| TUP1 | YCR084C | General repressor of transcription in complex with Cyc8p | regulation | 2 | 2 | 2 | chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RIM101 | YHL027W | Cys2His2 zinc-finger transcriptional repressor | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | YAP5 | YIR018W | Basic leucine zipper (bZIP) iron-sensing transcription factor | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | SKO1 | YNL167C | Basic leucine zipper transcription factor of the ATF/CREB family | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | BRE1 | YDL074C | E3 ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TPA1 | YER049W | Prolyl hydroxylase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | BUD14 | YAR014C | Protein involved in bud-site selection | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CTK1 | YKL139W | Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HAT1 | YPL001W | Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HAT2 | YEL056W | Subunit of the Hat1p-Hat2p histone acetyltransferase complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | HMO1 | YDR174W | Chromatin associated high mobility group (HMG) family member | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PUB1 | YNL016W | Poly (A)+ RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | FAR11 | YNL127W | Protein involved in recovery from cell cycle arrest | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPH1 | YPR160W | Glycogen phosphorylase required for the mobilization of glycogen | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HYP2 | YEL034W | Translation elongation factor eIF-5A | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMA2 | YPL036W | Plasma membrane H+-ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MMS22 | YLR320W | Subunit of E3 ubiquitin ligase complex involved in replication repair | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GDH2 | YDL215C | NAD(+)-dependent glutamate dehydrogenase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BAS1 | YKR099W | Myb-related transcription factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS8A | YBL072C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPC42 | YKL042W | Central plaque component of spindle pole body (SPB) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ADY4 | YLR227C | Structural component of the meiotic outer plaque | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification | 
            
                | EMP70 | YLR083C | Protein with a role in cellular adhesion and filamentous growth | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YAR010C | YAR010C | Retrotransposon TYA Gag gene co-transcribed with TYB Pol | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NAT5 | YOR253W | Subunit of protein N-terminal acetyltransferase NatA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRPL17 | YNL252C | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM8 | YGL045W | Protein involved in proteolytic activation of Rim101p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | UGO1 | YDR470C | Outer membrane component of the mitochondrial fusion machinery | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ZDS2 | YML109W | Protein with a role in regulating Swe1p-dependent polarized growth | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ZPS1 | YOL154W | Putative GPI-anchored protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YRA2 | YKL214C | Member of the REF (RNA and export factor binding proteins) family | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SPG5 | YMR191W | Protein required for proteasome assembly during quiescence | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ECM3 | YOR092W | Non-essential protein of unknown function | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS16A | YMR143W | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YAP1802 | YGR241C | Protein of the AP180 family, involved in clathrin cage assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GAS4 | YOL132W | 1,3-beta-glucanosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RBH1 | YJL181W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YHM2 | YMR241W | Citrate and oxoglutarate carrier protein | genetic | 1 | 1 | 1 | Negative Genetic |