| ARX1 | YDR101C | Nuclear export factor for the ribosomal pre-60S subunit | physical | 17 | 3 | 15 | Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS | 
            
                | MTR2 | YKL186C | mRNA transport regulator | physical | 12 | 4 | 10 | Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Co-crystal Structure, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Reconstituted Complex, Co-crystal Structure, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 10 | 5 | 6 | Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Two-hybrid, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS | 
            
                | YRA1 | YDR381W | Nuclear polyadenylated RNA-binding protein | physical | 9 | 3 | 8 | Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-Western | 
            
                | NUP116 | YMR047C | FG-nucleoporin component of central core of the nuclear pore complex | physical | 9 | 5 | 7 | Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Two-hybrid, Co-purification, Reconstituted Complex, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS | 
            
                | CBC2 | YPL178W | Small subunit of the heterodimeric cap binding complex with Sto1p | physical | 9 | 2 | 7 | Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS | 
            
                | HPR1 | YDR138W | Subunit of THO/TREX complexes | physical | 9 | 5 | 4 | Two-hybrid, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Two-hybrid, Reconstituted Complex, Reconstituted Complex, FRET, Affinity Capture-MS | 
            
                | LSG1 | YGL099W | Putative GTPase involved in 60S ribosomal subunit biogenesis | physical | 8 | 2 | 7 | Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western | 
            
                | SLX9 | YGR081C | Protein required for pre-rRNA processing | genetic | 8 | 4 | 5 | Negative Genetic, Negative Genetic, Synthetic Lethality, Dosage Rescue, Synthetic Rescue, Synthetic Lethality, Negative Genetic, Negative Genetic | 
            
                | NMD3 | YHR170W | Protein involved in nuclear export of the large ribosomal subunit | physical | 7 | 2 | 6 | Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS | 
            
                | NUP100 | YKL068W | FG-nucleoporin component of central core of the nuclear pore complex | physical | 6 | 2 | 6 | Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS | 
            
                | NUP84 | YDL116W | Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) | physical | 6 | 2 | 6 | Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS | 
            
                | NPL3 | YDR432W | RNA-binding protein | physical | 6 | 3 | 4 | Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western | 
            
                | CRM1 | YGR218W | Nuclear export factor, exportin | genetic | 5 | 3 | 5 | Synthetic Growth Defect, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Phenotypic Enhancement | 
            
                | NSP1 | YJL041W | FG-nucleoporin component of central core of the nuclear pore complex | physical | 5 | 4 | 4 | Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex, FRET, Affinity Capture-MS | 
            
                | YRA1 | YDR381W | Nuclear polyadenylated RNA-binding protein | genetic | 5 | 3 | 4 | Negative Genetic, Dosage Rescue, Negative Genetic, Synthetic Rescue, Synthetic Rescue | 
            
                | NUP1 | YOR098C | FG-nucleoporin component of central core of the nuclear pore complex | physical | 5 | 3 | 4 | Reconstituted Complex, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-Western, Reconstituted Complex | 
            
                | MLP2 | YIL149C | Myosin-like protein associated with the nuclear envelope | physical | 5 | 2 | 4 | Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS | 
            
                | SEM1 | YDR363W-A | 19S proteasome regulatory particle lid subcomplex component | genetic | 5 | 2 | 4 | Negative Genetic, Synthetic Lethality, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ARX1 | YDR101C | Nuclear export factor for the ribosomal pre-60S subunit | genetic | 5 | 4 | 3 | Dosage Rescue, Synthetic Growth Defect, Synthetic Lethality, Negative Genetic, Negative Genetic | 
            
                | SAC3 | YDR159W | mRNA export factor | physical | 5 | 3 | 3 | Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP60 | YAR002W | FG-nucleoporin component of central core of the nuclear pore complex | physical | 4 | 2 | 4 | Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP60 | YAR002W | FG-nucleoporin component of central core of the nuclear pore complex | genetic | 4 | 2 | 4 | Synthetic Lethality, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | MLP1 | YKR095W | Myosin-like protein associated with the nuclear envelope | physical | 4 | 2 | 4 | Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP85 | YJR042W | Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) | physical | 4 | 2 | 4 | Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | genetic | 4 | 4 | 3 | Synthetic Growth Defect, Synthetic Lethality, Dosage Rescue, Negative Genetic | 
            
                | DBP5 | YOR046C | Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family | physical | 4 | 3 | 3 | Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western | 
            
                | NMD3 | YHR170W | Protein involved in nuclear export of the large ribosomal subunit | genetic | 4 | 3 | 3 | Dosage Rescue, Synthetic Lethality, Dosage Rescue, Negative Genetic | 
            
                | BUD20 | YLR074C | C2H2-type zinc finger protein required for ribosome assembly | physical | 4 | 2 | 3 | Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS | 
            
                | ECM1 | YAL059W | Pre-ribosomal factor involved in 60S ribosomal protein subunit export | genetic | 4 | 2 | 3 | Negative Genetic, Synthetic Growth Defect, Negative Genetic, Negative Genetic | 
            
                | MTR2 | YKL186C | mRNA transport regulator | genetic | 4 | 2 | 3 | Dosage Rescue, Dosage Rescue, Dosage Rescue, Negative Genetic | 
            
                | THP2 | YHR167W | Subunit of the THO and TREX complexes | genetic | 4 | 2 | 3 | Synthetic Growth Defect, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | POM34 | YLR018C | Subunit of the transmembrane ring of the nuclear pore complex (NPC) | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | POM152 | YMR129W | Glycoprotein subunit of transmembrane ring of nuclear pore complex | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GLE2 | YER107C | RNA export factor associated with the nuclear pore complex (NPC) | genetic | 3 | 3 | 3 | Synthetic Lethality, Negative Genetic, Synthetic Growth Defect | 
            
                | IOC4 | YMR044W | Member of a complex (Isw1b) with Isw1p and Ioc2p | genetic | 3 | 2 | 3 | Negative Genetic, Negative Genetic, Synthetic Rescue | 
            
                | SAC3 | YDR159W | mRNA export factor | genetic | 3 | 2 | 3 | Synthetic Lethality, Negative Genetic, Synthetic Lethality | 
            
                | NUP116 | YMR047C | FG-nucleoporin component of central core of the nuclear pore complex | genetic | 3 | 2 | 3 | Synthetic Lethality, Synthetic Lethality, Negative Genetic | 
            
                | NUP159 | YIL115C | FG-nucleoporin component of central core of the nuclear pore complex | physical | 3 | 2 | 3 | Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS | 
            
                | SUS1 | YBR111W-A | Global transcriptional regulator, component of SAGA, TREX-2 complexes | physical | 3 | 2 | 3 | Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS | 
            
                | SUS1 | YBR111W-A | Global transcriptional regulator, component of SAGA, TREX-2 complexes | genetic | 3 | 2 | 3 | Synthetic Lethality, Synthetic Lethality, Negative Genetic | 
            
                | RPL25 | YOL127W | Ribosomal 60S subunit protein L25 | physical | 3 | 2 | 3 | Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS | 
            
                | RRP6 | YOR001W | Nuclear exosome exonuclease component | genetic | 3 | 2 | 3 | Phenotypic Enhancement, Phenotypic Enhancement, Phenotypic Suppression | 
            
                | PAB1 | YER165W | Poly(A) binding protein | physical | 3 | 3 | 2 | Reconstituted Complex, Co-purification, Affinity Capture-MS | 
            
                | YVH1 | YIR026C | Dual specificity protein phosphatase | physical | 3 | 2 | 2 | Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western | 
            
                | HSC82 | YMR186W | Cytoplasmic chaperone of the Hsp90 family | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GBP2 | YCL011C | Poly(A+) RNA-binding protein | physical | 3 | 1 | 2 | Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western | 
            
                | STO1 | YMR125W | Large subunit of the nuclear mRNA cap-binding protein complex | physical | 3 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP133 | YKR082W | Subunit of Nup84p subcomplex of nuclear pore complex (NPC) | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | HRB1 | YNL004W | Poly(A+) RNA-binding protein | physical | 3 | 1 | 2 | Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western | 
            
                | DBP2 | YNL112W | ATP-dependent RNA helicase of the DEAD-box protein family | genetic | 3 | 3 | 1 | Dosage Lethality, Phenotypic Enhancement, Synthetic Growth Defect | 
            
                | HCR1 | YLR192C | eIF3j component of translation initiation factor 3 (eIF3) | genetic | 2 | 2 | 2 | Negative Genetic, Positive Genetic | 
            
                | HTZ1 | YOL012C | Histone variant H2AZ | genetic | 2 | 2 | 2 | Phenotypic Enhancement, Negative Genetic | 
            
                | YRA2 | YKL214C | Member of the REF (RNA and export factor binding proteins) family | physical | 2 | 2 | 2 | Affinity Capture-Western, Affinity Capture-MS | 
            
                | NUP85 | YJR042W | Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) | genetic | 2 | 2 | 2 | Synthetic Lethality, Synthetic Growth Defect | 
            
                | UBI4 | YLL039C | Ubiquitin | physical | 2 | 2 | 2 | Reconstituted Complex, FRET | 
            
