Capture-RNA
FAA1	YOR317W	Long chain fatty acyl-CoA synthetase	physical	1	1	1	Affinity Capture-RNA
PMT3	YOR321W	Protein O-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
YOR338W	YOR338W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
REV1	YOR346W	Deoxycytidyl transferase	physical	1	1	1	Affinity Capture-RNA
SCP1	YOR367W	Component of yeast cortical actin cytoskeleton	physical	1	1	1	Affinity Capture-RNA
FIT2	YOR382W	Mannoprotein that is incorporated into the cell wall	physical	1	1	1	Affinity Capture-RNA
FIT3	YOR383C	Mannoprotein that is incorporated into the cell wall	physical	1	1	1	Affinity Capture-RNA
PHR1	YOR386W	DNA photolyase involved in photoreactivation	physical	1	1	1	Affinity Capture-RNA
FEX1	YOR390W	Protein involved in fluoride export	physical	1	1	1	Affinity Capture-RNA
VTH1	YIL173W	Putative membrane glycoprotein	physical	1	1	1	Affinity Capture-RNA
UBP7	YIL156W	Ubiquitin-specific protease that cleaves ubiquitin-protein fusions	physical	1	1	1	Affinity Capture-RNA
SSL2	YIL143C	Component of RNA polymerase transcription factor TFIIH holoenzyme	physical	1	1	1	Affinity Capture-RNA
SIM1	YIL123W	Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p)	physical	1	1	1	Affinity Capture-RNA
HIS5	YIL116W	Histidinol-phosphate aminotransferase	physical	1	1	1	Affinity Capture-RNA
NUP159	YIL115C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-RNA
SEC24	YIL109C	Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat	physical	1	1	1	Affinity Capture-RNA
YIL108W	YIL108W	Putative metalloendopeptidase	physical	1	1	1	Affinity Capture-RNA
SEC28	YIL076W	Epsilon-COP subunit of the coatomer	physical	1	1	1	Affinity Capture-RNA
SER33	YIL074C	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	physical	1	1	1	Affinity Capture-RNA
RPS24B	YIL069C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YIL067C	YIL067C	Uncharacterized protein of unknown function	physical	1	1	1	Affinity Capture-RNA
EFM4	YIL064W	Lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
SNP1	YIL061C	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-RNA
RPL34B	YIL052C	Ribosomal 60S subunit protein L34B	physical	1	1	1	Affinity Capture-RNA
NEO1	YIL048W	Phospholipid translocase (flippase)	physical	1	1	1	Affinity Capture-RNA
GVP36	YIL041W	BAR domain protein that localizes to early and late Golgi vesicles	physical	1	1	1	Affinity Capture-RNA
NOT3	YIL038C	Component of the CCR4-NOT core complex, involved in mRNA decapping	physical	1	1	1	Affinity Capture-RNA
MPH1	YIR002C	3'-5' DNA helicase involved in error-free bypass of DNA lesions	physical	1	1	1	Affinity Capture-RNA
IST3	YIR005W	Component of the U2 snRNP	physical	1	1	1	Affinity Capture-RNA
PAN1	YIR006C	Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p	physical	1	1	1	Affinity Capture-RNA
SQT1	YIR012W	Specific assembly chaperone for ribosomal protein Rpl10p	physical	1	1	1	Affinity Capture-RNA
LYS1	YIR034C	Saccharopine dehydrogenase (NAD+, L-lysine-forming)	physical	1	1	1	Affinity Capture-RNA
IRC24	YIR036C	Putative benzil reductase	physical	1	1	1	Affinity Capture-RNA
HYR1	YIR037W	Glutathione peroxidase	physical	1	1	1	Affinity Capture-RNA
URA5	YML106W	Major orotate phosphoribosyltransferase (OPRTase) isozyme	physical	1	1	1	Affinity Capture-RNA
PRE8	YML092C	Alpha 2 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
TUB1	YML085C	Alpha-tubulin	physical	1	1	1	Affinity Capture-RNA
YML131W	YML131W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ERG13	YML126C	3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase	physical	1	1	1	Affinity Capture-RNA
TUB3	YML124C	Alpha-tubulin	physical	1	1	1	Affinity Capture-RNA
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	1	1	1	Affinity Capture-RNA
ERV41	YML067C	Protein localized to COPII-coated vesicles	physical	1	1	1	Affinity Capture-RNA
OGG1	YML060W	Nuclear and mitochondrial glycosylase/lyase	physical	1	1	1	Affinity Capture-RNA
GSF2	YML048W	Endoplasmic reticulum (ER) localized integral membrane protein	physical	1	1	1	Affinity Capture-RNA
YML6	YML025C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
RPS17A	YML024W	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	1	1	1	Affinity Capture-RNA
UBX2	YML013W	Bridging factor involved in ER-associated protein degradation (ERAD)	physical	1	1	1	Affinity Capture-RNA
ERG6	YML008C	Delta(24)-sterol C-methyltransferase	physical	1	1	1	Affinity Capture-RNA
GIS4	YML006C	CAAX box containing protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GLO1	YML004C	Monomeric glyoxalase I	physical	1	1	1	Affinity Capture-RNA
PLB2	YMR006C	Phospholipase B (lysophospholipase) involved in lipid metabolism	physical	1	1	1	Affinity Capture-RNA
PLB1	YMR008C	Phospholipase B (lysophospholipase) involved in lipid metabolism	physical	1	1	1	Affinity Capture-RNA
ERG5	YMR015C	C-22 sterol desaturase	physical	1	1	1	Affinity Capture-RNA
YMR027W	YMR027W	A metal-dependent phosphatase, part of the DUF89 protein family	physical	1	1	1	Affinity Capture-RNA
ERB1	YMR049C	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
STB2	YMR053C	Protein that interacts with Sin3p in a two-hybrid assay	physical	1	1	1	Affinity Capture-RNA
FET3	YMR058W	Ferro-O2-oxidoreductase	physical	1	1	1	Affinity Capture-RNA
UBX4	YMR067C	UBX domain-containing protein that interacts with Cdc48p	physical	1	1	1	Affinity Capture-RNA
RCO1	YMR075W	Essential component of the Rpd3S histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
NPL6	YMR091C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
UTP15	YMR093W	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
YMR099C	YMR099C	Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase)	physical	1	1	1	Affinity Capture-RNA
SPG4	YMR107W	Protein required for high temperature survival during stationary phase	physical	1	1	1	Affinity Capture-RNA
STO1	YMR125W	Large subunit of the nuclear mRNA cap-binding protein complex	physical	1	1	1	Affinity Capture-RNA
POM152	YMR129W	Glycoprotein subunit of transmembrane ring of nuclear pore complex	physical	1	1	1	Affinity Capture-RNA
RPS16A	YMR143W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TIF34	YMR146C	eIF3i subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
IMP1	YMR150C	Catalytic subunit of mitochondrial inner membrane peptidase complex	physical	1	1	1	Affinity Capture-RNA
FPY1	YMR178W	FAD pyrophosphatase	physical	1	1	1	Affinity Capture-RNA
SSO2	YMR183C	Plasma membrane t-SNARE	physical	1	1	1	Affinity Capture-RNA
GCV2	YMR189W	P subunit of the mitochondrial glycine decarboxylase complex	physical	1	1	1	Affinity Capture-RNA
MRPL24	YMR193W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
VTI1	YMR197C	Protein involved in cis-Golgi membrane traffic	physical	1	1	1	Affinity Capture-RNA
ROT1	YMR200W	Molecular chaperone involved in protein folding in ER	physical	1	1	1	Affinity Capture-RNA
ERG2	YMR202W	C-8 sterol isomerase	physical	1	1	1	Affinity Capture-RNA
ERG12	YMR208W	Mevalonate kinase	physical	1	1	1	Affinity Capture-RNA
GAS3	YMR215W	Putative 1,3-beta-glucanosyltransferase	physical	1	1	1	Affinity Capture-RNA
GUA1	YMR217W	GMP synthase	physical	1	1	1	Affinity Capture-RNA
ESC1	YMR219W	Protein involved in telomeric silencing	physical	1	1	1	Affinity Capture-RNA
YMR226C	YMR226C	NADP(+)-dependent serine dehydrogenase and carbonyl reductase	physical	1	1	1	Affinity Capture-RNA
RRP5	YMR229C	RNA binding protein involved in synthesis of 18S and 5.8S rRNAs	physical	1	1	1	Affinity Capture-RNA
RPS10B	YMR230W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RNA1	YMR235C	GTPase activating protein (GAP) for Gsp1p	physical	1	1	1	Affinity Capture-RNA
RKR1	YMR247C	RING domain E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
RKR1	YMR247C	RING domain E3 ubiquitin ligase	genetic	1	1	1	Phenotypic Enhancement
TPS3	YMR261C	Regulatory subunit of trehalose-6-phosphate synthase/phosphatase	physical	1	1	1	Affinity Capture-RNA
