| ERP2 | YAL007C | Member of the p24 family involved in ER to Golgi transport | physical | 10 | 3 | 6 | Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-fractionation, Co-fractionation, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS | 
            
                | ERV25 | YML012W | Member of the p24 family involved in ER to Golgi transport | physical | 9 | 4 | 6 | Affinity Capture-MS, Affinity Capture-Western, PCA, Co-fractionation, Co-fractionation, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western | 
            
                | EMP24 | YGL200C | Component of the p24 complex | physical | 9 | 3 | 6 | Affinity Capture-MS, Affinity Capture-Western, Co-fractionation, Co-fractionation, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western | 
            
                | ERV14 | YGL054C | COPII-coated vesicle protein | genetic | 5 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GET1 | YGL020C | Subunit of the GET complex | genetic | 5 | 2 | 3 | Negative Genetic, Negative Genetic, Phenotypic Suppression, Phenotypic Suppression, Negative Genetic | 
            
                | DGK1 | YOR311C | Diacylglycerol kinase | genetic | 4 | 2 | 3 | Positive Genetic, Positive Genetic, Negative Genetic, Negative Genetic | 
            
                | GET2 | YER083C | Subunit of the GET complex | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ERP4 | YOR016C | Member of the p24 family involved in ER to Golgi transport | physical | 3 | 2 | 2 | PCA, Affinity Capture-MS, Affinity Capture-MS | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | genetic | 3 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic | 
            
                | ELO3 | YLR372W | Elongase | genetic | 3 | 2 | 2 | Phenotypic Suppression, Phenotypic Suppression, Negative Genetic | 
            
                | PMA1 | YGL008C | Plasma membrane P2-type H+-ATPase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RGP1 | YDR137W | Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | IRE1 | YHR079C | Serine-threonine kinase and endoribonuclease | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ICE2 | YIL090W | Integral ER membrane protein with type-III transmembrane domains | genetic | 3 | 1 | 2 | Positive Genetic, Positive Genetic, Positive Genetic | 
            
                | SED5 | YLR026C | cis-Golgi t-SNARE syntaxin | physical | 2 | 2 | 2 | Affinity Capture-Western, Co-purification | 
            
                | ERV29 | YGR284C | Protein localized to COPII-coated vesicles | physical | 2 | 2 | 2 | PCA, Co-fractionation | 
            
                | ECM2 | YBR065C | Pre-mRNA splicing factor | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SEC13 | YLR208W | Structural component of 3 complexes | genetic | 2 | 1 | 2 | Synthetic Rescue, Synthetic Rescue | 
            
                | URA7 | YBL039C | Major CTP synthase isozyme (see also URA8) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SEC28 | YIL076W | Epsilon-COP subunit of the coatomer | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SSU72 | YNL222W | Phosphatase and transcription/RNA-processing factor | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | PMT4 | YJR143C | Protein O-mannosyltransferase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GLO3 | YER122C | ADP-ribosylation factor GTPase activating protein (ARF GAP) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ERD1 | YDR414C | Predicted membrane protein required for lumenal ER protein retention | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ERV25 | YML012W | Member of the p24 family involved in ER to Golgi transport | genetic | 2 | 1 | 1 | Phenotypic Suppression, Phenotypic Suppression | 
            
                | SEY1 | YOR165W | Dynamin-like GTPase that mediates homotypic ER fusion | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | GOT1 | YMR292W | Homodimeric protein that is packaged into COPII vesicles | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | ERP6 | YGL002W | Member of the p24 family involved in ER to Golgi transport | physical | 2 | 1 | 1 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | PIL1 | YGR086C | Eisosome core component | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | SEC66 | YBR171W | Non-essential subunit of Sec63 complex | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | OPI3 | YJR073C | Methylene-fatty-acyl-phospholipid synthase | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | PMR1 | YGL167C | High affinity Ca2+/Mn2+ P-type ATPase | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | SED4 | YCR067C | Integral ER membrane protein that stimulates Sar1p GTPase activity | genetic | 2 | 1 | 1 | Phenotypic Suppression, Phenotypic Suppression | 
            
