Standard name Systematic name Name description Description
RPB9 YGL070C RNA polymerase II subunit B12.6 RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site selection and fidelity of transcription
Visualize the interactome of RPB9
Links to external databases:
  SGD   |   KEGG   |  

Cell cycle phase and timing of transcription peak

Cell cycle phase Time (min)

CYCLoPs localization & abundance

WT1 WT2 WT3
Nucleolus 0.496 0.694 0.613
Nucleus 0.813 0.688 0.739

GFP localization & abundance

GFP localization GFP abundance
nucleus 2440

GO term count

Metabolism Cell cycle Cell division Signal transduction DNA replication
RPB9 6 0 0 0 0

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.
Standard name Systematic name Name description Type #Experiments #Methods #Publications Evidence
RPB3 YIL021W RNA polymerase II third largest subunit B44 physical 15 4 13 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex
RPO21 YDL140C RNA polymerase II largest subunit B220 physical 12 5 12 Affinity Capture-MS, Affinity Capture-Western, Co-crystal Structure, Two-hybrid, Co-crystal Structure, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS
RPB2 YOR151C RNA polymerase II second largest subunit B150 physical 7 4 7 Affinity Capture-MS, Affinity Capture-Western, Co-crystal Structure, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPB4 YJL140W RNA polymerase II subunit B32 physical 7 3 7 Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
RPB7 YDR404C RNA polymerase II subunit B16 physical 7 3 7 Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPB8 YOR224C RNA polymerase subunit ABC14.5 physical 6 3 6 Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
RPO26 YPR187W RNA polymerase subunit ABC23 physical 6 3 5 Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPB5 YBR154C RNA polymerase subunit ABC27 physical 5 3 5 Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS
RPB11 YOL005C RNA polymerase II subunit B12.5 physical 5 3 5 Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
DST1 YGL043W General transcription elongation factor TFIIS genetic 5 5 4 Dosage Rescue, Phenotypic Enhancement, Synthetic Lethality, Synthetic Growth Defect, Synthetic Rescue
RAD7 YJR052W Nucleotide excision repair (NER) protein genetic 5 3 4 Phenotypic Enhancement, Phenotypic Enhancement, Synthetic Lethality, Synthetic Growth Defect, Synthetic Lethality
RAD26 YJR035W Protein involved in transcription-coupled nucleotide excision repair genetic 4 2 4 Phenotypic Enhancement, Phenotypic Enhancement, Phenotypic Suppression, Phenotypic Suppression
TAF14 YPL129W Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes physical 4 1 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TFG1 YGR186W TFIIF (Transcription Factor II) largest subunit physical 4 1 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ASR1 YPR093C Ubiquitin ligase that modifies and regulates RNA Pol II physical 4 1 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPO21 YDL140C RNA polymerase II largest subunit B220 genetic 4 4 3 Synthetic Growth Defect, Synthetic Lethality, Phenotypic Suppression, Synthetic Rescue
RPB4 YJL140W RNA polymerase II subunit B32 genetic 4 1 3 Synthetic Lethality, Synthetic Lethality, Synthetic Lethality, Synthetic Lethality
TFG2 YGR005C TFIIF (Transcription Factor II) middle subunit physical 4 1 3 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
DST1 YGL043W General transcription elongation factor TFIIS physical 3 2 3 Affinity Capture-MS, PCA, PCA
IWR1 YDL115C RNA polymerase II transport factor, conserved from yeast to humans physical 3 1 3 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RTR1 YER139C Dual specificity protein phosphatase genetic 3 3 1 Synthetic Growth Defect, Synthetic Lethality, Dosage Rescue
MFT1 YML062C Subunit of the THO complex genetic 2 2 2 Synthetic Rescue, Synthetic Growth Defect
RAD16 YBR114W Nucleotide excision repair (NER) protein genetic 2 2 2 Phenotypic Enhancement, Synthetic Growth Defect