RSN1	YMR266W	Membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DSK2	YMR276W	Nuclear-enriched ubiquitin-like polyubiquitin-binding protein	physical	1	1	1	Affinity Capture-RNA
HAS1	YMR290C	ATP-dependent RNA helicase	physical	1	1	1	Affinity Capture-RNA
LCB1	YMR296C	Component of serine palmitoyltransferase	physical	1	1	1	Affinity Capture-RNA
PRC1	YMR297W	Vacuolar carboxypeptidase Y (proteinase C, CPY)	physical	1	1	1	Affinity Capture-RNA
LIP1	YMR298W	Ceramide synthase subunit	physical	1	1	1	Affinity Capture-RNA
UBP15	YMR304W	Ubiquitin-specific protease involved in protein deubiquitination	physical	1	1	1	Affinity Capture-RNA
SCW10	YMR305C	Cell wall protein with similarity to glucanases	physical	1	1	1	Affinity Capture-RNA
PSE1	YMR308C	Karyopherin/importin that interacts with the nuclear pore complex	physical	1	1	1	Affinity Capture-RNA
NIP1	YMR309C	eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
FET4	YMR319C	Low-affinity Fe(II) transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
YMR321C	YMR321C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
KRE1	YNL322C	Cell wall glycoprotein involved in beta-glucan assembly	physical	1	1	1	Affinity Capture-RNA
RFA2	YNL312W	Subunit of heterotrimeric Replication Protein A (RPA)	physical	1	1	1	Affinity Capture-RNA
PUS4	YNL292W	Pseudouridine synthase	physical	1	1	1	Affinity Capture-RNA
SEC21	YNL287W	Gamma subunit of coatomer	physical	1	1	1	Affinity Capture-RNA
MRPL10	YNL284C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
LYP1	YNL268W	Lysine permease	physical	1	1	1	Affinity Capture-RNA
PIK1	YNL267W	Phosphatidylinositol 4-kinase	physical	1	1	1	Affinity Capture-RNA
POL2	YNL262W	Catalytic subunit of DNA polymerase (II) epsilon	physical	1	1	1	Affinity Capture-RNA
SUI1	YNL244C	Translation initiation factor eIF1	physical	1	1	1	Affinity Capture-RNA
SLA2	YNL243W	Adaptor protein that links actin to clathrin and endocytosis	physical	1	1	1	Affinity Capture-RNA
ZWF1	YNL241C	Glucose-6-phosphate dehydrogenase (G6PD)	physical	1	1	1	Affinity Capture-RNA
YTP1	YNL237W	Probable type-III integral membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SIN4	YNL236W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
RTT106	YNL206C	Histone chaperone	physical	1	1	1	Affinity Capture-RNA
PSY2	YNL201C	Subunit of protein phosphatase PP4 complex	physical	1	1	1	Affinity Capture-RNA
SRP1	YNL189W	Karyopherin alpha homolog	physical	1	1	1	Affinity Capture-RNA
UBP10	YNL186W	Ubiquitin-specific protease, deubiquitinates Ub-protein moieties	physical	1	1	1	Affinity Capture-RNA
IPI3	YNL182C	Component of the Rix1 complex and pre-replicative complexes (pre-RCs)	physical	1	1	1	Affinity Capture-RNA
NOP13	YNL175C	Nucleolar protein found in preribosomal complexes	physical	1	1	1	Affinity Capture-RNA
FMP41	YNL168C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RIA1	YNL163C	Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis	physical	1	1	1	Affinity Capture-RNA
RPL42A	YNL162W	Ribosomal 60S subunit protein L42A	physical	1	1	1	Affinity Capture-RNA
YCK2	YNL154C	Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform	physical	1	1	1	Affinity Capture-RNA
PGA2	YNL149C	Essential protein required for maturation of Gas1p and Pho8p	physical	1	1	1	Affinity Capture-RNA
THO2	YNL139C	Subunit of the THO complex	physical	1	1	1	Affinity Capture-RNA
YNL134C	YNL134C	NADH-dependent aldehyde reductase	physical	1	1	1	Affinity Capture-RNA
KRE33	YNL132W	Acetyltransferase required for biogenesis of small ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
NMA111	YNL123W	Serine protease and general molecular chaperone	physical	1	1	1	Affinity Capture-RNA
YNL115C	YNL115C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
INP52	YNL106C	Polyphosphatidylinositol phosphatase	physical	1	1	1	Affinity Capture-RNA
RAS2	YNL098C	GTP-binding protein	physical	1	1	1	Affinity Capture-RNA
YNL095C	YNL095C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LAT1	YNL071W	Dihydrolipoamide acetyltransferase component (E2) of the PDC	physical	1	1	1	Affinity Capture-RNA
RPL9B	YNL067W	Ribosomal 60S subunit protein L9B	physical	1	1	1	Affinity Capture-RNA
SUN4	YNL066W	Cell wall protein related to glucanases localized in birth scars	physical	1	1	1	Affinity Capture-RNA
GCD10	YNL062C	Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p	physical	1	1	1	Affinity Capture-RNA
VAC7	YNL054W	Integral vacuolar membrane protein	physical	1	1	1	Affinity Capture-RNA
MSG5	YNL053W	Dual-specificity protein phosphatase	physical	1	1	1	Affinity Capture-RNA
SFB2	YNL049C	Component of the Sec23p-Sfb2p heterodimer of the COPII vesicle coat	physical	1	1	1	Affinity Capture-RNA
IDH1	YNL037C	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
NCE103	YNL036W	Carbonic anhydrase	physical	1	1	1	Affinity Capture-RNA
PYP1	YNL010W	Sugar alcohol phosphatase	physical	1	1	1	Affinity Capture-RNA
HRB1	YNL004W	Poly(A+) RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
RLP7	YNL002C	Nucleolar protein similar to large ribosomal subunit L7 proteins	physical	1	1	1	Affinity Capture-RNA
PRP2	YNR011C	RNA-dependent DExD/H-box ATPase	physical	1	1	1	Affinity Capture-RNA
TIM23	YNR017W	Essential component of the TIM23 complex	physical	1	1	1	Affinity Capture-RNA
RCF2	YNR018W	Cytochrome c oxidase subunit	physical	1	1	1	Affinity Capture-RNA
YNR021W	YNR021W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DSE4	YNR067C	Daughter cell-specific secreted protein with similarity to glucanases	physical	1	1	1	Affinity Capture-RNA
SAM3	YPL274W	High-affinity S-adenosylmethionine permease	physical	1	1	1	Affinity Capture-RNA
SAM4	YPL273W	S-adenosylmethionine-homocysteine methyltransferase	physical	1	1	1	Affinity Capture-RNA
MDL2	YPL270W	Mitochondrial inner membrane half-type ABC transporter	physical	1	1	1	Affinity Capture-RNA
PLC1	YPL268W	Phospholipase C	physical	1	1	1	Affinity Capture-RNA
KEL3	YPL263C	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FUM1	YPL262W	Fumarase	physical	1	1	1	Affinity Capture-RNA
USV1	YPL230W	Putative transcription factor containing a C2H2 zinc finger	physical	1	1	1	Affinity Capture-RNA
MMT2	YPL224C	Putative metal transporter involved in mitochondrial iron accumulation	physical	1	1	1	Affinity Capture-RNA
RPL1A	YPL220W	Ribosomal 60S subunit protein L1A	physical	1	1	1	Affinity Capture-RNA
SAR1	YPL218W	ARF family GTPase	physical	1	1	1	Affinity Capture-RNA
POS5	YPL188W	Mitochondrial NADH kinase	physical	1	1	1	Affinity Capture-RNA
MRN1	YPL184C	RNA-binding protein that may be involved in translational regulation	physical	1	1	1	Affinity Capture-RNA
RTT10	YPL183C	WD40 domain-containing protein involved in endosomal recycling	physical	1	1	1	Affinity Capture-RNA
SPT14	YPL175W	UDP-glycosyltransferase subunit of the GPI-GnT complex	physical	1	1	1	Affinity Capture-RNA
REV3	YPL167C	Catalytic subunit of DNA polymerase zeta	physical	1	1	1	Affinity Capture-RNA
MLH3	YPL164C	Protein involved in DNA mismatch repair and meiotic recombination	physical	1	1	1	Affinity Capture-RNA
PEP4	YPL154C	Vacuolar aspartyl protease (proteinase A)	physical	1	1	1	Affinity Capture-RNA
KES1	YPL145C	Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger	physical	1	1	1	Affinity Capture-RNA
TAF14	YPL129W	Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes	physical	1	1	1	Affinity Capture-RNA
NAN1	YPL126W	U3 snoRNP protein	physical	1	1	1	Affinity Capture-RNA
KAP120	YPL125W	Karyopherin responsible for the nuclear import of Rpf1p	physical	1	1	1	Affinity Capture-RNA
IDI1	YPL117C	Isopentenyl diphosphate:dimethylallyl diphosphate isomerase	physical	1	1	1	Affinity Capture-RNA
MSD1	YPL104W	Mitochondrial aspartyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
MGR2	YPL098C	Subunit of the TIM23 translocase complex	physical	1	1	1	Affinity Capture-RNA
NOG1	YPL093W	Putative GTPase	physical	1	1	1	Affinity Capture-RNA
SSU1	YPL092W	Plasma membrane sulfite pump involved in sulfite metabolism	physical	1	1	1	Affinity Capture-RNA
