Standard name Systematic name Name description Description
PUT3 YKL015W Transcriptional activator Transcriptional activator; binds specific gene recruitment sequences and is required for DNA zip code-mediated targeting of genes to nuclear periphery; regulates proline utilization genes, constitutively binds PUT1 and PUT2 promoters as a dimer, undergoes conformational change to form active state; binds other promoters only under activating conditions; differentially phosphorylated in presence of different nitrogen sources; has a Zn(2)-Cys(6) binuclear cluster domain
Visualize the interactome of PUT3
Links to external databases:
  SGD   |   KEGG   |  

Cell cycle phase and timing of transcription peak

Cell cycle phase Time (min)

CYCLoPs localization & abundance

WT1 WT2 WT3
Nucleus 0.945 0.915 0.919
Mito NaN 0.078 0.139

GFP localization & abundance

GFP localization GFP abundance
cytoplasm, nucleus 736

GO term count

Metabolism Cell cycle Cell division Signal transduction DNA replication
PUT3 3 0 0 0 0

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.
Standard name Systematic name Name description Type #Experiments #Methods #Publications Evidence
MCH5 YOR306C Plasma membrane riboflavin transporter regulation 3 3 3 chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence, reporter gene assay evidence
FKH2 YNL068C Forkhead family transcription factor regulation 3 2 3 chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
PUT3 YKL015W Transcriptional activator physical 3 2 3 Co-crystal Structure, Reconstituted Complex, Co-crystal Structure
UME6 YDR207C Rpd3L histone deacetylase complex subunit regulation 2 2 2 chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PUT2 YHR037W Delta-1-pyrroline-5-carboxylate dehydrogenase regulation 2 2 2 chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
GDH2 YDL215C NAD(+)-dependent glutamate dehydrogenase genetic 2 1 2 Negative Genetic, Negative Genetic
LST7 YGR057C Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p physical 2 1 2 Two-hybrid, Two-hybrid
BAT2 YJR148W Cytosolic branched-chain amino acid (BCAA) aminotransferase regulation 2 2 1 chromatin immunoprecipitation-qPCR evidence, northern blot evidence
HOS1 YPR068C Class I histone deacetylase (HDAC) family member genetic 2 1 1 Dosage Lethality, Dosage Lethality
FKH1 YIL131C Forkhead family transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CBF1 YJR060W Basic helix-loop-helix (bHLH) protein regulation 1 1 1 chromatin immunoprecipitation-chip evidence
TYE7 YOR344C Serine-rich protein that contains a bHLH DNA binding motif regulation 1 1 1 chromatin immunoprecipitation-chip evidence
ABF1 YKL112W DNA binding protein with possible chromatin-reorganizing activity regulation 1 1 1 chromatin immunoprecipitation-chip evidence
TFC7 YOR110W RNA pol III transcription initiation factor complex (TFIIIC) subunit regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MED6 YHR058C Subunit of the RNA polymerase II mediator complex regulation 1 1 1 chromatin immunoprecipitation-chip evidence
SPT3 YDR392W Subunit of the SAGA and SAGA-like transcriptional regulatory complexes regulation 1 1 1 chromatin immunoprecipitation-chip evidence
GCN4 YEL009C bZIP transcriptional activator of amino acid biosynthetic genes regulation 1 1 1 chromatin immunoprecipitation-chip evidence
RPD3 YNL330C Histone deacetylase, component of both the Rpd3S and Rpd3L complexes regulation 1 1 1 chromatin immunoprecipitation-chip evidence
AGA2 YGL032C Adhesion subunit of a-agglutinin of a-cells regulation 1 1 1 chromatin immunoprecipitation-chip evidence
DAL2 YIR029W Allantoicase regulation 1 1 1 chromatin immunoprecipitation-chip evidence
AGA1 YNR044W Anchorage subunit of a-agglutinin of a-cells regulation 1 1 1 chromatin immunoprecipitation-chip evidence
BAR1 YIL015W Aspartyl protease secreted to periplasmic space of mating type a cell regulation 1 1 1 chromatin immunoprecipitation-chip evidence
