Standard name Systematic name Name description Description
LSM5 YER146W Lsm (Like Sm) protein Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA
Visualize the interactome of LSM5
Links to external databases:
  SGD   |   KEGG   |  

Cell cycle phase and timing of transcription peak

Cell cycle phase Time (min)

CYCLoPs localization & abundance

WT1 WT2 WT3
no data no data no data

GFP localization & abundance

GFP localization GFP abundance
no data no data

GO term count

Metabolism Cell cycle Cell division Signal transduction DNA replication
LSM5 2 0 0 0 0

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.
Standard name Systematic name Name description Type #Experiments #Methods #Publications Evidence
LSM1 YJL124C Lsm (Like Sm) protein physical 17 4 13 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Two-hybrid, Affinity Capture-Western, Affinity Capture-Western, Two-hybrid, Two-hybrid, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-purification, Two-hybrid, Co-purification, Affinity Capture-MS, Affinity Capture-Western, Co-purification
PAT1 YCR077C Deadenylation-dependent mRNA-decapping factor physical 10 4 10 Affinity Capture-MS, Affinity Capture-MS, Two-hybrid, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex
LSM3 YLR438C-A Lsm (Like Sm) protein physical 8 4 8 Two-hybrid, Affinity Capture-MS, Two-hybrid, Affinity Capture-MS, Reconstituted Complex, Two-hybrid, Affinity Capture-MS, Affinity Capture-Western
LSM2 YBL026W Lsm (Like Sm) protein physical 7 3 6 Affinity Capture-MS, Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Affinity Capture-MS, Affinity Capture-Western
BRR2 YER172C RNA-dependent ATPase RNA helicase (DEIH box) physical 6 3 6 Affinity Capture-MS, Co-purification, Co-purification, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS
LSM6 YDR378C Lsm (Like Sm) protein physical 6 2 5 Affinity Capture-MS, Two-hybrid, Two-hybrid, Two-hybrid, Affinity Capture-MS, Two-hybrid
LSM8 YJR022W Lsm (Like Sm) protein physical 5 2 4 Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Affinity Capture-MS
LSM7 YNL147W Lsm (Like Sm) protein physical 5 2 4 Two-hybrid, Two-hybrid, Two-hybrid, Co-localization, Two-hybrid
LSM4 YER112W Lsm (Like Sm) protein physical 5 3 3 Two-hybrid, Two-hybrid, Two-hybrid, Affinity Capture-Western, Affinity Capture-MS
PRP24 YMR268C Splicing factor that reanneals snRNPs during spliceosome recycling physical 4 4 4 Two-hybrid, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-Western
PRP8 YHR165C Component of U4/U6-U5 snRNP complex physical 4 1 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
XRN1 YGL173C Evolutionarily-conserved 5'-3' exonuclease physical 3 1 3 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
FKH2 YNL068C Forkhead family transcription factor regulation 2 2 2 chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
SMD2 YLR275W Core Sm protein Sm D2 physical 2 2 2 Two-hybrid, Affinity Capture-MS
MFA2 YNL145W Mating pheromone a-factor physical 2 2 2 Affinity Capture-RNA, Protein-RNA
RPL41A YDL184C Ribosomal 60S subunit protein L41A physical 2 2 2 Affinity Capture-RNA, Protein-RNA
DCP1 YOL149W Subunit of the Dcp1p-Dcp2p decapping enzyme complex physical 2 2 2 Affinity Capture-Western, Affinity Capture-MS
DHH1 YDL160C Cytoplasmic DEAD-box helicase and mRNA decapping activator physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
FKH1 YIL131C Forkhead family transcription factor regulation 2 1 2 chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
PRP4 YPR178W Splicing factor physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
PRP6 YBR055C Splicing factor physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
SNU114 YKL173W GTPase component of U5 snRNP involved in mRNA splicing via spliceosome physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
AFT2 YPL202C Iron-regulated transcriptional activator regulation 1 1 1 chromatin immunoprecipitation-chip evidence
REB1 YBR049C RNA polymerase I enhancer binding protein regulation 1 1 1 chromatin immunoprecipitation-chip evidence
NRG1 YDR043C Transcriptional repressor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
SWI4 YER111C DNA binding component of the SBF complex (Swi4p-Swi6p) regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CST6 YIL036W Basic leucine zipper (bZIP) transcription factor from ATF/CREB family regulation 1 1 1 DNA to cDNA expression microarray evidence
MAC1 YMR021C Copper-sensing transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
AFT1 YGL071W Transcription factor involved in iron utilization and homeostasis regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CLF1 YLR117C Member of the NineTeen Complex (NTC) physical 1 1 1 Affinity Capture-MS
NEO1 YIL048W Phospholipid translocase (flippase) physical 1 1 1 Two-hybrid
NOT3 YIL038C Component of the CCR4-NOT core complex, involved in mRNA decapping physical 1 1 1 Two-hybrid
MRM1 YOR201C Ribose methyltransferase physical 1 1 1 Two-hybrid
PRP24 YMR268C Splicing factor that reanneals snRNPs during spliceosome recycling genetic 1 1 1 Dosage Rescue
RPA135 YPR010C RNA polymerase I second largest subunit A135 physical 1 1 1 Two-hybrid
RPS26B YER131W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Two-hybrid
RPS6A YPL090C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Two-hybrid
RRD2 YPL152W Peptidyl-prolyl cis/trans-isomerase physical 1 1 1 Two-hybrid
SHM2 YLR058C Cytosolic serine hydroxymethyltransferase physical 1 1 1 Two-hybrid
STE6 YKL209C Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Two-hybrid
TRM3 YDL112W 2'-O-ribose methyltransferase physical 1 1 1 Two-hybrid
SLM5 YCR024C Mitochondrial asparaginyl-tRNA synthetase physical 1 1 1 Two-hybrid
YFL066C YFL066C Helicase-like protein encoded within the telomeric Y' element physical 1 1 1 Two-hybrid
YGR210C YGR210C Putative protein of unknown function physical 1 1 1 Two-hybrid
YHL008C YHL008C Putative protein of unknown function physical 1 1 1 Two-hybrid
RPL1A YPL220W Ribosomal 60S subunit protein L1A physical 1 1 1 Affinity Capture-RNA
RPP2B YDR382W Ribosomal protein P2 beta physical 1 1 1 Affinity Capture-RNA
RPL28 YGL103W Ribosomal 60S subunit protein L28 physical 1 1 1 Affinity Capture-RNA
LSM5 YER146W Lsm (Like Sm) protein physical 1 1 1 Two-hybrid
SMX2 YFL017W-A Core Sm protein Sm G physical 1 1 1 Affinity Capture-MS
YNL092W YNL092W S-adenosylmethionine-dependent protein methyltransferase physical 1 1 1 Affinity Capture-MS
PGK1 YCR012W 3-phosphoglycerate kinase physical 1 1 1 Protein-RNA
SMY2 YBR172C GYF domain protein physical 1 1 1 Affinity Capture-MS
SNU66 YOR308C Component of the U4/U6.U5 snRNP complex physical 1 1 1 Affinity Capture-MS
SMB1 YER029C Core Sm protein Sm B physical 1 1 1 Affinity Capture-MS
SLF1 YDR515W RNA binding protein that associates with polysomes physical 1 1 1 Affinity Capture-RNA
SRO9 YCL037C Cytoplasmic RNA-binding protein physical 1 1 1 Affinity Capture-RNA
SCD6 YPR129W Repressor of translation initiation physical 1 1 1 Affinity Capture-MS
MLP2 YIL149C Myosin-like protein associated with the nuclear envelope physical 1 1 1 Affinity Capture-MS
SSB2 YNL209W Cytoplasmic ATPase that is a ribosome-associated molecular chaperone physical 1 1 1 Co-purification
VAM6 YDL077C Guanine nucleotide exchange factor for the GTPase Gtr1p physical 1 1 1 Affinity Capture-MS
MPT5 YGL178W mRNA-binding protein of the PUF family physical 1 1 1 Affinity Capture-RNA
NAM7 YMR080C ATP-dependent RNA helicase of the SFI superfamily physical 1 1 1 Affinity Capture-MS
NMD4 YLR363C Protein that may be involved in nonsense-mediated mRNA decay physical 1 1 1 Affinity Capture-MS
STL1 YDR536W Glycerol proton symporter of the plasma membrane physical 1 1 1 Affinity Capture-RNA
SRP40 YKR092C Nucleolar serine-rich protein genetic 1 1 1 Dosage Rescue
LSM3 YLR438C-A Lsm (Like Sm) protein genetic 1 1 1 Synthetic Growth Defect
IML1 YJR138W GTPase-activating protein (GAP) subunit of the Iml1p/SEACIT complex physical 1 1 1 Two-hybrid
CSL4 YNL232W Exosome non-catalytic core component genetic 1 1 1 Synthetic Rescue
GCD11 YER025W Gamma subunit of the translation initiation factor eIF2 physical 1 1 1 Two-hybrid
CCR4 YAL021C Component of the CCR4-NOT transcriptional complex physical 1 1 1 Affinity Capture-RNA
LHP1 YDL051W RNA binding protein required for maturation of tRNA and U6 snRNA genetic 1 1 1 Synthetic Lethality
GCN3 YKR026C Alpha subunit of translation initiation factor eIF2B physical 1 1 1 Two-hybrid
KRR1 YCL059C Nucleolar protein required for rRNA synthesis and ribosomal assembly physical 1 1 1 Affinity Capture-MS
LSM2 YBL026W Lsm (Like Sm) protein genetic 1 1 1 Synthetic Growth Defect
GPD1 YDL022W NAD-dependent glycerol-3-phosphate dehydrogenase physical 1 1 1 Affinity Capture-RNA
GDB1 YPR184W Glycogen debranching enzyme physical 1 1 1 Two-hybrid
CWC21 YDR482C Protein involved in RNA splicing by the spliceosome physical 1 1 1 Affinity Capture-MS
ATG1 YGL180W Protein serine/threonine kinase genetic 1 1 1 Dosage Growth Defect
ALY2 YJL084C Alpha arrestin, Ub-ligase adaptor for Rsp5p physical 1 1 1 Two-hybrid
FOB1 YDR110W Nucleolar protein that binds the rDNA replication fork barrier site physical 1 1 1 Two-hybrid
GNT1 YOR320C N-acetylglucosaminyltransferase physical 1 1 1 Two-hybrid
GIS2 YNL255C Translational activator for mRNAs with internal ribosome entry sites physical 1 1 1 Affinity Capture-RNA
APJ1 YNL077W Hsp40 chaperone with a role in SUMO-mediated protein degradation physical 1 1 1 Affinity Capture-MS