RPS6A	YPL090C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RLM1	YPL089C	MADS-box transcription factor	physical	1	1	1	Affinity Capture-RNA
ELP3	YPL086C	Subunit of Elongator complex	physical	1	1	1	Affinity Capture-RNA
MOT1	YPL082C	Essential protein involved in regulation of transcription	physical	1	1	1	Affinity Capture-RNA
RPS9A	YPL081W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPL21B	YPL079W	Ribosomal 60S subunit protein L21B	physical	1	1	1	Affinity Capture-RNA
RGL1	YPL066W	Regulator of Rho1p signaling, cofactor of Tus1p	physical	1	1	1	Affinity Capture-RNA
TIM50	YPL063W	Essential component of the TIM23 complex	physical	1	1	1	Affinity Capture-RNA
ISM1	YPL040C	Mitochondrial isoleucyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
EGD1	YPL037C	Subunit beta1 of the nascent polypeptide-associated complex (NAC)	physical	1	1	1	Affinity Capture-RNA
SKS1	YPL026C	Putative serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
MET12	YPL023C	Protein with MTHFR activity in vitro	physical	1	1	1	Affinity Capture-RNA
RRP12	YPL012W	Protein required for export of the ribosomal subunits	physical	1	1	1	Affinity Capture-RNA
RET3	YPL010W	Zeta subunit of the coatomer complex (COPI)	physical	1	1	1	Affinity Capture-RNA
NCR1	YPL006W	Vacuolar membrane protein involved with Npc2p in sterol trafficking	physical	1	1	1	Affinity Capture-RNA
ICL2	YPR006C	2-methylisocitrate lyase of the mitochondrial matrix	physical	1	1	1	Affinity Capture-RNA
MRX21	YPR011C	Mitochondrial transporter	physical	1	1	1	Affinity Capture-RNA
YPR015C	YPR015C	Putative zinc finger transcription factor	physical	1	1	1	Affinity Capture-RNA
MCM4	YPR019W	Essential helicase component of heterohexameric MCM2-7 complexes	physical	1	1	1	Affinity Capture-RNA
YME1	YPR024W	Catalytic subunit of i-AAA protease complex	physical	1	1	1	Affinity Capture-RNA
YME1	YPR024W	Catalytic subunit of i-AAA protease complex	genetic	1	1	1	Synthetic Growth Defect
NTO1	YPR031W	Subunit of the NuA3 histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
HTS1	YPR033C	Cytoplasmic and mitochondrial histidine tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
VMA13	YPR036W	Subunit H of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-RNA
RPL43A	YPR043W	Ribosomal 60S subunit protein L43A	physical	1	1	1	Affinity Capture-RNA
NHP6A	YPR052C	High-mobility group (HMG) protein	physical	1	1	1	Affinity Capture-RNA
YMC1	YPR058W	Secondary mitochondrial inner membrane glycine transporter	physical	1	1	1	Affinity Capture-RNA
YPR063C	YPR063C	ER-localized protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPE3	YPR069C	Spermidine synthase	physical	1	1	1	Affinity Capture-RNA
SRP54	YPR088C	Signal recognition particle (SRP) subunit (homolog of mammalian SRP54)	physical	1	1	1	Affinity Capture-RNA
TMH18	YPR098C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPL11A	YPR102C	Ribosomal 60S subunit protein L11A	physical	1	1	1	Affinity Capture-RNA
MRI1	YPR118W	5'-methylthioribose-1-phosphate isomerase	physical	1	1	1	Affinity Capture-RNA
RPS23B	YPR132W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SPN1	YPR133C	Protein involved in RNA polymerase II transcription	physical	1	1	1	Affinity Capture-RNA
YPR148C	YPR148C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
KRE6	YPR159W	Glucosyl hydrolase required for beta-1,6-glucan biosynthesis	physical	1	1	1	Affinity Capture-RNA
TIF3	YPR163C	Translation initiation factor eIF-4B	physical	1	1	1	Affinity Capture-RNA
MMS1	YPR164W	Subunit of E3 ubiquitin ligase complex involved in replication repair	physical	1	1	1	Affinity Capture-RNA
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	physical	1	1	1	Affinity Capture-RNA
RPO26	YPR187W	RNA polymerase subunit ABC23	physical	1	1	1	Affinity Capture-RNA
SGE1	YPR198W	Plasma membrane multidrug transporter	physical	1	1	1	Affinity Capture-RNA
VMR1	YHL035C	Vacuolar membrane protein	physical	1	1	1	Affinity Capture-RNA
RPL8A	YHL033C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Affinity Capture-RNA
ECM29	YHL030W	Scaffold protein	physical	1	1	1	Affinity Capture-RNA
PRS3	YHL011C	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Affinity Capture-RNA
LAG1	YHL003C	Ceramide synthase component	physical	1	1	1	Affinity Capture-RNA
RPL14B	YHL001W	Ribosomal 60S subunit protein L14B	physical	1	1	1	Affinity Capture-RNA
OSH7	YHR001W	Oxysterol-binding phosphatidylserine transferase	physical	1	1	1	Affinity Capture-RNA
TIM10	YHR005C-A	Essential protein of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
SOD2	YHR008C	Mitochondrial manganese superoxide dismutase	physical	1	1	1	Affinity Capture-RNA
TDA3	YHR009C	Putative oxidoreductase involved in late endosome to Golgi transport	physical	1	1	1	Affinity Capture-RNA
RPL27A	YHR010W	Ribosomal 60S subunit protein L27A	physical	1	1	1	Affinity Capture-RNA
VPS29	YHR012W	Subunit of the membrane-associated retromer complex	physical	1	1	1	Affinity Capture-RNA
PUT2	YHR037W	Delta-1-pyrroline-5-carboxylate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
MSC7	YHR039C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VMA10	YHR039C-A	Subunit G of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-RNA
NCP1	YHR042W	NADP-cytochrome P450 reductase	physical	1	1	1	Affinity Capture-RNA
FSH1	YHR049W	Lysophospholipase	physical	1	1	1	Affinity Capture-RNA
SMF2	YHR050W	Divalent metal ion transporter involved in manganese homeostasis	physical	1	1	1	Affinity Capture-RNA
YHR054C	YHR054C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RRP3	YHR065C	Protein involved in rRNA processing	physical	1	1	1	Affinity Capture-RNA
DYS1	YHR068W	Deoxyhypusine synthase	physical	1	1	1	Affinity Capture-RNA
ERG7	YHR072W	Lanosterol synthase	physical	1	1	1	Affinity Capture-RNA
NOP10	YHR072W-A	Subunit of box H/ACA snoRNP complex	physical	1	1	1	Affinity Capture-RNA
OSH3	YHR073W	Member of an oxysterol-binding protein family	physical	1	1	1	Affinity Capture-RNA
QNS1	YHR074W	Glutamine-dependent NAD(+) synthetase	physical	1	1	1	Affinity Capture-RNA
NMD2	YHR077C	Protein involved in the nonsense-mediated mRNA decay (NMD) pathway	physical	1	1	1	Affinity Capture-RNA
KSP1	YHR082C	Serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
SAM35	YHR083W	Component of the sorting and assembly machinery (SAM) complex	physical	1	1	1	Affinity Capture-RNA
HXT1	YHR094C	Low-affinity glucose transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
PAL2	YHR097C	Protein involved in clathrin-mediated endocytosis	physical	1	1	1	Affinity Capture-RNA
SFB3	YHR098C	Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat	physical	1	1	1	Affinity Capture-RNA
TRA1	YHR099W	Subunit of SAGA and NuA4 histone acetyltransferase complexes	physical	1	1	1	Affinity Capture-RNA
GGA2	YHR108W	Protein that regulates Arf1p, Arf2p to facilitate Golgi trafficking	physical	1	1	1	Affinity Capture-RNA
TOM71	YHR117W	Mitochondrial outer membrane protein	physical	1	1	1	Affinity Capture-RNA
MSH1	YHR120W	DNA-binding protein of the mitochondria	physical	1	1	1	Affinity Capture-RNA
YHR138C	YHR138C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
IMP3	YHR148W	Component of the SSU processome	physical	1	1	1	Affinity Capture-RNA
RTT107	YHR154W	BRCA1 C-terminal domain protein needed for recovery from DNA damage	physical	1	1	1	Affinity Capture-RNA
KEL1	YHR158C	Protein required for proper cell fusion and cell morphology	physical	1	1	1	Affinity Capture-RNA
SOL3	YHR163W	6-phosphogluconolactonase	physical	1	1	1	Affinity Capture-RNA
NMD3	YHR170W	Protein involved in nuclear export of the large ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
GND1	YHR183W	6-phosphogluconate dehydrogenase (decarboxylating)	physical	1	1	1	Affinity Capture-RNA
KOG1	YHR186C	Subunit of TORC1	physical	1	1	1	Affinity Capture-RNA
LNP1	YHR192W	Lunapark family member involved in ER network formation	physical	1	1	1	Affinity Capture-RNA
