| PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | HSP82 | YPL240C | Hsp90 chaperone | genetic | 2 | 1 | 2 | Synthetic Growth Defect, Synthetic Growth Defect | 
            
                | HSC82 | YMR186W | Cytoplasmic chaperone of the Hsp90 family | genetic | 2 | 1 | 2 | Synthetic Growth Defect, Synthetic Growth Defect | 
            
                | MOB2 | YFL034C-B | Activator of Cbk1p kinase | genetic | 2 | 2 | 1 | Positive Genetic, Negative Genetic | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RFX1 | YLR176C | Major transcriptional repressor of DNA-damage-regulated genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | NDC1 | YML031W | Subunit of the transmembrane ring of the nuclear pore complex (NPC) | physical | 1 | 1 | 1 | PCA | 
            
                | YOR1 | YGR281W | Plasma membrane ATP-binding cassette (ABC) transporter | physical | 1 | 1 | 1 | PCA | 
            
                | VAM6 | YDL077C | Guanine nucleotide exchange factor for the GTPase Gtr1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ATP23 | YNR020C | Putative metalloprotease of the mitochondrial inner membrane | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PUB1 | YNL016W | Poly (A)+ RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | AKR1 | YDR264C | Palmitoyl transferase involved in protein palmitoylation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIA1 | YNL163C | Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPA2 | YMR267W | Mitochondrial inorganic pyrophosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GAS1 | YMR307W | Beta-1,3-glucanosyltransferase required for cell wall assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ALG6 | YOR002W | ER-luminal alpha 1,3 glucosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDO1 | YLR022C | Guanine nucleotide exchange factor (GEF) for Ria1p | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | NPL3 | YDR432W | RNA-binding protein | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | GCD11 | YER025W | Gamma subunit of the translation initiation factor eIF2 | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC24 | YIL109C | Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MAK11 | YKL021C | Protein involved in an early step of 60S ribosomal subunit biogenesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | UGP1 | YKL035W | UDP-glucose pyrophosphorylase (UGPase) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DHR2 | YKL078W | Predominantly nucleolar DEAH-box ATP-dependent RNA helicase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RLP24 | YLR009W | Essential protein required for ribosomal large subunit biogenesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PRP19 | YLL036C | Splicing factor associated with the spliceosome | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MCM1 | YMR043W | Transcription factor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BSC1 | YDL037C | Protein of unconfirmed function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DSD1 | YGL196W | D-serine dehydratase (aka D-serine ammonia-lyase) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | IRC19 | YLL033W | Protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MSN1 | YOL116W | Transcriptional activator | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | HEM12 | YDR047W | Uroporphyrinogen decarboxylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TFB1 | YDR311W | Subunit of TFIIH and nucleotide excision repair factor 3 complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRE4 | YFR050C | Beta 7 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | APC1 | YNL172W | Largest subunit of the Anaphase-Promoting Complex/Cyclosome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK16 | YAL025C | Essential nuclear protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC15 | YAR019C | Hippo-like kinase of the Mitotic Exit Network | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RFC5 | YBR087W | Subunit of heteropentameric Replication factor C (RF-C) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CMD1 | YBR109C | Calmodulin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK5 | YBR142W | Essential nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC10 | YCR002C | Component of the septin ring, required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPT2 | YDL007W | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | APC11 | YDL008W | Catalytic core subunit, Anaphase-Promoting Complex/Cyclosome (APC/C) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC7 | YDL017W | S/T kinase and catalytic subunit of DDK (Dbf4-dependent kinase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARP2 | YDL029W | Essential component of the Arp2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC48 | YDL126C | AAA ATPase with protein-unfoldase activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GLE1 | YDL207W | Cytoplasmic nucleoporin required for polyadenylated mRNA export | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC13 | YDL220C | Single stranded DNA-binding protein found at TG1-3 telomere G-tails | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLU7 | YDR088C | RNA splicing factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAB5 | YDR196C | Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNU56 | YDR240C | Component of U1 snRNP required for mRNA splicing via spliceosome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPC110 | YDR356W | Inner plaque spindle pole body (SPB) component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI17 | YDR434W | Transmembrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UTP6 | YDR449C | Nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TSC11 | YER093C | Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RSP5 | YER125W | NEDD4 family E3 ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC4 | YFL009W | F-box protein required for both the G1/S and G2/M phase transitions | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GNA1 | YFL017C | Glucosamine-6-phosphate acetyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC14 | YFR028C | Protein phosphatase required for mitotic exit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SCL1 | YGL011C | Alpha 1 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPT6 | YGL048C | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRM1 | YGL097W | Nucleotide exchange factor for Gsp1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC20 | YGL116W | Activator of anaphase-promoting complex/cyclosome (APC/C) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWC4 | YGR002C | Component of the Swr1p complex that incorporates Htz1p into chromatin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TEL2 | YGR099W | Subunit of the ASTRA complex, involved in chromatin remodeling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NUP57 | YGR119C | FG-nucleoporin component of central core of the nuclear pore complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TIM44 | YIL022W | Essential component of the TIM23 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MET30 | YIL046W | F-box protein containing five copies of the WD40 motif | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NEO1 | YIL048W | Phospholipid translocase (flippase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARC15 | YIL062C | Subunit of the ARP2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | OST1 | YJL002C | Alpha subunit of the oligosaccharyltransferase complex of the ER lumen | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PHS1 | YJL097W | Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRE9 | YJL174W | Glycoprotein involved in cell wall beta-glucan assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWD2 | YKL018W | Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GFA1 | YKL104C | Glutamine-fructose-6-phosphate amidotransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HYM1 | YKL189W | Component of the RAM signaling network | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC123 | YLR215C | Assembly factor for the eIF2 translation initiation factor complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC3 | YLR314C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAF4 | YMR005W | TFIID subunit (48 kDa) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL1 | YNL102W | Catalytic subunit of the DNA polymerase I alpha-primase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NUF2 | YOL069W | Component of the kinetochore-associated Ndc80 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TPT1 | YOL102C | tRNA 2'-phosphotransferase that catalyzes final step in tRNA splicing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HRP1 | YOL123W | Subunit of cleavage factor I | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAT1 | YOR048C | Nuclear 5' to 3' single-stranded RNA exonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ALA1 | YOR335C | Cytoplasmic and mitochondrial alanyl-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC60 | YPL160W | Cytosolic leucyl tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MEX67 | YPL169C | Poly(A)RNA binding protein involved in nuclear mRNA export | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ORC4 | YPR162C | Subunit of the origin recognition complex (ORC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FIG1 | YBR040W | Integral membrane protein required for efficient mating | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RML2 | YEL050C | Mitochondrial ribosomal protein of the large subunit (L2) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ECM4 | YKR076W | S-glutathionyl-(chloro)hydroquinone reductase (GS-HQR) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPH21 | YDL134C | Catalytic subunit of protein phosphatase 2A, PP2A | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPS10A | YOR293W | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RTG3 | YBL103C | bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC73 | YLR418C | Component of the Paf1p complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSN8 | YNL025C | Cyclin-like component of RNA polymerase II holoenzyme | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DCK1 | YLR422W | Dock family protein (Dedicator Of CytoKinesis), homolog of human DOCK1 | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SIN3 | YOL004W | Component of both the Rpd3S and Rpd3L histone deacetylase complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | genetic | 1 | 1 | 1 | Dosage Lethality | 
            
                | GPD1 | YDL022W | NAD-dependent glycerol-3-phosphate dehydrogenase | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | PEX5 | YDR244W | Peroxisomal membrane signal receptor for peroxisomal matrix proteins | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | MDH3 | YDL078C | Peroxisomal malate dehydrogenase | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | CIT2 | YCR005C | Citrate synthase, peroxisomal isozyme involved in glyoxylate cycle | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | ODC1 | YPL134C | Mitochondrial inner membrane transporter | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | TUB4 | YLR212C | Gamma-tubulin | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | PEX34 | YCL056C | Protein that regulates peroxisome populations | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | PEX11 | YOL147C | Peroxisomal protein required for medium-chain fatty acid oxidation | genetic | 1 | 1 | 1 | Dosage Rescue |