| Standard name | Systematic name | Name description | Description |
|---|---|---|---|
| TRL1 | YJL087C | tRNA ligase | tRNA ligase; required for tRNA splicing and for both splicing and translation of HAC1 mRNA in the UPR; has phosphodiesterase, polynucleotide kinase, and ligase activities; involved in turnover of tRNA introns; localized at the inner nuclear envelope and cytoplasm |
Cell cycle phase and timing of transcription peak
| Cell cycle phase | Time (min) |
|---|---|
CYCLoPs localization & abundance
| WT1 | WT2 | WT3 | |
|---|---|---|---|
| Cytoplasm | 0.964 | 0.983 | 0.953 |
GFP localization & abundance
| GFP localization | GFP abundance |
|---|---|
| cytoplasm | 3110 |
GO term count
| Metabolism | Cell cycle | Cell division | Signal transduction | DNA replication | |
|---|---|---|---|---|---|
| TRL1 | 4 | 0 | 0 | 1 | 0 |
Enzyme information
| Catalyzed reactions in Yeast8 |
|---|
List of interactors
Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.| Standard name | Systematic name | Name description | Type | #Experiments | #Methods | #Publications | Evidence |
|---|---|---|---|---|---|---|---|
| PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA |
| RFX1 | YLR176C | Major transcriptional repressor of DNA-damage-regulated genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence |
| UGA3 | YDL170W | Transcriptional activator for GABA-dependent induction of GABA genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence |
| CKA1 | YIL035C | Alpha catalytic subunit of casein kinase 2 (CK2) | physical | 1 | 1 | 1 | Affinity Capture-MS |
| NPL3 | YDR432W | RNA-binding protein | genetic | 1 | 1 | 1 | Negative Genetic |
| RRP6 | YOR001W | Nuclear exosome exonuclease component | physical | 1 | 1 | 1 | Affinity Capture-MS |
| CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA |
| DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA |
| ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA |
| RAD52 | YML032C | Protein involved in homologous recombination | genetic | 1 | 1 | 1 | Positive Genetic |
| SMC3 | YJL074C | Subunit of the multiprotein cohesin complex | genetic | 1 | 1 | 1 | Synthetic Lethality |
| SBP1 | YHL034C | Protein that binds eIF4G and has a role in repression of translation | physical | 1 | 1 | 1 | Affinity Capture-RNA |
| CAF20 | YOR276W | Phosphoprotein of the mRNA cap-binding complex | physical | 1 | 1 | 1 | Affinity Capture-RNA |
| SLD2 | YKL108W | Single-stranded DNA origin-binding and annealing protein | physical | 1 | 1 | 1 | Affinity Capture-MS |
| RTT103 | YDR289C | Protein involved in transcription termination by RNA polymerase II | genetic | 1 | 1 | 1 | Negative Genetic |
| MPT5 | YGL178W | mRNA-binding protein of the PUF family | physical | 1 | 1 | 1 | Affinity Capture-RNA |
| SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification |
| FRK1 | YPL141C | Protein kinase of unknown cellular role | physical | 1 | 1 | 1 | Affinity Capture-MS |
| YPT6 | YLR262C | Rab family GTPase | genetic | 1 | 1 | 1 | Positive Genetic |