RPB10 YOR210W RNA polymerase subunit ABC10-beta physical 2 2 2 Affinity Capture-Western, Affinity Capture-MS
NPA3 YJR072C Member of the conserved GPN-loop GTPase family physical 2 2 2 Affinity Capture-MS, Protein-peptide
PUF4 YGL014W Member of the PUF protein family physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
TFG1 YGR186W TFIIF (Transcription Factor II) largest subunit genetic 2 1 2 Synthetic Growth Defect, Synthetic Growth Defect
SET2 YJL168C Histone methyltransferase with a role in transcriptional elongation physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
SPT4 YGR063C Spt4p/5p (DSIF) transcription elongation factor complex subunit physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
RTR1 YER139C Dual specificity protein phosphatase physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
SPT3 YDR392W Subunit of the SAGA and SAGA-like transcriptional regulatory complexes genetic 2 1 2 Synthetic Lethality, Synthetic Lethality
GCN5 YGR252W Catalytic subunit of ADA and SAGA histone acetyltransferase complexes genetic 2 1 2 Synthetic Lethality, Synthetic Lethality
MPT5 YGL178W mRNA-binding protein of the PUF family physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ESA1 YOR244W Catalytic subunit of the histone acetyltransferase complex (NuA4) genetic 2 1 1 Synthetic Growth Defect, Synthetic Growth Defect
TAF9 YMR236W Subunit (17 kDa) of TFIID and SAGA complexes genetic 2 1 1 Synthetic Lethality, Synthetic Lethality
FKH1 YIL131C Forkhead family transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
SFP1 YLR403W Regulates transcription of ribosomal protein and biogenesis genes regulation 1 1 1 DNA to cDNA expression microarray evidence
XBP1 YIL101C Transcriptional repressor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
REB1 YBR049C RNA polymerase I enhancer binding protein regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MED4 YOR174W Subunit of the RNA polymerase II mediator complex regulation 1 1 1 chromatin immunoprecipitation-chip evidence
SPT7 YBR081C Subunit of the SAGA transcriptional regulatory complex regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CDC73 YLR418C Component of the Paf1p complex physical 1 1 1 Affinity Capture-MS
RPB2 YOR151C RNA polymerase II second largest subunit B150 genetic 1 1 1 Synthetic Lethality
BRE1 YDL074C E3 ubiquitin ligase genetic 1 1 1 Synthetic Lethality
RPB5 YBR154C RNA polymerase subunit ABC27 genetic 1 1 1 Synthetic Growth Defect
HPR1 YDR138W Subunit of THO/TREX complexes genetic 1 1 1 Synthetic Rescue
ACT1 YFL039C Actin, structural protein in cytoskeleton genetic 1 1 1 Synthetic Haploinsufficiency
IMD2 YHR216W Inosine monophosphate dehydrogenase genetic 1 1 1 Dosage Rescue
CCR4 YAL021C Component of the CCR4-NOT transcriptional complex physical 1 1 1 Affinity Capture-RNA
NAB2 YGL122C Nuclear polyadenylated RNA-binding protein genetic 1 1 1 Synthetic Lethality
DHH1 YDL160C Cytoplasmic DEAD-box helicase and mRNA decapping activator physical 1 1 1 Affinity Capture-RNA
CRM1 YGR218W Nuclear export factor, exportin physical 1 1 1 Affinity Capture-MS
GAL11 YOL051W Subunit of the RNA polymerase II mediator complex physical 1 1 1 PCA
ADA2 YDR448W Transcription coactivator genetic 1 1 1 Synthetic Lethality
FYV4 YHR059W Protein of unknown function genetic 1 1 1 Synthetic Growth Defect
MEC1 YBR136W Genome integrity checkpoint protein and PI kinase superfamily member genetic 1 1 1 Negative Genetic
MYO2 YOR326W Type V myosin motor involved in actin-based transport of cargos genetic 1 1 1 Negative Genetic
HTZ1 YOL012C Histone variant H2AZ genetic 1 1 1 Synthetic Lethality
GIM5 YML094W Subunit of the heterohexameric cochaperone prefoldin complex genetic 1 1 1 Synthetic Lethality
HTA1 YDR225W Histone H2A genetic 1 1 1 Negative Genetic
RAD52 YML032C Protein involved in homologous recombination genetic 1 1 1 Synthetic Growth Defect
RFC1 YOR217W Subunit of heteropentameric Replication factor C (RF-C) genetic 1 1 1 Synthetic Growth Defect
RNA14 YMR061W Component of the cleavage and polyadenylation factor I (CF I) genetic 1 1 1 Synthetic Lethality
