| RSA1 | YPL193W | Protein involved in the assembly of 60S ribosomal subunits | physical | 13 | 7 | 7 | Two-hybrid, Reconstituted Complex, Co-purification, Reconstituted Complex, Protein-peptide, Two-hybrid, Co-crystal Structure, Affinity Capture-MS, Co-purification, Reconstituted Complex, Reconstituted Complex, Affinity Capture-Western, Reconstituted Complex | 
            
                | NOP56 | YLR197W | Essential evolutionarily-conserved nucleolar protein | physical | 8 | 3 | 6 | Affinity Capture-Western, Two-hybrid, Affinity Capture-MS, Two-hybrid, Two-hybrid, Affinity Capture-Western, Two-hybrid, Two-hybrid | 
            
                | NOP58 | YOR310C | Protein involved in producing mature rRNAs and snoRNAs | physical | 7 | 3 | 5 | Affinity Capture-MS, Two-hybrid, Two-hybrid, Two-hybrid, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western | 
            
                | NOP1 | YDL014W | Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus | physical | 5 | 1 | 3 | Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid | 
            
                | BRR2 | YER172C | RNA-dependent ATPase RNA helicase (DEIH box) | physical | 4 | 3 | 4 | Affinity Capture-MS, Co-purification, Co-purification, Affinity Capture-Western | 
            
                | HIT1 | YJR055W | Protein involved in C/D snoRNP assembly | physical | 4 | 4 | 3 | Affinity Capture-MS, Co-purification, Two-hybrid, Reconstituted Complex | 
            
                | BCD1 | YHR040W | Essential protein required for the accumulation of box C/D snoRNA | physical | 3 | 2 | 2 | Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western | 
            
                | MAK21 | YDR060W | Constituent of 66S pre-ribosomal particles | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | ECM16 | YMR128W | Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | NOC4 | YPR144C | Nucleolar protein | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | MPT5 | YGL178W | mRNA-binding protein of the PUF family | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | ChEC-Seq experiments | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | SPT10 | YJL127C | Histone H3 acetylase with a role in transcriptional regulation | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | ChEC-Seq experiments | 
            
                | GCR1 | YPL075W | Transcriptional activator of genes involved in glycolysis | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | SPT20 | YOL148C | Subunit of the SAGA transcriptional regulatory complex | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | RAP1 | YNL216W | Essential DNA-binding transcription regulator that binds many loci | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | REB1 | YBR049C | RNA polymerase I enhancer binding protein | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CST6 | YIL036W | Basic leucine zipper (bZIP) transcription factor from ATF/CREB family | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | DSN1 | YIR010W | Essential component of the outer kinetochore MIND complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPO21 | YDL140C | RNA polymerase II largest subunit B220 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPB2 | YOR151C | RNA polymerase II second largest subunit B150 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RVB1 | YDR190C | ATP-dependent DNA helicase, also known as pontin | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BRX1 | YOL077C | Nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DBP9 | YLR276C | DEAD-box protein required for 27S rRNA processing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HAS1 | YMR290C | ATP-dependent RNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK16 | YAL025C | Essential nuclear protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NIP7 | YPL211W | Nucleolar protein required for 60S ribosome subunit biogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP2 | YNL061W | rRNA m5C methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPF2 | YKR081C | Essential protein involved in rRNA maturation and ribosomal assembly | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPF2 | YKR081C | Essential protein involved in rRNA maturation and ribosomal assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RLP7 | YNL002C | Nucleolar protein similar to large ribosomal subunit L7 proteins | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NOP9 | YJL010C | Essential subunit of U3-containing 90S preribosome | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PRP19 | YLL036C | Splicing factor associated with the spliceosome | physical | 1 | 1 | 1 | Co-purification | 
            
