| FKH1 | YIL131C | Forkhead family transcription factor | regulation | 3 | 2 | 3 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments | 
            
                | ARL1 | YBR164C | Soluble GTPase with a role in regulation of membrane traffic | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ATG16 | YMR159C | Conserved protein involved in autophagy | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SSE2 | YBR169C | Member of Hsp110 subclass of the heat shock protein 70 (HSP70) family | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PTP1 | YDL230W | Phosphotyrosine-specific protein phosphatase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PLN1 | YKR046C | Perilipin, involved in formation and stability of lipid droplets | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | NSG2 | YNL156C | Protein involved in regulation of sterol biosynthesis | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SKI7 | YOR076C | GTP-binding protein that couples the Ski complex and exosome | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | LDB19 | YOR322C | Alpha-arrestin, Ub-ligase adaptor for Rsp5p | physical | 2 | 2 | 2 | Affinity Capture-Western, Two-hybrid | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 2 | 1 | 2 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence | 
            
                | MET32 | YDR253C | Zinc-finger DNA-binding transcription factor | regulation | 2 | 1 | 2 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence | 
            
                | MET4 | YNL103W | Leucine-zipper transcriptional activator | regulation | 2 | 1 | 2 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence | 
            
                | STP1 | YDR463W | Transcription factor | regulation | 2 | 1 | 2 | chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence | 
            
                | ALA1 | YOR335C | Cytoplasmic and mitochondrial alanyl-tRNA synthetase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ATP11 | YNL315C | Molecular chaperone | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 2 | 1 | 2 | Affinity Capture-RNA, Affinity Capture-RNA | 
            
                | LST8 | YNL006W | Protein required for the transport of Gap1p | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | CDC27 | YBL084C | Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ATG21 | YPL100W | Phosphoinositide binding protein | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | VPS64 | YDR200C | Protein required for cytoplasm to vacuole targeting of proteins | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | PHB2 | YGR231C | Subunit of the prohibitin complex (Phb1p-Phb2p) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SNX4 | YJL036W | Sorting nexin | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | MMM1 | YLL006W | ER integral membrane protein, ERMES complex subunit | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | DBF4 | YDR052C | Regulatory subunit of Cdc7p-Dbf4p kinase complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | GAL10 | YBR019C | UDP-glucose-4-epimerase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | DOT1 | YDR440W | Nucleosomal histone H3-Lys79 methylase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | MRP35 | YNL122C | Mitochondrial ribosomal protein of the large subunit | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | SWD1 | YAR003W | Subunit of the COMPASS (Set1C) complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | PAU4 | YLR461W | Member of the seripauperin multigene family | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | PKC1 | YBL105C | Protein serine/threonine kinase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | STE12 | YHR084W | Transcription factor that is activated by a MAPK signaling cascade | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | IXR1 | YKL032C | Transcriptional repressor that regulates hypoxic genes during normoxia | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | MSN2 | YMR037C | Stress-responsive transcriptional activator | regulation | 1 | 1 | 1 | RNA-sequencing evidence | 
            
                | XBP1 | YIL101C | Transcriptional repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP1 | YML007W | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SIN4 | YNL236W | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | ABF1 | YKL112W | DNA binding protein with possible chromatin-reorganizing activity | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | TFC7 | YOR110W | RNA pol III transcription initiation factor complex (TFIIIC) subunit | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | HSF1 | YGL073W | Trimeric heat shock transcription factor | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | CYC8 | YBR112C | General transcriptional co-repressor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | MED4 | YOR174W | Subunit of the RNA polymerase II mediator complex | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | ZAP1 | YJL056C | Zinc-regulated transcription factor | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | MSN4 | YKL062W | Stress-responsive transcriptional activator | regulation | 1 | 1 | 1 | RNA-sequencing evidence | 
            
