| ECM2 | YBR065C | Pre-mRNA splicing factor | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | NMD2 | YHR077C | Protein involved in the nonsense-mediated mRNA decay (NMD) pathway | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | RGD1 | YBR260C | GTPase-activating protein (RhoGAP) for Rho3p and Rho4p | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | RGR1 | YLR071C | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | XBP1 | YIL101C | Transcriptional repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RAP1 | YNL216W | Essential DNA-binding transcription regulator that binds many loci | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | YAP1 | YML007W | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SUA7 | YPR086W | Transcription factor TFIIB | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SPT3 | YDR392W | Subunit of the SAGA and SAGA-like transcriptional regulatory complexes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CST6 | YIL036W | Basic leucine zipper (bZIP) transcription factor from ATF/CREB family | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | PDR1 | YGL013C | Transcription factor that regulates the pleiotropic drug response | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | PHO2 | YDL106C | Homeobox transcription factor | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | IPI1 | YHR085W | Component of the Rix1 complex and possibly pre-replicative complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UTP15 | YMR093W | Nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAT1 | YOR048C | Nuclear 5' to 3' single-stranded RNA exonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRB2 | YHR041C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DST1 | YGL043W | General transcription elongation factor TFIIS | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GIR2 | YDR152W | Highly-acidic RWD domain-containing cytoplasmic protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | ARP3 | YJR065C | Essential component of the Arp2/3 complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC11 | YJR076C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BNI1 | YNL271C | Formin | physical | 1 | 1 | 1 | Reconstituted Complex | 
            
                | CTK1 | YKL139W | Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GDI1 | YER136W | GDP dissociation inhibitor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | HSC82 | YMR186W | Cytoplasmic chaperone of the Hsp90 family | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MRPL1 | YDR116C | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRP49 | YKL167C | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CMR1 | YDL156W | Nuclear protein with role in transcription, protein quality control | physical | 1 | 1 | 1 | PCA | 
            
                | CMD1 | YBR109C | Calmodulin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HSP82 | YPL240C | Hsp90 chaperone | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NAB3 | YPL190C | RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MIR1 | YJR077C | Mitochondrial phosphate carrier | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RTS1 | YOR014W | B-type regulatory subunit of protein phosphatase 2A (PP2A) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CCT2 | YIL142W | Subunit beta of the cytosolic chaperonin Cct ring complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP9 | YDL030W | Subunit of the SF3a splicing factor complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAK1 | YER129W | Upstream serine/threonine kinase for the SNF1 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SIP2 | YGL208W | One of three alternate beta subunits of the Snf1 kinase complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | UBA3 | YPR066W | Protein that activates Rub1p (NEDD8) before neddylation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TLG2 | YOL018C | Syntaxin-like t-SNARE | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VRP1 | YLR337C | Verprolin, proline-rich actin-associated protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HYP2 | YEL034W | Translation elongation factor eIF-5A | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC53 | YDL132W | Cullin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RHO5 | YNL180C | Non-essential small GTPase of the Rho/Rac family of Ras-like proteins | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | KOG1 | YHR186C | Subunit of TORC1 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | QCR2 | YPR191W | Subunit 2 of ubiquinol cytochrome-c reductase (Complex III) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG10 | YPL028W | Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPO12 | YHR152W | Nucleolar protein of unknown function | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GLE1 | YDL207W | Cytoplasmic nucleoporin required for polyadenylated mRNA export | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DIA2 | YOR080W | Origin-binding F-box protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRE11 | YMR224C | Nuclease subunit of the MRX complex with Rad50p and Xrs2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PHO86 | YJL117W | Endoplasmic reticulum (ER) resident protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RNR3 | YIL066C | Minor isoform of large subunit of ribonucleotide-diphosphate reductase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GNA1 | YFL017C | Glucosamine-6-phosphate acetyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CWC24 | YLR323C | General splicing factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC34 | YDR054C | Ubiquitin-conjugating enzyme (E2) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AIM18 | YHR198C | Protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CET1 | YPL228W | RNA 5'-triphosphatase involved in mRNA 5' capping | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CSE4 | YKL049C | Centromeric histone H3-like protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KAR3 | YPR141C | Minus-end-directed microtubule motor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | OST2 | YOR103C | Epsilon subunit of the oligosaccharyltransferase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STU1 | YBL034C | Microtubule plus-end-tracking non-motor protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TUB4 | YLR212C | Gamma-tubulin | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | MCM7 | YBR202W | Component of the Mcm2-7 hexameric helicase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG25 | YGR060W | C-4 methyl sterol oxidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAC1 | YMR021C | Copper-sensing transcription factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAM16 | YJL104W | Subunit of the import motor (PAM complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification | 
            
                | TAO3 | YIL129C | Component of the RAM signaling network | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PET127 | YOR017W | Protein with a role in 5'-end processing of mitochondrial RNAs | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BTS1 | YPL069C | Geranylgeranyl diphosphate synthase (GGPPS) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VMA21 | YGR105W | Integral membrane protein required for V-ATPase function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG7 | YHR072W | Lanosterol synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NKP2 | YLR315W | Central kinetochore protein and subunit of the Ctf19 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAS10 | YDL153C | Subunit of U3-containing Small Subunit (SSU) processome complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YCR102C | YCR102C | Putative quinone oxidoreductase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS6A | YPL090C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PHB2 | YGR231C | Subunit of the prohibitin complex (Phb1p-Phb2p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ULP1 | YPL020C | Protease that specifically cleaves Smt3p protein conjugates | physical | 1 | 1 | 1 | PCA | 
            
                | COX10 | YPL172C | Heme A:farnesyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MDM38 | YOL027C | Membrane-associated mitochondrial ribosome receptor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS27B | YHR021C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS5 | YOR069W | Nexin-1 homolog | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMC1 | YGL006W | Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COX7 | YMR256C | Subunit VII of cytochrome c oxidase (Complex IV) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VHT1 | YGR065C | High-affinity plasma membrane H+-biotin (vitamin H) symporter | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | TYR1 | YBR166C | Prephenate dehydrogenase involved in tyrosine biosynthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAM50 | YNL026W | Component of the Sorting and Assembly Machinery (SAM) complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MRX14 | YDR115W | Putative mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IZH2 | YOL002C | Plasma membrane receptor for plant antifungal osmotin | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | YET1 | YKL065C | Endoplasmic reticulum transmembrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FLX1 | YIL134W | Mitochondrial flavin adenine dinucleotide transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PET8 | YNL003C | S-adenosylmethionine transporter of the mitochondrial inner membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPE1 | YKL184W | Ornithine decarboxylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PTH1 | YHR189W | One of two mitochondrially-localized peptidyl-tRNA hydrolases | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | QRI5 | YLR204W | Mitochondrial inner membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HMI1 | YOL095C | Mitochondrial inner membrane localized ATP-dependent DNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PET20 | YPL159C | Mitochondrial protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KCH1 | YJR054W | Potassium transporter that mediates K+ influx | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRF1 | YDL133W | Regulator of phospholipase D (Spo14p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAU4 | YLR461W | Member of the seripauperin multigene family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YGR237C | YGR237C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YGL114W | YGL114W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ROF1 | YHR177W | Putative transcription factor containing a WOPR domain | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YGR050C | YGR050C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YJR098C | YJR098C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic |