| ARV1 | YLR242C | Cortical ER protein | genetic | 2 | 2 | 2 | Dosage Rescue, Negative Genetic | 
            
                | RIC1 | YLR039C | Protein involved in retrograde transport to the cis-Golgi network | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | LEM3 | YNL323W | Membrane protein of the plasma membrane and ER | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | COG6 | YNL041C | Component of the conserved oligomeric Golgi complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | OPI3 | YJR073C | Methylene-fatty-acyl-phospholipid synthase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | STE24 | YJR117W | Highly conserved zinc metalloprotease | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | VPS1 | YKR001C | Dynamin-like GTPase required for vacuolar sorting | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | TLG2 | YOL018C | Syntaxin-like t-SNARE | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GPI2 | YPL076W | Protein involved in the synthesis of GlcNAc-PI | genetic | 2 | 1 | 1 | Synthetic Rescue, Synthetic Rescue | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | UGA3 | YDL170W | Transcriptional activator for GABA-dependent induction of GABA genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CDC73 | YLR418C | Component of the Paf1p complex | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | RPN5 | YDL147W | Subunit of the CSN and 26S proteasome lid complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPN6 | YDL097C | Essential, non-ATPase regulatory subunit of the 26S proteasome lid | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRE2 | YPR103W | Beta 5 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRE3 | YJL001W | Beta 1 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | GLO3 | YER122C | ADP-ribosylation factor GTPase activating protein (ARF GAP) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | COG8 | YML071C | Component of the conserved oligomeric Golgi complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | HSC82 | YMR186W | Cytoplasmic chaperone of the Hsp90 family | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | HSP82 | YPL240C | Hsp90 chaperone | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | GET3 | YDL100C | Guanine nucleotide exchange factor for Gpa1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | GET2 | YER083C | Subunit of the GET complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RGP1 | YDR137W | Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IRE1 | YHR079C | Serine-threonine kinase and endoribonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM101 | YHL027W | Cys2His2 zinc-finger transcriptional repressor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPA2 | YMR267W | Mitochondrial inorganic pyrophosphatase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CHL1 | YPL008W | Probable DNA helicase | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | ELO3 | YLR372W | Elongase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CSG2 | YBR036C | Endoplasmic reticulum membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GYP1 | YOR070C | Cis-golgi GTPase-activating protein (GAP) for yeast Rabs | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMT1 | YDL095W | Protein O-mannosyltransferase of the ER membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMT4 | YJR143C | Protein O-mannosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HAC1 | YFL031W | Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERV14 | YGL054C | COPII-coated vesicle protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAC7 | YDR389W | GTPase activating protein (GAP) for Rho1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AUS1 | YOR011W | Plasma membrane sterol transporter of the ATP-binding cassette family | physical | 1 | 1 | 1 | PCA | 
            
                | ERI1 | YPL096C-A | Endoplasmic reticulum membrane protein that binds and inhibits Ras2p | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | ALG3 | YBL082C | Dolichol-P-Man dependent alpha(1-3) mannosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMR1 | YGL167C | High affinity Ca2+/Mn2+ P-type ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM21 | YNL294C | pH sensor molecule, component of the RIM101 pathway | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BST1 | YFL025C | GPI inositol deacylase of the endoplasmic reticulum (ER) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RUD3 | YOR216C | Golgi matrix protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CHS7 | YHR142W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CWH43 | YCR017C | GPI lipid remodelase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DNF2 | YDR093W | Aminophospholipid translocase (flippase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ILM1 | YJR118C | Protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | AVL9 | YLR114C | Conserved protein involved in exocytic transport from the Golgi | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NCW1 | YMR122W-A | Protein of unknown function | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | PSD1 | YNL169C | Phosphatidylserine decarboxylase of the mitochondrial inner membrane | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | NHX1 | YDR456W | Na+/H+ and K+/H+ exchanger | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS73 | YGL104C | Mitochondrial protein | physical | 1 | 1 | 1 | PCA | 
            
                | YIL102C-A | YIL102C-A | Regulatory subunit of dolichyl phosphate mannose (DPM) synthase | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | VPH2 | YKL119C | Integral membrane protein required for V-ATPase function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UPS1 | YLR193C | Phosphatidic acid transfer protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YPT6 | YLR262C | Rab family GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YDJ1 | YNL064C | Type I HSP40 co-chaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VMA11 | YPL234C | Vacuolar ATPase V0 domain subunit c' | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS27 | YNR006W | Endosomal protein that forms a complex with Hse1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SYS1 | YJL004C | Integral membrane protein of the Golgi | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS8 | YAL002W | Membrane-binding component of the CORVET complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS5 | YOR069W | Nexin-1 homolog | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS17 | YOR132W | Subunit of the membrane-associated retromer complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS21 | YOR089C | Endosomal Rab family GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CNE1 | YAL058W | Calnexin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MMM1 | YLL006W | ER integral membrane protein, ERMES complex subunit | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ALG8 | YOR067C | Glucosyl transferase | genetic | 1 | 1 | 1 | Negative Genetic |