                | VPS53 | YJL029C | Component of the GARP (Golgi-associated retrograde protein) complex | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | INP53 | YOR109W | Polyphosphatidylinositol phosphatase | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | UTH1 | YKR042W | Mitochondrial inner membrane protein | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | VPS71 | YML041C | Nucleosome-binding component of the SWR1 complex | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | VPS74 | YDR372C | Golgi PI4K effector, PtdIns4P sensor, and retention receptor | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | HTZ1 | YOL012C | Histone variant H2AZ | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | SWC3 | YAL011W | Protein of unknown function | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | VPS72 | YDR485C | Htz1p-binding component of the SWR1 complex | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | VPS54 | YDR027C | Component of the GARP (Golgi-associated retrograde protein) complex | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | SIL1 | YOL031C | Nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | KRE1 | YNL322C | Cell wall glycoprotein involved in beta-glucan assembly | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | ROT2 | YBR229C | Glucosidase II catalytic subunit | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | TLG2 | YOL018C | Syntaxin-like t-SNARE | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | SWC5 | YBR231C | Component of the SWR1 complex | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | MSC1 | YML128C | Protein of unknown function | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | SEC22 | YLR268W | R-SNARE protein | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | GET3 | YDL100C | Guanine nucleotide exchange factor for Gpa1p | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | SUM1 | YDR310C | Transcriptional repressor that regulates middle-sporulation genes | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | TRS85 | YDR108W | Component of transport protein particle (TRAPP) complex III | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | GCS1 | YDL226C | ADP-ribosylation factor GTPase activating protein (ARF GAP) | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | MDY2 | YOL111C | Protein involved in inserting tail-anchored proteins into ER membranes | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | YHR078W | YHR078W | High osmolarity-regulated gene of unknown function | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | OST5 | YGL226C-A | Zeta subunit of the oligosaccharyltransferase complex of the ER lumen | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | BOP2 | YLR267W | Protein of unknown function | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | CYS3 | YAL012W | Cystathionine gamma-lyase | genetic | 2 | 1 | 1 | Phenotypic Suppression, Phenotypic Suppression | 
            
                | BRE5 | YNR051C | Ubiquitin protease cofactor | genetic | 2 | 1 | 1 | Phenotypic Suppression, Phenotypic Suppression | 
            
                | ARP6 | YLR085C | Actin-related protein that binds nucleosomes | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | BUG1 | YDL099W | Cis-golgi localized protein involved in ER to Golgi transport | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | BTS1 | YPL069C | Geranylgeranyl diphosphate synthase (GGPPS) | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | ERG2 | YMR202W | C-8 sterol isomerase | genetic | 2 | 1 | 1 | Phenotypic Suppression, Phenotypic Suppression | 
            
                | CWH41 | YGL027C | Processing alpha glucosidase I | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | CHO2 | YGR157W | Phosphatidylethanolamine methyltransferase (PEMT) | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | ALG12 | YNR030W | Alpha-1,6-mannosyltransferase localized to the ER | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | DIE2 | YGR227W | Dolichyl-phosphoglucose-dependent alpha-1,2-glucosyltransferase | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | CNE1 | YAL058W | Calnexin | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CIN5 | YOR028C | Basic leucine zipper (bZIP) transcription factor of the yAP-1 family | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | ERP2 | YAL007C | Member of the p24 family involved in ER to Golgi transport | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | HHF2 | YNL030W | Histone H4 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PHB1 | YGR132C | Subunit of the prohibitin complex (Phb1p-Phb2p) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SND3 | YBR106W | Involved in SRP-independent protein targeting to the ER | physical | 1 | 1 | 1 | PCA | 
            
                | RPB11 | YOL005C | RNA polymerase II subunit B12.5 | physical | 1 | 1 | 1 | PCA | 
            
                | ORM2 | YLR350W | Protein that mediates sphingolipid homeostasis | physical | 1 | 1 | 1 | PCA | 
            
                | SCS7 | YMR272C | Sphingolipid alpha-hydroxylase | physical | 1 | 1 | 1 | PCA | 
            
                | SEY1 | YOR165W | Dynamin-like GTPase that mediates homotypic ER fusion | physical | 1 | 1 | 1 | PCA | 
            
                | SWP1 | YMR149W | Delta subunit of the oligosaccharyl transferase glycoprotein complex | physical | 1 | 1 | 1 | PCA | 
            
                | UIP4 | YPL186C | Protein that interacts with Ulp1p | physical | 1 | 1 | 1 | PCA | 
            
                | WBP1 | YEL002C | Beta subunit of the oligosaccharyl transferase glycoprotein complex | physical | 1 | 1 | 1 | PCA | 
            
