| PUF3 | 
                 YLL013C  | 
                 Protein of the mitochondrial outer surface  | 
                 physical | 
                 3  | 
                 1  | 
                 3  | 
                 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA  | 
            
            
                | RPD3 | 
                 YNL330C  | 
                 Histone deacetylase, component of both the Rpd3S and Rpd3L complexes  | 
                 genetic | 
                 2  | 
                 1  | 
                 1  | 
                 Synthetic Lethality, Synthetic Lethality  | 
            
            
                | FKH1 | 
                 YIL131C  | 
                 Forkhead family transcription factor  | 
                 regulation | 
                 1  | 
                 1  | 
                 1  | 
                 chromatin immunoprecipitation-chip evidence  | 
            
            
                | MED2 | 
                 YDL005C  | 
                 Subunit of the RNA polymerase II mediator complex  | 
                 regulation | 
                 1  | 
                 1  | 
                 1  | 
                 chromatin immunoprecipitation-chip evidence  | 
            
            
                | XBP1 | 
                 YIL101C  | 
                 Transcriptional repressor  | 
                 regulation | 
                 1  | 
                 1  | 
                 1  | 
                 chromatin immunoprecipitation-chip evidence  | 
            
            
                | YAP1 | 
                 YML007W  | 
                 Basic leucine zipper (bZIP) transcription factor  | 
                 regulation | 
                 1  | 
                 1  | 
                 1  | 
                 chromatin immunoprecipitation-chip evidence  | 
            
            
                | MED4 | 
                 YOR174W  | 
                 Subunit of the RNA polymerase II mediator complex  | 
                 regulation | 
                 1  | 
                 1  | 
                 1  | 
                 chromatin immunoprecipitation-chip evidence  | 
            
            
                | CCR4 | 
                 YAL021C  | 
                 Component of the CCR4-NOT transcriptional complex  | 
                 physical | 
                 1  | 
                 1  | 
                 1  | 
                 Affinity Capture-RNA  | 
            
            
                | CCR4 | 
                 YAL021C  | 
                 Component of the CCR4-NOT transcriptional complex  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Synthetic Lethality  | 
            
            
                | EDE1 | 
                 YBL047C  | 
                 Scaffold protein involved in the formation of early endocytic sites  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Phenotypic Enhancement  | 
            
            
                | DHH1 | 
                 YDL160C  | 
                 Cytoplasmic DEAD-box helicase and mRNA decapping activator  | 
                 physical | 
                 1  | 
                 1  | 
                 1  | 
                 Affinity Capture-RNA  | 
            
            
                | AEP2 | 
                 YMR282C  | 
                 Mitochondrial protein  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | ISW1 | 
                 YBR245C  | 
                 ATPase subunit of imitation-switch (ISWI) class chromatin remodelers  | 
                 physical | 
                 1  | 
                 1  | 
                 1  | 
                 Affinity Capture-RNA  | 
            
            
                | EGD2 | 
                 YHR193C  | 
                 Alpha subunit of the nascent polypeptide-associated complex (NAC)  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Synthetic Growth Defect  | 
            
            
                | ECM11 | 
                 YDR446W  | 
                 Meiosis-specific protein  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Positive Genetic  | 
            
            
                | AGP2 | 
                 YBR132C  | 
                 Plasma membrane regulator of polyamine and carnitine transport  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | GEM1 | 
                 YAL048C  | 
                 Outer mitochondrial membrane GTPase, subunit of the ERMES complex  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | KIP3 | 
                 YGL216W  | 
                 Kinesin-related antiparallel sliding motor protein  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Positive Genetic  | 
            
            
                | AVL9 | 
                 YLR114C  | 
                 Conserved protein involved in exocytic transport from the Golgi  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | MCO32 | 
                 YGR053C  | 
                 Putative protein of unknown function  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | DCV1 | 
                 YFR012W  | 
                 Protein of unknown function  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Positive Genetic  | 
            
            
                | BIO5 | 
                 YNR056C  | 
                 Putative transmembrane protein involved in the biotin biosynthesis  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | LCL3 | 
                 YGL085W  | 
                 Putative protein of unknown function  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | SSC1 | 
                 YJR045C  | 
                 Hsp70 family ATPase  | 
                 physical | 
                 1  | 
                 1  | 
                 1  | 
                 Affinity Capture-MS  | 
            
            
                | PUF2 | 
                 YPR042C  | 
                 PUF family mRNA-binding protein  | 
                 physical | 
                 1  | 
                 1  | 
                 1  | 
                 Affinity Capture-RNA  | 
            
            
                | POP2 | 
                 YNR052C  | 
                 Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Synthetic Lethality  | 
            
            
                | STH1 | 
                 YIL126W  | 
                 ATPase component of the RSC chromatin remodeling complex  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Synthetic Growth Defect  | 
            
            
                | SCH9 | 
                 YHR205W  | 
                 AGC family protein kinase  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Synthetic Growth Defect  | 
            
            
                | RIM1 | 
                 YCR028C-A  | 
                 ssDNA-binding protein essential for mitochondrial genome maintenance  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | QRI7 | 
                 YDL104C  | 
                 Protein involved in threonylcarbamoyl adenosine biosynthesis  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  | 
            
            
                | YPC1 | 
                 YBR183W  | 
                 Alkaline ceramidase  | 
                 genetic | 
                 1  | 
                 1  | 
                 1  | 
                 Negative Genetic  |