                | NUP57 | YGR119C | FG-nucleoporin component of central core of the nuclear pore complex | physical | 2 | 2 | 2 | Reconstituted Complex, Affinity Capture-MS | 
            
                | SEH1 | YGL100W | Subunit of the Nup84 nuclear pore and SEACAT subcomplexes | physical | 2 | 2 | 2 | Affinity Capture-MS, Affinity Capture-Western | 
            
                | NUP145 | YGL092W | Essential protein with distinct roles in two nuclear pore subcomplexes | physical | 2 | 2 | 2 | Reconstituted Complex, Affinity Capture-MS | 
            
                | RPS6A | YPL090C | Protein component of the small (40S) ribosomal subunit | genetic | 2 | 2 | 2 | Negative Genetic, Synthetic Lethality | 
            
                | MFT1 | YML062C | Subunit of the THO complex | genetic | 2 | 2 | 2 | Synthetic Growth Defect, Negative Genetic | 
            
                | THP1 | YOL072W | Nuclear pore-associated protein | genetic | 2 | 2 | 2 | Synthetic Lethality, Negative Genetic | 
            
                | SWR1 | YDR334W | Swi2/Snf2-related ATPase | genetic | 2 | 2 | 2 | Phenotypic Enhancement, Negative Genetic | 
            
                | SIN3 | YOL004W | Component of both the Rpd3S and Rpd3L histone deacetylase complexes | genetic | 2 | 2 | 2 | Phenotypic Enhancement, Negative Genetic | 
            
                | PHO23 | YNL097C | Component of the Rpd3L histone deacetylase complex | genetic | 2 | 2 | 2 | Phenotypic Enhancement, Negative Genetic | 
            
                | RXT2 | YBR095C | Component of the histone deacetylase Rpd3L complex | genetic | 2 | 2 | 2 | Negative Genetic, Phenotypic Enhancement | 
            
                | SUB2 | YDL084W | Component of the TREX complex required for nuclear mRNA export | genetic | 2 | 2 | 2 | Dosage Growth Defect, Negative Genetic | 
            
                | RNA15 | YGL044C | Component of the cleavage and polyadenylation factor I (CF I) | genetic | 2 | 2 | 2 | Synthetic Lethality, Negative Genetic | 
            
                | RPT2 | YDL007W | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 2 | 2 | 2 | Synthetic Lethality, Negative Genetic | 
            
                | SGF73 | YGL066W | Subunit of DUBm module of SAGA and SLIK | genetic | 2 | 2 | 2 | Negative Genetic, Synthetic Rescue | 
            
                | APQ12 | YIL040W | Nuclear envelope/ER integral membrane protein | genetic | 2 | 2 | 2 | Negative Genetic, Synthetic Growth Defect | 
            
                | ALB1 | YJL122W | Shuttling pre-60S factor | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | KAP95 | YLR347C | Karyopherin beta | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | BUD20 | YLR074C | C2H2-type zinc finger protein required for ribosome assembly | genetic | 2 | 1 | 2 | Synthetic Lethality, Synthetic Lethality | 
            
                | BUD31 | YCR063W | Component of the SF3b subcomplex of the U2 snRNP | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | KAP114 | YGL241W | Karyopherin, responsible for nuclear import of specific proteins | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GLE2 | YER107C | RNA export factor associated with the nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | GLE1 | YDL207W | Cytoplasmic nucleoporin required for polyadenylated mRNA export | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | MCM16 | YPR046W | Component of the Ctf19 complex and the COMA subcomplex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ASM4 | YDL088C | FG-nucleoporin component of central core of nuclear pore complex (NPC) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | NUP120 | YKL057C | Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | YHR127W | YHR127W | Protein of unknown function | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP170 | YBL079W | Subunit of inner ring of nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP170 | YBL079W | Subunit of inner ring of nuclear pore complex (NPC) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | NUP192 | YJL039C | Essential subunit of inner ring of nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP188 | YML103C | Subunit of the inner ring of the nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP157 | YER105C | Subunit of the inner ring of the nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP133 | YKR082W | Subunit of Nup84p subcomplex of nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | NIC96 | YFR002W | Linker nucleoporin component of the nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP82 | YJL061W | Linker nucleoporin component of the nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | POM34 | YLR018C | Subunit of the transmembrane ring of the nuclear pore complex (NPC) | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | SRP1 | YNL189W | Karyopherin alpha homolog | physical | 2 | 1 | 2 | Affinity Capture-MS, Affinity Capture-MS | 
            