TAF14 YPL129W Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes genetic 1 1 1 Synthetic Growth Defect
RPC10 YHR143W-A RNA polymerase subunit ABC10-alpha, found in RNA pol I, II, and III physical 1 1 1 Affinity Capture-Western
SRB5 YGR104C Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-MS
TFA1 YKL028W TFIIE large subunit physical 1 1 1 Two-hybrid
TFA1 YKL028W TFIIE large subunit genetic 1 1 1 Synthetic Lethality
RPO31 YOR116C RNA polymerase III largest subunit C160 physical 1 1 1 Two-hybrid
RVS167 YDR388W Calmodulin-binding actin-associated protein physical 1 1 1 Affinity Capture-MS
SPT5 YML010W Spt4p/5p (DSIF) transcription elongation factor complex subunit physical 1 1 1 Affinity Capture-MS
SRB4 YER022W Subunit of the RNA polymerase II mediator complex physical 1 1 1 Co-purification
SRB4 YER022W Subunit of the RNA polymerase II mediator complex genetic 1 1 1 Synthetic Lethality
TPK2 YPL203W cAMP-dependent protein kinase catalytic subunit physical 1 1 1 Affinity Capture-MS
TOM1 YDR457W E3 ubiquitin ligase of the hect-domain class physical 1 1 1 Affinity Capture-MS
RPC82 YPR190C RNA polymerase III subunit C82 physical 1 1 1 Affinity Capture-MS
SUA7 YPR086W Transcription factor TFIIB genetic 1 1 1 Synthetic Rescue
SPT7 YBR081C Subunit of the SAGA transcriptional regulatory complex genetic 1 1 1 Synthetic Lethality
SWC3 YAL011W Protein of unknown function genetic 1 1 1 Synthetic Growth Defect
SWC5 YBR231C Component of the SWR1 complex genetic 1 1 1 Synthetic Growth Defect
VPS72 YDR485C Htz1p-binding component of the SWR1 complex genetic 1 1 1 Synthetic Growth Defect
SOH1 YGL127C Subunit of the RNA polymerase II mediator complex genetic 1 1 1 Synthetic Lethality
VPS71 YML041C Nucleosome-binding component of the SWR1 complex genetic 1 1 1 Synthetic Growth Defect
RVS161 YCR009C Amphiphysin-like lipid raft protein genetic 1 1 1 Synthetic Growth Defect
SUB1 YMR039C Transcriptional regulator genetic 1 1 1 Synthetic Rescue
SIZ1 YDR409W SUMO E3 ligase genetic 1 1 1 Synthetic Growth Defect
SNC2 YOR327C Vesicle membrane receptor protein (v-SNARE) genetic 1 1 1 Positive Genetic
NGG1 YDR176W Subunit of chromatin modifying histone acetyltransferase complexes genetic 1 1 1 Synthetic Lethality
PUF3 YLL013C Protein of the mitochondrial outer surface physical 1 1 1 Affinity Capture-RNA
EGD2 YHR193C Alpha subunit of the nascent polypeptide-associated complex (NAC) genetic 1 1 1 Synthetic Growth Defect
CDC5 YMR001C Polo-like kinase required for mitotic exit physical 1 1 1 Proximity Label-MS
ASA1 YPR085C Subunit of the ASTRA complex, involved in chromatin remodeling genetic 1 1 1 Negative Genetic
RAD6 YGL058W Ubiquitin-conjugating enzyme (E2) genetic 1 1 1 Synthetic Lethality
HHT1 YBR010W Histone H3 genetic 1 1 1 Synthetic Lethality
MRE11 YMR224C Nuclease subunit of the MRX complex with Rad50p and Xrs2p genetic 1 1 1 Synthetic Growth Defect
PTC6 YCR079W Mitochondrial type 2C protein phosphatase (PP2C) physical 1 1 1 Affinity Capture-MS
ISC10 YER180C Meiosis-specific MAPK inhibitor physical 1 1 1 Two-hybrid
ELP3 YPL086C Subunit of Elongator complex genetic 1 1 1 Synthetic Lethality
NFI1 YOR156C SUMO E3 ligase genetic 1 1 1 Synthetic Growth Defect
RAD9 YDR217C DNA damage-dependent checkpoint protein genetic 1 1 1 Synthetic Growth Defect
NMD2 YHR077C Protein involved in the nonsense-mediated mRNA decay (NMD) pathway genetic 1 1 1 Synthetic Growth Defect
HHT2 YNL031C Histone H3 physical 1 1 1 PCA
GDH3 YAL062W NADP(+)-dependent glutamate dehydrogenase physical 1 1 1 Affinity Capture-MS
ALG3 YBL082C Dolichol-P-Man dependent alpha(1-3) mannosyltransferase physical 1 1 1 Affinity Capture-MS
HRQ1 YDR291W 3'-5' DNA helicase of the conserved RecQ family genetic 1 1 1 Synthetic Growth Defect
IAI11 YBL059W Putative mitochondrial protein of unknown function physical 1 1 1 Affinity Capture-MS
HVG1 YER039C Protein of unknown function physical 1 1 1 Two-hybrid
LGE1 YPL055C Protein involved in histone H2B ubiquitination genetic 1 1 1 Synthetic Lethality