GEMMER: GEnome-wide tool for Multi-scale Modeling data Extraction and Representation

Standard name	Systematic name	Name description	Description
POP3	YNL282W	Subunit of both RNase MRP and nuclear RNase P	Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; relocalizes to the cytosol in response to hypoxia

Visualize the interactome of POP3

Links to external databases:
SGD \| KEGG \|

Cell cycle phase and timing of transcription peak

Cell cycle phase	Time (min)

CYCLoPs localization & abundance

	WT1	WT2	WT3
Nucleus	0.95	0.899	0.975
Mito	NaN	0.101	NaN

GFP localization & abundance

GFP localization	GFP abundance
nucleus	1360

GO term count

	Metabolism	Cell cycle	Cell division	Signal transduction	DNA replication
POP3	4	0	0	0	0

Enzyme information

Catalyzed reactions in Yeast8

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

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Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
POP4	YBR257W	Subunit of both RNase MRP and nuclear RNase P	physical	6	4	5	Affinity Capture-MS, Two-hybrid, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Co-purification
POP1	YNL221C	Subunit of RNase MRP, nuclear RNase P and telomerase complexes	physical	6	3	5	Affinity Capture-MS, Two-hybrid, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
RPP1	YHR062C	Subunit of both RNase MRP and nuclear RNase P	physical	5	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
FKH1	YIL131C	Forkhead family transcription factor	regulation	4	3	4	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence, chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
FKH2	YNL068C	Forkhead family transcription factor	regulation	3	3	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence, ChEC-Seq experiments
POP7	YBR167C	Subunit of RNase MRP, nuclear RNase P and telomerase	physical	3	2	2	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
POP8	YBL018C	Subunit of both RNase MRP and nuclear RNase P	physical	3	2	2	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
RMP1	YLR145W	Subunit of RNase MRP	physical	3	2	2	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
FYV10	YIL097W	Subunit of GID complex	genetic	2	2	2	Negative Genetic, Positive Genetic
POP5	YAL033W	Subunit of both RNase MRP and nuclear RNase P	physical	2	2	2	Affinity Capture-MS, Affinity Capture-Western

Showing 1 to 10 of 331 entries

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