                | NUP42 | YDR192C | FG-nucleoporin component of central core of the nuclear pore complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | NUP2 | YLR335W | Nucleoporin involved in nucleocytoplasmic transport | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | RTT103 | YDR289C | Protein involved in transcription termination by RNA polymerase II | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | POT1 | YIL160C | 3-ketoacyl-CoA thiolase with broad chain length specificity | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | PIR5 | YJL160C | Putative protein of unknown function | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | MOG1 | YJR074W | Conserved nuclear protein that interacts with GTP-Gsp1p | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SUB1 | YMR039C | Transcriptional regulator | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SAM37 | YMR060C | Component of the Sorting and Assembly Machinery (SAM) complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ABZ2 | YMR289W | Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ISR1 | YPR106W | Predicted protein kinase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | HPM1 | YIL110W | AdoMet-dependent methyltransferase | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | physical | 2 | 2 | 1 | Affinity Capture-Western, Affinity Capture-RNA | 
            
                | CDC21 | YOR074C | Thymidylate synthase | genetic | 2 | 2 | 1 | Positive Genetic, Negative Genetic | 
            
                | SWD2 | YKL018W | Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex | physical | 2 | 2 | 1 | Affinity Capture-Western, Two-hybrid | 
            
                | SSL1 | YLR005W | Subunit of the core form of RNA polymerase transcription factor TFIIH | genetic | 2 | 2 | 1 | Synthetic Rescue, Phenotypic Suppression | 
            
                | CDC20 | YGL116W | Activator of anaphase-promoting complex/cyclosome (APC/C) | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | NUP57 | YGR119C | FG-nucleoporin component of central core of the nuclear pore complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | XBP1 | YIL101C | Transcriptional repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RSP5 | YER125W | NEDD4 family E3 ubiquitin ligase | regulation | 1 | 1 | 1 | quantitative western immunoblotting evidence | 
            
                | UBP15 | YMR304W | Ubiquitin-specific protease involved in protein deubiquitination | regulation | 1 | 1 | 1 | quantitative western immunoblotting evidence | 
            
                | GUS1 | YGL245W | Glutamyl-tRNA synthetase (GluRS) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK21 | YDR060W | Constituent of 66S pre-ribosomal particles | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LSM1 | YJL124C | Lsm (Like Sm) protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DED1 | YOR204W | ATP-dependent DEAD-box RNA helicase with strand-annealing activity | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC48 | YDL126C | AAA ATPase with protein-unfoldase activity | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CSL4 | YNL232W | Exosome non-catalytic core component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LRP1 | YHR081W | Nuclear exosome-associated nucleic acid binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HPR1 | YDR138W | Subunit of THO/TREX complexes | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | KAP95 | YLR347C | Karyopherin beta | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BCP1 | YDR361C | Essential nuclear chaperone for ribosomal protein Rpl23p | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARC15 | YIL062C | Subunit of the ARP2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARP3 | YJR065C | Essential component of the Arp2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ASC1 | YMR116C | G-protein beta subunit and guanine dissociation inhibitor for Gpa2p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ASC1 | YMR116C | G-protein beta subunit and guanine dissociation inhibitor for Gpa2p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC28 | YBR160W | Cyclin-dependent kinase (CDK) catalytic subunit | genetic | 1 | 1 | 1 | Dosage Lethality | 
            
