| FKH1 | YIL131C | Forkhead family transcription factor | regulation | 5 | 3 | 5 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence, chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence, ChEC-Seq experiments | 
            
                | IRA2 | YOL081W | GTPase-activating protein | genetic | 5 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | AIM22 | YJL046W | Lipoate-protein ligase | genetic | 4 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | LIP2 | YLR239C | Lipoyl ligase | genetic | 4 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | DOA1 | YKL213C | WD-repeat protein involved in ubiquitin-mediated protein degradation | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ARO8 | YGL202W | Aromatic aminotransferase I | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | CYT1 | YOR065W | Cytochrome c1 | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SET6 | YPL165C | SET domain protein of unknown function | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | MCT1 | YOR221C | Predicted malonyl-CoA:ACP transferase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PET8 | YNL003C | S-adenosylmethionine transporter of the mitochondrial inner membrane | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 2 | 2 | 2 | chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments | 
            
                | CDC13 | YDL220C | Single stranded DNA-binding protein found at TG1-3 telomere G-tails | genetic | 2 | 2 | 2 | Synthetic Rescue, Positive Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | ATG8 | YBL078C | Ub-like protein | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | LIP5 | YOR196C | Protein involved in biosynthesis of the coenzyme lipoic acid | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | CBT1 | YKL208W | Protein involved in 5' RNA end processing | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | YME1 | YPR024W | Catalytic subunit of i-AAA protease complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | PDA1 | YER178W | E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | SKI2 | YLR398C | Ski complex component and putative RNA helicase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | SWI4 | YER111C | DNA binding component of the SBF complex (Swi4p-Swi6p) | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | HSF1 | YGL073W | Trimeric heat shock transcription factor | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | GCN4 | YEL009C | bZIP transcriptional activator of amino acid biosynthetic genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | UME6 | YDR207C | Rpd3L histone deacetylase complex subunit | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | GLC7 | YER133W | Type 1 S/T protein phosphatase (PP1) catalytic subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BMH1 | YER177W | 14-3-3 protein, major isoform | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC48 | YDL126C | AAA ATPase with protein-unfoldase activity | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC3 | YLR314C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HDA1 | YNL021W | Catalytic subunit of class II HDA1 histone deacetylase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | INO80 | YGL150C | Nucleosome spacing factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LAT1 | YNL071W | Dihydrolipoamide acetyltransferase component (E2) of the PDC | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LPD1 | YFL018C | Dihydrolipoamide dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL12 | YBL035C | B subunit of DNA polymerase alpha-primase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAD23 | YEL037C | Protein with ubiquitin-like N terminus | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPD3 | YNL330C | Histone deacetylase, component of both the Rpd3S and Rpd3L complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC63 | YOR254C | Essential subunit of Sec63 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRP54 | YPR088C | Signal recognition particle (SRP) subunit (homolog of mammalian SRP54) | physical | 1 | 1 | 1 | Co-purification | 
            
                | VRP1 | YLR337C | Verprolin, proline-rich actin-associated protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | POR1 | YNL055C | Mitochondrial porin (voltage-dependent anion channel) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | QCR2 | YPR191W | Subunit 2 of ubiquinol cytochrome-c reductase (Complex III) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MLH3 | YPL164C | Protein involved in DNA mismatch repair and meiotic recombination | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | FAR10 | YLR238W | Protein involved in recovery from arrest in response to pheromone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRM2 | YIL037C | Pheromone-regulated protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MFB1 | YDR219C | Mitochondria-associated F-box protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BIR1 | YJR089W | Subunit of chromosomal passenger complex (CPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DCK1 | YLR422W | Dock family protein (Dedicator Of CytoKinesis), homolog of human DOCK1 | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ARP1 | YHR129C | Actin-related protein of the dynactin complex | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | ACF4 | YJR083C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UBC9 | YDL064W | SUMO-conjugating enzyme involved in the Smt3p conjugation pathway | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RTG3 | YBL103C | bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAM18 | YLR008C | Subunit of the import motor (PAM complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MPT5 | YGL178W | mRNA-binding protein of the PUF family | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | POL3 | YDL102W | Catalytic subunit of DNA polymerase delta | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | INN1 | YNL152W | Essential protein that associates with contractile actomyosin ring | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP24 | YMR268C | Splicing factor that reanneals snRNPs during spliceosome recycling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YDJ1 | YNL064C | Type I HSP40 co-chaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UME6 | YDR207C | Rpd3L histone deacetylase complex subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YCR102C | YCR102C | Putative quinone oxidoreductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GIS2 | YNL255C | Translational activator for mRNAs with internal ribosome entry sites | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | AIM23 | YJL131C | Mitochondrial translation initiation factor 3 (IF3, mIF3) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NCR1 | YPL006W | Vacuolar membrane protein involved with Npc2p in sterol trafficking | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAD57 | YDR004W | Protein that stimulates strand exchange | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC50 | YCR094W | Endosomal protein that interacts with phospholipid flippase Drs2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RRT2 | YBR246W | Methylesterase performing penultimate step of diphthamide biosynthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COS1 | YNL336W | Endosomal protein involved in turnover of plasma membrane proteins | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CEM1 | YER061C | Mitochondrial beta-keto-acyl synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MLO127 | YJR039W | Mitochondrial protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VTS1 | YOR359W | Flap-structured DNA-binding and RNA-binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TPH3 | YJL016W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COX20 | YDR231C | Mitochondrial inner membrane protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | KHA1 | YJL094C | Putative K+/H+ antiporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IFM1 | YOL023W | Mitochondrial translation initiation factor 2 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DPL1 | YDR294C | Dihydrosphingosine phosphate lyase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ODC1 | YPL134C | Mitochondrial inner membrane transporter | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | TSC11 | YER093C | Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RCF1 | YML030W | Cytochrome c oxidase subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ODC2 | YOR222W | Mitochondrial inner membrane transporter | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | LEU5 | YHR002W | Mitochondrial carrier protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRE5 | YOR336W | Protein required for beta-1,6 glucan biosynthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPL039W | YPL039W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPS4 | YOR313C | Protein whose expression is induced during sporulation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YDL180W | YDL180W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YDL157C | YDL157C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YER187W | YER187W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YLR012C | YLR012C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YHR022C-A | YHR022C-A | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic |