| PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 4 | 1 | 4 | Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 2 | 2 | 2 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence | 
            
                | MRPS5 | YBR251W | Mitochondrial ribosomal protein of the small subunit | physical | 2 | 2 | 2 | Affinity Capture-MS, Co-fractionation | 
            
                | MPT5 | YGL178W | mRNA-binding protein of the PUF family | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | ATP2 | YJR121W | Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase | genetic | 2 | 1 | 1 | Synthetic Rescue, Synthetic Rescue | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | REB1 | YBR049C | RNA polymerase I enhancer binding protein | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MED4 | YOR174W | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CKA1 | YIL035C | Alpha catalytic subunit of casein kinase 2 (CK2) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CAP1 | YKL007W | Alpha subunit of the capping protein heterodimer (Cap1p and Cap2p) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FKS1 | YLR342W | Catalytic subunit of 1,3-beta-D-glucan synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GCN1 | YGL195W | Positive regulator of the Gcn2p kinase activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | RSM25 | YIL093C | Mitochondrial ribosomal protein of the small subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MRPL8 | YJL063C | Mitochondrial ribosomal protein of the large subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RSM7 | YJR113C | Mitochondrial ribosomal protein of the small subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PTK2 | YJR059W | Serine/threonine protein kinase | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | SKM1 | YOL113W | Member of the PAK family of serine/threonine protein kinases | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SLF1 | YDR515W | RNA binding protein that associates with polysomes | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SRO9 | YCL037C | Cytoplasmic RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PET54 | YGR222W | Mitochondrial inner membrane protein | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | MSS51 | YLR203C | Specific translational activator for the mitochondrial COX1 mRNA | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | TIM23 | YNR017W | Essential component of the TIM23 complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PIK1 | YNL267W | Phosphatidylinositol 4-kinase | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | TAF1 | YGR274C | TFIID subunit, involved in RNA pol II transcription initiation | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | QCR9 | YGR183C | Subunit 9 of ubiquinol cytochrome-c reductase (Complex III) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PRM2 | YIL037C | Pheromone-regulated protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ZRT3 | YKL175W | Vacuolar membrane zinc transporter | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YEH1 | YLL012W | Steryl ester hydrolase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | UBI4 | YLL039C | Ubiquitin | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PEX12 | YMR026C | C3HC4-type RING-finger peroxin and E3 ubiquitin ligase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RCE1 | YMR274C | Type II CAAX prenyl protease | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SCW10 | YMR305C | Cell wall protein with similarity to glucanases | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | NMA111 | YNL123W | Serine protease and general molecular chaperone | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VPS27 | YNR006W | Endosomal protein that forms a complex with Hse1p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SWC3 | YAL011W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TDA8 | YAL064C-A | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YAR029W | YAR029W | Member of DUP240 gene family but contains no transmembrane domains | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRM9 | YAR031W | Pheromone-regulated protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YEL1 | YBL060W | Guanine nucleotide exchange factor specific for Arf3p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPK3 | YBR028C | AGC kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPO23 | YBR250W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SHG1 | YBR258C | Subunit of the COMPASS (Set1C) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YCL042W | YCL042W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TMS1 | YDR105C | Vacuolar membrane protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PKH3 | YDR466W | Protein kinase with similarity to mammalian PDK1 and yeast Pkh1p/Phk2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPS2 | YDR522C | Protein expressed during sporulation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UBP5 | YER144C | Putative ubiquitin-specific protease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM8 | YGL045W | Protein involved in proteolytic activation of Rim101p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGF73 | YGL066W | Subunit of DUBm module of SAGA and SLIK | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAE2 | YGL175C | Endonuclease required for telomere elongation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPS5 | YGL259W | Protein with similarity to GPI-anchored aspartic proteases | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SKN1 | YGR143W | Protein involved in sphingolipid biosynthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TDA10 | YGR205W | ATP-binding protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNF6 | YHL025W | Subunit of the SWI/SNF chromatin remodeling complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUT2 | YHR037W | Delta-1-pyrroline-5-carboxylate dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NCA3 | YJL116C | Protein involved in mitochondrion organization | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAC1 | YKL212W | Phosphatidylinositol phosphate phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RHO4 | YKR055W | Non-essential small GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRL3 | YKR091W | Repressor of transcription at Start | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRP40 | YKR092C | Nucleolar serine-rich protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NFT1 | YKR103W | Putative transporter of the MRP subfamily | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAD5 | YLR032W | DNA helicase/Ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPS1 | YLR120C | Aspartic protease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RNH203 | YLR154C | Ribonuclease H2 subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UPS1 | YLR193C | Phosphatidic acid transfer protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NEJ1 | YLR265C | DNA end-binding protein required for nonhomologous end joining (NHEJ) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL31B | YLR406C | Ribosomal 60S subunit protein L31B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL6B | YLR448W | Ribosomal 60S subunit protein L6B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YML020W | YML020W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TSA1 | YML028W | Thioredoxin peroxidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YML119W | YML119W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RCH1 | YMR034C | Negative regulator of cytosolic calcium homeostasis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PFK2 | YMR205C | Beta subunit of heterooctameric phosphofructokinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SIN3 | YOL004W | Component of both the Rpd3S and Rpd3L histone deacetylase complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MSN1 | YOL116W | Transcriptional activator | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YOL131W | YOL131W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PDR10 | YOR328W | ATP-binding cassette (ABC) transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SYH1 | YPL105C | Protein of unknown function that influences nuclear pore distribution | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RTT10 | YPL183C | WD40 domain-containing protein involved in endosomal recycling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CMR1 | YDL156W | Nuclear protein with role in transcription, protein quality control | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATG3 | YNR007C | E2-like enzyme | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAM33 | YIL070C | Acidic protein of the mitochondrial matrix | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GCN20 | YFR009W | Positive regulator of the Gcn2p kinase activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ILV1 | YER086W | Threonine deaminase, catalyzes first step in isoleucine biosynthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IRA2 | YOL081W | GTPase-activating protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRE11 | YMR224C | Nuclease subunit of the MRX complex with Rad50p and Xrs2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BEM4 | YPL161C | Protein involved in establishment of cell polarity and bud emergence | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ELG1 | YOR144C | Subunit of an alternative replication factor C complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FIG1 | YBR040W | Integral membrane protein required for efficient mating | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | GTR1 | YML121W | Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CUE2 | YKL090W | Ubiquitin-binding endonuclease involved in mRNA decay | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HMT1 | YBR034C | Nuclear SAM-dependent mono- and asymmetric methyltransferase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | FMO1 | YHR176W | Flavin-containing monooxygenase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | AGP2 | YBR132C | Plasma membrane regulator of polyamine and carnitine transport | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ADE16 | YLR028C | Enzyme of 'de novo' purine biosynthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GEM1 | YAL048C | Outer mitochondrial membrane GTPase, subunit of the ERMES complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GSH1 | YJL101C | Gamma glutamylcysteine synthetase | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | AIM29 | YKR074W | Protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CMK2 | YOL016C | Calmodulin-dependent protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ITR1 | YDR497C | Myo-inositol transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ADK2 | YER170W | Mitochondrial adenylate kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FMC1 | YIL098C | Mitochondrial matrix protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ECM4 | YKR076W | S-glutathionyl-(chloro)hydroquinone reductase (GS-HQR) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BMT6 | YLR063W | Methyltransferase required for m3U2843 methylation of the 25S rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MGR2 | YPL098C | Subunit of the TIM23 translocase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ICT1 | YLR099C | Lysophosphatidic acid acyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FLO10 | YKR102W | Member of the FLO family of cell wall flocculation proteins | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ECM8 | YBR076W | Non-essential protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic |