| DBF2 | YGR092W | Ser/Thr kinase involved in transcription and stress response | physical | 2 | 1 | 2 | Biochemical Activity, Biochemical Activity | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | AVT1 | YJR001W | Vacuolar transporter | genetic | 2 | 2 | 1 | Phenotypic Enhancement, Phenotypic Suppression | 
            
                | AVT3 | YKL146W | Vacuolar transporter | genetic | 2 | 2 | 1 | Phenotypic Enhancement, Phenotypic Suppression | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | MED2 | YDL005C | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | XBP1 | YIL101C | Transcriptional repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | STB1 | YNL309W | Protein with role in regulation of MBF-specific transcription at Start | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | TFC6 | YDR362C | Subunit of RNA polymerase III transcription initiation factor complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SIT4 | YDL047W | Ceramide-activated, type 2A-related serine-threonine phosphatase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PTK2 | YJR059W | Serine/threonine protein kinase | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | STE20 | YHL007C | Cdc42p-activated signal transducing kinase | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | TPK1 | YJL164C | cAMP-dependent protein kinase catalytic subunit | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | YCK2 | YNL154C | Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | HEK2 | YBL032W | RNA binding protein involved in asymmetric localization of ASH1 mRNA | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SND3 | YBR106W | Involved in SRP-independent protein targeting to the ER | physical | 1 | 1 | 1 | PCA | 
            
                | IFA38 | YBR159W | Microsomal beta-keto-reductase | physical | 1 | 1 | 1 | PCA | 
            
                | YPC1 | YBR183W | Alkaline ceramidase | physical | 1 | 1 | 1 | PCA | 
            
                | ELO2 | YCR034W | Fatty acid elongase, involved in sphingolipid biosynthesis | physical | 1 | 1 | 1 | PCA | 
            
                | TSC13 | YDL015C | Enoyl reductase | physical | 1 | 1 | 1 | PCA | 
            
                | SHR3 | YDL212W | Endoplasmic reticulum packaging chaperone | physical | 1 | 1 | 1 | PCA | 
            
                | STE14 | YDR410C | Farnesyl cysteine-carboxyl methyltransferase | physical | 1 | 1 | 1 | PCA | 
            
                | CHO1 | YER026C | Phosphatidylserine synthase | physical | 1 | 1 | 1 | PCA | 
            
                | SHO1 | YER118C | Transmembrane osmosensor for filamentous growth and HOG pathways | physical | 1 | 1 | 1 | PCA | 
            
                | MST27 | YGL051W | Putative integral membrane protein, involved in vesicle formation | physical | 1 | 1 | 1 | PCA | 
            
                | ERG25 | YGR060W | C-4 methyl sterol oxidase | physical | 1 | 1 | 1 | PCA | 
            
                | ERV29 | YGR284C | Protein localized to COPII-coated vesicles | physical | 1 | 1 | 1 | PCA | 
            
                | LAG1 | YHL003C | Ceramide synthase component | physical | 1 | 1 | 1 | PCA | 
            
                | ERG11 | YHR007C | Lanosterol 14-alpha-demethylase | physical | 1 | 1 | 1 | PCA | 
            
                | YHR140W | YHR140W | Endoplasmic reticulum protein | physical | 1 | 1 | 1 | PCA | 
            
                | SNL1 | YIL016W | Ribosome-associated protein | physical | 1 | 1 | 1 | PCA | 
            
                | PHO86 | YJL117W | Endoplasmic reticulum (ER) resident protein | physical | 1 | 1 | 1 | PCA | 
            
                | ELO1 | YJL196C | Elongase I, medium-chain acyl elongase | physical | 1 | 1 | 1 | PCA | 
            
                | STE24 | YJR117W | Highly conserved zinc metalloprotease | physical | 1 | 1 | 1 | PCA | 
            
                | YET1 | YKL065C | Endoplasmic reticulum transmembrane protein | physical | 1 | 1 | 1 | PCA | 
            
                | SRP102 | YKL154W | Signal recognition particle (SRP) receptor beta subunit | physical | 1 | 1 | 1 | PCA | 
            
                | ELO3 | YLR372W | Elongase | physical | 1 | 1 | 1 | PCA | 
            
                | GSF2 | YML048W | Endoplasmic reticulum (ER) localized integral membrane protein | physical | 1 | 1 | 1 | PCA | 
            
                | SEC63 | YOR254C | Essential subunit of Sec63 complex | physical | 1 | 1 | 1 | PCA | 
            
                | GPI2 | YPL076W | Protein involved in the synthesis of GlcNAc-PI | physical | 1 | 1 | 1 | PCA | 
            
                | YOP1 | YPR028W | Reticulon-interacting protein | physical | 1 | 1 | 1 | PCA | 
            
                | PAT1 | YCR077C | Deadenylation-dependent mRNA-decapping factor | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | VAM6 | YDL077C | Guanine nucleotide exchange factor for the GTPase Gtr1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | VSB1 | YGR125W | Vacuolar membrane protein required for uptake and storage of arginine | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPM3 | YOL056W | Nonfunctional homolog of Gpm1p phosphoglycerate mutase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PSA1 | YDL055C | GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | QCR10 | YHR001W-A | Subunit of the ubiqunol-cytochrome c oxidoreductase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GIN4 | YDR507C | Protein kinase involved in bud growth and assembly of the septin ring | genetic | 1 | 1 | 1 | Dosage Growth Defect | 
            
                | HOG1 | YLR113W | Mitogen-activated protein kinase involved in osmoregulation | genetic | 1 | 1 | 1 | Dosage Growth Defect | 
            
                | AVT7 | YIL088C | Vacuolar amino acid transporter | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | GPI11 | YDR302W | ER membrane protein involved in a late step of GPI anchor assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UFE1 | YOR075W | t-SNARE protein required for retrograde vesicular traffic | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMD1 | YGR074W | Core Sm protein Sm D1 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRPL27 | YBR282W | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LRE1 | YCL051W | Protein involved in control of cell wall structure and stress response | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP6 | YDL213C | rRNA-binding protein required for 40S ribosomal subunit biogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YGR210C | YGR210C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RCH1 | YMR034C | Negative regulator of cytosolic calcium homeostasis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TUB4 | YLR212C | Gamma-tubulin | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | AQY1 | YPR192W | Spore-specific water channel | physical | 1 | 1 | 1 | PCA |