EGD2	YHR193C	Alpha subunit of the nascent polypeptide-associated complex (NAC)	physical	1	1	1	Affinity Capture-RNA
RIX1	YHR197W	Component of the Rix1 complex and possibly pre-replicative complexes	physical	1	1	1	Affinity Capture-RNA
SCH9	YHR205W	AGC family protein kinase	physical	1	1	1	Affinity Capture-RNA
PHO12	YHR215W	One of three repressible acid phosphatases	physical	1	1	1	Affinity Capture-RNA
DLD3	YEL071W	2-hydroxyglutarate transhydrogenase, and minor D-lactate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
HAT2	YEL056W	Subunit of the Hat1p-Hat2p histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
GTA1	YEL043W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
UTR2	YEL040W	Chitin transglycosylase	physical	1	1	1	Affinity Capture-RNA
VMA3	YEL027W	Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase	physical	1	1	1	Affinity Capture-RNA
MMS21	YEL019C	Highly conserved SUMO E3 ligase subunit of SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
VAC8	YEL013W	Vacuole-specific Myo2p receptor	physical	1	1	1	Affinity Capture-RNA
WBP1	YEL002C	Beta subunit of the oligosaccharyl transferase glycoprotein complex	physical	1	1	1	Affinity Capture-RNA
IRC22	YEL001C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PMI40	YER003C	Mannose-6-phosphate isomerase	physical	1	1	1	Affinity Capture-RNA
NTF2	YER009W	Nuclear envelope protein	physical	1	1	1	Affinity Capture-RNA
TIR1	YER011W	Cell wall mannoprotein	physical	1	1	1	Affinity Capture-RNA
RPN3	YER021W	Essential non-ATPase regulatory subunit of the 26S proteasome lid	physical	1	1	1	Affinity Capture-RNA
PRO3	YER023W	Delta 1-pyrroline-5-carboxylate reductase	physical	1	1	1	Affinity Capture-RNA
MXR1	YER042W	Methionine-S-sulfoxide reductase	physical	1	1	1	Affinity Capture-RNA
ERG28	YER044C	Endoplasmic reticulum membrane protein	physical	1	1	1	Affinity Capture-RNA
TPA1	YER049W	Prolyl hydroxylase	physical	1	1	1	Affinity Capture-RNA
HOM3	YER052C	Aspartate kinase (L-aspartate 4-P-transferase)	physical	1	1	1	Affinity Capture-RNA
HIS1	YER055C	ATP phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
FCY2	YER056C	Purine-cytosine permease	physical	1	1	1	Affinity Capture-RNA
HMF1	YER057C	Member of the p14.5 protein family	physical	1	1	1	Affinity Capture-RNA
GPP2	YER062C	DL-glycerol-3-phosphate phosphatase involved in glycerol biosynthesis	physical	1	1	1	Affinity Capture-RNA
GET2	YER083C	Subunit of the GET complex	physical	1	1	1	Affinity Capture-RNA
ILV1	YER086W	Threonine deaminase, catalyzes first step in isoleucine biosynthesis	physical	1	1	1	Affinity Capture-RNA
SBH1	YER087C-B	Beta subunit of Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p)	physical	1	1	1	Affinity Capture-RNA
PTC2	YER089C	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-RNA
TRP2	YER090W	Anthranilate synthase	physical	1	1	1	Affinity Capture-RNA
RPS8B	YER102W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPL23B	YER117W	Ribosomal 60S subunit protein L23B	physical	1	1	1	Affinity Capture-RNA
SCS2	YER120W	Integral ER membrane protein, regulates phospholipid metabolism	physical	1	1	1	Affinity Capture-RNA
NSA2	YER126C	Protein constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
GLC7	YER133W	Type 1 S/T protein phosphatase (PP1) catalytic subunit	physical	1	1	1	Affinity Capture-RNA
MAG1	YER142C	3-methyl-adenine DNA glycosylase	physical	1	1	1	Affinity Capture-RNA
FTR1	YER145C	High affinity iron permease	physical	1	1	1	Affinity Capture-RNA
PET122	YER153C	Mitochondrial translational activator specific for the COX3 mRNA	physical	1	1	1	Affinity Capture-RNA
OXA1	YER154W	Mitochondrial inner membrane insertase	physical	1	1	1	Affinity Capture-RNA
PDA1	YER178W	E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex	physical	1	1	1	Affinity Capture-RNA
YCR024C-B	YCR024C-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MIN10	YFR032C-B	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YLR285C-A	YLR285C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YLR342W-A	YLR342W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YDR182W-A	YDR182W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YBL071C-B	YBL071C-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LSO2	YGR169C-A	Ribosome-associated protein	physical	1	1	1	Affinity Capture-RNA
YGR240C-A	YGR240C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YOL013W-A	YOL013W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YOR072W-B	YOR072W-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YMR001C-A	YMR001C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YMR030W-A	YMR030W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNL042W-B	YNL042W-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPL038W-A	YPL038W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPR108W-A	YPR108W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YHR007C-A	YHR007C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PCC1	YKR095W-A	Component of the EKC/KEOPS protein complex	physical	1	1	1	Affinity Capture-RNA
FYV5	YCL058C	De novo-originated gene from non-coding sequence	physical	1	1	1	Affinity Capture-RNA
YNL143C	YNL143C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNL140C	YNL140C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MTC7	YEL033W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MCO8	YIL156W-B	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MIN8	YPR010C-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPR170W-B	YPR170W-B	Putative, non-essential component vacuolar ATPase	physical	1	1	1	Affinity Capture-RNA
MEO1	YBR126W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SMY2	YBR172C	GYF domain protein	physical	1	1	1	Affinity Capture-Western
STL1	YDR536W	Glycerol proton symporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
NOT5	YPR072W	Component of the CCR4-NOT core complex, involved in mRNA decapping	genetic	1	1	1	Synthetic Growth Defect
TEL1	YBL088C	Protein kinase primarily involved in telomere length regulation	genetic	1	1	1	Synthetic Growth Defect
MEC1	YBR136W	Genome integrity checkpoint protein and PI kinase superfamily member	genetic	1	1	1	Synthetic Growth Defect
SPP382	YLR424W	Essential protein that forms a dimer with Ntr2p	genetic	1	1	1	Dosage Lethality
PKH1	YDR490C	Serine/threonine protein kinase	genetic	1	1	1	Synthetic Growth Defect
PKH2	YOL100W	Serine/threonine protein kinase	genetic	1	1	1	Synthetic Growth Defect
EST1	YLR233C	TLC1 RNA-associated factor involved in telomere length regulation	genetic	1	1	1	Synthetic Growth Defect
ESP1	YGR098C	Separase/separin, a caspase-like cysteine protease	genetic	1	1	1	Dosage Growth Defect
PBY1	YBR094W	Putative tubulin tyrosine ligase associated with P-bodies	genetic	1	1	1	Dosage Rescue
AEP1	YMR064W	Protein required for expression of the mitochondrial OLI1 gene	physical	1	1	1	Affinity Capture-RNA
AEP2	YMR282C	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
ACK1	YDL203C	Protein that functions in the cell wall integrity pathway	physical	1	1	1	Affinity Capture-RNA
CSE2	YNR010W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
COG3	YER157W	Essential component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
ADA2	YDR448W	Transcription coactivator	physical	1	1	1	Affinity Capture-RNA
CMD1	YBR109C	Calmodulin	physical	1	1	1	Affinity Capture-RNA
ARP8	YOR141C	Nuclear actin-related protein involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
AFG2	YLR397C	ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex	physical	1	1	1	Affinity Capture-RNA
AAP1	YHR047C	Arginine/alanine amino peptidase	physical	1	1	1	Affinity Capture-RNA
BLM10	YFL007W	Proteasome activator	physical	1	1	1	Affinity Capture-RNA
CWC22	YGR278W	Spliceosome-associated protein that is required for pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
DBP8	YHR169W	ATPase, putative RNA helicase of the DEAD-box family	physical	1	1	1	Affinity Capture-RNA
