| HOM3 | YER052C | Aspartate kinase (L-aspartate 4-P-transferase) | genetic | 3 | 3 | 2 | Positive Genetic, Synthetic Rescue, Synthetic Lethality | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 2 | 2 | 2 | Affinity Capture-MS, Affinity Capture-RNA | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 2 | 1 | 2 | DNA to cDNA expression microarray evidence, DNA to cDNA expression microarray evidence | 
            
                | SRP1 | YNL189W | Karyopherin alpha homolog | physical | 2 | 1 | 2 | Two-hybrid, Two-hybrid | 
            
                | MNN11 | YJL183W | Subunit of a Golgi mannosyltransferase complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | THR1 | YHR025W | Homoserine kinase | physical | 2 | 1 | 2 | Two-hybrid, Two-hybrid | 
            
                | YPT6 | YLR262C | Rab family GTPase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 2 | 2 | 1 | Positive Genetic, Negative Genetic | 
            
                | SMT3 | YDR510W | Ubiquitin-like protein of the SUMO family | physical | 2 | 2 | 1 | PCA, Affinity Capture-Western | 
            
                | ARP4 | YJL081C | Nuclear actin-related protein involved in chromatin remodeling | genetic | 2 | 1 | 1 | Synthetic Growth Defect, Synthetic Growth Defect | 
            
                | ESA1 | YOR244W | Catalytic subunit of the histone acetyltransferase complex (NuA4) | genetic | 2 | 1 | 1 | Synthetic Lethality, Synthetic Lethality | 
            
                | ALT2 | YDR111C | Catalytically inactive alanine transaminase | genetic | 2 | 1 | 1 | Synthetic Lethality, Synthetic Lethality | 
            
                | SER1 | YOR184W | 3-phosphoserine aminotransferase | genetic | 2 | 1 | 1 | Synthetic Lethality, Synthetic Lethality | 
            
                | AGX1 | YFL030W | Alanine:glyoxylate aminotransferase (AGT) | genetic | 2 | 1 | 1 | Synthetic Lethality, Synthetic Lethality | 
            
                | YNG2 | YHR090C | Subunit of NuA4, an essential histone acetyltransferase complex | genetic | 2 | 1 | 1 | Synthetic Lethality, Synthetic Lethality | 
            
                | SOV1 | YMR066W | Mitochondrial protein of unknown function | genetic | 2 | 1 | 1 | Synthetic Growth Defect, Synthetic Growth Defect | 
            
                | SER2 | YGR208W | Phosphoserine phosphatase of the phosphoglycerate pathway | genetic | 2 | 1 | 1 | Synthetic Lethality, Synthetic Lethality | 
            
                | GCR1 | YPL075W | Transcriptional activator of genes involved in glycolysis | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | MED2 | YDL005C | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | XBP1 | YIL101C | Transcriptional repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SIN4 | YNL236W | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | YAP5 | YIR018W | Basic leucine zipper (bZIP) iron-sensing transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | GCN4 | YEL009C | bZIP transcriptional activator of amino acid biosynthetic genes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CST6 | YIL036W | Basic leucine zipper (bZIP) transcription factor from ATF/CREB family | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | INO4 | YOL108C | Transcription factor involved in phospholipid synthesis | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CKB2 | YOR039W | Beta' regulatory subunit of casein kinase 2 (CK2) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RVB1 | YDR190C | ATP-dependent DNA helicase, also known as pontin | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPF2 | YKR081C | Essential protein involved in rRNA maturation and ribosomal assembly | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RMP1 | YLR145W | Subunit of RNase MRP | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | BRR2 | YER172C | RNA-dependent ATPase RNA helicase (DEIH box) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | LSM1 | YJL124C | Lsm (Like Sm) protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | RPN1 | YHR027C | Non-ATPase base subunit of the 19S RP of the 26S proteasome | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPN10 | YHR200W | Proteasome polyubiquitin receptor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPN11 | YFR004W | Metalloprotease subunit of 19S regulatory particle | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPN3 | YER021W | Essential non-ATPase regulatory subunit of the 26S proteasome lid | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPT6 | YGL048C | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | PRE3 | YJL001W | Beta 1 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | ASF1 | YJL115W | Nucleosome assembly factor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BMH2 | YDR099W | 14-3-3 protein, minor isoform | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ASC1 | YMR116C | G-protein beta subunit and guanine dissociation inhibitor for Gpa2p | physical | 1 | 1 | 1 | Proximity Label-MS | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | EDE1 | YBL047C | Scaffold protein involved in the formation of early endocytic sites | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | FPR1 | YNL135C | Peptidyl-prolyl cis-trans isomerase (PPIase) | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | GLY1 | YEL046C | Threonine aldolase | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | HSC82 | YMR186W | Cytoplasmic chaperone of the Hsp90 family | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | ARP8 | YOR141C | Nuclear actin-related protein involved in chromatin remodeling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NHP10 | YDL002C | Non-essential INO80 chromatin remodeling complex subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DOA4 | YDR069C | Ubiquitin hydrolase | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | HSP82 | YPL240C | Hsp90 chaperone | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | HTA1 | YDR225W | Histone H2A | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PTC4 | YBR125C | Cytoplasmic type 2C protein phosphatase (PP2C) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GAL83 | YER027C | One of three alternate beta-subunits of the Snf1 kinase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPT5 | YOR117W | ATPase of the 19S regulatory particle of the 26S proteasome | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SRO9 | YCL037C | Cytoplasmic RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | TAT1 | YBR069C | Amino acid transporter for valine, leucine, isoleucine, and tyrosine | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | BCK1 | YJL095W | MAPKKK acting in the protein kinase C signaling pathway | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPT4 | YOR259C | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | PSY4 | YBL046W | Regulatory subunit of protein phosphatase PP4 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DNM1 | YLL001W | Dynamin-related GTPase involved in mitochondrial organization | physical | 1 | 1 | 1 | PCA | 
            
                | EGD2 | YHR193C | Alpha subunit of the nascent polypeptide-associated complex (NAC) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | ADO1 | YJR105W | Adenosine kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ASA1 | YPR085C | Subunit of the ASTRA complex, involved in chromatin remodeling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RTK1 | YDL025C | Putative protein kinase, potentially phosphorylated by Cdc28p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HTB1 | YDR224C | Histone H2B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL30 | YBR088C | Proliferating cell nuclear antigen (PCNA) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HOM6 | YJR139C | Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase) | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | PTC7 | YHR076W | Type 2C serine/threonine protein phosphatase (PP2C) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | TEM1 | YML064C | GTPase involved in initiation of Mitotic Exit Network (MEN) | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | KIN28 | YDL108W | Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RAD53 | YPL153C | DNA damage response kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PPZ1 | YML016C | Serine/threonine protein phosphatase Z, isoform of Ppz2p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RNR1 | YER070W | Major isoform of large subunit of ribonucleotide-diphosphate reductase | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | CKI1 | YLR133W | Choline kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MMS22 | YLR320W | Subunit of E3 ubiquitin ligase complex involved in replication repair | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NBP2 | YDR162C | Protein involved in the HOG (high osmolarity glycerol) pathway | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SAP4 | YGL229C | Protein required for function of the Sit4p protein phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BAS1 | YKR099W | Myb-related transcription factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRR2 | YDL214C | Serine/threonine protein kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | HUA1 | YGR268C | Cytoplasmic protein containing a zinc finger domain | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | NFI1 | YOR156C | SUMO E3 ligase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | BRE5 | YNR051C | Ubiquitin protease cofactor | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SAS3 | YBL052C | Histone acetyltransferase catalytic subunit of NuA3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWI6 | YLR182W | Transcription cofactor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BFR1 | YOR198C | Component of mRNP complexes associated with polyribosomes | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | BUB1 | YGR188C | Protein kinase involved in the cell cycle checkpoint into anaphase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DBP5 | YOR046C | Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | ELO3 | YLR372W | Elongase | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | MPS1 | YDL028C | Dual-specificity kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SIP4 | YJL089W | C6 zinc cluster transcriptional activator | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RRD1 | YIL153W | Peptidyl-prolyl cis/trans-isomerase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | STE20 | YHL007C | Cdc42p-activated signal transducing kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SWI4 | YER111C | DNA binding component of the SBF complex (Swi4p-Swi6p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MPT5 | YGL178W | mRNA-binding protein of the PUF family | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SLN1 | YIL147C | Transmembrane histidine phosphotransfer kinase and osmosensor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CCS1 | YMR038C | Copper chaperone for superoxide dismutase Sod1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPT10 | YJL127C | Histone H3 acetylase with a role in transcriptional regulation | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | STE50 | YCL032W | Adaptor protein for various signaling pathways | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HMT1 | YBR034C | Nuclear SAM-dependent mono- and asymmetric methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ALY1 | YKR021W | Alpha arrestin, substrate of calcineurin | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | NNK1 | YKL171W | Protein kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CLA4 | YNL298W | Cdc42p-activated signal transducing kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PAM16 | YJL104W | Subunit of the import motor (PAM complex) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification | 
            
                | RFA2 | YNL312W | Subunit of heterotrimeric Replication Protein A (RPA) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSH1 | YBR283C | Subunit of the Ssh1 translocon complex | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | KAE1 | YKR038C | Highly conserved ATPase of HSP70/DnaK family | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | SOL1 | YNR034W | Protein with a possible role in tRNA export | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SCH9 | YHR205W | AGC family protein kinase | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | PKH3 | YDR466W | Protein kinase with similarity to mammalian PDK1 and yeast Pkh1p/Phk2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPO14 | YKR031C | Phospholipase D | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UBP3 | YER151C | Ubiquitin-specific protease that cleaves Ub-protein fusions | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | UBP13 | YBL067C | Ubiquitin-specific protease that cleaves Ub-protein fusions | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TWF1 | YGR080W | Twinfilin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YCH1 | YGR203W | Phosphatase with sequence similarity to Mih1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YGK3 | YOL128C | Protein kinase related to mammalian GSK-3 glycogen synthase kinases | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VMA21 | YGR105W | Integral membrane protein required for V-ATPase function | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | VOA1 | YGR106C | ER protein that functions in assembly of the V0 sector of V-ATPase | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | TTI2 | YJR136C | Subunit of the ASTRA complex, involved in chromatin remodeling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TUB4 | YLR212C | Gamma-tubulin | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | TEL2 | YGR099W | Subunit of the ASTRA complex, involved in chromatin remodeling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PCC1 | YKR095W-A | Component of the EKC/KEOPS protein complex | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | SPT6 | YGR116W | Nucleosome remodeling protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SNG1 | YGR197C | Protein involved in resistance to nitrosoguanidine and 6-azauracil | genetic | 1 | 1 | 1 | Dosage Rescue |