| URA7 | YBL039C | Major CTP synthase isozyme (see also URA8) | genetic | 9 | 3 | 7 | Synthetic Lethality, Synthetic Lethality, Synthetic Growth Defect, Synthetic Lethality, Synthetic Lethality, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | CKB1 | YGL019W | Beta regulatory subunit of casein kinase 2 (CK2) | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SCS2 | YER120W | Integral ER membrane protein, regulates phospholipid metabolism | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SIC1 | YLR079W | Cyclin-dependent kinase inhibitor (CKI) | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | HPT1 | YDR399W | Dimeric hypoxanthine-guanine phosphoribosyltransferase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | URA8 | YJR103W | Minor CTP synthase isozyme (see also URA7) | physical | 2 | 2 | 2 | Two-hybrid, Co-localization | 
            
                | RVS161 | YCR009C | Amphiphysin-like lipid raft protein | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SMT1 | YJL147C | Translational repressor of the mitochondrial ATP6/8 mRNA | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | YIR016W | YIR016W | Putative protein of unknown function | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | URA7 | YBL039C | Major CTP synthase isozyme (see also URA8) | physical | 2 | 1 | 1 | Two-hybrid, Two-hybrid | 
            
                | MET6 | YER091C | Cobalamin-independent methionine synthase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | COA4 | YLR218C | Twin Cx(9)C protein involved in cytochrome c oxidase organization | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | MSP1 | YGR028W | Highly-conserved N-terminally anchored AAA-ATPase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | CIN5 | YOR028C | Basic leucine zipper (bZIP) transcription factor of the yAP-1 family | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | FHL1 | YPR104C | Regulator of ribosomal protein (RP) transcription | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | UME6 | YDR207C | Rpd3L histone deacetylase complex subunit | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | NAB3 | YPL190C | RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p) | regulation | 1 | 1 | 1 | quantitative reverse transcription polymerase chain reaction evidence | 
            
                | PKC1 | YBL105C | Protein serine/threonine kinase | regulation | 1 | 1 | 1 | enzymatic activity assay evidence | 
            
                | RPL10 | YLR075W | Ribosomal 60S subunit protein L10 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMX3 | YPR182W | Core Sm protein Sm F | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HAP5 | YOR358W | Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS4B | YHR203C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TMA64 | YDR117C | Protein of unknown function that associates with ribosomes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPN10 | YHR200W | Proteasome polyubiquitin receptor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CTK1 | YKL139W | Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DCP2 | YNL118C | Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FKS1 | YLR342W | Catalytic subunit of 1,3-beta-D-glucan synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRD1 | YPR112C | Essential conserved small ribosomal subunit (40s) synthesis factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HSC82 | YMR186W | Cytoplasmic chaperone of the Hsp90 family | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HRR25 | YPL204W | Conserved casein kinase, monopolin subunit | physical | 1 | 1 | 1 | Reconstituted Complex | 
            
                | HSP82 | YPL240C | Hsp90 chaperone | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NAB3 | YPL190C | RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p) | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | NRD1 | YNL251C | RNA-binding subunit of Nrd1 complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PUB1 | YNL016W | Poly (A)+ RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RAM1 | YDL090C | Beta subunit of the CAAX farnesyltransferase (FTase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MNN10 | YDR245W | Subunit of a Golgi mannosyltransferase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC25 | YLR310C | Membrane bound guanine nucleotide exchange factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDC1 | YDR469W | Subunit of the COMPASS (Set1C) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPH1 | YPR160W | Glycogen phosphorylase required for the mobilization of glycogen | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PHO84 | YML123C | High-affinity inorganic phosphate (Pi) transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PHO85 | YPL031C | Cyclin-dependent kinase | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | QCR2 | YPR191W | Subunit 2 of ubiquinol cytochrome-c reductase (Complex III) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TPS2 | YDR074W | Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BUL1 | YMR275C | Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RVS167 | YDR388W | Calmodulin-binding actin-associated protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FZO1 | YBR179C | Mitofusin, protein involved in mitochondrial outer membrane fusion | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPG1 | YNR032W | Serine protein phosphatase involved in formation of FAR complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM101 | YHL027W | Cys2His2 zinc-finger transcriptional repressor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRR2 | YDL214C | Serine/threonine protein kinase | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | DAS2 | YDR020C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPA2 | YMR267W | Mitochondrial inorganic pyrophosphatase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FIS1 | YIL065C | Protein involved in mitochondrial fission and peroxisome abundance | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NST1 | YNL091W | Translational inhibitor and suppressor of proteasome-assembly defects | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CEP3 | YMR168C | Essential kinetochore protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPL23B | YER117W | Ribosomal 60S subunit protein L23B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STB1 | YNL309W | Protein with role in regulation of MBF-specific transcription at Start | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GLN3 | YER040W | Transcriptional activator in nitrogen catabolite repression system | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CHS3 | YBR023C | Chitin synthase III | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification | 
            
                | RIO1 | YOR119C | Serine kinase involved in cell cycle regulation and rDNA integrity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL40B | YKR094C | Ubiquitin-ribosomal 60S subunit protein L40B fusion protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPC105 | YGL093W | Subunit of a kinetochore-microtubule binding complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM1 | YCR028C-A | ssDNA-binding protein essential for mitochondrial genome maintenance | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SBA1 | YKL117W | Co-chaperone that binds and regulates Hsp90 family chaperones | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ROT1 | YMR200W | Molecular chaperone involved in protein folding in ER | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPE2 | YOL052C | S-adenosylmethionine decarboxylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MSS18 | YPR134W | Nuclear encoded protein needed for splicing of mitochondrial intron | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CYT1 | YOR065W | Cytochrome c1 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | USE1 | YGL098W | Essential SNARE protein localized to the ER | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YEL1 | YBL060W | Guanine nucleotide exchange factor specific for Arf3p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPR003C | YPR003C | Putative sulfate permease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPS1 | YLR120C | Aspartic protease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YMR084W | YMR084W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RER2 | YBR002C | Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LGE1 | YPL055C | Protein involved in histone H2B ubiquitination | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COX7 | YMR256C | Subunit VII of cytochrome c oxidase (Complex IV) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FIT1 | YDR534C | Mannoprotein that is incorporated into the cell wall | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWS2 | YNL081C | Putative mitochondrial ribosomal protein of the small subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MSC1 | YML128C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRM2 | YGL136C | Mitochondrial 2' O-ribose methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RBK1 | YCR036W | Ribokinase, phosphorylates ribose to ribose-5-phosphate | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HMI1 | YOL095C | Mitochondrial inner membrane localized ATP-dependent DNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RSO55 | YLR281C | Mitochondrial protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MTC6 | YHR151C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SUC2 | YIL162W | Invertase | genetic | 1 | 1 | 1 | Negative Genetic |