                | CDC10 | YCR002C | Component of the septin ring, required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC11 | YJR076C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC12 | YHR107C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC3 | YLR314C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATP11 | YNL315C | Molecular chaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CEG1 | YGL130W | Guanylyltransferase involved in mRNA 5' capping | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AVO1 | YOL078W | Component of the membrane-bound TORC2 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CKS1 | YBR135W | Cyclin-dependent protein kinase regulatory subunit and adaptor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | COP1 | YDL145C | Alpha subunit of COPI vesicle coatomer complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DCP1 | YOL149W | Subunit of the Dcp1p-Dcp2p decapping enzyme complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DCP2 | YNL118C | Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ECM1 | YAL059W | Pre-ribosomal factor involved in 60S ribosomal protein subunit export | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ENP1 | YBR247C | Protein associated with U3 and U14 snoRNAs | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | DPB4 | YDR121W | Subunit of DNA pol epsilon and of ISW2 chromatin accessibility complex | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | IOC3 | YFR013W | Subunit of the Isw1a complex | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | ISW1 | YBR245C | ATPase subunit of imitation-switch (ISWI) class chromatin remodelers | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | ISW2 | YOR304W | ATP-dependent DNA translocase involved in chromatin remodeling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRS1 | YDR037W | Lysyl-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LAS17 | YOR181W | Actin assembly factor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | LSM2 | YBL026W | Lsm (Like Sm) protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MCD1 | YDL003W | Essential alpha-kleisin subunit of the cohesin complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CSE2 | YNR010W | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MED11 | YMR112C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COG3 | YER157W | Essential component of the conserved oligomeric Golgi complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DAM1 | YGR113W | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | INO4 | YOL108C | Transcription factor involved in phospholipid synthesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DBP2 | YNL112W | ATP-dependent RNA helicase of the DEAD-box protein family | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | CDC25 | YLR310C | Membrane bound guanine nucleotide exchange factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAM1 | YPL048W | One of two isoforms of the gamma subunit of eEF1B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LTV1 | YKL143W | Subunit of the EGO/GSE complex | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | CAR2 | YLR438W | L-ornithine transaminase (OTAse) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC5 | YMR001C | Polo-like kinase required for mitotic exit | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | GSP1 | YLR293C | Ran GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DYN2 | YDR424C | Cytoplasmic light chain dynein, microtubule motor protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ELM1 | YKL048C | Serine/threonine protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HHO1 | YPL127C | Histone H1, linker histone with roles in meiosis and sporulation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MDH2 | YOL126C | Cytoplasmic malate dehydrogenase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | HAP3 | YBL021C | Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FAL1 | YDR021W | Nucleolar protein required for maturation of 18S rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAS2 | YHR024C | Alpha subunit of the mitochondrial processing protease (MPP) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FUB1 | YCR076C | Proteasome-binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CTR1 | YPR124W | High-affinity copper transporter of plasma membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LOS1 | YKL205W | Nuclear pore protein | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | DBF2 | YGR092W | Ser/Thr kinase involved in transcription and stress response | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATP7 | YKL016C | Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MCM10 | YIL150C | Essential chromatin-associated protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FMN1 | YDR236C | Riboflavin kinase, produces riboflavin monophosphate (FMN) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HSP10 | YOR020C | Mitochondrial matrix co-chaperonin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC34 | YDR054C | Ubiquitin-conjugating enzyme (E2) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ASK1 | YKL052C | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AIM4 | YBR194W | Protein proposed to be associated with the nuclear pore complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | APC11 | YDL008W | Catalytic core subunit, Anaphase-Promoting Complex/Cyclosome (APC/C) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CEP3 | YMR168C | Essential kinetochore protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MCM1 | YMR043W | Transcription factor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CTF8 | YHR191C | Subunit of a complex with Ctf18p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CTK2 | YJL006C | Beta subunit of C-terminal domain kinase I (CTDK-I) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DBP5 | YOR046C | Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | IOC2 | YLR095C | Subunit of the Isw1b complex | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | MAD1 | YGL086W | Coiled-coil protein involved in spindle-assembly checkpoint | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NSP1 | YJL041W | FG-nucleoporin component of central core of the nuclear pore complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MIP6 | YHR015W | Putative RNA-binding protein | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | ROM2 | YLR371W | Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NUP120 | YKL057C | Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRO3 | YER023W | Delta 1-pyrroline-5-carboxylate reductase | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | MEX67 | YPL169C | Poly(A)RNA binding protein involved in nuclear mRNA export | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NUP82 | YJL061W | Linker nucleoporin component of the nuclear pore complex (NPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRP1 | YNL189W | Karyopherin alpha homolog | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | NUP145 | YGL092W | Essential protein with distinct roles in two nuclear pore subcomplexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRT4 | YKL009W | Protein involved in mRNA turnover and ribosome assembly | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | SKM1 | YOL113W | Member of the PAK family of serine/threonine protein kinases | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | YCK1 | YHR135C | Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPT6 | YGL048C | ATPase of the 19S regulatory particle of the 26S proteasome | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | SRO9 | YCL037C | Cytoplasmic RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | PMA1 | YGL008C | Plasma membrane P2-type H+-ATPase | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SDA1 | YGR245C | Protein required for actin organization and passage through Start | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | RIO2 | YNL207W | Essential serine kinase involved in the processing of 20S pre-rRNA | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | RIO2 | YNL207W | Essential serine kinase involved in the processing of 20S pre-rRNA | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | SSB2 | YNL209W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Co-purification | 
            
                | VAM6 | YDL077C | Guanine nucleotide exchange factor for the GTPase Gtr1p | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL24A | YGL031C | Ribosomal 60S subunit protein L24A | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | RPO21 | YDL140C | RNA polymerase II largest subunit B220 | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | RPL16A | YIL133C | Ribosomal 60S subunit protein L16A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS3 | YNL178W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | RPL35A | YDL191W | Ribosomal 60S subunit protein L35A | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | RRP6 | YOR001W | Nuclear exosome exonuclease component | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | NOC4 | YPR144C | Nucleolar protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NUP42 | YDR192C | FG-nucleoporin component of central core of the nuclear pore complex | physical | 1 | 1 | 1 | Reconstituted Complex | 
            
