| NHA1 | YLR138W | Na+/H+ antiporter | genetic | 6 | 2 | 6 | Phenotypic Enhancement, Phenotypic Enhancement, Synthetic Growth Defect, Synthetic Growth Defect, Synthetic Growth Defect, Phenotypic Enhancement | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 2 | 2 | 2 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence | 
            
                | ARL1 | YBR164C | Soluble GTPase with a role in regulation of membrane traffic | genetic | 2 | 2 | 2 | Synthetic Rescue, Synthetic Growth Defect | 
            
                | PPZ1 | YML016C | Serine/threonine protein phosphatase Z, isoform of Ppz2p | genetic | 2 | 2 | 2 | Synthetic Growth Defect, Dosage Rescue | 
            
                | PPZ2 | YDR436W | Serine/threonine protein phosphatase Z, isoform of Ppz1p | genetic | 2 | 2 | 2 | Synthetic Growth Defect, Dosage Rescue | 
            
                | SNF1 | YDR477W | AMP-activated S/T protein kinase | genetic | 2 | 2 | 2 | Synthetic Rescue, Dosage Rescue | 
            
                | KHA1 | YJL094C | Putative K+/H+ antiporter | genetic | 2 | 1 | 2 | Synthetic Growth Defect, Synthetic Growth Defect | 
            
                | NHX1 | YDR456W | Na+/H+ and K+/H+ exchanger | genetic | 2 | 1 | 2 | Synthetic Growth Defect, Synthetic Growth Defect | 
            
                | TOK1 | YJL093C | Outward-rectifier potassium channel of the plasma membrane | genetic | 2 | 1 | 2 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | PMP3 | YDR276C | Small plasma membrane protein | genetic | 2 | 1 | 2 | Synthetic Growth Defect, Synthetic Growth Defect | 
            
                | IMP21 | YIL154C | Transcriptional activator involved in maintenance of ion homeostasis | genetic | 2 | 2 | 1 | Dosage Rescue, Phenotypic Enhancement | 
            
                | SAT4 | YCR008W | Ser/Thr protein kinase involved in salt tolerance, nutrient response | genetic | 2 | 2 | 1 | Dosage Rescue, Phenotypic Enhancement | 
            
                | HAL5 | YJL165C | Snf1p-related nutrient-responsive protein kinase | genetic | 2 | 2 | 1 | Dosage Rescue, Phenotypic Enhancement | 
            
                | PHO84 | YML123C | High-affinity inorganic phosphate (Pi) transporter | genetic | 2 | 2 | 1 | Synthetic Growth Defect, Phenotypic Enhancement | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation- exonuclease evidence | 
            
                | RFX1 | YLR176C | Major transcriptional repressor of DNA-damage-regulated genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MET32 | YDR253C | Zinc-finger DNA-binding transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MET4 | YNL103W | Leucine-zipper transcriptional activator | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RAP1 | YNL216W | Essential DNA-binding transcription regulator that binds many loci | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MIG1 | YGL035C | Transcription factor involved in glucose repression | regulation | 1 | 1 | 1 | beta-galactosidase reporter gene assay evidence | 
            
                | MIG2 | YGL209W | Zinc finger transcriptional repressor | regulation | 1 | 1 | 1 | beta-galactosidase reporter gene assay evidence | 
            
                | CYC8 | YBR112C | General transcriptional co-repressor | regulation | 1 | 1 | 1 | beta-galactosidase reporter gene assay evidence | 
            
                | SPT6 | YGR116W | Nucleosome remodeling protein | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | TUP1 | YCR084C | General repressor of transcription in complex with Cyc8p | regulation | 1 | 1 | 1 | beta-galactosidase reporter gene assay evidence | 
            
                | SKO1 | YNL167C | Basic leucine zipper transcription factor of the ATF/CREB family | regulation | 1 | 1 | 1 | beta-galactosidase reporter gene assay evidence | 
            
                | USV1 | YPL230W | Putative transcription factor containing a C2H2 zinc finger | regulation | 1 | 1 | 1 | northern blot evidence | 
            
                | CKB1 | YGL019W | Beta regulatory subunit of casein kinase 2 (CK2) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | BMH1 | YER177W | 14-3-3 protein, major isoform | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | CBC2 | YPL178W | Small subunit of the heterodimeric cap binding complex with Sto1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARP7 | YPR034W | Component of both the SWI/SNF and RSC chromatin remodeling complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARP9 | YMR033W | Component of both the SWI/SNF and RSC chromatin remodeling complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BDF1 | YLR399C | BET family transcriptional regulator | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | BET2 | YPR176C | Beta subunit of Type II geranylgeranyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC24 | YAL041W | Guanine nucleotide exchange factor (GEF) for Cdc42p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EMG1 | YLR186W | Methyltransferase for rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | COG3 | YER157W | Essential component of the conserved oligomeric Golgi complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BRR1 | YPR057W | snRNP protein component of spliceosomal snRNPs | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCT6 | YDR188W | Subunit of the cytosolic chaperonin Cct ring complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ELM1 | YKL048C | Serine/threonine protein kinase | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | ABF1 | YKL112W | DNA binding protein with possible chromatin-reorganizing activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CHS5 | YLR330W | Component of the exomer complex | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | BRL1 | YHR036W | Essential nuclear envelope/ER integral membrane protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CAB4 | YGR277C | Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAJ1 | YER048C | Nuclear type II J heat shock protein of the E. coli dnaJ family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TOR1 | YJR066W | PIK-related protein kinase and rapamycin target | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | TOR2 | YKL203C | PIK-related protein kinase and rapamycin target | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | WHI3 | YNL197C | RNA binding protein that modulates mRNA stability | physical | 1 | 1 | 1 | Protein-RNA | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SHO1 | YER118C | Transmembrane osmosensor for filamentous growth and HOG pathways | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | MYG1 | YER156C | Protein involved in mitochondrial function | physical | 1 | 1 | 1 | Proximity Label-MS | 
            
                | MDH1 | YKL085W | Mitochondrial malate dehydrogenase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SCS3 | YGL126W | Protein required for normal ER membrane biosynthesis in response to ER | physical | 1 | 1 | 1 | PCA | 
            
                | PSR1 | YLL010C | Plasma membrane-associated protein phosphatase | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | PSR2 | YLR019W | Putative plasma membrane phosphatase | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | HAL1 | YPR005C | Cytoplasmic protein involved in halotolerance | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | RAD9 | YDR217C | DNA damage-dependent checkpoint protein | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | SEN1 | YLR430W | ATP-dependent 5' to 3' RNA/DNA and DNA helicase | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | SIS2 | YKR072C | Negative regulatory subunit of protein phosphatase 1 (Ppz1p) | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | GIS4 | YML006C | CAAX box containing protein of unknown function | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | TPS1 | YBR126C | Synthase subunit of trehalose-6-P synthase/phosphatase complex | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | VCX1 | YDL128W | Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | SNF8 | YPL002C | Component of the ESCRT-II complex | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | VPS20 | YMR077C | Myristoylated subunit of the ESCRT-III complex | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | SNF7 | YLR025W | One of four subunits of the ESCRT-III complex | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | YPI1 | YFR003C | Regulatory subunit of the type I protein phosphatase (PP1) Glc7p | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | VHC1 | YBR235W | Vacuolar membrane cation-chloride cotransporter (CCC) | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | VNX1 | YNL321W | Calcium/H+ antiporter localized to the endoplasmic reticulum membrane | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | EXO84 | YBR102C | Exocyst subunit with dual roles in exocytosis and spliceosome assembly | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPT3 | YDR394W | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | NUP145 | YGL092W | Essential protein with distinct roles in two nuclear pore subcomplexes | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC6 | YIL068C | Essential 88kDa subunit of the exocyst complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | KAP95 | YLR347C | Karyopherin beta | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC39 | YLR440C | Component of the Dsl1p tethering complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | TEM1 | YML064C | GTPase involved in initiation of Mitotic Exit Network (MEN) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | KRE33 | YNL132W | Acetyltransferase required for biogenesis of small ribosomal subunit | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPO31 | YOR116C | RNA polymerase III largest subunit C160 | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MGE1 | YOR232W | Mitochondrial matrix cochaperone | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MOT1 | YPL082C | Essential protein involved in regulation of transcription | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SUA7 | YPR086W | Transcription factor TFIIB | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ERD2 | YBL040C | HDEL receptor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MED8 | YBR193C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GLE1 | YDL207W | Cytoplasmic nucleoporin required for polyadenylated mRNA export | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRE4 | YFR050C | Beta 7 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RFC2 | YJR068W | Subunit of heteropentameric Replication factor C (RF-C) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MIF2 | YKL089W | Centromeric CDEIII region binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NTR2 | YKR022C | Essential protein that forms a dimer with Ntr1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP19 | YLL036C | Splicing factor associated with the spliceosome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSL1 | YLR005W | Subunit of the core form of RNA polymerase transcription factor TFIIH | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC61 | YLR378C | Conserved ER protein translocation channel | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ORC1 | YML065W | Largest subunit of the origin recognition complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MYO2 | YOR326W | Type V myosin motor involved in actin-based transport of cargos | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRP54 | YPR088C | Signal recognition particle (SRP) subunit (homolog of mammalian SRP54) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ZNF1 | YFL052W | Zinc cluster transcription factor that regulates respiratory growth | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRT4 | YKL009W | Protein involved in mRNA turnover and ribosome assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GID11 | YLR149C | Substrate receptor of the glucose-induced degradation-deficient (GID) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | INO4 | YOL108C | Transcription factor involved in phospholipid synthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KTR1 | YOR099W | Alpha-1,2-mannosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC1 | YDR182W | Putative mannose-ethanolamine phosphate phosphodiesterase | genetic | 1 | 1 | 1 | Negative Genetic |