                | SPT3 | YDR392W | Subunit of the SAGA and SAGA-like transcriptional regulatory complexes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | YAP5 | YIR018W | Basic leucine zipper (bZIP) iron-sensing transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | UME6 | YDR207C | Rpd3L histone deacetylase complex subunit | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | RPD3 | YNL330C | Histone deacetylase, component of both the Rpd3S and Rpd3L complexes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | WTM1 | YOR230W | Transcriptional modulator | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SIN3 | YOL004W | Component of both the Rpd3S and Rpd3L histone deacetylase complexes | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | HAS1 | YMR290C | ATP-dependent RNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CWC23 | YGL128C | Component of a complex containing Cef1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRE29 | YER038C | Subunit of the SMC5-SMC6 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MES1 | YGR264C | Methionyl-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DED1 | YOR204W | ATP-dependent DEAD-box RNA helicase with strand-annealing activity | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC48 | YDL126C | AAA ATPase with protein-unfoldase activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DIS3 | YOL021C | Exosome core complex catalytic subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ABD1 | YBR236C | Methyltransferase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BET3 | YKR068C | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC10 | YCR002C | Component of the septin ring, required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC11 | YJR076C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DBP10 | YDL031W | Putative ATP-dependent RNA helicase of the DEAD-box protein family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COX5A | YNL052W | Subunit Va of cytochrome c oxidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DCP1 | YOL149W | Subunit of the Dcp1p-Dcp2p decapping enzyme complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | EMG1 | YLR186W | Methyltransferase for rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG13 | YML126C | 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FRS1 | YLR060W | Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KGD2 | YDR148C | Dihydrolipoyl transsuccinylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LCB2 | YDR062W | Component of serine palmitoyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GLT1 | YDL171C | NAD(+)-dependent glutamate synthase (GOGAT) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COG3 | YER157W | Essential component of the conserved oligomeric Golgi complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRM1 | YOR201C | Ribose methyltransferase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MRPL8 | YJL063C | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | HTZ1 | YOL012C | Histone variant H2AZ | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AFG2 | YLR397C | ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GIM3 | YNL153C | Subunit of the heterohexameric cochaperone prefoldin complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DOA4 | YDR069C | Ubiquitin hydrolase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | HSP82 | YPL240C | Hsp90 chaperone | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | ANP1 | YEL036C | Subunit of the alpha-1,6 mannosyltransferase complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CCT8 | YJL008C | Subunit of the cytosolic chaperonin Cct ring complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HSE1 | YHL002W | Subunit of the endosomal Vps27p-Hse1p complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FLC2 | YAL053W | Putative calcium channel involved in calcium release under hypotonic | physical | 1 | 1 | 1 | PCA | 
            
                | HEK2 | YBL032W | RNA binding protein involved in asymmetric localization of ASH1 mRNA | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CDC13 | YDL220C | Single stranded DNA-binding protein found at TG1-3 telomere G-tails | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LSP1 | YPL004C | Eisosome core component | physical | 1 | 1 | 1 | PCA | 
            
                | ADH2 | YMR303C | Glucose-repressible alcohol dehydrogenase II | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DIP5 | YPL265W | Dicarboxylic amino acid permease | physical | 1 | 1 | 1 | PCA | 
            
                | ERG27 | YLR100W | 3-keto sterol reductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DOP1 | YDR141C | Protein involved in vesicular transport at trans-Golgi network (TGN) | physical | 1 | 1 | 1 | PCA | 
            
                | GPA2 | YER020W | Nucleotide binding alpha subunit of the heterotrimeric G protein | physical | 1 | 1 | 1 | PCA | 
            
                | CDC4 | YFL009W | F-box protein required for both the G1/S and G2/M phase transitions | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HIR1 | YBL008W | Subunit of the HIR complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | INA1 | YLR413W | Protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | ARE1 | YCR048W | Acyl-CoA:sterol acyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRI1 | YNL308C | Essential nucleolar protein required for 40S ribosome biogenesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | LHS1 | YKL073W | Molecular chaperone of the endoplasmic reticulum lumen | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HXT5 | YHR096C | Hexose transporter with moderate affinity for glucose | physical | 1 | 1 | 1 | PCA | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DUT1 | YBR252W | Deoxyuridine triphosphate diphosphatase (dUTPase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC7 | YDL017W | S/T kinase and catalytic subunit of DDK (Dbf4-dependent kinase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG11 | YHR007C | Lanosterol 14-alpha-demethylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MMS22 | YLR320W | Subunit of E3 ubiquitin ligase complex involved in replication repair | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DHR2 | YKL078W | Predominantly nucleolar DEAH-box ATP-dependent RNA helicase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ESS1 | YJR017C | Peptidylprolyl-cis/trans-isomerase (PPIase) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | ATP5 | YDR298C | Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DAD2 | YKR083C | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CLN3 | YAL040C | G1 cyclin involved in cell cycle progression | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FUI1 | YBL042C | High affinity uridine permease, localizes to the plasma membrane | physical | 1 | 1 | 1 | PCA | 
            