                | NOG1 | YPL093W | Putative GTPase | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | PUB1 | YNL016W | Poly (A)+ RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SEC61 | YLR378C | Conserved ER protein translocation channel | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS0A | YGR214W | Ribosomal 40S subunit protein S0A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS1A | YLR441C | Ribosomal protein of the small (40S) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS2 | YGL123W | Protein component of the small (40S) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS6A | YPL090C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS7A | YOR096W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS8A | YBL072C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS9A | YPL081W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS10A | YOR293W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS12 | YOR369C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS13 | YDR064W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS15 | YOL040C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS15 | YOL040C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | RPS17A | YML024W | Ribosomal protein 51 (rp51) of the small (40s) subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS18A | YDR450W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS19A | YOL121C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS20 | YHL015W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS22A | YJL190C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL26A | YLR344W | Ribosomal 60S subunit protein L26A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS27A | YKL156W | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPL31A | YDL075W | Ribosomal 60S subunit protein L31A | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RPS14A | YCR031C | Protein component of the small (40S) ribosomal subunit | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | POM152 | YMR129W | Glycoprotein subunit of transmembrane ring of nuclear pore complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NUP2 | YLR335W | Nucleoporin involved in nucleocytoplasmic transport | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NUP53 | YMR153W | FG-nucleoporin component of central core of nuclear pore complex (NPC) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | NDC1 | YML031W | Subunit of the transmembrane ring of the nuclear pore complex (NPC) | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | THO2 | YNL139C | Subunit of the THO complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | THO2 | YNL139C | Subunit of the THO complex | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | THP2 | YHR167W | Subunit of the THO and TREX complexes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MFT1 | YML062C | Subunit of the THO complex | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RIF1 | YBR275C | Protein involved in control of DNA replication | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TMA16 | YOR252W | Protein of unknown function that associates with ribosomes | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PRP19 | YLL036C | Splicing factor associated with the spliceosome | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | MTF1 | YMR228W | Mitochondrial RNA polymerase specificity factor | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | ZDS1 | YMR273C | Protein with a role in regulating Swe1p-dependent polarized growth | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | PAT1 | YCR077C | Deadenylation-dependent mRNA-decapping factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIC1 | YLR039C | Protein involved in retrograde transport to the cis-Golgi network | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLX5 | YDL013W | Subunit of the Slx5-Slx8 SUMO-targeted Ub ligase (STUbL) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWD3 | YBR175W | Essential subunit of the COMPASS (Set1C) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SOH1 | YGL127C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS71 | YML041C | Nucleosome-binding component of the SWR1 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MSK1 | YNL073W | Mitochondrial lysine-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TIF35 | YDR429C | eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TRM9 | YML014W | tRNA methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUS1 | YPL212C | tRNA:pseudouridine synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RNY1 | YPL123C | Vacuolar RNase of the T(2) family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAD51 | YER095W | Strand exchange protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLX8 | YER116C | Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NAP1 | YKR048C | Histone chaperone and assembly chaperone for Rps6a/b | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | SAN1 | YDR143C | Ubiquitin-protein ligase | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | YTA7 | YGR270W | Chromatin-binding ATPase that regulates histone gene expression | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | PAN2 | YGL094C | Catalytic subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | PAN3 | YKL025C | Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex | genetic | 1 | 1 | 1 | Synthetic Rescue | 
            
