| FKH1 | YIL131C | Forkhead family transcription factor | regulation | 2 | 2 | 2 | chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 2 | 2 | 2 | chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments | 
            
                | RPD3 | YNL330C | Histone deacetylase, component of both the Rpd3S and Rpd3L complexes | genetic | 2 | 1 | 1 | Dosage Lethality, Dosage Lethality | 
            
                | SRS2 | YJL092W | DNA helicase and DNA-dependent ATPase | genetic | 2 | 1 | 1 | Dosage Lethality, Dosage Lethality | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | NRG1 | YDR043C | Transcriptional repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | UGA3 | YDL170W | Transcriptional activator for GABA-dependent induction of GABA genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | HAA1 | YPR008W | Transcriptional activator involved in adaptation to weak acid stress | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | RTF1 | YGL244W | Subunit of RNAPII-associated chromatin remodeling Paf1 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWC4 | YGR002C | Component of the Swr1p complex that incorporates Htz1p into chromatin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAT1 | YCR077C | Deadenylation-dependent mRNA-decapping factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNU56 | YDR240C | Component of U1 snRNP required for mRNA splicing via spliceosome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ARP3 | YJR065C | Essential component of the Arp2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDA1 | YGR245C | Protein required for actin organization and passage through Start | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CLP1 | YOR250C | Component of the cleavage and polyadenylation factor I (CF I) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CTK1 | YKL139W | Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | MED6 | YHR058C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMD1 | YGR074W | Core Sm protein Sm D1 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAF1 | YGR274C | TFIID subunit, involved in RNA pol II transcription initiation | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | SBP1 | YHL034C | Protein that binds eIF4G and has a role in repression of translation | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SOD2 | YHR008C | Mitochondrial manganese superoxide dismutase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ELM1 | YKL048C | Serine/threonine protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EXO70 | YJL085W | Subunit of the exocyst complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IME2 | YJL106W | Serine/threonine protein kinase involved in activation of meiosis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATG1 | YGL180W | Protein serine/threonine kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | OCA2 | YNL056W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CWC15 | YDR163W | Non-essential protein involved in pre-mRNA splicing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS8A | YBL072C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MCA1 | YOR197W | Ca2+-dependent cysteine protease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DBP6 | YNR038W | Essential protein involved in ribosome biogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AIM44 | YPL158C | Regulator of Cdc42p and Rho1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI2 | YPL076W | Protein involved in the synthesis of GlcNAc-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SOK1 | YDR006C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POC4 | YPL144W | Component of a heterodimeric Poc4p-Irc25p chaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS10A | YOR293W | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SHE1 | YBL031W | Mitotic spindle protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RTC1 | YOL138C | Subunit of SEACAT, a subcomplex of the SEA complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PHS1 | YJL097W | Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | QRI1 | YDL103C | UDP-N-acetylglucosamine pyrophosphorylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MZM1 | YDR493W | Protein required for assembly of the cytochrome bc(1) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRX20 | YFR045W | Putative mitochondrial transport protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TOP1 | YOL006C | Topoisomerase I | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | YIL054W | YIL054W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TUB4 | YLR212C | Gamma-tubulin | genetic | 1 | 1 | 1 | Synthetic Growth Defect |