                | GPI16 | YHR188C | Subunit of the glycosylphosphatidylinositol transamidase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ASK1 | YKL052C | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MDY2 | YOL111C | Protein involved in inserting tail-anchored proteins into ER membranes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COG4 | YPR105C | Essential component of the conserved oligomeric Golgi complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GRC3 | YLL035W | Polynucleotide kinase present on rDNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC21 | YOR074C | Thymidylate synthase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BRE5 | YNR051C | Ubiquitin protease cofactor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IES4 | YOR189W | Component of the INO80 chromatiin remodeling complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MCM1 | YMR043W | Transcription factor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BUR6 | YER159C | Subunit of a heterodimeric NC2 transcription regulator complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BFR1 | YOR198C | Component of mRNP complexes associated with polyribosomes | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | JNM1 | YMR294W | Component of the yeast dynactin complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CSG2 | YBR036C | Endoplasmic reticulum membrane protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FCP1 | YMR277W | Carboxy-terminal domain (CTD) phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC19 | YAL038W | Pyruvate kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MID2 | YLR332W | O-glycosylated plasma membrane protein | physical | 1 | 1 | 1 | PCA | 
            
                | CHS5 | YLR330W | Component of the exomer complex | physical | 1 | 1 | 1 | PCA | 
            
                | DYS1 | YHR068W | Deoxyhypusine synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EMP70 | YLR083C | Protein with a role in cellular adhesion and filamentous growth | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BTS1 | YPL069C | Geranylgeranyl diphosphate synthase (GGPPS) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HNM1 | YGL077C | Plasma membrane transporter for choline, ethanolamine, and carnitine | physical | 1 | 1 | 1 | PCA | 
            
                | CSF1 | YLR087C | Protein with structural similarity to lipid transport protein Vps13p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CUE4 | YML101C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI2 | YPL076W | Protein involved in the synthesis of GlcNAc-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KEX1 | YGL203C | Cell death protease essential for hypochlorite-induced apoptosis | physical | 1 | 1 | 1 | PCA | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MTC1 | YJL123C | Protein of unknown function that may interact with ribosomes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FIG2 | YCR089W | Cell wall adhesin, expressed specifically during mating | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FTR1 | YER145C | High affinity iron permease | physical | 1 | 1 | 1 | PCA | 
            
                | ANY1 | YMR010W | Protein involved in phospholipid flippase function | physical | 1 | 1 | 1 | PCA | 
            
                | LDB19 | YOR322C | Alpha-arrestin, Ub-ligase adaptor for Rsp5p | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | ERP3 | YDL018C | Protein with similarity to Emp24p and Erv25p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GSH1 | YJL101C | Gamma glutamylcysteine synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI12 | YMR281W | ER membrane protein involved in the second step of GPI anchor assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IRC4 | YDR540C | Protein similar to bacterial secreted DfsB proteins | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EOS1 | YNL080C | Protein involved in N-glycosylation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI19 | YDR437W | Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | FMP45 | YDL222C | Integral membrane protein localized to mitochondria | physical | 1 | 1 | 1 | PCA | 
            
                | AST2 | YER101C | Lipid raft associated protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HXT2 | YMR011W | High-affinity glucose transporter of the major facilitator superfamily | physical | 1 | 1 | 1 | PCA | 
            
                | HXT1 | YHR094C | Low-affinity glucose transporter of the major facilitator superfamily | physical | 1 | 1 | 1 | PCA | 
            