                | PIS1 | YPR113W | Phosphatidylinositol synthase | physical | 1 | 1 | 1 | PCA | 
            
                | ERP1 | YAR002C-A | Member of the p24 family involved in ER to Golgi transport | physical | 1 | 1 | 1 | PCA | 
            
                | ERV29 | YGR284C | Protein localized to COPII-coated vesicles | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | MSC7 | YHR039C | Protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | PKR1 | YMR123W | V-ATPase assembly factor | physical | 1 | 1 | 1 | PCA | 
            
                | GOT1 | YMR292W | Homodimeric protein that is packaged into COPII vesicles | physical | 1 | 1 | 1 | PCA | 
            
                | SUR2 | YDR297W | Sphinganine C4-hydroxylase | physical | 1 | 1 | 1 | PCA | 
            
                | ERV46 | YAL042W | Protein localized to COPII-coated vesicles | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | ERV41 | YML067C | Protein localized to COPII-coated vesicles | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | YIF1 | YNL263C | Integral membrane protein | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | RER1 | YCL001W | Protein involved in retention of membrane proteins | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | YIP3 | YNL044W | Protein localized to COPII vesicles | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | ERV14 | YGL054C | COPII-coated vesicle protein | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | SSH1 | YBR283C | Subunit of the Ssh1 translocon complex | physical | 1 | 1 | 1 | PCA | 
            
                | SPC1 | YJR010C-A | Subunit of the signal peptidase complex (SPC) | physical | 1 | 1 | 1 | PCA | 
            
                | GTT1 | YIR038C | ER associated glutathione S-transferase | physical | 1 | 1 | 1 | PCA | 
            
                | VHS3 | YOR054C | Negative regulatory subunit of protein phosphatase 1 Ppz1p | physical | 1 | 1 | 1 | PCA | 
            
                | RPN1 | YHR027C | Non-ATPase base subunit of the 19S RP of the 26S proteasome | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | PMT1 | YDL095W | Protein O-mannosyltransferase of the ER membrane | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PMT2 | YAL023C | Protein O-mannosyltransferase of the ER membrane | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SRO9 | YCL037C | Cytoplasmic RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SCS2 | YER120W | Integral ER membrane protein, regulates phospholipid metabolism | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ERP3 | YDL018C | Protein with similarity to Emp24p and Erv25p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ERP6 | YGL002W | Member of the p24 family involved in ER to Golgi transport | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | ERP5 | YHR110W | Protein with similarity to Emp24p and Erv25p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ERP5 | YHR110W | Protein with similarity to Emp24p and Erv25p | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification | 
            