                | PRP43 | YGL120C | RNA helicase in the DEAH-box family | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SMB1 | YER029C | Core Sm protein Sm B | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NOP15 | YNL110C | Constituent of 66S pre-ribosomal particles | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | DBP3 | YGL078C | RNA-Dependent ATPase, member of DExD/H-box family | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NHP2 | YDL208W | Protein related to mammalian high mobility group (HMG) proteins | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP56 | YLR197W | Essential evolutionarily-conserved nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DBP7 | YKR024C | Putative ATP-dependent RNA helicase of the DEAD-box family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK21 | YDR060W | Constituent of 66S pre-ribosomal particles | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RRP5 | YMR229C | RNA binding protein involved in synthesis of 18S and 5.8S rRNAs | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RRP5 | YMR229C | RNA binding protein involved in synthesis of 18S and 5.8S rRNAs | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AIR2 | YDL175C | RNA-binding subunit of the TRAMP nuclear RNA surveillance complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | LSM1 | YJL124C | Lsm (Like Sm) protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PRP3 | YDR473C | Splicing factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP1 | YDL014W | Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CSL4 | YNL232W | Exosome non-catalytic core component | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPC34 | YNR003C | RNA polymerase III subunit C34 | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPA135 | YPR010C | RNA polymerase I second largest subunit A135 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RRP8 | YDR083W | Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MED7 | YOL135C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RGR1 | YLR071C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARX1 | YDR101C | Nuclear export factor for the ribosomal pre-60S subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | REI1 | YBR267W | Cytoplasmic pre-60S factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPN12 | YFR052W | Subunit of the 19S regulatory particle of the 26S proteasome lid | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARD1 | YHR013C | Subunit of protein N-terminal acetyltransferase NatA | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ARP3 | YJR065C | Essential component of the Arp2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BET3 | YKR068C | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ASC1 | YMR116C | G-protein beta subunit and guanine dissociation inhibitor for Gpa2p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ASC1 | YMR116C | G-protein beta subunit and guanine dissociation inhibitor for Gpa2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC10 | YCR002C | Component of the septin ring, required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDA1 | YGR245C | Protein required for actin organization and passage through Start | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DCP2 | YNL118C | Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CIA2 | YHR122W | Component of cytosolic iron-sulfur protein assembly (CIA) machinery | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ENP1 | YBR247C | Protein associated with U3 and U14 snoRNAs | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ENP1 | YBR247C | Protein associated with U3 and U14 snoRNAs | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRR1 | YCL059C | Nucleolar protein required for rRNA synthesis and ribosomal assembly | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | KRR1 | YCL059C | Nucleolar protein required for rRNA synthesis and ribosomal assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK5 | YBR142W | Essential nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MED6 | YHR058C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BUD3 | YCL014W | Guanine nucleotide exchange factor (GEF) for Cdc42p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HTZ1 | YOL012C | Histone variant H2AZ | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NUP116 | YMR047C | FG-nucleoporin component of central core of the nuclear pore complex | physical | 1 | 1 | 1 | Co-purification | 
            