                | LDB18 | YLL049W | Component of the dynactin complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YBL029C-A | YBL029C-A | Protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | RFS1 | YBR052C | Protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | RIM1 | YCR028C-A | ssDNA-binding protein essential for mitochondrial genome maintenance | physical | 1 | 1 | 1 | PCA | 
            
                | SNQ2 | YDR011W | Plasma membrane ATP-binding cassette (ABC) transporter | physical | 1 | 1 | 1 | PCA | 
            
                | PST2 | YDR032C | FMN-dependent NAD(P)H:quinone oxidoreductase | physical | 1 | 1 | 1 | PCA | 
            
                | PLM2 | YDR501W | Putative transcription factor, contains Forkhead Associated domain | physical | 1 | 1 | 1 | PCA | 
            
                | SDS23 | YGL056C | Protein involved in cell separation during budding | physical | 1 | 1 | 1 | PCA | 
            
                | YGL108C | YGL108C | Protein of unknown function, predicted to be palmitoylated | physical | 1 | 1 | 1 | PCA | 
            
                | MUP1 | YGR055W | High affinity methionine permease | physical | 1 | 1 | 1 | PCA | 
            
                | SNA3 | YJL151C | Protein involved in efficient MVB sorting of proteins to the vacuole | physical | 1 | 1 | 1 | PCA | 
            
                | VHT1 | YGR065C | High-affinity plasma membrane H+-biotin (vitamin H) symporter | physical | 1 | 1 | 1 | PCA | 
            
                | YOR1 | YGR281W | Plasma membrane ATP-binding cassette (ABC) transporter | physical | 1 | 1 | 1 | PCA | 
            
                | PPZ1 | YML016C | Serine/threonine protein phosphatase Z, isoform of Ppz2p | physical | 1 | 1 | 1 | PCA | 
            
                | PDR12 | YPL058C | Plasma membrane ATP-binding cassette (ABC) transporter | physical | 1 | 1 | 1 | PCA | 
            
                | TCB3 | YML072C | Cortical ER protein involved in ER-plasma membrane tethering | physical | 1 | 1 | 1 | PCA | 
            
                | SLM1 | YIL105C | Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p | physical | 1 | 1 | 1 | PCA | 
            
                | TPO3 | YPR156C | Polyamine transporter of the major facilitator superfamily | physical | 1 | 1 | 1 | PCA | 
            
                | TPO1 | YLL028W | Polyamine transporter of the major facilitator superfamily | physical | 1 | 1 | 1 | PCA | 
            
                | SFK1 | YKL051W | Protein that regulates phospholipid asymmetry at plasma membrane | physical | 1 | 1 | 1 | PCA | 
            
                | WSC3 | YOL105C | Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway | physical | 1 | 1 | 1 | PCA | 
            
                | OSH7 | YHR001W | Oxysterol-binding phosphatidylserine transferase | physical | 1 | 1 | 1 | PCA | 
            
                | TPO4 | YOR273C | Polyamine transporter of the major facilitator superfamily | physical | 1 | 1 | 1 | PCA | 
            
                | TPO2 | YGR138C | Polyamine transporter of the major facilitator superfamily | physical | 1 | 1 | 1 | PCA | 
            
                | YGR130C | YGR130C | Component of the eisosome with unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | YLR326W | YLR326W | Putative protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | WSC2 | YNL283C | Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway | physical | 1 | 1 | 1 | PCA | 
            
                | QDR2 | YIL121W | Plasma membrane transporter of the major facilitator superfamily | physical | 1 | 1 | 1 | PCA | 
            
                | WHI3 | YNL197C | RNA binding protein that modulates mRNA stability | physical | 1 | 1 | 1 | Protein-RNA | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | YAR028W | YAR028W | Putative integral membrane protein | physical | 1 | 1 | 1 | PCA | 
            