CPA2	YJR109C	Large subunit of carbamoyl phosphate synthetase	physical	1	1	1	Affinity Capture-RNA
DEP1	YAL013W	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
CTI6	YPL181W	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
DBP2	YNL112W	ATP-dependent RNA helicase of the DEAD-box protein family	physical	1	1	1	Affinity Capture-RNA
CDC6	YJL194W	Essential ATP-binding protein required for DNA replication	physical	1	1	1	Affinity Capture-RNA
CSN9	YDR179C	Subunit of the Cop9 signalosome	physical	1	1	1	Affinity Capture-RNA
CSI1	YMR025W	Subunit of the Cop9 signalosome	physical	1	1	1	Affinity Capture-RNA
ANP1	YEL036C	Subunit of the alpha-1,6 mannosyltransferase complex	physical	1	1	1	Affinity Capture-RNA
CSE1	YGL238W	Nuclear envelope protein that acts as a recycling factor	physical	1	1	1	Affinity Capture-RNA
ABF2	YMR072W	Mitochondrial DNA-binding protein	physical	1	1	1	Affinity Capture-RNA
BSP1	YPR171W	Adapter that links synaptojanins to the cortical actin cytoskeleton	physical	1	1	1	Affinity Capture-RNA
BRR1	YPR057W	snRNP protein component of spliceosomal snRNPs	physical	1	1	1	Affinity Capture-RNA
BUR2	YLR226W	Cyclin for the Sgv1p (Bur1p) protein kinase	physical	1	1	1	Affinity Capture-RNA
CRN1	YLR429W	Coronin	physical	1	1	1	Affinity Capture-RNA
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
CCT7	YJL111W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
BCY1	YIL033C	Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA)	physical	1	1	1	Affinity Capture-RNA
BET5	YML077W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
BCK1	YJL095W	MAPKKK acting in the protein kinase C signaling pathway	physical	1	1	1	Affinity Capture-RNA
BCK1	YJL095W	MAPKKK acting in the protein kinase C signaling pathway	genetic	1	1	1	Dosage Growth Defect
CAB5	YDR196C	Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC)	physical	1	1	1	Affinity Capture-RNA
CYM1	YDR430C	Lysine-specific metalloprotease of the pitrilysin family	physical	1	1	1	Affinity Capture-RNA
CMS1	YLR003C	Putative subunit of the 90S preribosome processome complex	physical	1	1	1	Affinity Capture-RNA
BNA3	YJL060W	Kynurenine aminotransferase	physical	1	1	1	Affinity Capture-RNA
CDC13	YDL220C	Single stranded DNA-binding protein found at TG1-3 telomere G-tails	physical	1	1	1	Affinity Capture-RNA
AIM41	YOR215C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ATP4	YPL078C	Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ABP1	YCR088W	Actin-binding protein of the cortical actin cytoskeleton	physical	1	1	1	Affinity Capture-RNA
CRZ1	YNL027W	Transcription factor, activates transcription of stress response genes	physical	1	1	1	Affinity Capture-RNA
BBC1	YJL020C	Protein possibly involved in assembly of actin patches	physical	1	1	1	Affinity Capture-RNA
ATP3	YBR039W	Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ADH2	YMR303C	Glucose-repressible alcohol dehydrogenase II	physical	1	1	1	Affinity Capture-RNA
CDC5	YMR001C	Polo-like kinase required for mitotic exit	physical	1	1	1	Affinity Capture-RNA
ADO1	YJR105W	Adenosine kinase	physical	1	1	1	Affinity Capture-RNA
ATG31	YDR022C	Autophagy-specific protein required for autophagosome formation	physical	1	1	1	Affinity Capture-RNA
ATG17	YLR423C	Scaffold protein responsible for phagophore assembly site organization	physical	1	1	1	Affinity Capture-RNA
ASA1	YPR085C	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
AAC3	YBR085W	Mitochondrial inner membrane ADP/ATP translocator	physical	1	1	1	Affinity Capture-RNA
DCS1	YLR270W	Non-essential hydrolase involved in mRNA decapping	physical	1	1	1	Affinity Capture-RNA
ARF1	YDL192W	ADP-ribosylation factor	physical	1	1	1	Affinity Capture-RNA
CPR6	YLR216C	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
CNA1	YLR433C	Calcineurin A	physical	1	1	1	Affinity Capture-RNA
CMP2	YML057W	Calcineurin A	physical	1	1	1	Affinity Capture-RNA
ARO4	YBR249C	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Affinity Capture-RNA
BUD13	YGL174W	Subunit of the RES complex	physical	1	1	1	Affinity Capture-RNA
APM3	YBR288C	Mu3-like subunit of the clathrin associated protein complex (AP-3)	physical	1	1	1	Affinity Capture-RNA
AAT2	YLR027C	Cytosolic aspartate aminotransferase involved in nitrogen metabolism	physical	1	1	1	Affinity Capture-RNA
BOL2	YGL220W	Cytosolic protein involved in repression of iron regulon transcription	physical	1	1	1	Affinity Capture-RNA
BFA1	YJR053W	Subunit of a two-component GTPase-activating protein, Bfa1p-Bub2p	physical	1	1	1	Affinity Capture-RNA
CAF120	YNL278W	Part of the CCR4-NOT transcriptional regulatory complex	physical	1	1	1	Affinity Capture-RNA
CMK1	YFR014C	Calmodulin-dependent protein kinase	physical	1	1	1	Affinity Capture-RNA
CCT5	YJR064W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
ADK1	YDR226W	Adenylate kinase, required for purine metabolism	physical	1	1	1	Affinity Capture-RNA
COF1	YLL050C	Cofilin, involved in pH-dependent actin filament depolarization	physical	1	1	1	Affinity Capture-RNA
AAC1	YMR056C	Mitochondrial inner membrane ADP/ATP translocator	physical	1	1	1	Affinity Capture-RNA
ATG12	YBR217W	Ubiquitin-like modifier involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-RNA
ATG11	YPR049C	Adapter protein for pexophagy and the Cvt targeting pathway	physical	1	1	1	Affinity Capture-RNA
DDC1	YPL194W	DNA damage checkpoint protein	physical	1	1	1	Affinity Capture-RNA
AXL1	YPR122W	Haploid specific endoprotease of a-factor mating pheromone	physical	1	1	1	Affinity Capture-RNA
ARG4	YHR018C	Argininosuccinate lyase	physical	1	1	1	Affinity Capture-RNA
AYR1	YIL124W	Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase	physical	1	1	1	Affinity Capture-RNA
CBK1	YNL161W	Serine/threonine protein kinase of the the RAM signaling network	physical	1	1	1	Affinity Capture-RNA
APT1	YML022W	Adenine phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
CDC20	YGL116W	Activator of anaphase-promoting complex/cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
AIP1	YMR092C	Actin cortical patch component	physical	1	1	1	Affinity Capture-RNA
DAS1	YJL149W	Putative SCF ubiquitin ligase F-box protein	physical	1	1	1	Affinity Capture-RNA
ADH3	YMR083W	Mitochondrial alcohol dehydrogenase isozyme III	physical	1	1	1	Affinity Capture-RNA
ARE2	YNR019W	Acyl-CoA:sterol acyltransferase	physical	1	1	1	Affinity Capture-RNA
BUD32	YGR262C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
ART10	YLR392C	Protein of unknown function that contains 2 PY motifs	physical	1	1	1	Affinity Capture-RNA
CDC4	YFL009W	F-box protein required for both the G1/S and G2/M phase transitions	physical	1	1	1	Affinity Capture-RNA
AFR1	YDR085C	Protein required for pheromone-induced projection (shmoo) formation	physical	1	1	1	Affinity Capture-RNA
CTF13	YMR094W	Subunit of the CBF3 complex	physical	1	1	1	Affinity Capture-RNA
ADD66	YKL206C	Protein involved in 20S proteasome assembly	physical	1	1	1	Affinity Capture-RNA
CIN8	YEL061C	Bipolar kinesin motor protein	physical	1	1	1	Affinity Capture-RNA
ARE1	YCR048W	Acyl-CoA:sterol acyltransferase	physical	1	1	1	Affinity Capture-RNA
CAC2	YML102W	Subunit of chromatin assembly factor I (CAF-1), with Rlf2p and Msi1p	physical	1	1	1	Affinity Capture-RNA
CWC21	YDR482C	Protein involved in RNA splicing by the spliceosome	physical	1	1	1	Affinity Capture-RNA
CHS1	YNL192W	Chitin synthase I	physical	1	1	1	Affinity Capture-RNA
CBP6	YBR120C	Mitochondrial protein required for translation of the COB mRNA	physical	1	1	1	Affinity Capture-RNA
ADE17	YMR120C	Enzyme of 'de novo' purine biosynthesis	physical	1	1	1	Affinity Capture-RNA
AIP5	YFR016C	Protein that positively regulates actin assembly	physical	1	1	1	Affinity Capture-RNA
CTF4	YPR135W	Chromatin-associated protein	physical	1	1	1	Affinity Capture-RNA
BUD7	YOR299W	Member of the ChAPs family (Chs5p-Arf1p-binding proteins)	physical	1	1	1	Affinity Capture-RNA