LEU2 YCL018W Beta-isopropylmalate dehydrogenase (IMDH) regulation 1 1 1 northern blot evidence
MET22 YOL064C Bisphosphate-3'-nucleotidase regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CLA4 YNL298W Cdc42p-activated signal transducing kinase regulation 1 1 1 chromatin immunoprecipitation-chip evidence
NFG1 YLR042C Cell wall protein of unknown function regulation 1 1 1 chromatin immunoprecipitation-chip evidence
UTR2 YEL040W Chitin transglycosylase regulation 1 1 1 chromatin immunoprecipitation-chip evidence
PHO13 YDL236W Conserved phosphatase acting as a metabolite repair enzyme regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CWP2 YKL096W-A Covalently linked cell wall mannoprotein regulation 1 1 1 chromatin immunoprecipitation-chip evidence
PCL1 YNL289W Cyclin, interacts with cyclin-dependent kinase Pho85p regulation 1 1 1 chromatin immunoprecipitation-chip evidence
DHH1 YDL160C Cytoplasmic DEAD-box helicase and mRNA decapping activator regulation 1 1 1 chromatin immunoprecipitation-chip evidence
ELO1 YJL196C Elongase I, medium-chain acyl elongase regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CDC6 YJL194W Essential ATP-binding protein required for DNA replication regulation 1 1 1 chromatin immunoprecipitation-chip evidence
FMO1 YHR176W Flavin-containing monooxygenase regulation 1 1 1 chromatin immunoprecipitation-chip evidence
SST2 YLR452C GTPase-activating protein for Gpa1p regulation 1 1 1 chromatin immunoprecipitation-chip evidence
GYP8 YFL027C GTPase-activating protein for yeast Rab family members regulation 1 1 1 chromatin immunoprecipitation-chip evidence
AXL1 YPR122W Haploid specific endoprotease of a-factor mating pheromone regulation 1 1 1 chromatin immunoprecipitation-chip evidence
LEU1 YGL009C Isopropylmalate isomerase regulation 1 1 1 northern blot evidence
KIP1 YBL063W Kinesin-related motor protein regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MFA2 YNL145W Mating pheromone a-factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MFA1 YDR461W Mating pheromone a-factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
BAT1 YHR208W Mitochondrial branched-chain amino acid (BCAA) aminotransferase regulation 1 1 1 northern blot evidence
PRX1 YBL064C Mitochondrial peroxiredoxin with thioredoxin peroxidase activity regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MCO6 YJL127C-B Mitochondrial protein of unknown function regulation 1 1 1 chromatin immunoprecipitation-chip evidence
FUS3 YBL016W Mitogen-activated serine/threonine protein kinase involved in mating regulation 1 1 1 chromatin immunoprecipitation-chip evidence
FOL1 YNL256W Multifunctional enzyme of the folic acid biosynthesis pathway regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MET17 YLR303W O-acetyl homoserine-O-acetyl serine sulfhydrylase regulation 1 1 1 DNA to cDNA expression microarray evidence
PHO11 YAR071W One of three repressible acid phosphatases regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CPR8 YNR028W Peptidyl-prolyl cis-trans isomerase (cyclophilin) regulation 1 1 1 chromatin immunoprecipitation-chip evidence
VBA3 YCL069W Permease of basic amino acids in the vacuolar membrane regulation 1 1 1 chromatin immunoprecipitation-chip evidence
PRM5 YIL117C Pheromone-regulated protein, predicted to have 1 transmembrane segment regulation 1 1 1 chromatin immunoprecipitation-chip evidence
STE6 YKL209C Plasma membrane ATP-binding cassette (ABC) transporter regulation 1 1 1 chromatin immunoprecipitation-chip evidence
SIM1 YIL123W Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p) regulation 1 1 1 chromatin immunoprecipitation-chip evidence
RAX2 YLR084C Protein required for the maintenance of bud site selection regulation 1 1 1 chromatin immunoprecipitation-chip evidence
RUP1 YOR138C Protein that regulates ubiquitination of Rsp5p regulation 1 1 1 chromatin immunoprecipitation-chip evidence
YDR061W YDR061W Protein with similarity to ABC transporter family members regulation 1 1 1 chromatin immunoprecipitation-chip evidence
