| BEM3 | YPL115C | Rho GTPase activating protein (RhoGAP) | physical | 7 | 4 | 3 | PCA, Reconstituted Complex, Two-hybrid, PCA, Reconstituted Complex, Co-crystal Structure, Reconstituted Complex | 
            
                | SCS2 | YER120W | Integral ER membrane protein, regulates phospholipid metabolism | physical | 7 | 4 | 3 | PCA, Reconstituted Complex, PCA, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Protein-peptide | 
            
                | PEA2 | YER149C | Coiled-coil 12S polarisome subunit | physical | 7 | 3 | 3 | Two-hybrid, Two-hybrid, Two-hybrid, PCA, PCA, Reconstituted Complex, Reconstituted Complex | 
            
                | SPA2 | YLL021W | Component of the polarisome | physical | 4 | 2 | 2 | PCA, Reconstituted Complex, Reconstituted Complex, PCA | 
            
                | BOI2 | YER114C | Protein involved in polar growth | physical | 3 | 2 | 3 | Two-hybrid, PCA, Two-hybrid | 
            
                | CRM1 | YGR218W | Nuclear export factor, exportin | physical | 3 | 2 | 3 | Two-hybrid, Two-hybrid, Affinity Capture-MS | 
            
                | BOI1 | YBL085W | Protein involved in polar growth, functionally redundant with Boi2p | physical | 3 | 2 | 3 | Two-hybrid, PCA, PCA | 
            
                | KEL1 | YHR158C | Protein required for proper cell fusion and cell morphology | physical | 3 | 3 | 2 | Affinity Capture-MS, PCA, Reconstituted Complex | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | AIM44 | YPL158C | Regulator of Cdc42p and Rho1p | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SMI1 | YGR229C | Protein involved in the regulation of cell wall synthesis | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 2 | 2 | 2 | Two-hybrid, Affinity Capture-RNA | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | genetic | 2 | 2 | 2 | Negative Genetic, Dosage Lethality | 
            
                | TUS1 | YLR425W | Guanine nucleotide exchange factor (GEF) that modulates Rho1p activity | genetic | 2 | 2 | 2 | Synthetic Lethality, Negative Genetic | 
            
                | EMG1 | YLR186W | Methyltransferase for rRNA | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | BUD6 | YLR319C | Actin- and formin-interacting protein | physical | 2 | 1 | 2 | PCA, PCA | 
            
                | YLR031W | YLR031W | Putative protein of unknown function | physical | 2 | 1 | 2 | Two-hybrid, Two-hybrid | 
            
                | ILM1 | YJR118C | Protein of unknown function | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | FKS1 | YLR342W | Catalytic subunit of 1,3-beta-D-glucan synthase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | RPS29A | YLR388W | Protein component of the small (40S) ribosomal subunit | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SHS1 | YDL225W | Component of the septin ring that is required for cytokinesis | physical | 2 | 2 | 1 | PCA, Reconstituted Complex | 
            
                | SEC12 | YNR026C | Guanine nucleotide exchange factor (GEF) | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | PKC1 | YBL105C | Protein serine/threonine kinase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | SWI5 | YDR146C | Transcription factor that recruits Mediator and Swi/Snf complexes | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | ROM2 | YLR371W | Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | RGL1 | YPL066W | Regulator of Rho1p signaling, cofactor of Tus1p | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | XBP1 | YIL101C | Transcriptional repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | regulation | 1 | 1 | 1 | quantitative mass spectrometry evidence | 
            
                | DED81 | YHR019C | Cytosolic asparaginyl-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BRX1 | YOL077C | Nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CFT2 | YLR115W | Subunit of the mRNA cleavage and polyadenlylation factor (CPF) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARC15 | YIL062C | Subunit of the ARP2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARC35 | YNR035C | Subunit of the ARP2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC24 | YAL041W | Guanine nucleotide exchange factor (GEF) for Cdc42p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ECM1 | YAL059W | Pre-ribosomal factor involved in 60S ribosomal protein subunit export | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CRM1 | YGR218W | Nuclear export factor, exportin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DIB1 | YPR082C | 17-kDa component of the U4/U6aU5 tri-snRNP | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC6 | YJL194W | Essential ATP-binding protein required for DNA replication | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC25 | YLR310C | Membrane bound guanine nucleotide exchange factor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BCK1 | YJL095W | MAPKKK acting in the protein kinase C signaling pathway | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAF20 | YOR276W | Phosphoprotein of the mRNA cap-binding complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ATG17 | YLR423C | Scaffold protein responsible for phagophore assembly site organization | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | BFA1 | YJR053W | Subunit of a two-component GTPase-activating protein, Bfa1p-Bub2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CIN8 | YEL061C | Bipolar kinesin motor protein | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | ARE1 | YCR048W | Acyl-CoA:sterol acyltransferase | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | CLB2 | YPR119W | B-type cyclin involved in cell cycle progression | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | AIM18 | YHR198C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ADY3 | YDL239C | Protein required for spore wall formation | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | ELO3 | YLR372W | Elongase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMC3 | YJL074C | Subunit of the multiprotein cohesin complex | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | NTC20 | YBR188C | Member of the NineTeen Complex (NTC) | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | SEC24 | YIL109C | Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | HEK2 | YBL032W | RNA binding protein involved in asymmetric localization of ASH1 mRNA | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | KIN1 | YDR122W | S/T protein kinase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | KIN2 | YLR096W | S/T protein kinase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SPC72 | YAL047C | Gamma-tubulin small complex (gamma-TuSC) receptor | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | SEC9 | YGR009C | t-SNARE protein required for secretory vesicle-plasma membrane fusion | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | SGM1 | YJR134C | Protein of unknown function | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification | 
            