BCK2	YER167W	Serine/threonine-rich protein involved in PKC1 signaling pathway	physical	1	1	1	Affinity Capture-RNA
ATG20	YDL113C	Sorting nexin family member	physical	1	1	1	Affinity Capture-RNA
CIK1	YMR198W	Kinesin-associated protein	physical	1	1	1	Affinity Capture-RNA
BUD9	YGR041W	Protein involved in bud-site selection	physical	1	1	1	Affinity Capture-RNA
AHC1	YOR023C	Subunit of the Ada histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
ASR1	YPR093C	Ubiquitin ligase that modifies and regulates RNA Pol II	physical	1	1	1	Affinity Capture-RNA
BIO3	YNR058W	7,8-diamino-pelargonic acid aminotransferase (DAPA)	physical	1	1	1	Affinity Capture-RNA
CPR3	YML078W	Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
CPA1	YOR303W	Small subunit of carbamoyl phosphate synthetase	physical	1	1	1	Affinity Capture-RNA
DBF2	YGR092W	Ser/Thr kinase involved in transcription and stress response	physical	1	1	1	Affinity Capture-RNA
AVT2	YEL064C	Putative transporter	physical	1	1	1	Affinity Capture-RNA
CLN2	YPL256C	G1 cyclin involved in regulation of the cell cycle	physical	1	1	1	Affinity Capture-RNA
ADH6	YMR318C	NADPH-dependent medium chain alcohol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
CKI1	YLR133W	Choline kinase	physical	1	1	1	Affinity Capture-RNA
ADE6	YGR061C	Formylglycinamidine-ribonucleotide (FGAM)-synthetase	physical	1	1	1	Affinity Capture-RNA
APE2	YKL157W	Aminopeptidase yscII	physical	1	1	1	Affinity Capture-RNA
CHZ1	YER030W	Histone chaperone for Htz1p/H2A-H2B dimer	physical	1	1	1	Affinity Capture-RNA
BNA5	YLR231C	Kynureninase	physical	1	1	1	Affinity Capture-RNA
AFG3	YER017C	Mitochondrial inner membrane m-AAA protease component	physical	1	1	1	Affinity Capture-RNA
APM4	YOL062C	Cargo-binding mu subunit of AP-2	physical	1	1	1	Affinity Capture-RNA
ATP7	YKL016C	Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CTK3	YML112W	Gamma subunit of C-terminal domain kinase I	physical	1	1	1	Affinity Capture-RNA
DCK1	YLR422W	Dock family protein (Dedicator Of CytoKinesis), homolog of human DOCK1	physical	1	1	1	Affinity Capture-RNA
DAD1	YDR016C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
BIT2	YBR270C	Subunit of TORC2 membrane-associated complex	physical	1	1	1	Affinity Capture-RNA
BUD27	YFL023W	Unconventional prefoldin protein involved in translation initiation	physical	1	1	1	Affinity Capture-RNA
ATG16	YMR159C	Conserved protein involved in autophagy	physical	1	1	1	Affinity Capture-RNA
ARH1	YDR376W	Oxidoreductase of the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
ATP20	YPR020W	Subunit g of the mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CDC43	YGL155W	Beta subunit of geranylgeranyltransferase type I	physical	1	1	1	Affinity Capture-RNA
CLN3	YAL040C	G1 cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-RNA
CLN3	YAL040C	G1 cyclin involved in cell cycle progression	genetic	1	1	1	Dosage Lethality
BIM1	YER016W	Microtubule plus end-tracking protein	physical	1	1	1	Affinity Capture-RNA
BNI4	YNL233W	Targeting subunit for Glc7p protein phosphatase	physical	1	1	1	Affinity Capture-RNA
ACO2	YJL200C	Putative mitochondrial aconitase isozyme	physical	1	1	1	Affinity Capture-RNA
ATG19	YOL082W	Receptor protein for the cytoplasm-to-vacuole targeting (Cvt) pathway	physical	1	1	1	Affinity Capture-RNA
COG2	YGR120C	Essential component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
ALY2	YJL084C	Alpha arrestin, Ub-ligase adaptor for Rsp5p	physical	1	1	1	Affinity Capture-RNA
BAS1	YKR099W	Myb-related transcription factor	physical	1	1	1	Affinity Capture-RNA
COQ5	YML110C	2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase	physical	1	1	1	Affinity Capture-RNA
DAS2	YDR020C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
BNA6	YFR047C	Quinolinate phosphoribosyl transferase	physical	1	1	1	Affinity Capture-RNA
DET1	YDR051C	Acid phosphatase	physical	1	1	1	Affinity Capture-RNA
AIM7	YDR063W	Protein that interacts with Arp2/3 complex	physical	1	1	1	Affinity Capture-RNA
CNL1	YDR357C	Subunit of the BLOC-1 complex involved in endosomal maturation	physical	1	1	1	Affinity Capture-RNA
AKR2	YOR034C	Ankyrin repeat-containing protein	physical	1	1	1	Affinity Capture-RNA
AVO2	YMR068W	Component of a complex containing the Tor2p kinase and other proteins	physical	1	1	1	Affinity Capture-RNA
CUB1	YPL260W	Conserved fungal gene linked to DNA repair and proteasome function	physical	1	1	1	Affinity Capture-RNA
COG4	YPR105C	Essential component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
BOS1	YLR078C	v-SNARE (vesicle specific SNAP receptor)	physical	1	1	1	Affinity Capture-RNA
APC11	YDL008W	Catalytic core subunit, Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
APC9	YLR102C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
CDC26	YFR036W	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
CEP3	YMR168C	Essential kinetochore protein	physical	1	1	1	Affinity Capture-RNA
CLB1	YGR108W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-RNA
CWC15	YDR163W	Non-essential protein involved in pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
COG7	YGL005C	Component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
COG6	YNL041C	Component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
COG5	YNL051W	Component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
BMT5	YIL096C	Methyltransferase required for m3U2634 methylation of the 25S rRNA	physical	1	1	1	Affinity Capture-RNA
BRF1	YGR246C	TFIIIB B-related factor	physical	1	1	1	Affinity Capture-RNA
CST6	YIL036W	Basic leucine zipper (bZIP) transcription factor from ATF/CREB family	physical	1	1	1	Affinity Capture-RNA
AMD1	YML035C	AMP deaminase	physical	1	1	1	Affinity Capture-RNA
CET1	YPL228W	RNA 5'-triphosphatase involved in mRNA 5' capping	physical	1	1	1	Affinity Capture-RNA
CDC31	YOR257W	Calcium-binding component of the spindle pole body (SPB) half-bridge	physical	1	1	1	Affinity Capture-RNA
ARP6	YLR085C	Actin-related protein that binds nucleosomes	physical	1	1	1	Affinity Capture-RNA
ARP5	YNL059C	Nuclear actin-related protein involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
CSE4	YKL049C	Centromeric histone H3-like protein	physical	1	1	1	Affinity Capture-RNA
BUD5	YCR038C	GTP/GDP exchange factor for Rsr1p (Bud1p)	physical	1	1	1	Affinity Capture-RNA
APN1	YKL114C	Major apurinic/apyrimidinic endonuclease	physical	1	1	1	Affinity Capture-RNA
BUR6	YER159C	Subunit of a heterodimeric NC2 transcription regulator complex	physical	1	1	1	Affinity Capture-RNA
ATG8	YBL078C	Ub-like protein	physical	1	1	1	Affinity Capture-RNA
BFR1	YOR198C	Component of mRNP complexes associated with polyribosomes	physical	1	1	1	Affinity Capture-RNA
BRN1	YBL097W	Subunit of the condensin complex	physical	1	1	1	Affinity Capture-RNA
BUD4	YJR092W	Anillin-like protein involved in bud-site selection	physical	1	1	1	Affinity Capture-RNA
DBP5	YOR046C	Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family	physical	1	1	1	Affinity Capture-RNA
DBP5	YOR046C	Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family	genetic	1	1	1	Synthetic Lethality
BNI5	YNL166C	Linker protein responsible for recruitment of myosin to the bud neck	physical	1	1	1	Affinity Capture-RNA
ATS1	YAL020C	Protein required for modification of wobble nucleosides in tRNA	physical	1	1	1	Affinity Capture-RNA
BIK1	YCL029C	Microtubule-associated protein	physical	1	1	1	Affinity Capture-RNA
CBF2	YGR140W	Essential kinetochore protein	physical	1	1	1	Affinity Capture-RNA
CNM67	YNL225C	Component of the spindle pole body outer plaque	physical	1	1	1	Affinity Capture-RNA
BBP1	YPL255W	Protein required for the spindle pole body (SPB) duplication	physical	1	1	1	Affinity Capture-RNA
BUD8	YLR353W	Protein involved in bud-site selection	physical	1	1	1	Affinity Capture-RNA
BUD2	YKL092C	GTPase activating factor for Rsr1p/Bud1p	physical	1	1	1	Affinity Capture-RNA
BNR1	YIL159W	Formin	physical	1	1	1	Affinity Capture-RNA