                | POP7 | YBR167C | Subunit of RNase MRP, nuclear RNase P and telomerase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BLM10 | YFL007W | Proteasome activator | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP4 | YPR178W | Splicing factor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PRP4 | YPR178W | Splicing factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DAM1 | YGR113W | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | INO4 | YOL108C | Transcription factor involved in phospholipid synthesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BUD21 | YOR078W | Component of small ribosomal subunit (SSU) processosome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RFC5 | YBR087W | Subunit of heteropentameric Replication factor C (RF-C) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RFX1 | YLR176C | Major transcriptional repressor of DNA-damage-regulated genes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP18 | YGR006W | Splicing factor and component of snRNP U5 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GCN5 | YGR252W | Catalytic subunit of ADA and SAGA histone acetyltransferase complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SGF29 | YCL010C | Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CCT6 | YDR188W | Subunit of the cytosolic chaperonin Cct ring complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SBP1 | YHL034C | Protein that binds eIF4G and has a role in repression of translation | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | RAD1 | YPL022W | Single-stranded DNA endonuclease (with Rad10p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DIM1 | YPL266W | Essential 18S rRNA dimethylase (dimethyladenosine transferase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAF20 | YOR276W | Phosphoprotein of the mRNA cap-binding complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CDC53 | YDL132W | Cullin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PBS2 | YJL128C | MAP kinase kinase of the HOG signaling pathway | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NOP6 | YDL213C | rRNA-binding protein required for 40S ribosomal subunit biogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PXR1 | YGR280C | Essential protein involved in rRNA and snoRNA maturation | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | COF1 | YLL050C | Cofilin, involved in pH-dependent actin filament depolarization | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK11 | YKL021C | Protein involved in an early step of 60S ribosomal subunit biogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEN15 | YMR059W | Subunit of the tRNA splicing endonuclease | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPP0 | YLR340W | Conserved ribosomal protein P0 of the ribosomal stalk | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SKI2 | YLR398C | Ski complex component and putative RNA helicase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PAP2 | YOL115W | Non-canonical poly(A) polymerase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RTT103 | YDR289C | Protein involved in transcription termination by RNA polymerase II | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FAL1 | YDR021W | Nucleolar protein required for maturation of 18S rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FCF1 | YDR339C | PINc domain endonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EXO70 | YJL085W | Subunit of the exocyst complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MMS22 | YLR320W | Subunit of E3 ubiquitin ligase complex involved in replication repair | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MLP2 | YIL149C | Myosin-like protein associated with the nuclear envelope | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | DAD1 | YDR016C | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MTQ2 | YDR140W | S-adenosylmethionine-dependent methyltransferase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HCS1 | YKL017C | Hexameric DNA polymerase alpha-associated DNA helicase A | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | JLP1 | YLL057C | Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NNF1 | YJR112W | Essential component of the outer kinetochore MIND complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS13 | YDR064W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS13 | YDR064W | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BRF1 | YGR246C | TFIIIB B-related factor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BRE5 | YNR051C | Ubiquitin protease cofactor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | DAL81 | YIR023W | Positive regulator of genes in multiple nitrogen degradation pathways | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS1A | YLR441C | Ribosomal protein of the small (40S) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS8A | YBL072C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS17A | YML024W | Ribosomal protein 51 (rp51) of the small (40s) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS7A | YOR096W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL22A | YLR061W | Ribosomal 60S subunit protein L22A | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS22A | YJL190C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BFR1 | YOR198C | Component of mRNP complexes associated with polyribosomes | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | OST2 | YOR103C | Epsilon subunit of the oligosaccharyltransferase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HSF1 | YGL073W | Trimeric heat shock transcription factor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CSG2 | YBR036C | Endoplasmic reticulum membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ABF1 | YKL112W | DNA binding protein with possible chromatin-reorganizing activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PEX30 | YLR324W | ER-resident protein involved in peroxisomal biogenesis | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PEX27 | YOR193W | Peripheral peroxisomal membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL25 | YOL127W | Ribosomal 60S subunit protein L25 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL31A | YDL075W | Ribosomal 60S subunit protein L31A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS2 | YGL123W | Protein component of the small (40S) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS3 | YNL178W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RIM20 | YOR275C | Protein involved in proteolytic activation of Rim101p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EIS1 | YMR031C | Component of the eisosome required for proper eisosome assembly | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CIN2 | YPL241C | GTPase-activating protein (GAP) for Cin4p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS20 | YHL015W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MOG1 | YJR074W | Conserved nuclear protein that interacts with GTP-Gsp1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS14A | YCR031C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YRA1 | YDR381W | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YAP1801 | YHR161C | Protein of the AP180 family, involved in clathrin cage assembly | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | VHR1 | YIL056W | Transcriptional activator | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SPC1 | YJR010C-A | Subunit of the signal peptidase complex (SPC) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | UBP15 | YMR304W | Ubiquitin-specific protease involved in protein deubiquitination | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | WHI3 | YNL197C | RNA binding protein that modulates mRNA stability | physical | 1 | 1 | 1 | Protein-RNA | 
            
                | UBP3 | YER151C | Ubiquitin-specific protease that cleaves Ub-protein fusions | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SNU66 | YOR308C | Component of the U4/U6.U5 snRNP complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SPT7 | YBR081C | Subunit of the SAGA transcriptional regulatory complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TAF5 | YBR198C | Subunit (90 kDa) of TFIID and SAGA complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SRO9 | YCL037C | Cytoplasmic RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | UTP4 | YDR324C | Subunit of U3-containing 90S preribosome and SSU processome complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YCF1 | YDR135C | Vacuolar glutathione S-conjugate transporter | physical | 1 | 1 | 1 | PCA | 
            
