| FKH1 | YIL131C | Forkhead family transcription factor | regulation | 3 | 2 | 3 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments | 
            
                | WHI3 | YNL197C | RNA binding protein that modulates mRNA stability | physical | 2 | 2 | 2 | Protein-RNA, Affinity Capture-RNA | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | ChEC-Seq experiments | 
            
                | MET32 | YDR253C | Zinc-finger DNA-binding transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MET4 | YNL103W | Leucine-zipper transcriptional activator | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RGR1 | YLR071C | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | HSF1 | YGL073W | Trimeric heat shock transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | ROX1 | YPR065W | Heme-dependent repressor of hypoxic genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ALA1 | YOR335C | Cytoplasmic and mitochondrial alanyl-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ARP3 | YJR065C | Essential component of the Arp2/3 complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | genetic | 1 | 1 | 1 | Dosage Lethality | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CDC37 | YDR168W | Essential Hsp90p co-chaperone | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BET1 | YIL004C | Type II membrane protein required for vesicular transport | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAF16 | YFL028C | Part of evolutionarily-conserved CCR4-NOT regulatory complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BET4 | YJL031C | Alpha subunit of Type II geranylgeranyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HAP2 | YGL237C | Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | GAL80 | YML051W | Transcriptional regulator involved in the repression of GAL genes | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | HEK2 | YBL032W | RNA binding protein involved in asymmetric localization of ASH1 mRNA | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SSD1 | YDR293C | Translational repressor | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | HSF1 | YGL073W | Trimeric heat shock transcription factor | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | PRP22 | YER013W | DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PBR1 | YNL181W | Putative oxidoreductase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FAS2 | YPL231W | Alpha subunit of fatty acid synthetase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | IMG1 | YCR046C | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | POL30 | YBR088C | Proliferating cell nuclear antigen (PCNA) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TRS23 | YDR246W | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MOB2 | YFL034C-B | Activator of Cbk1p kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAO3 | YIL129C | Component of the RAM signaling network | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FCP1 | YMR277W | Carboxy-terminal domain (CTD) phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PFY1 | YOR122C | Profilin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GDI1 | YER136W | GDP dissociation inhibitor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GNA1 | YFL017C | Glucosamine-6-phosphate acetyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STU1 | YBL034C | Microtubule plus-end-tracking non-motor protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ORC2 | YBR060C | Subunit of the origin recognition complex (ORC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RRP4 | YHR069C | Exosome non-catalytic core component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STS1 | YIR011C | Protein required for localizing proteasomes to the nucleus | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC22 | YLR268W | R-SNARE protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRE33 | YNL132W | Acetyltransferase required for biogenesis of small ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRV2 | YNL138W | CAP (cyclase-associated protein) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGV1 | YPR161C | Cyclin (Bur2p)-dependent protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FIG1 | YBR040W | Integral membrane protein required for efficient mating | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRPL32 | YCR003W | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RGT2 | YDL138W | Plasma membrane high glucose sensor that regulates glucose transport | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RSM28 | YDR494W | Mitochondrial ribosomal protein of the small subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL2A | YFR031C-A | Ribosomal 60S subunit protein L2A | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ROF1 | YHR177W | Putative transcription factor containing a WOPR domain | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PSO2 | YMR137C | Nuclease required for DNA single- and double-strand break repair | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERP4 | YOR016C | Member of the p24 family involved in ER to Golgi transport | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS9A | YPL081W | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MMT2 | YPL224C | Putative metal transporter involved in mitochondrial iron accumulation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMA1 | YGL008C | Plasma membrane P2-type H+-ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ASI2 | YNL159C | Subunit of the inner nuclear membrane Asi ubiquitin ligase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BIG1 | YHR101C | Integral membrane protein of the endoplasmic reticulum | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CUP1-2 | YHR055C | Metallothionein | genetic | 1 | 1 | 1 | Negative Genetic |