                | VAM6 | YDL077C | Guanine nucleotide exchange factor for the GTPase Gtr1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MMS22 | YLR320W | Subunit of E3 ubiquitin ligase complex involved in replication repair | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GSC2 | YGR032W | Catalytic subunit of 1,3-beta-glucan synthase | physical | 1 | 1 | 1 | PCA | 
            
                | EPO1 | YMR124W | Protein involved in septin-ER tethering | physical | 1 | 1 | 1 | PCA | 
            
                | KEL2 | YGR238C | Protein that negatively regulates mitotic exit | physical | 1 | 1 | 1 | PCA | 
            
                | SEC4 | YFL005W | Rab family GTPase | physical | 1 | 1 | 1 | PCA | 
            
                | SKT5 | YBL061C | Activator of Chs3p (chitin synthase III) during vegetative growth | physical | 1 | 1 | 1 | PCA | 
            
                | TOM1 | YDR457W | E3 ubiquitin ligase of the hect-domain class | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | UBP15 | YMR304W | Ubiquitin-specific protease involved in protein deubiquitination | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GRE3 | YHR104W | Aldose reductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KES1 | YPL145C | Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NPL3 | YDR432W | RNA-binding protein | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | NBP2 | YDR162C | Protein involved in the HOG (high osmolarity glycerol) pathway | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | PTC1 | YDL006W | Type 2C protein phosphatase (PP2C) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | HYP2 | YEL034W | Translation elongation factor eIF-5A | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | KRR1 | YCL059C | Nucleolar protein required for rRNA synthesis and ribosomal assembly | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | TSC13 | YDL015C | Enoyl reductase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | USO1 | YDL058W | Essential protein involved in vesicle-mediated ER to Golgi transport | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPN5 | YDL147W | Subunit of the CSN and 26S proteasome lid complexes | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC7 | YDR170C | Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MOB2 | YFL034C-B | Activator of Cbk1p kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PRP43 | YGL120C | RNA helicase in the DEAH-box family | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YHR020W | YHR020W | Prolyl-tRNA synthetase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PSF2 | YJL072C | Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RAM2 | YKL019W | Alpha subunit of farnesyltransferase and geranylgeranyltransferase-I | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | URA6 | YKL024C | Uridylate kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SRV2 | YNL138W | CAP (cyclase-associated protein) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SMP3 | YOR149C | Alpha 1,2-mannosyltransferase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC8 | YPR055W | Essential 121 kDa subunit of the exocyst complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | OST4 | YDL232W | Subunit of the oligosaccharyltransferase complex of the ER lumen | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPS27B | YHR021C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PBR1 | YNL181W | Putative oxidoreductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL3 | YDL102W | Catalytic subunit of DNA polymerase delta | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FAL1 | YDR021W | Nucleolar protein required for maturation of 18S rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSS1 | YDR086C | Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI11 | YDR302W | ER membrane protein involved in a late step of GPI anchor assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TSC11 | YER093C | Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAD1 | YFR005C | Conserved zinc-finger domain protein involved in pre-mRNA splicing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YIP1 | YGR172C | Integral membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MES1 | YGR264C | Methionyl-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG11 | YHR007C | Lanosterol 14-alpha-demethylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAN1 | YIR006C | Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSC1 | YJR045C | Hsp70 family ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RSC4 | YKR008W | Component of the RSC chromatin remodeling complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC22 | YLR268W | R-SNARE protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL1 | YNL102W | Catalytic subunit of the DNA polymerase I alpha-primase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TIM23 | YNR017W | Essential component of the TIM23 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MGE1 | YOR232W | Mitochondrial matrix cochaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MEX67 | YPL169C | Poly(A)RNA binding protein involved in nuclear mRNA export | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSD1 | YDR293C | Translational repressor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAL1 | YDR348C | Protein of unknown function thought to be involved in endocytosis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YAR029W | YAR029W | Member of DUP240 gene family but contains no transmembrane domains | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SHG1 | YBR258C | Subunit of the COMPASS (Set1C) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS41 | YDR080W | Subunit of the HOPS endocytic tethering complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ULI1 | YFR026C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAD54 | YGL163C | DNA-dependent ATPase that stimulates strand exchange | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HUR1 | YGL168W | Protein with a role in DNA repair | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VAM7 | YGL212W | Vacuolar SNARE protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VMA21 | YGR105W | Integral membrane protein required for V-ATPase function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAL12 | YGR292W | Maltase (alpha-D-glucosidase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLT2 | YHR030C | Serine/threonine MAP kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | INM1 | YHR046C | Inositol monophosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YJR011C | YJR011C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YJR120W | YJR120W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IXR1 | YKL032C | Transcriptional repressor that regulates hypoxic genes during normoxia | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PGM1 | YKL127W | Phosphoglucomutase, minor isoform | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAC1 | YKL212W | Phosphatidylinositol phosphate phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SIC1 | YLR079W | Cyclin-dependent kinase inhibitor (CKI) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PET8 | YNL003C | S-adenosylmethionine transporter of the mitochondrial inner membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SIN3 | YOL004W | Component of both the Rpd3S and Rpd3L histone deacetylase complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS17 | YOR132W | Subunit of the membrane-associated retromer complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PDE2 | YOR360C | High-affinity cyclic AMP phosphodiesterase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLA2 | YNL243W | Adaptor protein that links actin to clathrin and endocytosis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YPC1 | YBR183W | Alkaline ceramidase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | AIM26 | YKL037W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | APJ1 | YNL077W | Hsp40 chaperone with a role in SUMO-mediated protein degradation | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | AIM11 | YER093C-A | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ALG14 | YBR070C | Component of UDP-GlcNAc transferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COX20 | YDR231C | Mitochondrial inner membrane protein | physical | 1 | 1 | 1 | Affinity Capture-MS |