                | TOM1 | YDR457W | E3 ubiquitin ligase of the hect-domain class | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | UTP10 | YJL109C | Nucleolar protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | UTP21 | YLR409C | Subunit of U3-containing 90S preribosome and SSU processome complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TFC6 | YDR362C | Subunit of RNA polymerase III transcription initiation factor complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | UTP14 | YML093W | Subunit of U3-containing Small Subunit (SSU) processome complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TRF5 | YNL299W | Non-canonical poly(A) polymerase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TCP1 | YDR212W | Alpha subunit of chaperonin-containing T-complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | TMA23 | YMR269W | Nucleolar protein implicated in ribosome biogenesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | UTP5 | YDR398W | Subunit of U3-containing Small Subunit (SSU) processome complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UTP9 | YHR196W | Nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSL1 | YLR005W | Subunit of the core form of RNA polymerase transcription factor TFIIH | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAD3 | YLR316C | Subunit of tRNA-specific adenosine-34 deaminase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRV2 | YNL138W | CAP (cyclase-associated protein) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VID24 | YBR105C | GID Complex regulatory subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YGL036W | YGL036W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRB2 | YHR041C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YKL050C | YKL050C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRP40 | YKR092C | Nucleolar serine-rich protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS21 | YOR089C | Endosomal Rab family GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPK9 | YOR291W | Vacuolar protein with a possible role in sequestering heavy metals | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ULA1 | YPL003W | Protein that activates Rub1p (NEDD8) before neddylation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SUR1 | YPL057C | Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPL068C | YPL068C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TGS1 | YPL157W | Trimethyl guanosine synthase, conserved nucleolar methyl transferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL29 | YFR032C-A | Ribosomal 60S subunit protein L29 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS0A | YGR214W | Ribosomal 40S subunit protein S0A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS18A | YDR450W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PIH1 | YHR034C | Component of the conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PIH1 | YHR034C | Component of the conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BUD22 | YMR014W | Protein required for rRNA maturation and ribosomal subunit biogenesis | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GTB1 | YDR221W | Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BPL1 | YDL141W | Biotin:apoprotein ligase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RAD30 | YDR419W | DNA polymerase eta | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SLF1 | YDR515W | RNA binding protein that associates with polysomes | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | RIM8 | YGL045W | Protein involved in proteolytic activation of Rim101p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDO1 | YLR022C | Guanine nucleotide exchange factor (GEF) for Ria1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CUZ1 | YNL155W | Protein with a role in the ubiquitin-proteasome pathway | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GIS2 | YNL255C | Translational activator for mRNAs with internal ribosome entry sites | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MSB1 | YOR188W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS6A | YPL090C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS9A | YPL081W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL24A | YGL031C | Ribosomal 60S subunit protein L24A | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS10A | YOR293W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RSA3 | YLR221C | Protein with a likely role in ribosomal maturation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL26A | YLR344W | Ribosomal 60S subunit protein L26A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS12 | YOR369C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS19A | YOL121C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | APJ1 | YNL077W | Hsp40 chaperone with a role in SUMO-mediated protein degradation | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | GPI12 | YMR281W | ER membrane protein involved in the second step of GPI anchor assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI19 | YDR437W | Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS27A | YKL156W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RIM13 | YMR154C | Calpain-like cysteine protease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDD4 | YPR022C | Putative transcription factor, as suggested by computational analysis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EFG1 | YGR271C-A | Ribosome biogenesis factor required for maturation of 18S rRNA | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SIC1 | YLR079W | Cyclin-dependent kinase inhibitor (CKI) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CGR1 | YGL029W | Protein involved in nucleolar integrity and processing of pre-rRNA | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC8 | YJR057W | Nucleoside monophosphate and nucleoside diphosphate kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAM50 | YNL026W | Component of the Sorting and Assembly Machinery (SAM) complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RMD8 | YFR048W | Cytosolic protein required for sporulation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MDM35 | YKL053C-A | Mitochondrial intermembrane space protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC1 | YDR182W | Putative mannose-ethanolamine phosphate phosphodiesterase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS15 | YOL040C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BCD1 | YHR040W | Essential protein required for the accumulation of box C/D snoRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RKM5 | YLR137W | Protein lysine methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARR2 | YPR200C | Arsenate reductase required for arsenate resistance | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SHQ1 | YIL104C | Chaperone protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM9 | YMR063W | Plasma membrane protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic |