| VMA1 | YDL185W | Subunit A of the V1 peripheral membrane domain of V-ATPase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | HYP2 | YEL034W | Translation elongation factor eIF-5A | genetic | 2 | 1 | 2 | Dosage Rescue, Dosage Rescue | 
            
                | STE12 | YHR084W | Transcription factor that is activated by a MAPK signaling cascade | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RFX1 | YLR176C | Major transcriptional repressor of DNA-damage-regulated genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | TEC1 | YBR083W | Transcription factor targeting filamentation genes and Ty1 expression | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | HFI1 | YPL254W | Adaptor protein required for structural integrity of the SAGA complex | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | SPT20 | YOL148C | Subunit of the SAGA transcriptional regulatory complex | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | YAP5 | YIR018W | Basic leucine zipper (bZIP) iron-sensing transcription factor | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | ASH1 | YKL185W | Component of the Rpd3L histone deacetylase complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CWC25 | YNL245C | Splicing factor required for the first step of pre-mRNA splicing | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | POP4 | YBR257W | Subunit of both RNase MRP and nuclear RNase P | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BRR2 | YER172C | RNA-dependent ATPase RNA helicase (DEIH box) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPN6 | YDL097C | Essential, non-ATPase regulatory subunit of the 26S proteasome lid | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FKS1 | YLR342W | Catalytic subunit of 1,3-beta-D-glucan synthase | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | KGD2 | YDR148C | Dihydrolipoyl transsuccinylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LPD1 | YFL018C | Dihydrolipoamide dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BCK1 | YJL095W | MAPKKK acting in the protein kinase C signaling pathway | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | FLC2 | YAL053W | Putative calcium channel involved in calcium release under hypotonic | physical | 1 | 1 | 1 | PCA | 
            
                | HEK2 | YBL032W | RNA binding protein involved in asymmetric localization of ASH1 mRNA | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | GPP1 | YIL053W | Constitutively expressed DL-glycerol-3-phosphate phosphatase | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | RHO1 | YPR165W | GTP-binding protein of the rho subfamily of Ras-like proteins | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | SSK2 | YNR031C | MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | GPA2 | YER020W | Nucleotide binding alpha subunit of the heterotrimeric G protein | physical | 1 | 1 | 1 | PCA | 
            
                | GPP2 | YER062C | DL-glycerol-3-phosphate phosphatase involved in glycerol biosynthesis | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CHS1 | YNL192W | Chitin synthase I | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAS2 | YNL098C | GTP-binding protein | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | EAP1 | YKL204W | eIF4E-associated protein, competes with eIF4G for binding to eIF4E | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CLN2 | YPL256C | G1 cyclin involved in regulation of the cell cycle | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BIR1 | YJR089W | Subunit of chromosomal passenger complex (CPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STE11 | YLR362W | Signal transducing MEK kinase | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | PKC1 | YBL105C | Protein serine/threonine kinase | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | FOB1 | YDR110W | Nucleolar protein that binds the rDNA replication fork barrier site | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PEX14 | YGL153W | Central component of the peroxisomal importomer complex | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | SWD2 | YKL018W | Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DBF4 | YDR052C | Regulatory subunit of Cdc7p-Dbf4p kinase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KAR9 | YPL269W | Spindle positioning factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MID2 | YLR332W | O-glycosylated plasma membrane protein | physical | 1 | 1 | 1 | PCA | 
            
                | SPO74 | YGL170C | Component of the meiotic outer plaque of the spindle pole body | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PDR12 | YPL058C | Plasma membrane ATP-binding cassette (ABC) transporter | physical | 1 | 1 | 1 | PCA | 
            
                | MRC1 | YCL061C | S-phase checkpoint protein required for DNA replication | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HNM1 | YGL077C | Plasma membrane transporter for choline, ethanolamine, and carnitine | physical | 1 | 1 | 1 | PCA | 
            
                | VMA21 | YGR105W | Integral membrane protein required for V-ATPase function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PGS1 | YCL004W | Phosphatidylglycerolphosphate synthase | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | RFS1 | YBR052C | Protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SCH9 | YHR205W | AGC family protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSK22 | YCR073C | MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | FMP45 | YDL222C | Integral membrane protein localized to mitochondria | physical | 1 | 1 | 1 | PCA | 
            
                | SLG1 | YOR008C | Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | MUP1 | YGR055W | High affinity methionine permease | physical | 1 | 1 | 1 | PCA | 
            
                | TCB3 | YML072C | Cortical ER protein involved in ER-plasma membrane tethering | physical | 1 | 1 | 1 | PCA | 
            
                | TCB3 | YML072C | Cortical ER protein involved in ER-plasma membrane tethering | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | WSC2 | YNL283C | Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway | physical | 1 | 1 | 1 | PCA | 
            
                | WSC2 | YNL283C | Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | PHS1 | YJL097W | Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FMC1 | YIL098C | Mitochondrial matrix protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | UFO1 | YML088W | F-box receptor protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SMM1 | YNR015W | Dihydrouridine synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ZRT1 | YGL255W | High-affinity zinc transporter of the plasma membrane | genetic | 1 | 1 | 1 | Negative Genetic |