| FKH1 | YIL131C | Forkhead family transcription factor | regulation | 3 | 2 | 3 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence, chromatin immunoprecipitation- exonuclease evidence | 
            
                | ACE2 | YLR131C | Transcription factor required for septum destruction after cytokinesis | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MSN2 | YMR037C | Stress-responsive transcriptional activator | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | STB1 | YNL309W | Protein with role in regulation of MBF-specific transcription at Start | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SKN7 | YHR206W | Nuclear response regulator and transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SWI4 | YER111C | DNA binding component of the SBF complex (Swi4p-Swi6p) | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SPT2 | YER161C | Protein involved in negative regulation of transcription | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | ASH1 | YKL185W | Component of the Rpd3L histone deacetylase complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SWI6 | YLR182W | Transcription cofactor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | NDD1 | YOR372C | Transcriptional activator essential for nuclear division | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MBP1 | YDL056W | Transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SOK2 | YMR016C | Nuclear protein that negatively regulates pseudohyphal differentiation | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | DAL82 | YNL314W | Positive regulator of allophanate inducible genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | PHD1 | YKL043W | Transcriptional activator that enhances pseudohyphal growth | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RLM1 | YPL089C | MADS-box transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | GWT1 | YJL091C | Protein involved in the inositol acylation of GlcN-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERO1 | YML130C | Thiol oxidase required for oxidative protein folding in the ER | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FYV8 | YGR196C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUP3 | YER094C | Beta 3 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC62 | YPL094C | Essential subunit of Sec63 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC63 | YOR254C | Essential subunit of Sec63 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLA1 | YBL007C | Cytoskeletal protein binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ROM2 | YLR371W | Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BCK1 | YJL095W | MAPKKK acting in the protein kinase C signaling pathway | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RNA1 | YMR235C | GTPase activating protein (GAP) for Gsp1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLT2 | YHR030C | Serine/threonine MAP kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NBP2 | YDR162C | Protein involved in the HOG (high osmolarity glycerol) pathway | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PKC1 | YBL105C | Protein serine/threonine kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VAM3 | YOR106W | Syntaxin-like vacuolar t-SNARE | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MCM1 | YMR043W | Transcription factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KAR2 | YJL034W | ATPase involved in protein import into the ER | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GAB1 | YLR459W | Subunit of the glycosylphosphatidylinositol transamidase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ROT1 | YMR200W | Molecular chaperone involved in protein folding in ER | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RGL1 | YPL066W | Regulator of Rho1p signaling, cofactor of Tus1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CWH41 | YGL027C | Processing alpha glucosidase I | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMP3 | YOR149C | Alpha 1,2-mannosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI10 | YGL142C | Integral membrane protein involved in GPI anchor synthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MSC1 | YML128C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ICE2 | YIL090W | Integral ER membrane protein with type-III transmembrane domains | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | KRE5 | YOR336W | Protein required for beta-1,6 glucan biosynthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YGL081W | YGL081W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPT6 | YLR262C | Rab family GTPase | genetic | 1 | 1 | 1 | Negative Genetic |