BUD6	YLR319C	Actin- and formin-interacting protein	physical	1	1	1	Affinity Capture-RNA
AFI1	YOR129C	Arf3p polarization-specific docking factor	physical	1	1	1	Affinity Capture-RNA
DAL80	YKR034W	Negative regulator of genes in multiple nitrogen degradation pathways	physical	1	1	1	Affinity Capture-RNA
DBP1	YPL119C	ATP-dependent RNA helicase of the DEAD-box protein family	physical	1	1	1	Affinity Capture-RNA
BCH1	YMR237W	Member of the ChAPs family (Chs5p-Arf1p-binding proteins)	physical	1	1	1	Affinity Capture-RNA
ALY1	YKR021W	Alpha arrestin, substrate of calcineurin	physical	1	1	1	Affinity Capture-RNA
CUS2	YNL286W	Putative checkpoint factor in transcription	physical	1	1	1	Affinity Capture-RNA
CMR2	YOR093C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
AZF1	YOR113W	Zinc-finger transcription factor	physical	1	1	1	Affinity Capture-RNA
ATP10	YLR393W	Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ADY4	YLR227C	Structural component of the meiotic outer plaque	physical	1	1	1	Affinity Capture-RNA
CHS5	YLR330W	Component of the exomer complex	physical	1	1	1	Affinity Capture-RNA
ALG5	YPL227C	UDP-glucose:dolichyl-phosphate glucosyltransferase	physical	1	1	1	Affinity Capture-RNA
CCH1	YGR217W	Voltage-gated high-affinity calcium channel	physical	1	1	1	Affinity Capture-RNA
CPR7	YJR032W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
CYB2	YML054C	Cytochrome b2 (L-lactate cytochrome-c oxidoreductase)	physical	1	1	1	Affinity Capture-RNA
BCS1	YDR375C	Protein translocase and chaperone required for Complex III assembly	physical	1	1	1	Affinity Capture-RNA
CAP2	YIL034C	Beta subunit of the capping protein heterodimer (Cap1p and Cap2p)	physical	1	1	1	Affinity Capture-RNA
ASN1	YPR145W	Asparagine synthetase	physical	1	1	1	Affinity Capture-RNA
CIN2	YPL241C	GTPase-activating protein (GAP) for Cin4p	physical	1	1	1	Affinity Capture-RNA
BET4	YJL031C	Alpha subunit of Type II geranylgeranyltransferase	physical	1	1	1	Affinity Capture-RNA
ARL3	YPL051W	ARF-like small GTPase of the RAS superfamily	physical	1	1	1	Affinity Capture-RNA
COX14	YML129C	Mitochondrial cytochrome c oxidase (complex IV) assembly factor	physical	1	1	1	Affinity Capture-RNA
ACM1	YPL267W	Pseudosubstrate inhibitor of the APC/C	physical	1	1	1	Affinity Capture-RNA
CLB3	YDL155W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-RNA
ATM1	YMR301C	Mitochondrial inner membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-RNA
AQR1	YNL065W	Plasma membrane transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
ASG1	YIL130W	Zinc cluster protein proposed to be a transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
ABZ1	YNR033W	Para-aminobenzoate (PABA) synthase	physical	1	1	1	Affinity Capture-RNA
CCC1	YLR220W	Vacuolar Fe2+/Mn2+ transporter	physical	1	1	1	Affinity Capture-RNA
ARO80	YDR421W	Zinc finger transcriptional activator of the Zn2Cys6 family	physical	1	1	1	Affinity Capture-RNA
COY1	YKL179C	Golgi membrane protein with similarity to mammalian CASP	physical	1	1	1	Affinity Capture-RNA
BUG1	YDL099W	Cis-golgi localized protein involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
ATP17	YDR377W	Subunit f of the F0 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CNN1	YFR046C	Kinetochore protein	physical	1	1	1	Affinity Capture-RNA
CPS1	YJL172W	Vacuolar carboxypeptidase S	physical	1	1	1	Affinity Capture-RNA
CIT1	YNR001C	Mitochondrial citrate synthase	physical	1	1	1	Affinity Capture-RNA
ATX1	YNL259C	Cytosolic copper metallochaperone	physical	1	1	1	Affinity Capture-RNA
CBS2	YDR197W	Mitochondrial translational activator of the COB mRNA	physical	1	1	1	Affinity Capture-RNA
COQ9	YLR201C	Protein required for ubiquinone biosynthesis and respiratory growth	physical	1	1	1	Affinity Capture-RNA
CIR1	YGR207C	Mitochondrial protein that interacts with frataxin (Yfh1p)	physical	1	1	1	Affinity Capture-RNA
BAP3	YDR046C	Amino acid permease	physical	1	1	1	Affinity Capture-RNA
CFD1	YIL003W	Highly conserved iron-sulfur cluster binding protein	physical	1	1	1	Affinity Capture-RNA
BNA7	YDR428C	Formylkynurenine formamidase	physical	1	1	1	Affinity Capture-RNA
ATP14	YLR295C	Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
BOL3	YAL046C	Protein involved in Fe-S cluster transfer to mitochondrial clients	physical	1	1	1	Affinity Capture-RNA
BDH1	YAL060W	NAD-dependent (R,R)-butanediol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ALG3	YBL082C	Dolichol-P-Man dependent alpha(1-3) mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
CPR5	YDR304C	Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the ER	physical	1	1	1	Affinity Capture-RNA
AYT1	YLL063C	Acetyltransferase	physical	1	1	1	Affinity Capture-RNA
ARI1	YGL157W	NADPH-dependent aldehyde reductase	physical	1	1	1	Affinity Capture-RNA
BUD23	YCR047C	Ribosome biogenesis factor	physical	1	1	1	Affinity Capture-RNA
AVT1	YJR001W	Vacuolar transporter	physical	1	1	1	Affinity Capture-RNA
AHK1	YDL073W	Scaffold protein in the HKR1 sub-branch of the Hog1p-signaling pathway	physical	1	1	1	Affinity Capture-RNA
ACP1	YKL192C	Mitochondrial matrix acyl carrier protein	physical	1	1	1	Affinity Capture-RNA
ADE16	YLR028C	Enzyme of 'de novo' purine biosynthesis	physical	1	1	1	Affinity Capture-RNA
BRL1	YHR036W	Essential nuclear envelope/ER integral membrane protein	physical	1	1	1	Affinity Capture-RNA
DDR48	YMR173W	DNA damage-responsive protein	physical	1	1	1	Affinity Capture-RNA
ATG38	YLR211C	Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I	physical	1	1	1	Affinity Capture-RNA
BNA1	YJR025C	3-hydroxyanthranilic acid dioxygenase	physical	1	1	1	Affinity Capture-RNA
CRS1	YNL247W	Cysteinyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
CUE3	YGL110C	Subunit of ribosome-associated quality control trigger complex (RQT)	physical	1	1	1	Affinity Capture-RNA
ATG32	YIL146C	Mitochondrial outer membrane protein required to initiate mitophagy	physical	1	1	1	Affinity Capture-RNA
ACB1	YGR037C	Acyl-CoA-binding protein	physical	1	1	1	Affinity Capture-RNA
CHA1	YCL064C	Catabolic L-serine (L-threonine) deaminase	physical	1	1	1	Affinity Capture-RNA
BAR1	YIL015W	Aspartyl protease secreted to periplasmic space of mating type a cell	physical	1	1	1	Affinity Capture-RNA
ATP12	YJL180C	Assembly factor for F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CYB5	YNL111C	Cytochrome b5	physical	1	1	1	Affinity Capture-RNA
BYE1	YKL005C	Negative regulator of transcription elongation	physical	1	1	1	Affinity Capture-RNA
CBS1	YDL069C	Mitochondrial translational activator of the COB mRNA	physical	1	1	1	Affinity Capture-RNA
CYK3	YDL117W	SH3-domain protein located in the bud neck and cytokinetic actin ring	physical	1	1	1	Affinity Capture-RNA
APS1	YLR170C	Small subunit of the clathrin-associated adaptor complex AP-1	physical	1	1	1	Affinity Capture-RNA
BIL1	YOR304C-A	Protein that binds Bud6p and has a role in actin cable assembly	physical	1	1	1	Affinity Capture-RNA
CAJ1	YER048C	Nuclear type II J heat shock protein of the E. coli dnaJ family	physical	1	1	1	Affinity Capture-RNA
COQ6	YGR255C	Flavin-dependent monooxygenase involved in ubiquinone biosynthesis	physical	1	1	1	Affinity Capture-RNA
AIM26	YKL037W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ANY1	YMR010W	Protein involved in phospholipid flippase function	physical	1	1	1	Affinity Capture-RNA
CSH1	YBR161W	Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit	physical	1	1	1	Affinity Capture-RNA
CUZ1	YNL155W	Protein with a role in the ubiquitin-proteasome pathway	physical	1	1	1	Affinity Capture-RNA
ADE12	YNL220W	Adenylosuccinate synthase	physical	1	1	1	Affinity Capture-RNA
ALD4	YOR374W	Mitochondrial aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-RNA
AIM23	YJL131C	Mitochondrial translation initiation factor 3 (IF3, mIF3)	physical	1	1	1	Affinity Capture-RNA
AHC2	YCR082W	Component of the ADA histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