NRE1 YIR035C Putative cytoplasmic short-chain dehydrogenase/reductase regulation 1 1 1 chromatin immunoprecipitation-chip evidence
NOG2 YNR053C Putative GTPase regulation 1 1 1 DNA to cDNA expression microarray evidence
UBP5 YER144C Putative ubiquitin-specific protease regulation 1 1 1 chromatin immunoprecipitation-chip evidence
STE3 YKL178C Receptor for a factor pheromone regulation 1 1 1 DNA to cDNA expression microarray evidence
STE2 YFL026W Receptor for alpha-factor pheromone regulation 1 1 1 chromatin immunoprecipitation-chip evidence
YHR214C-C YHR214C-C Retrotransposon TYA Gag gene co-transcribed with TYB Pol regulation 1 1 1 chromatin immunoprecipitation-chip evidence
GIC2 YDR309C Rho-family GTPase interacting protein and Cdc42p effector regulation 1 1 1 chromatin immunoprecipitation-chip evidence
BEM2 YER155C Rho GTPase activating protein (RhoGAP) regulation 1 1 1 chromatin immunoprecipitation-chip evidence
POP8 YBL018C Subunit of both RNase MRP and nuclear RNase P regulation 1 1 1 chromatin immunoprecipitation-chip evidence
GPA1 YHR005C Subunit of G protein involved in pheromone response regulation 1 1 1 chromatin immunoprecipitation-chip evidence
RFA3 YJL173C Subunit of heterotrimeric Replication Protein A (RPA) regulation 1 1 1 chromatin immunoprecipitation-chip evidence
ELP4 YPL101W Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex regulation 1 1 1 chromatin immunoprecipitation-chip evidence
KAR4 YCL055W Transcription factor required for response to pheromones regulation 1 1 1 chromatin immunoprecipitation-chip evidence
TEC1 YBR083W Transcription factor targeting filamentation genes and Ty1 expression regulation 1 1 1 chromatin immunoprecipitation-chip evidence
STE12 YHR084W Transcription factor that is activated by a MAPK signaling cascade regulation 1 1 1 chromatin immunoprecipitation-chip evidence
TYW3 YGL050W tRNA methyltransferase required for synthesis of wybutosine regulation 1 1 1 chromatin immunoprecipitation-chip evidence
AVT7 YIL088C Vacuolar amino acid transporter regulation 1 1 1 chromatin immunoprecipitation-chip evidence
HAP4 YKL109W Transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
ADR1 YDR216W Carbon source-responsive zinc-finger transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
ESF1 YDR365C Nucleolar protein involved in pre-rRNA processing physical 1 1 1 Affinity Capture-MS
NSE4 YDL105W Component of the SMC5-SMC6 complex genetic 1 1 1 Positive Genetic
ACT1 YFL039C Actin, structural protein in cytoskeleton genetic 1 1 1 Negative Genetic
CCR4 YAL021C Component of the CCR4-NOT transcriptional complex physical 1 1 1 Affinity Capture-RNA
ARO1 YDR127W Pentafunctional arom protein genetic 1 1 1 Negative Genetic
BDF1 YLR399C BET family transcriptional regulator genetic 1 1 1 Positive Genetic
CDC12 YHR107C Component of the septin ring that is required for cytokinesis genetic 1 1 1 Negative Genetic
BUD31 YCR063W Component of the SF3b subcomplex of the U2 snRNP genetic 1 1 1 Negative Genetic
CLP1 YOR250C Component of the cleavage and polyadenylation factor I (CF I) genetic 1 1 1 Negative Genetic
DCP1 YOL149W Subunit of the Dcp1p-Dcp2p decapping enzyme complex genetic 1 1 1 Negative Genetic
DHH1 YDL160C Cytoplasmic DEAD-box helicase and mRNA decapping activator physical 1 1 1 Affinity Capture-RNA
ISW1 YBR245C ATPase subunit of imitation-switch (ISWI) class chromatin remodelers physical 1 1 1 Affinity Capture-RNA
CRM1 YGR218W Nuclear export factor, exportin physical 1 1 1 Affinity Capture-MS
CSE2 YNR010W Subunit of the RNA polymerase II mediator complex genetic 1 1 1 Positive Genetic
GEP3 YOR205C Protein required for mitochondrial ribosome small subunit biogenesis genetic 1 1 1 Negative Genetic
NUP60 YAR002W FG-nucleoporin component of central core of the nuclear pore complex genetic 1 1 1 Negative Genetic
NRP1 YDL167C Putative RNA binding protein of unknown function genetic 1 1 1 Negative Genetic
