| FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | NSE1 | YLR007W | Component of the SMC5-SMC6 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARP4 | YJL081C | Nuclear actin-related protein involved in chromatin remodeling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP2 | YNL061W | rRNA m5C methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPF1 | YHR088W | Protein involved in assembly and export of the large ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP45 | YAL032C | Protein required for pre-mRNA splicing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP56 | YLR197W | Essential evolutionarily-conserved nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAT1 | YOR048C | Nuclear 5' to 3' single-stranded RNA exonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPC34 | YNR003C | RNA polymerase III subunit C34 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CDC11 | YJR076C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC12 | YHR107C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EMG1 | YLR186W | Methyltransferase for rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRD1 | YPR112C | Essential conserved small ribosomal subunit (40s) synthesis factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK5 | YBR142W | Essential nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COG3 | YER157W | Essential component of the conserved oligomeric Golgi complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL12 | YBL035C | B subunit of DNA polymerase alpha-primase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP9 | YDL030W | Subunit of the SF3a splicing factor complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAF1 | YGR274C | TFIID subunit, involved in RNA pol II transcription initiation | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | TAF11 | YML015C | TFIID subunit (40 kDa) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TPK2 | YPL203W | cAMP-dependent protein kinase catalytic subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PLN1 | YKR046C | Perilipin, involved in formation and stability of lipid droplets | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | GSP1 | YLR293C | Ran GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EMI2 | YDR516C | Hexokinase expressed during growth with low glucose levels | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EPT1 | YHR123W | sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GNP1 | YDR508C | Broad specificity amino acid permease | physical | 1 | 1 | 1 | PCA | 
            
                | SLU7 | YDR088C | RNA splicing factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UGA4 | YDL210W | GABA (gamma-aminobutyrate) permease | physical | 1 | 1 | 1 | PCA | 
            
                | CEP3 | YMR168C | Essential kinetochore protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL20B | YOR312C | Ribosomal 60S subunit protein L20B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS17B | YDR447C | Ribosomal protein 51 (rp51) of the small (40s) subunit | physical | 1 | 1 | 1 | PCA | 
            
                | DBF4 | YDR052C | Regulatory subunit of Cdc7p-Dbf4p kinase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SCC2 | YDR180W | Subunit of cohesin loading factor (Scc2p-Scc4p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | OST4 | YDL232W | Subunit of the oligosaccharyltransferase complex of the ER lumen | physical | 1 | 1 | 1 | PCA | 
            
                | SST2 | YLR452C | GTPase-activating protein for Gpa1p | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | VMA16 | YHR026W | Subunit c'' of the vacuolar ATPase | physical | 1 | 1 | 1 | PCA | 
            
                | OKP1 | YGR179C | Outer kinetochore protein required for accurate chromosome segregation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRH1 | YDR033W | Protein that localizes primarily to the plasma membrane | physical | 1 | 1 | 1 | PCA | 
            
                | AVT1 | YJR001W | Vacuolar transporter | physical | 1 | 1 | 1 | PCA | 
            
                | TRS23 | YDR246W | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MSC7 | YHR039C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AGE1 | YDR524C | ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector | physical | 1 | 1 | 1 | PCA | 
            
                | HXT3 | YDR345C | Low affinity glucose transporter of the major facilitator superfamily | physical | 1 | 1 | 1 | PCA | 
            
                | PTR2 | YKR093W | Integral membrane peptide transporter | physical | 1 | 1 | 1 | PCA | 
            
                | SLG1 | YOR008C | Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway | physical | 1 | 1 | 1 | PCA | 
            
                | RER2 | YBR002C | Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SND3 | YBR106W | Involved in SRP-independent protein targeting to the ER | physical | 1 | 1 | 1 | PCA | 
            
                | SHR3 | YDL212W | Endoplasmic reticulum packaging chaperone | physical | 1 | 1 | 1 | PCA | 
            
                | MRN1 | YPL184C | RNA-binding protein that may be involved in translational regulation | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SCS3 | YGL126W | Protein required for normal ER membrane biosynthesis in response to ER | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | SEI1 | YLR404W | Seipin involved in lipid droplet (LD) assembly | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | YNR061C | YNR061C | Protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | ZRC1 | YMR243C | Vacuolar membrane zinc transporter | physical | 1 | 1 | 1 | PCA | 
            
                | YTM1 | YOR272W | Ribosomal assembly factor and 66S pre-ribosomal particle constituent | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YHR210C | YHR210C | Putative aldose 1-epimerase superfamily protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YOR012W | YOR012W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | URA6 | YKL024C | Uridylate kinase | genetic | 1 | 1 | 1 | Negative Genetic |