                | SPT6 | YGR116W | Nucleosome remodeling protein | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | RSC2 | YLR357W | Component of the RSC chromatin remodeling complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MFM1 | YPL060W | Mitochondrial inner membrane magnesium transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAD7 | YJR052W | Nucleotide excision repair (NER) protein | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | THP3 | YPR045C | Protein that may have a role in transcription elongation | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | RNA14 | YMR061W | Component of the cleavage and polyadenylation factor I (CF I) | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | NAM7 | YMR080C | ATP-dependent RNA helicase of the SFI superfamily | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | YRB2 | YIL063C | Protein of unknown function | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | SMD2 | YLR275W | Core Sm protein Sm D2 | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC65 | YML105C | Subunit of the signal recognition particle (SRP) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | POP3 | YNL282W | Subunit of both RNase MRP and nuclear RNase P | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PDC2 | YDR081C | Transcription factor for thiamine-regulated genes | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPB7 | YDR404C | RNA polymerase II subunit B16 | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ZPR1 | YGR211W | Essential protein with two zinc fingers | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RGR1 | YLR071C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SMX3 | YPR182W | Core Sm protein Sm F | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YAR029W | YAR029W | Member of DUP240 gene family but contains no transmembrane domains | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SWC5 | YBR231C | Component of the SWR1 complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RNH202 | YDR279W | Ribonuclease H2 subunit | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YGR018C | YGR018C | Protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | NMD2 | YHR077C | Protein involved in the nonsense-mediated mRNA decay (NMD) pathway | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YIA6 | YIL006W | Mitochondrial NAD+ transporter | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SAC1 | YKL212W | Phosphatidylinositol phosphate phosphatase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SND2 | YLR065C | Protein involved in SRP-independent targeting of substrates to the ER | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YLR287C | YLR287C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SIW14 | YNL032W | Inositol phosphatase involved in inositol pyrophosphate metabolism | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MKT1 | YNL085W | Protein similar to nucleases that forms a complex with Pbp1p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YGK3 | YOL128C | Protein kinase related to mammalian GSK-3 glycogen synthase kinases | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC17 | YBL050W | Alpha-SNAP cochaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | REB1 | YBR049C | RNA polymerase I enhancer binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC18 | YBR080C | AAA ATPase and SNARE disassembly chaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NFS1 | YCL017C | Cysteine desulfurase involved in iron-sulfur cluster biogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PDI1 | YCL043C | Protein disulfide isomerase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MPS1 | YDL028C | Dual-specificity kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RRP42 | YDL111C | Exosome non-catalytic core component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RRP45 | YDR280W | Exosome non-catalytic core component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRM1 | YGL097W | Nucleotide exchange factor for Gsp1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MTR3 | YGR158C | Exosome non-catalytic core component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TOR2 | YKL203C | PIK-related protein kinase and rapamycin target | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PBR1 | YNL181W | Putative oxidoreductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPT5 | YOR117W | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPT4 | YOR259C | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPA190 | YOR341W | RNA polymerase I largest subunit A190 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STU1 | YBL034C | Microtubule plus-end-tracking non-motor protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRE7 | YBL041W | Beta 6 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPB5 | YBR154C | RNA polymerase subunit ABC27 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POP7 | YBR167C | Subunit of RNase MRP, nuclear RNase P and telomerase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAF5 | YBR198C | Subunit (90 kDa) of TFIID and SAGA complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | QRI1 | YDL103C | UDP-N-acetylglucosamine pyrophosphorylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NSE4 | YDL105W | Component of the SMC5-SMC6 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TPI1 | YDR050C | Triose phosphate isomerase, abundant glycolytic enzyme | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TSC11 | YER093C | Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAD1 | YFR005C | Conserved zinc-finger domain protein involved in pre-mRNA splicing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPT16 | YGL207W | Subunit of the heterodimeric FACT complex (Spt16p-Pob3p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RHO3 | YIL118W | Non-essential small GTPase of the Rho/Rac family of Ras-like proteins | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NDC80 | YIL144W | Component of the kinetochore-associated Ndc80 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRE3 | YJL001W | Beta 1 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PHS1 | YJL097W | Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP21 | YJL203W | Subunit of the SF3a splicing factor complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SUI2 | YJR007W | Alpha subunit of the translation initiation factor eIF2 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RSC4 | YKR008W | Component of the RSC chromatin remodeling complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NBP1 | YLR457C | Spindle pole body (SPB) component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NSE5 | YML023C | Component of the SMC5-SMC6 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAF7 | YMR227C | TFIID subunit (67 kDa) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRV2 | YNL138W | CAP (cyclase-associated protein) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAT1 | YOR048C | Nuclear 5' to 3' single-stranded RNA exonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PFY1 | YOR122C | Profilin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TFC8 | YPL007C | Subunit of RNA polymerase III transcription initiation factor complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YSA1 | YBR111C | Nudix hydrolase family member with ADP-ribose pyrophosphatase activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YBR219C | YBR219C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAC7 | YDR389W | GTPase activating protein (GAP) for Rho1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SCS2 | YER120W | Integral ER membrane protein, regulates phospholipid metabolism | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YGL036W | YGL036W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UBR1 | YGR184C | E3 ubiquitin ligase (N-recognin) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YJR096W | YJR096W | Xylose and arabinose reductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YJR154W | YJR154W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RMA1 | YKL132C | Putative dihydrofolate synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDH2 | YLL041C | Iron-sulfur protein subunit of succinate dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPZ1 | YML016C | Serine/threonine protein phosphatase Z, isoform of Ppz2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RCH1 | YMR034C | Negative regulator of cytosolic calcium homeostasis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | OCA2 | YNL056W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YDJ1 | YNL064C | Type I HSP40 co-chaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YNL140C | YNL140C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDH5 | YOL071W | Protein required for flavinylation of Sdh1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STI1 | YOR027W | Evolutionarily-conserved Hsp90 cochaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YBR238C | YBR238C | Mitochondrial membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MSS2 | YDL107W | Peripherally bound inner membrane protein of the mitochondrial matrix | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMP3 | YDR276C | Small plasma membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PEP7 | YDR323C | Adaptor protein involved in vesicle-mediated vacuolar protein sorting | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NHX1 | YDR456W | Na+/H+ and K+/H+ exchanger | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPF1 | YEL031W | P-type ATPase, ion transporter of the ER membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS45 | YGL095C | Protein of the Sec1p/Munc-18 family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRPL25 | YGR076C | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PHO86 | YJL117W | Endoplasmic reticulum (ER) resident protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS35 | YJL154C | Endosomal subunit of membrane-associated retromer complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS24 | YKL041W | One of four subunits of the ESCRT-III complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TIS11 | YLR136C | mRNA-binding protein expressed during iron starvation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VAN1 | YML115C | Component of the mannan polymerase I | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPT21 | YMR179W | Protein with a role in transcriptional silencing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLM2 | YNL047C | Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VAC7 | YNL054W | Integral vacuolar membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLA2 | YNL243W | Adaptor protein that links actin to clathrin and endocytosis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MON2 | YNL297C | Protein with a role in endocytosis and vacuole integrity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS27 | YNR006W | Endosomal protein that forms a complex with Hse1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TLG2 | YOL018C | Syntaxin-like t-SNARE | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VAM10 | YOR068C | Protein involved in vacuole morphogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PDE2 | YOR360C | High-affinity cyclic AMP phosphodiesterase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CCZ1 | YBR131W | Subunit of a heterodimeric guanine nucleotide exchange factor (GEF) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HSF1 | YGL073W | Trimeric heat shock transcription factor | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | MCM7 | YBR202W | Component of the Mcm2-7 hexameric helicase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPR1 | YDL035C | Plasma membrane G protein coupled receptor (GPCR) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | LRS4 | YDR439W | Nucleolar protein that forms a complex with Csm1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KAP120 | YPL125W | Karyopherin responsible for the nuclear import of Rpf1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EAF7 | YNL136W | Subunit of the NuA4 histone acetyltransferase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EPO1 | YMR124W | Protein involved in septin-ER tethering | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ALG1 | YBR110W | Mannosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BCH2 | YKR027W | Member of the ChAPs (Chs5p-Arf1p-binding proteins) family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG7 | YHR072W | Lanosterol synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EHT1 | YBR177C | Octanoyl-CoA:ethanol acyltransferase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ASE1 | YOR058C | Mitotic spindle midzone-localized microtubule bundling protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BUD23 | YCR047C | Ribosome biogenesis factor | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | COQ10 | YOL008W | Coenzyme Q (ubiquinone) binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAB4 | YGR277C | Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MEF1 | YLR069C | Mitochondrial elongation factor involved in translational elongation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARV1 | YLR242C | Cortical ER protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI12 | YMR281W | ER membrane protein involved in the second step of GPI anchor assembly | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | GPI19 | YDR437W | Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LIP1 | YMR298W | Ceramide synthase subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COQ2 | YNR041C | Para hydroxybenzoate polyprenyl transferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MDM34 | YGL219C | Mitochondrial component of the ERMES complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COX7 | YMR256C | Subunit VII of cytochrome c oxidase (Complex IV) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDS1 | YBR029C | Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ALG2 | YGL065C | Mannosyltransferase in the N-linked glycosylation pathway | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC8 | YJR057W | Nucleoside monophosphate and nucleoside diphosphate kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | APT2 | YDR441C | Potential adenine phosphoribosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AGC1 | YPR021C | Mitochondrial amino acid transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DFR1 | YOR236W | Dihydrofolate reductase involved in tetrahydrofolate biosynthesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | GPI1 | YGR216C | Membrane protein involved in the synthesis of GlcNAc-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BCD1 | YHR040W | Essential protein required for the accumulation of box C/D snoRNA | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DPA10 | YLR307C-A | Putative mitochondrial protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FAT3 | YKL187C | Protein required for fatty acid uptake | genetic | 1 | 1 | 1 | Negative Genetic |