DEP1 YAL013W Component of the Rpd3L histone deacetylase complex genetic 1 1 1 Negative Genetic
CDC25 YLR310C Membrane bound guanine nucleotide exchange factor genetic 1 1 1 Negative Genetic
PUF3 YLL013C Protein of the mitochondrial outer surface physical 1 1 1 Affinity Capture-RNA
FAR7 YFR008W Protein involved in recovery from pheromone-induced cell cycle arrest genetic 1 1 1 Negative Genetic
GPP1 YIL053W Constitutively expressed DL-glycerol-3-phosphate phosphatase genetic 1 1 1 Negative Genetic
PSR1 YLL010C Plasma membrane-associated protein phosphatase physical 1 1 1 Affinity Capture-MS
MET30 YIL046W F-box protein containing five copies of the WD40 motif genetic 1 1 1 Negative Genetic
PBA1 YLR199C Protein involved in 20S proteasome assembly genetic 1 1 1 Negative Genetic
DOG1 YHR044C 2-deoxyglucose-6-phosphate phosphatase genetic 1 1 1 Negative Genetic
DPB11 YJL090C DNA replication initiation protein genetic 1 1 1 Negative Genetic
MMS4 YBR098W Subunit of structure-specific Mms4p-Mus81p endonuclease genetic 1 1 1 Negative Genetic
FUS3 YBL016W Mitogen-activated serine/threonine protein kinase involved in mating genetic 1 1 1 Negative Genetic
ISU2 YOR226C Mitochondrial protein required for iron-sulfur protein synthesis genetic 1 1 1 Negative Genetic
MOB2 YFL034C-B Activator of Cbk1p kinase genetic 1 1 1 Negative Genetic
ATG39 YLR312C Transmembrane receptor with a role in nucleophagy genetic 1 1 1 Negative Genetic
HSP10 YOR020C Mitochondrial matrix co-chaperonin genetic 1 1 1 Negative Genetic
CLG1 YGL215W Cyclin-like protein that interacts with Pho85p genetic 1 1 1 Negative Genetic
IME1 YJR094C Master regulator of meiosis that is active only during meiotic events genetic 1 1 1 Negative Genetic
GNP1 YDR508C Broad specificity amino acid permease genetic 1 1 1 Negative Genetic
DAS2 YDR020C Putative protein of unknown function genetic 1 1 1 Negative Genetic
TMA17 YDL110C Regulatory gamma subunit of fatty acid synthase (FAS) physical 1 1 1 Two-hybrid
SKI8 YGL213C Ski complex component and WD-repeat protein physical 1 1 1 Affinity Capture-MS
RPC17 YJL011C RNA polymerase III subunit C17 physical 1 1 1 Two-hybrid
WHI3 YNL197C RNA binding protein that modulates mRNA stability physical 1 1 1 Protein-RNA
SPT16 YGL207W Subunit of the heterodimeric FACT complex (Spt16p-Pob3p) physical 1 1 1 Affinity Capture-MS
URE2 YNL229C Nitrogen catabolite repression transcriptional regulator genetic 1 1 1 Phenotypic Enhancement
VMA9 YCL005W-A Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex genetic 1 1 1 Negative Genetic
SMM1 YNR015W Dihydrouridine synthase genetic 1 1 1 Negative Genetic
SEC63 YOR254C Essential subunit of Sec63 complex genetic 1 1 1 Negative Genetic
SET3 YKR029C Defining member of the SET3 histone deacetylase complex genetic 1 1 1 Negative Genetic
UBP3 YER151C Ubiquitin-specific protease that cleaves Ub-protein fusions genetic 1 1 1 Negative Genetic
SSN3 YPL042C Component of the RNA polymerase II mediator complex genetic 1 1 1 Positive Genetic
RTG3 YBL103C bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways genetic 1 1 1 Negative Genetic
YCK2 YNL154C Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform genetic 1 1 1 Positive Genetic
SKN7 YHR206W Nuclear response regulator and transcription factor genetic 1 1 1 Positive Genetic
YME1 YPR024W Catalytic subunit of i-AAA protease complex genetic 1 1 1 Positive Genetic
TLG1 YDR468C Essential t-SNARE that mediates fusion of vesicles with the late Golgi genetic 1 1 1 Positive Genetic
SCC4 YER147C Subunit of cohesin loading factor (Scc2p-Scc4p) genetic 1 1 1 Positive Genetic
SAN1 YDR143C Ubiquitin-protein ligase genetic 1 1 1 Positive Genetic
YLR046C YLR046C Putative membrane protein genetic 1 1 1 Positive Genetic
YLR297W YLR297W Protein of unknown function genetic 1 1 1 Positive Genetic
UBC12 YLR306W Enzyme that mediates the conjugation of Rub1p genetic 1 1 1 Positive Genetic
TFB1 YDR311W Subunit of TFIIH and nucleotide excision repair factor 3 complexes genetic 1 1 1 Negative Genetic