                | TVS1 | YCR061W | Protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | SRO9 | YCL037C | Cytoplasmic RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | SSB1 | YDL229W | Cytoplasmic ATPase that is a ribosome-associated molecular chaperone | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SSA2 | YLL024C | HSP70 family ATP-binding protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | SSA1 | YAL005C | ATPase involved in protein folding and NLS-directed nuclear transport | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | RSP5 | YER125W | NEDD4 family E3 ubiquitin ligase | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | RSP5 | YER125W | NEDD4 family E3 ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUF2 | YPR042C | PUF family mRNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | RIO1 | YOR119C | Serine kinase involved in cell cycle regulation and rDNA integrity | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | SSY1 | YDR160W | Component of the SPS plasma membrane amino acid sensor system | genetic | 1 | 1 | 1 | Dosage Rescue | 
            
                | SEO1 | YAL067C | Putative permease | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | PGI1 | YBR196C | Glycolytic enzyme phosphoglucose isomerase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS4B | YHR203C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMC3 | YJL074C | Subunit of the multiprotein cohesin complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UTR1 | YJR049C | ATP-NADH kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | TOR2 | YKL203C | PIK-related protein kinase and rapamycin target | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TVP18 | YMR071C | Integral membrane protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPC24 | YMR117C | Component of the kinetochore-associated Ndc80 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NRD1 | YNL251C | RNA-binding subunit of Nrd1 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP2 | YNL061W | rRNA m5C methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RLP7 | YNL002C | Nucleolar protein similar to large ribosomal subunit L7 proteins | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TOR1 | YJR066W | PIK-related protein kinase and rapamycin target | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | SAM1 | YLR180W | S-adenosylmethionine synthetase | genetic | 1 | 1 | 1 | Dosage Growth Defect | 
            
                | TAF1 | YGR274C | TFIID subunit, involved in RNA pol II transcription initiation | genetic | 1 | 1 | 1 | Synthetic Lethality | 
            
                | TTI1 | YKL033W | Subunit of the ASTRA complex, involved in chromatin remodeling | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | POL1 | YNL102W | Catalytic subunit of the DNA polymerase I alpha-primase complex | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | RSC6 | YCR052W | Component of the RSC chromatin remodeling complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | WBP1 | YEL002C | Beta subunit of the oligosaccharyl transferase glycoprotein complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VPS9 | YML097C | Guanine nucleotide exchange factor (GEF) and ubiquitin receptor | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SLA2 | YNL243W | Adaptor protein that links actin to clathrin and endocytosis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | TIM22 | YDL217C | Essential core component of mitochondrial TIM22 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAF12 | YDR145W | Subunit (61/68 kDa) of TFIID and SAGA complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NSE3 | YDR288W | Component of the SMC5-SMC6 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POL5 | YEL055C | Protein involved in 60S assembly and pre-40S AFs recycling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NTF2 | YER009W | Nuclear envelope protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPB4 | YFL002C | Putative ATP-dependent RNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TIM54 | YJL054W | Component of the mitochondrial TIM22 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPC25 | YKL144C | RNA polymerase III subunit C25 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPP0 | YLR340W | Conserved ribosomal protein P0 of the ribosomal stalk | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NSE5 | YML023C | Component of the SMC5-SMC6 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NUP116 | YMR047C | FG-nucleoporin component of central core of the nuclear pore complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIO2 | YNL207W | Essential serine kinase involved in the processing of 20S pre-rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP2 | YNR011C | RNA-dependent DExD/H-box ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | WRS1 | YOL097C | Cytoplasmic tryptophanyl-tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAF3 | YPL011C | TFIID subunit (47 kDa) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC16 | YPL085W | COPII vesicle coat protein required for ER transport vesicle budding | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRP72 | YPL210C | Core component of the signal recognition particle (SRP) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAH18 | YPR048W | Conserved NAPDH-dependent diflavin reductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | QRI1 | YDL103C | UDP-N-acetylglucosamine pyrophosphorylase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRP101 | YDR292C | Signal recognition particle (SRP) receptor alpha subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNM1 | YDR478W | Ribonuclease MRP complex subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UTP13 | YLR222C | Nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RSE1 | YML049C | Protein involved in pre-mRNA splicing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOG2 | YNR053C | Putative GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SUA7 | YPR086W | Transcription factor TFIIB | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YAL064W | YAL064W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SIF2 | YBR103W | WD40 repeat-containing subunit of Set3C histone deacetylase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC66 | YBR171W | Non-essential subunit of Sec63 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TMA64 | YDR117C | Protein of unknown function that associates with ribosomes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PEX10 | YDR265W | Peroxisomal membrane E3 ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PIB1 | YDR313C | RING-type ubiquitin ligase of the endosomal and vacuolar membranes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWR1 | YDR334W | Swi2/Snf2-related ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS72 | YDR485C | Htz1p-binding component of the SWR1 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ZRG8 | YER033C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UBC6 | YER100W | Ubiquitin-conjugating enzyme involved in ERAD | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TMN3 | YER113C | Protein with a role in cellular adhesion and filamentous growth | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PAU5 | YFL020C | Member of the seripauperin multigene family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RMR1 | YGL250W | Protein required for meiotic recombination and gene conversion | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL19B | YBL027W | Ribosomal 60S subunit protein L19B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UBX2 | YML013W | Bridging factor involved in ER-associated protein degradation (ERAD) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPC1 | YJR010C-A | Subunit of the signal peptidase complex (SPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TMH11 | YJR085C | Mitochondrial protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NUP133 | YKR082W | Subunit of Nup84p subcomplex of nuclear pore complex (NPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UBP11 | YKR098C | Ubiquitin-specific protease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PSR2 | YLR019W | Putative plasma membrane phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PEX17 | YNL214W | Membrane peroxin of the peroxisomal importomer complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPG1 | YNR032W | Serine protein phosphatase involved in formation of FAR complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPL039W | YPL039W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VMA13 | YPR036W | Subunit H of the V1 peripheral membrane domain of V-ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPR084W | YPR084W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPR108W-A | YPR108W-A | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPH21 | YDL134C | Catalytic subunit of protein phosphatase 2A, PP2A | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | OMS1 | YDR316W | Protein integral to the mitochondrial membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP8 | YHR165C | Component of U4/U6-U5 snRNP complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PEP8 | YJL053W | Vacuolar protein component of the retromer | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMA1 | YGL008C | Plasma membrane P2-type H+-ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ITR1 | YDR497C | Myo-inositol transporter | physical | 1 | 1 | 1 | PCA | 
            
                | MEP3 | YPR138C | Ammonium permease of high capacity and low affinity | physical | 1 | 1 | 1 | PCA | 
            
                | GPX2 | YBR244W | Phospholipid hydroperoxide glutathione peroxidase | physical | 1 | 1 | 1 | PCA | 
            
                | ALG14 | YBR070C | Component of UDP-GlcNAc transferase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FLC1 | YPL221W | Flavin adenine dinucleotide transporter | physical | 1 | 1 | 1 | PCA | 
            
                | DUR3 | YHL016C | Plasma membrane transporter for both urea and polyamines | physical | 1 | 1 | 1 | PCA | 
            
                | MEP1 | YGR121C | Ammonium permease | physical | 1 | 1 | 1 | PCA | 
            
                | DYN3 | YMR299C | Dynein light intermediate chain (LIC) | physical | 1 | 1 | 1 | PCA | 
            
                | MSC3 | YLR219W | Protein of unknown function | physical | 1 | 1 | 1 | PCA | 
            
                | LYP1 | YNL268W | Lysine permease | physical | 1 | 1 | 1 | PCA | 
            
                | GPI13 | YLL031C | ER membrane localized phosphoryltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MSN1 | YOL116W | Transcriptional activator | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FCY22 | YER060W-A | Putative purine-cytosine permease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MPC3 | YGR243W | Highly conserved subunit of the mitochondrial pyruvate carrier (MPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC1 | YDR182W | Putative mannose-ethanolamine phosphate phosphodiesterase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DIT2 | YDR402C | N-formyltyrosine oxidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI11 | YDR302W | ER membrane protein involved in a late step of GPI anchor assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ADF1 | YCL058W-A | Transcriptional repressor encoded by the FYV5 antisense strand | genetic | 1 | 1 | 1 | Positive Genetic |