| FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | GCR2 | YNL199C | Transcriptional activator of genes involved in glycolysis | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MED4 | YOR174W | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | LEU3 | YLR451W | Zinc-knuckle transcription factor, repressor and activator | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | PEX19 | YDL065C | Chaperone and import receptor for newly-synthesized class I PMPs | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP19 | YLL036C | Splicing factor associated with the spliceosome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HAP5 | YOR358W | Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRT4 | YKL009W | Protein involved in mRNA turnover and ribosome assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | XRN1 | YGL173C | Evolutionarily-conserved 5'-3' exonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARP7 | YPR034W | Component of both the SWI/SNF and RSC chromatin remodeling complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DST1 | YGL043W | General transcription elongation factor TFIIS | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | NAM7 | YMR080C | ATP-dependent RNA helicase of the SFI superfamily | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | IML3 | YBR107C | Outer kinetochore protein and component of the Ctf19 complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MCD1 | YDL003W | Essential alpha-kleisin subunit of the cohesin complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL1 | YNL102W | Catalytic subunit of the DNA polymerase I alpha-primase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL12 | YBL035C | B subunit of DNA polymerase alpha-primase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LEA1 | YPL213W | Component of U2 snRNP complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NRD1 | YNL251C | RNA-binding subunit of Nrd1 complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CSI1 | YMR025W | Subunit of the Cop9 signalosome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGF29 | YCL010C | Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGV1 | YPR161C | Cyclin (Bur2p)-dependent protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCT6 | YDR188W | Subunit of the cytosolic chaperonin Cct ring complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PYC2 | YBR218C | Pyruvate carboxylase isoform | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PYC1 | YGL062W | Pyruvate carboxylase isoform | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | INM1 | YHR046C | Inositol monophosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GLE1 | YDL207W | Cytoplasmic nucleoporin required for polyadenylated mRNA export | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HIR1 | YBL008W | Subunit of the HIR complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NUP133 | YKR082W | Subunit of Nup84p subcomplex of nuclear pore complex (NPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAD4 | YER162C | Damaged-DNA binding subunit of Nuclear Excision Repair Factor 2 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRL2 | YLR082C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AIM18 | YHR198C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IES4 | YOR189W | Component of the INO80 chromatiin remodeling complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MCM1 | YMR043W | Transcription factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS8A | YBL072C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MIF2 | YKL089W | Centromeric CDEIII region binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TIM23 | YNR017W | Essential component of the TIM23 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STE50 | YCL032W | Adaptor protein for various signaling pathways | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DFG5 | YMR238W | Putative mannosidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SHG1 | YBR258C | Subunit of the COMPASS (Set1C) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TFC6 | YDR362C | Subunit of RNA polymerase III transcription initiation factor complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ETR1 | YBR026C | 2-enoyl thioester reductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAC1 | YKL212W | Phosphatidylinositol phosphate phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FMP46 | YKR049C | Putative redox protein containing a thioredoxin fold | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MGR1 | YCL044C | Subunit of the mitochondrial (mt) i-AAA protease supercomplex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GIS2 | YNL255C | Translational activator for mRNAs with internal ribosome entry sites | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | POM33 | YLL023C | Transmembrane nucleoporin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL6B | YLR448W | Ribosomal 60S subunit protein L6B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL8A | YHL033C | Ribosomal 60S subunit protein L8A | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMP3 | YOR149C | Alpha 1,2-mannosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC1 | YDR182W | Putative mannose-ethanolamine phosphate phosphodiesterase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEI1 | YLR404W | Seipin involved in lipid droplet (LD) assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PEX9 | YMR018W | Peroxisomal membrane signal receptor for peroxisomal matrix proteins | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YML018C | YML018C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ZRC1 | YMR243C | Vacuolar membrane zinc transporter | genetic | 1 | 1 | 1 | Negative Genetic |