| SSA1 | YAL005C | ATPase involved in protein folding and NLS-directed nuclear transport | physical | 4 | 2 | 4 | Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS | 
            
                | CPR6 | YLR216C | Peptidyl-prolyl cis-trans isomerase (cyclophilin) | physical | 4 | 2 | 3 | Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 3 | 2 | 3 | Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA | 
            
                | HSP82 | YPL240C | Hsp90 chaperone | physical | 3 | 1 | 3 | Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS | 
            
                | HTD2 | YHR067W | Mitochondrial 3-hydroxyacyl-thioester dehydratase | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | CEM1 | YER061C | Mitochondrial beta-keto-acyl synthase | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ARV1 | YLR242C | Cortical ER protein | genetic | 3 | 2 | 2 | Positive Genetic, Synthetic Rescue, Synthetic Rescue | 
            
                | ERG11 | YHR007C | Lanosterol 14-alpha-demethylase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ASC1 | YMR116C | G-protein beta subunit and guanine dissociation inhibitor for Gpa2p | physical | 2 | 2 | 2 | Proximity Label-MS, Affinity Capture-MS | 
            
                | HSC82 | YMR186W | Cytoplasmic chaperone of the Hsp90 family | physical | 2 | 2 | 2 | Affinity Capture-Western, Affinity Capture-MS | 
            
                | PMP1 | YCR024C-A | Regulatory subunit for the plasma membrane H(+)-ATPase Pma1p | physical | 2 | 2 | 2 | Affinity Capture-MS, Affinity Capture-RNA | 
            
                | RVB1 | YDR190C | ATP-dependent DNA helicase, also known as pontin | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | RVB2 | YPL235W | ATP-dependent DNA helicase, also known as reptin | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | KGD2 | YDR148C | Dihydrolipoyl transsuccinylase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | LAT1 | YNL071W | Dihydrolipoamide acetyltransferase component (E2) of the PDC | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | UBP15 | YMR304W | Ubiquitin-specific protease involved in protein deubiquitination | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | ETR1 | YBR026C | 2-enoyl thioester reductase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | LIP2 | YLR239C | Lipoyl ligase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | OAR1 | YKL055C | Mitochondrial 3-oxoacyl-[acyl-carrier-protein] reductase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SUP35 | YDR172W | Translation termination factor eRF3 | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | CDC12 | YHR107C | Component of the septin ring that is required for cytokinesis | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | PDA1 | YER178W | E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | HFA1 | YMR207C | Mitochondrial acetyl-coenzyme A carboxylase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | DFR1 | YOR236W | Dihydrofolate reductase involved in tetrahydrofolate biosynthesis | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | GCN4 | YEL009C | bZIP transcriptional activator of amino acid biosynthetic genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | UME6 | YDR207C | Rpd3L histone deacetylase complex subunit | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | DSN1 | YIR010W | Essential component of the outer kinetochore MIND complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPO21 | YDL140C | RNA polymerase II largest subunit B220 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GLC7 | YER133W | Type 1 S/T protein phosphatase (PP1) catalytic subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL16A | YIL133C | Ribosomal 60S subunit protein L16A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RLP7 | YNL002C | Nucleolar protein similar to large ribosomal subunit L7 proteins | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | KAP123 | YER110C | Karyopherin beta | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RIC1 | YLR039C | Protein involved in retrograde transport to the cis-Golgi network | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NUG1 | YER006W | GTPase that associates with nuclear 60S pre-ribosomes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MAK21 | YDR060W | Constituent of 66S pre-ribosomal particles | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPA135 | YPR010C | RNA polymerase I second largest subunit A135 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TFC1 | YBR123C | Subunit of RNA polymerase III transcription initiation factor complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPN1 | YHR027C | Non-ATPase base subunit of the 19S RP of the 26S proteasome | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPN10 | YHR200W | Proteasome polyubiquitin receptor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPN11 | YFR004W | Metalloprotease subunit of 19S regulatory particle | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | KAP95 | YLR347C | Karyopherin beta | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | IMD3 | YLR432W | Inosine monophosphate dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRE1 | YER012W | Beta 4 subunit of the 20S proteasome | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BCP1 | YDR361C | Essential nuclear chaperone for ribosomal protein Rpl23p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ECM16 | YMR128W | Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | KAP104 | YBR017C | Transportin or cytosolic karyopherin beta 2 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NAM7 | YMR080C | ATP-dependent RNA helicase of the SFI superfamily | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | SUP35 | YDR172W | Translation termination factor eRF3 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | APL2 | YKL135C | Beta-adaptin subunit of the clathrin-associated protein (AP-1) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | APL1 | YJR005W | Beta-adaptin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CYS4 | YGR155W | Cystathionine beta-synthase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ENO1 | YGR254W | Enolase I, a phosphopyruvate hydratase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | EMG1 | YLR186W | Methyltransferase for rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FIP1 | YJR093C | Subunit of cleavage polyadenylation factor (CPF) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HHF1 | YBR009C | Histone H4 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ECM29 | YHL030W | Scaffold protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | KRR1 | YCL059C | Nucleolar protein required for rRNA synthesis and ribosomal assembly | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CRM1 | YGR218W | Nuclear export factor, exportin | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MAK5 | YBR142W | Essential nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HSC82 | YMR186W | Cytoplasmic chaperone of the Hsp90 family | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | MRP4 | YHL004W | Mitochondrial ribosomal protein of the small subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | LYS12 | YIL094C | Homo-isocitrate dehydrogenase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NUP60 | YAR002W | FG-nucleoporin component of central core of the nuclear pore complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HSP42 | YDR171W | Small heat shock protein (sHSP) with chaperone activity | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | DOA4 | YDR069C | Ubiquitin hydrolase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | LPD1 | YFL018C | Dihydrolipoamide dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PDB1 | YBR221C | E1 beta subunit of the pyruvate dehydrogenase (PDH) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IDH2 | YOR136W | Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HSP82 | YPL240C | Hsp90 chaperone | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | PSE1 | YMR308C | Karyopherin/importin that interacts with the nuclear pore complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NAB3 | YPL190C | RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p) | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | NRD1 | YNL251C | RNA-binding subunit of Nrd1 complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PUB1 | YNL016W | Poly (A)+ RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HTA2 | YBL003C | Histone H2A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MVD1 | YNR043W | Mevalonate pyrophosphate decarboxylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MIR1 | YJR077C | Mitochondrial phosphate carrier | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CPA2 | YJR109C | Large subunit of carbamoyl phosphate synthetase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PTI1 | YGR156W | Essential component of CPF (cleavage and polyadenylation factor) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL23A | YBL087C | Ribosomal 60S subunit protein L23A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | REA1 | YLR106C | Huge dynein-related AAA-type ATPase (midasin) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SEC63 | YOR254C | Essential subunit of Sec63 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAM1 | YLR180W | S-adenosylmethionine synthetase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPT5 | YOR117W | ATPase of the 19S regulatory particle of the 26S proteasome | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SGF29 | YCL010C | Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SCP160 | YJL080C | Essential RNA-binding G protein effector of mating response pathway | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ROM2 | YLR371W | Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SBP1 | YHL034C | Protein that binds eIF4G and has a role in repression of translation | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | BCY1 | YIL033C | Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TIF1 | YKR059W | Translation initiation factor eIF4A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ECM30 | YLR436C | Protein of unknown function | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BRO1 | YPL084W | Cytoplasmic class E vacuolar protein sorting (VPS) factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLX9 | YGR081C | Protein required for pre-rRNA processing | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CAF20 | YOR276W | Phosphoprotein of the mRNA cap-binding complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | STI1 | YOR027W | Evolutionarily-conserved Hsp90 cochaperone | physical | 1 | 1 | 1 | PCA | 
            
