| TAF1 | YGR274C | TFIID subunit, involved in RNA pol II transcription initiation | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | MGL2 | YMR210W | Monoacylglycerol and triacylglycerol lipase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | STE12 | YHR084W | Transcription factor that is activated by a MAPK signaling cascade | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | IXR1 | YKL032C | Transcriptional repressor that regulates hypoxic genes during normoxia | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | TEC1 | YBR083W | Transcription factor targeting filamentation genes and Ty1 expression | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | RGR1 | YLR071C | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CYC8 | YBR112C | General transcriptional co-repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | NOC3 | YLR002C | Subunit of a nuclear complex with Noc2p and pre-replicative complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DPB3 | YBR278W | Third-largest subunit of DNA polymerase II (DNA polymerase epsilon) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | LCB1 | YMR296C | Component of serine palmitoyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CSE2 | YNR010W | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CMR1 | YDL156W | Nuclear protein with role in transcription, protein quality control | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | INO4 | YOL108C | Transcription factor involved in phospholipid synthesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PTC4 | YBR125C | Cytoplasmic type 2C protein phosphatase (PP2C) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SUP45 | YBR143C | Polypeptide release factor (eRF1) in translation termination | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HEK2 | YBL032W | RNA binding protein involved in asymmetric localization of ASH1 mRNA | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CAF20 | YOR276W | Phosphoprotein of the mRNA cap-binding complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PST2 | YDR032C | FMN-dependent NAD(P)H:quinone oxidoreductase | physical | 1 | 1 | 1 | PCA | 
            
                | GPA2 | YER020W | Nucleotide binding alpha subunit of the heterotrimeric G protein | physical | 1 | 1 | 1 | PCA | 
            
                | SHP1 | YBL058W | UBX domain-containing substrate adaptor for Cdc48p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TEF4 | YKL081W | Gamma subunit of translational elongation factor eEF1B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATP5 | YDR298C | Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CTK3 | YML112W | Gamma subunit of C-terminal domain kinase I | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STU1 | YBL034C | Microtubule plus-end-tracking non-motor protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAD1 | YDR423C | AP-1-like basic leucine zipper (bZIP) transcriptional activator | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAN3 | YKL025C | Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LEU1 | YGL009C | Isopropylmalate isomerase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | GPI2 | YPL076W | Protein involved in the synthesis of GlcNAc-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMR1 | YGL167C | High affinity Ca2+/Mn2+ P-type ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIA1 | YNL163C | Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | LAG2 | YOL025W | Protein that negatively regulates the SCF E3-ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LIP5 | YOR196C | Protein involved in biosynthesis of the coenzyme lipoic acid | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FMP45 | YDL222C | Integral membrane protein localized to mitochondria | physical | 1 | 1 | 1 | PCA | 
            
                | PEX4 | YGR133W | Peroxisomal ubiquitin conjugating enzyme | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | WHI3 | YNL197C | RNA binding protein that modulates mRNA stability | physical | 1 | 1 | 1 | Protein-RNA | 
            
                | WSS1 | YHR134W | SUMO-ligase and SUMO-targeted metalloprotease | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YMC2 | YBR104W | Putative mitochondrial inner membrane transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YOR192C-C | YOR192C-C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRM2 | YGL136C | Mitochondrial 2' O-ribose methyltransferase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DIT2 | YDR402C | N-formyltyrosine oxidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RTS2 | YOR077W | Basic zinc-finger protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MNE1 | YOR350C | Protein involved in splicing Group I aI5-beta intron from COX1 mRNA | genetic | 1 | 1 | 1 | Negative Genetic |