SEC22 YLR268W R-SNARE protein genetic 1 1 1 Negative Genetic
VID24 YBR105C GID Complex regulatory subunit genetic 1 1 1 Negative Genetic
YSA1 YBR111C Nudix hydrolase family member with ADP-ribose pyrophosphatase activity genetic 1 1 1 Negative Genetic
SAT4 YCR008W Ser/Thr protein kinase involved in salt tolerance, nutrient response genetic 1 1 1 Negative Genetic
RPP1A YDL081C Ribosomal stalk protein P1 alpha genetic 1 1 1 Negative Genetic
RPL35A YDL191W Ribosomal 60S subunit protein L35A genetic 1 1 1 Negative Genetic
YGL081W YGL081W Putative protein of unknown function genetic 1 1 1 Negative Genetic
SPO74 YGL170C Component of the meiotic outer plaque of the spindle pole body genetic 1 1 1 Negative Genetic
SAE2 YGL175C Endonuclease required for telomere elongation genetic 1 1 1 Negative Genetic
VHR1 YIL056W Transcriptional activator genetic 1 1 1 Negative Genetic
SDH9 YJL045W Minor succinate dehydrogenase isozyme genetic 1 1 1 Negative Genetic
YJL070C YJL070C Putative metallo-dependent hydrolase superfamily protein genetic 1 1 1 Negative Genetic
VBA5 YKR105C Plasma membrane protein of the Major Facilitator Superfamily (MFS) genetic 1 1 1 Negative Genetic
YLR177W YLR177W Putative protein of unknown function genetic 1 1 1 Negative Genetic
VAC14 YLR386W Enzyme regulator genetic 1 1 1 Negative Genetic
STE23 YLR389C Metalloprotease genetic 1 1 1 Negative Genetic
RPS19A YOL121C Protein component of the small (40S) ribosomal subunit genetic 1 1 1 Negative Genetic
YVC1 YOR087W Vacuolar cation channel genetic 1 1 1 Negative Genetic
SGS1 YMR190C RecQ family nucleolar DNA helicase genetic 1 1 1 Negative Genetic
YPC1 YBR183W Alkaline ceramidase genetic 1 1 1 Negative Genetic
AIM4 YBR194W Protein proposed to be associated with the nuclear pore complex genetic 1 1 1 Negative Genetic
CDC21 YOR074C Thymidylate synthase genetic 1 1 1 Negative Genetic
OST4 YDL232W Subunit of the oligosaccharyltransferase complex of the ER lumen genetic 1 1 1 Negative Genetic
GAL80 YML051W Transcriptional regulator involved in the repression of GAL genes physical 1 1 1 Two-hybrid
MET28 YIR017C bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex genetic 1 1 1 Negative Genetic
MKK1 YOR231W MAPKK involved in the protein kinase C signaling pathway physical 1 1 1 Biochemical Activity
PER33 YLR064W Protein that localizes to the endoplasmic reticulum genetic 1 1 1 Positive Genetic
HRQ1 YDR291W 3'-5' DNA helicase of the conserved RecQ family genetic 1 1 1 Negative Genetic
PPN1 YDR452W Dual endo- and exopolyphosphatase with a role in phosphate metabolism genetic 1 1 1 Negative Genetic
COA4 YLR218C Twin Cx(9)C protein involved in cytochrome c oxidase organization genetic 1 1 1 Positive Genetic
BSC2 YDR275W Protein of unknown function involved in multidrug resistance genetic 1 1 1 Negative Genetic
CAB1 YDR531W Pantothenate kinase, ATP:D-pantothenate 4'-phosphotransferase genetic 1 1 1 Negative Genetic
MSN4 YKL062W Stress-responsive transcriptional activator genetic 1 1 1 Negative Genetic
PUF2 YPR042C PUF family mRNA-binding protein physical 1 1 1 Affinity Capture-RNA
NNR2 YKL151C Widely-conserved NADHX dehydratase genetic 1 1 1 Negative Genetic
IRC24 YIR036C Putative benzil reductase genetic 1 1 1 Negative Genetic
GRX2 YDR513W Cytoplasmic glutaredoxin genetic 1 1 1 Positive Genetic
DIT1 YDR403W Sporulation-specific enzyme required for spore wall maturation genetic 1 1 1 Negative Genetic
COX12 YLR038C Subunit VIb of cytochrome c oxidase genetic 1 1 1 Negative Genetic
MIC27 YNL100W Component of the MICOS complex genetic 1 1 1 Negative Genetic
DCV1 YFR012W Protein of unknown function genetic 1 1 1 Negative Genetic
GPI1 YGR216C Membrane protein involved in the synthesis of GlcNAc-PI genetic 1 1 1 Negative Genetic
MMM1 YLL006W ER integral membrane protein, ERMES complex subunit genetic 1 1 1 Negative Genetic
GCV1 YDR019C T subunit of the mitochondrial glycine decarboxylase complex genetic 1 1 1 Negative Genetic