COA3	YJL062W-A	Mitochondrial protein required for cytochrome c oxidase assembly	physical	1	1	1	Affinity Capture-RNA
ARO3	YDR035W	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Affinity Capture-RNA
ATP25	YMR098C	Protein that associates with mitochondrial ribosome	physical	1	1	1	Affinity Capture-RNA
CLB4	YLR210W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-RNA
ARO2	YGL148W	Bifunctional chorismate synthase and flavin reductase	physical	1	1	1	Affinity Capture-RNA
ABP140	YOR239W	AdoMet-dependent tRNA methyltransferase and actin binding protein	physical	1	1	1	Affinity Capture-RNA
APJ1	YNL077W	Hsp40 chaperone with a role in SUMO-mediated protein degradation	physical	1	1	1	Affinity Capture-RNA
ADD37	YMR184W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CAB1	YDR531W	Pantothenate kinase, ATP:D-pantothenate 4'-phosphotransferase	physical	1	1	1	Affinity Capture-RNA
ARV1	YLR242C	Cortical ER protein	physical	1	1	1	Affinity Capture-RNA
ARN2	YHL047C	Transporter	physical	1	1	1	Affinity Capture-RNA
AIM11	YER093C-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
AGE2	YIL044C	ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector	physical	1	1	1	Affinity Capture-RNA
CYC3	YAL039C	Cytochrome c heme lyase (holocytochrome c synthase)	physical	1	1	1	Affinity Capture-RNA
DGA1	YOR245C	Diacylglycerol acyltransferase	physical	1	1	1	Affinity Capture-RNA
AIM39	YOL053W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
APS2	YJR058C	Small subunit of the clathrin-associated adaptor complex AP-2	physical	1	1	1	Affinity Capture-RNA
COQ8	YGL119W	ATPase required for ubiquinone biosynthesis and respiratory growth	physical	1	1	1	Affinity Capture-RNA
CHS7	YHR142W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ALG6	YOR002W	ER-luminal alpha 1,3 glucosyltransferase	physical	1	1	1	Affinity Capture-RNA
CWH43	YCR017C	GPI lipid remodelase	physical	1	1	1	Affinity Capture-RNA
COX10	YPL172C	Heme A:farnesyltransferase	physical	1	1	1	Affinity Capture-RNA
DER1	YBR201W	ER membrane protein that promotes export of misfolded polypeptides	physical	1	1	1	Affinity Capture-RNA
COX11	YPL132W	Protein required for delivery of copper to Cox1p	physical	1	1	1	Affinity Capture-RNA
CTA1	YDR256C	Catalase A	physical	1	1	1	Affinity Capture-RNA
CHS2	YBR038W	Chitin synthase II	physical	1	1	1	Affinity Capture-RNA
COA1	YIL157C	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
DFG16	YOR030W	Probable multiple transmembrane protein	physical	1	1	1	Affinity Capture-RNA
COM2	YER130C	Transcription factor that binds IME1 Upstream Activation Signal (UAS)	physical	1	1	1	Affinity Capture-RNA
AIM34	YMR003W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CIS3	YJL158C	Mannose-containing glycoprotein constituent of the cell wall	physical	1	1	1	Affinity Capture-RNA
ALG14	YBR070C	Component of UDP-GlcNAc transferase	physical	1	1	1	Affinity Capture-RNA
BSC1	YDL037C	Protein of unconfirmed function	physical	1	1	1	Affinity Capture-RNA
COX7	YMR256C	Subunit VII of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
CGR1	YGL029W	Protein involved in nucleolar integrity and processing of pre-rRNA	physical	1	1	1	Affinity Capture-RNA
ASP3-4	YLR160C	Cell-wall L-asparaginase II involved in asparagine catabolism	physical	1	1	1	Affinity Capture-RNA
CHO2	YGR157W	Phosphatidylethanolamine methyltransferase (PEMT)	physical	1	1	1	Affinity Capture-RNA
CCW12	YLR110C	Cell wall mannoprotein	physical	1	1	1	Affinity Capture-RNA
ARO7	YPR060C	Chorismate mutase	physical	1	1	1	Affinity Capture-RNA
AMD2	YDR242W	Putative amidase	physical	1	1	1	Affinity Capture-RNA
BRR6	YGL247W	Essential nuclear envelope integral membrane protein	physical	1	1	1	Affinity Capture-RNA
BUD16	YEL029C	Putative pyridoxal kinase	physical	1	1	1	Affinity Capture-RNA
CUR1	YPR158W	Sorting factor, central regulator of spatial protein quality control	physical	1	1	1	Affinity Capture-RNA
CHO1	YER026C	Phosphatidylserine synthase	physical	1	1	1	Affinity Capture-RNA
DAK1	YML070W	Dihydroxyacetone kinase	physical	1	1	1	Affinity Capture-RNA
DAT1	YML113W	DNA binding protein that recognizes oligo(dA).oligo(dT) tracts	physical	1	1	1	Affinity Capture-RNA
AGA2	YGL032C	Adhesion subunit of a-agglutinin of a-cells	physical	1	1	1	Affinity Capture-RNA
AGA1	YNR044W	Anchorage subunit of a-agglutinin of a-cells	physical	1	1	1	Affinity Capture-RNA
DFG10	YIL049W	Probable polyprenol reductase	physical	1	1	1	Affinity Capture-RNA
DDL1	YOR022C	DDHD domain-containing phospholipase A1	physical	1	1	1	Affinity Capture-RNA
CWC27	YPL064C	Component of a complex containing Cef1p	physical	1	1	1	Affinity Capture-RNA
AFT2	YPL202C	Iron-regulated transcriptional activator	physical	1	1	1	Affinity Capture-RNA
BOR1	YNL275W	Boron efflux transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
CLB6	YGR109C	B-type cyclin involved in DNA replication during S phase	physical	1	1	1	Affinity Capture-RNA
APA2	YDR530C	Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase II	physical	1	1	1	Affinity Capture-RNA
CCC2	YDR270W	Cu(+2)-transporting P-type ATPase	physical	1	1	1	Affinity Capture-RNA
CBP4	YGR174C	Mitochondrial protein required for assembly of cytochrome bc1 complex	physical	1	1	1	Affinity Capture-RNA
CMC1	YKL137W	Copper-binding protein of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
ATG40	YOR152C	Autophagy receptor with a role in endoplasmic reticulum degradation	physical	1	1	1	Affinity Capture-RNA
CRD1	YDL142C	Cardiolipin synthase	physical	1	1	1	Affinity Capture-RNA
AFG1	YEL052W	Protein that may act as a chaperone for cytochrome c oxidase subunits	physical	1	1	1	Affinity Capture-RNA
AIM20	YIL158W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CPR8	YNR028W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
COX16	YJL003W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
CAB2	YIL083C	Phosphopantothenoylcysteine synthetase (PPCS)	physical	1	1	1	Affinity Capture-RNA
CHM7	YJL049W	Yeast homolog of human CHMP7, localizes to the endoplasmic reticulum	physical	1	1	1	Affinity Capture-RNA
AIM19	YIL087C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DFR1	YOR236W	Dihydrofolate reductase involved in tetrahydrofolate biosynthesis	physical	1	1	1	Affinity Capture-RNA
ALG11	YNL048W	Alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
ATO3	YDR384C	Plasma membrane protein, putative ammonium transporter	physical	1	1	1	Affinity Capture-RNA
ATX2	YOR079C	Golgi membrane protein involved in manganese homeostasis	physical	1	1	1	Affinity Capture-RNA
BIO4	YNR057C	Dethiobiotin synthetase	physical	1	1	1	Affinity Capture-RNA
COA6	YMR244C-A	Protein involved in cytochrome c oxidase (Complex IV) assembly	physical	1	1	1	Affinity Capture-RNA
CIS1	YLR346C	Protein of unknown function found in mitochondria	physical	1	1	1	Affinity Capture-RNA
BCD1	YHR040W	Essential protein required for the accumulation of box C/D snoRNA	physical	1	1	1	Affinity Capture-RNA
AIM33	YML087C	Protein of unknown function, highly conserved across species	physical	1	1	1	Affinity Capture-RNA
AIM24	YJR080C	Protein with a role in determining mitochondrial architecture	physical	1	1	1	Affinity Capture-RNA
CSS3	YOL159C	Protein of unknown function, secreted when constitutively expressed	physical	1	1	1	Affinity Capture-RNA
AIM9	YER080W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DAL7	YIR031C	Malate synthase	physical	1	1	1	Affinity Capture-RNA
BDS1	YOL164W	Bacterially-derived sulfatase	physical	1	1	1	Affinity Capture-RNA
AAT1	YKL106W	Mitochondrial aspartate aminotransferase	physical	1	1	1	Affinity Capture-RNA
APQ12	YIL040W	Nuclear envelope/ER integral membrane protein	physical	1	1	1	Affinity Capture-RNA
CAX4	YGR036C	Dolichyl pyrophosphate (Dol-P-P) phosphatase	physical	1	1	1	Affinity Capture-RNA
ARG7	YMR062C	Mitochondrial ornithine acetyltransferase	physical	1	1	1	Affinity Capture-RNA
ADF1	YCL058W-A	Transcriptional repressor encoded by the FYV5 antisense strand	physical	1	1	1	Affinity Capture-RNA