                | VPS30 | YPL120W | Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | VPS34 | YLR240W | Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SEC24 | YIL109C | Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SEC23 | YPR181C | GTPase-activating protein, stimulates the GTPase activity of Sar1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SEC13 | YLR208W | Structural component of 3 complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | HSP104 | YLL026W | Disaggregase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PSG1 | YKL077W | Protein that promotes the transport and maturation of Pma1 with Exp1 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MPT5 | YGL178W | mRNA-binding protein of the PUF family | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | MPS3 | YJL019W | Nuclear envelope protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SSA1 | YAL005C | ATPase involved in protein folding and NLS-directed nuclear transport | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | EST1 | YLR233C | TLC1 RNA-associated factor involved in telomere length regulation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KAR2 | YJL034W | ATPase involved in protein import into the ER | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PPH21 | YDL134C | Catalytic subunit of protein phosphatase 2A, PP2A | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | YPL068C | YPL068C | Protein of unknown function | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | HAC1 | YFL031W | Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | YPT6 | YLR262C | Rab family GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NPL3 | YDR432W | RNA-binding protein | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | STE24 | YJR117W | Highly conserved zinc metalloprotease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GYP1 | YOR070C | Cis-golgi GTPase-activating protein (GAP) for yeast Rabs | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIC1 | YLR039C | Protein involved in retrograde transport to the cis-Golgi network | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS1 | YKR001C | Dynamin-like GTPase required for vacuolar sorting | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MON2 | YNL297C | Protein with a role in endocytosis and vacuole integrity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAD27 | YKL113C | 5' to 3' exonuclease, 5' flap endonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SUR1 | YPL057C | Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SFB3 | YHR098C | Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RFT1 | YBL020W | Membrane protein required for translocation of Man5GlcNac2-PP-Dol | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TRS20 | YBR254C | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLY1 | YDR189W | Hydrophilic protein involved in ER/Golgi vesicle trafficking | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC26 | YDR238C | Essential beta-coat protein of the COPI coatomer | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TRS23 | YDR246W | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI8 | YDR331W | Catalytic subunit of the ER membrane GPI transamidase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI16 | YHR188C | Subunit of the glycosylphosphatidylinositol transamidase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAO3 | YIL129C | Component of the RAM signaling network | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YKT6 | YKL196C | Vesicle membrane protein (v-SNARE) with acyltransferase activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMD2 | YLR275W | Core Sm protein Sm D2 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC39 | YLR440C | Component of the Dsl1p tethering complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VTI1 | YMR197C | Protein involved in cis-Golgi membrane traffic | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAP1 | YNL216W | Essential DNA-binding transcription regulator that binds many loci | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LAS17 | YOR181W | Actin assembly factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HEM4 | YOR278W | Uroporphyrinogen III synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GCN4 | YEL009C | bZIP transcriptional activator of amino acid biosynthetic genes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUG1 | YER185W | Plasma membrane protein involved in protoprophyrin and heme transport | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRY3 | YJL078C | GPI-anchored cell wall protein involved in export of sterols | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LHS1 | YKL073W | Molecular chaperone of the endoplasmic reticulum lumen | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ROM2 | YLR371W | Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAH1 | YMR165C | Mg2+-dependent phosphatidate (PA) phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLA2 | YNL243W | Adaptor protein that links actin to clathrin and endocytosis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COG3 | YER157W | Essential component of the conserved oligomeric Golgi complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CMR1 | YDL156W | Nuclear protein with role in transcription, protein quality control | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ATG9 | YDL149W | Transmembrane protein involved in forming Cvt and autophagic vesicles | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BCK1 | YJL095W | MAPKKK acting in the protein kinase C signaling pathway | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CSR2 | YPR030W | Nuclear ubiquitin protein ligase binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARF1 | YDL192W | ADP-ribosylation factor | physical | 1 | 1 | 1 | PCA | 
            
                | AYR1 | YIL124W | Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase | physical | 1 | 1 | 1 | PCA | 
            
                | EPT1 | YHR123W | sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferase | physical | 1 | 1 | 1 | PCA | 
            
                | CBR1 | YIL043C | Cytochrome b reductase and NADH-dependent reductase for Dph3p | physical | 1 | 1 | 1 | PCA | 
            
                | ERG11 | YHR007C | Lanosterol 14-alpha-demethylase | physical | 1 | 1 | 1 | PCA | 
            
                | ATG27 | YJL178C | Type I membrane protein involved in autophagy and the Cvt pathway | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | DET1 | YDR051C | Acid phosphatase | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | CPT1 | YNL130C | Cholinephosphotransferase | physical | 1 | 1 | 1 | PCA | 
            
                | ATG23 | YLR431C | Peripheral membrane protein required for autophagy and CVT | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ATG8 | YBL078C | Ub-like protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BFR1 | YOR198C | Component of mRNP complexes associated with polyribosomes | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | BET1 | YIL004C | Type II membrane protein required for vesicular transport | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | EMP47 | YFL048C | Integral membrane component of ER-derived COPII-coated vesicles | physical | 1 | 1 | 1 | Co-fractionation | 
            
                | CSG2 | YBR036C | Endoplasmic reticulum membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EMC5 | YIL027C | Member of conserved ER transmembrane complex | physical | 1 | 1 | 1 | PCA | 
            
                | ERG25 | YGR060W | C-4 methyl sterol oxidase | physical | 1 | 1 | 1 | PCA | 
            
                | ALG5 | YPL227C | UDP-glucose:dolichyl-phosphate glucosyltransferase | physical | 1 | 1 | 1 | PCA | 
            
                | ERG5 | YMR015C | C-22 sterol desaturase | physical | 1 | 1 | 1 | PCA | 
            
                | CCW12 | YLR110C | Cell wall mannoprotein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ECM4 | YKR076W | S-glutathionyl-(chloro)hydroquinone reductase (GS-HQR) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CRD1 | YDL142C | Cardiolipin synthase | genetic | 1 | 1 | 1 | Synthetic Lethality |