                | GSP2 | YOR185C | GTP binding protein (mammalian Ranp homolog) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DPS1 | YLL018C | Aspartyl-tRNA synthetase, primarily cytoplasmic | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | FAA4 | YMR246W | Long chain fatty acyl-CoA synthetase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | POR1 | YNL055C | Mitochondrial porin (voltage-dependent anion channel) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ILV5 | YLR355C | Acetohydroxyacid reductoisomerase and mtDNA binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SEC53 | YFL045C | Phosphomannomutase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HSP104 | YLL026W | Disaggregase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MAE1 | YKL029C | Mitochondrial malic enzyme | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SMC6 | YLR383W | Subunit of the SMC5-SMC6 complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RSP5 | YER125W | NEDD4 family E3 ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RNA1 | YMR235C | GTPase activating protein (GAP) for Gsp1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HOG1 | YLR113W | Mitogen-activated protein kinase involved in osmoregulation | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | EMI2 | YDR516C | Hexokinase expressed during growth with low glucose levels | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TMA108 | YIL137C | Ribosome-associated, nascent chain binding factor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SIS1 | YNL007C | Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CSC1 | YLR241W | Calcium permeable gated cation channel | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ARA1 | YBR149W | NADP+ dependent arabinose dehydrogenase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CYS3 | YAL012W | Cystathionine gamma-lyase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ECM31 | YBR176W | Ketopantoate hydroxymethyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FIG1 | YBR040W | Integral membrane protein required for efficient mating | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | LPP1 | YDR503C | Lipid phosphate phosphatase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | AIM4 | YBR194W | Protein proposed to be associated with the nuclear pore complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BOS1 | YLR078C | v-SNARE (vesicle specific SNAP receptor) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RFT1 | YBL020W | Membrane protein required for translocation of Man5GlcNac2-PP-Dol | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS13 | YDR064W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BRE5 | YNR051C | Ubiquitin protease cofactor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SAC3 | YDR159W | mRNA export factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS1A | YLR441C | Ribosomal protein of the small (40S) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS8A | YBL072C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS17A | YML024W | Ribosomal protein 51 (rp51) of the small (40s) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS7A | YOR096W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS22A | YJL190C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CSE4 | YKL049C | Centromeric histone H3-like protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SEC22 | YLR268W | R-SNARE protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NMD2 | YHR077C | Protein involved in the nonsense-mediated mRNA decay (NMD) pathway | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | HFA1 | YMR207C | Mitochondrial acetyl-coenzyme A carboxylase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SPC42 | YKL042W | Central plaque component of spindle pole body (SPB) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STU2 | YLR045C | Microtubule polymerase of the XMAP215/Dis1 family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MCA1 | YOR197W | Ca2+-dependent cysteine protease | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL25 | YOL127W | Ribosomal 60S subunit protein L25 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL31A | YDL075W | Ribosomal 60S subunit protein L31A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TOM1 | YDR457W | E3 ubiquitin ligase of the hect-domain class | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS2 | YGL123W | Protein component of the small (40S) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS3 | YNL178W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification | 
            
                | RPS20 | YHL015W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL18A | YOL120C | Ribosomal 60S subunit protein L18A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MOG1 | YJR074W | Conserved nuclear protein that interacts with GTP-Gsp1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS14A | YCR031C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS0A | YGR214W | Ribosomal 40S subunit protein S0A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS18A | YDR450W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | FUR1 | YHR128W | Uracil phosphoribosyltransferase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ERG2 | YMR202W | C-8 sterol isomerase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATP14 | YLR295C | Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KCS1 | YDR017C | Inositol hexakisphosphate and inositol heptakisphosphate kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PUF4 | YGL014W | Member of the PUF protein family | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | UBP3 | YER151C | Ubiquitin-specific protease that cleaves Ub-protein fusions | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RIA1 | YNL163C | Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ALD2 | YMR170C | Cytoplasmic aldehyde dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GCV3 | YAL044C | H subunit of the mitochondrial glycine decarboxylase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COQ6 | YGR255C | Flavin-dependent monooxygenase involved in ubiquinone biosynthesis | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | FMS1 | YMR020W | Polyamine oxidase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | UBP10 | YNL186W | Ubiquitin-specific protease, deubiquitinates Ub-protein moieties | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TMA46 | YOR091W | Protein of unknown function that associates with translating ribosomes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MCY1 | YGR012W | Putative cysteine synthase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPS6A | YPL090C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | EGH1 | YIR007W | Steryl-beta-glucosidase with broad specificity for aglycones | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS9A | YPL081W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PSA1 | YDL055C | GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SDD3 | YOL098C | Putative metalloprotease | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SEH1 | YGL100W | Subunit of the Nup84 nuclear pore and SEACAT subcomplexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | VPS13 | YLL040C | Lipid transport protein involved in prospore membrane morphogenesis | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | URN1 | YPR152C | Protein of unknown function containing WW and FF domains | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | VPS33 | YLR396C | ATP-binding protein that is a subunit of the HOPS and CORVET complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YMD8 | YML038C | Putative nucleotide sugar transporter | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YDJ1 | YNL064C | Type I HSP40 co-chaperone | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | VID24 | YBR105C | GID Complex regulatory subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | VAM6 | YDL077C | Guanine nucleotide exchange factor for the GTPase Gtr1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | UTP10 | YJL109C | Nucleolar protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YKL183C-A | YKL183C-A | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RTR1 | YER139C | Dual specificity protein phosphatase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS10A | YOR293W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CSA1 | YPR174C | Protein of unknown function | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | UFD4 | YKL010C | Ubiquitin-protein ligase (E3) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ULP1 | YPL020C | Protease that specifically cleaves Smt3p protein conjugates | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL26A | YLR344W | Ribosomal 60S subunit protein L26A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS12 | YOR369C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS19A | YOL121C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | APJ1 | YNL077W | Hsp40 chaperone with a role in SUMO-mediated protein degradation | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | INP54 | YOL065C | Phosphatidylinositol 4,5-bisphosphate 5-phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PDX3 | YBR035C | Pyridoxine (pyridoxamine) phosphate oxidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | MIC26 | YGR235C | Component of the MICOS complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ERG24 | YNL280C | C-14 sterol reductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AAD4 | YDL243C | Putative aryl-alcohol dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS27A | YKL156W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CDC50 | YCR094W | Endosomal protein that interacts with phospholipid flippase Drs2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COQ2 | YNR041C | Para hydroxybenzoate polyprenyl transferase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MPS3 | YJL019W | Nuclear envelope protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | COQ4 | YDR204W | Protein with a role in ubiquinone (Coenzyme Q) biosynthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COX9 | YDL067C | Subunit VIIa of cytochrome c oxidase (Complex IV) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SAM50 | YNL026W | Component of the Sorting and Assembly Machinery (SAM) complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MET5 | YJR137C | Sulfite reductase beta subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RQC2 | YPL009C | Component of the Ribosome Quality Control (RQC) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IRC20 | YLR247C | E3 ubiquitin ligase and putative helicase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MCT1 | YOR221C | Predicted malonyl-CoA:ACP transferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PET8 | YNL003C | S-adenosylmethionine transporter of the mitochondrial inner membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ITR2 | YOL103W | Myo-inositol transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MMM1 | YLL006W | ER integral membrane protein, ERMES complex subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS15 | YOL040C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GPI11 | YDR302W | ER membrane protein involved in a late step of GPI anchor assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UPF3 | YGR072W | Component of the nonsense-mediated mRNA decay (NMD) pathway | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | PLB2 | YMR006C | Phospholipase B (lysophospholipase) involved in lipid metabolism | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPT2 | YPL148C | Phosphopantetheine:protein transferase (PPTase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ROF1 | YHR177W | Putative transcription factor containing a WOPR domain | genetic | 1 | 1 | 1 | Negative Genetic |