GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
RPO21	YDL140C	RNA polymerase II largest subunit B220	physical	13	6	11	Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Protein-peptide, Affinity Capture-Western, Far Western, Protein-peptide, Co-crystal Structure, Affinity Capture-Western, Far Western, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS
SPN1	YPR133C	Protein involved in RNA polymerase II transcription	physical	11	4	7	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Co-crystal Structure, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS
SPN1	YPR133C	Protein involved in RNA polymerase II transcription	genetic	7	5	4	Synthetic Growth Defect, Synthetic Lethality, Dosage Rescue, Phenotypic Suppression, Negative Genetic, Synthetic Lethality, Synthetic Growth Defect
RPB3	YIL021W	RNA polymerase II third largest subunit B44	physical	5	3	5	Affinity Capture-MS, Affinity Capture-Western, Co-localization, Affinity Capture-MS, Affinity Capture-Western
CKA1	YIL035C	Alpha catalytic subunit of casein kinase 2 (CK2)	physical	4	3	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Biochemical Activity
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	physical	4	3	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Biochemical Activity
HHT1	YBR010W	Histone H3	physical	4	3	3	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Protein-peptide
SPT5	YML010W	Spt4p/5p (DSIF) transcription elongation factor complex subunit	physical	4	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
RPO21	YDL140C	RNA polymerase II largest subunit B220	genetic	4	3	2	Synthetic Growth Defect, Synthetic Lethality, Synthetic Rescue, Synthetic Growth Defect
SET2	YJL168C	Histone methyltransferase with a role in transcriptional elongation	genetic	3	3	3	Negative Genetic, Synthetic Rescue, Phenotypic Suppression
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	genetic	3	1	3	Synthetic Rescue, Synthetic Rescue, Synthetic Rescue
SPT2	YER161C	Protein involved in negative regulation of transcription	physical	3	2	2	Co-localization, Affinity Capture-Western, Affinity Capture-Western
JHD2	YJR119C	JmjC domain family histone demethylase	genetic	3	2	2	Synthetic Rescue, Dosage Growth Defect, Synthetic Rescue
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	2	2	2	Affinity Capture-MS, Co-fractionation
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	genetic	2	2	2	Synthetic Growth Defect, Negative Genetic
SGV1	YPR161C	Cyclin (Bur2p)-dependent protein kinase	genetic	2	2	2	Synthetic Growth Defect, Negative Genetic
CKB1	YGL019W	Beta regulatory subunit of casein kinase 2 (CK2)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SPT16	YGL207W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SNF2	YOR290C	Catalytic subunit of the SWI/SNF chromatin remodeling complex	genetic	2	1	2	Synthetic Rescue, Synthetic Rescue
SPT4	YGR063C	Spt4p/5p (DSIF) transcription elongation factor complex subunit	genetic	2	1	2	Synthetic Lethality, Synthetic Lethality
GAL10	YBR019C	UDP-glucose-4-epimerase	genetic	2	1	2	Synthetic Rescue, Synthetic Rescue
HTZ1	YOL012C	Histone variant H2AZ	genetic	2	2	1	Synthetic Growth Defect, Phenotypic Suppression
NHP6B	YBR089C-A	High-mobility group (HMG) protein	genetic	2	2	1	Synthetic Growth Defect, Synthetic Lethality
NHP6A	YPR052C	High-mobility group (HMG) protein	genetic	2	2	1	Synthetic Growth Defect, Synthetic Lethality
HRQ1	YDR291W	3'-5' DNA helicase of the conserved RecQ family	genetic	2	2	1	Positive Genetic, Negative Genetic
ACT1	YFL039C	Actin, structural protein in cytoskeleton	genetic	2	1	1	Synthetic Haploinsufficiency, Synthetic Haploinsufficiency
CTK1	YKL139W	Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I)	physical	2	1	1	Affinity Capture-Western, Affinity Capture-Western
SPT4	YGR063C	Spt4p/5p (DSIF) transcription elongation factor complex subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BUR6	YER159C	Subunit of a heterodimeric NC2 transcription regulator complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
STP1	YDR463W	Transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SUA7	YPR086W	Transcription factor TFIIB	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARO3	YDR035W	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARO4	YBR249C	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PGK1	YCR012W	3-phosphoglycerate kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADI1	YMR009W	Acireductone dioxygenease involved in methionine salvage pathway	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ACO1	YLR304C	Aconitase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HNT1	YDL125C	Adenosine 5'-monophosphoramidase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADO1	YJR105W	Adenosine kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SAL1	YNL083W	ADP/ATP transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AGX1	YFL030W	Alanine:glyoxylate aminotransferase (AGT)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADH1	YOL086C	Alcohol dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GRE3	YHR104W	Aldose reductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TMC1	YOR052C	AN1-type zinc finger protein, effector of proteotoxic stress response	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC123	YLR215C	Assembly factor for the eIF2 translation initiation factor complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
KAR2	YJL034W	ATPase involved in protein import into the ER	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPT2	YDL007W	ATPase of the 19S regulatory particle of the 26S proteasome	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PUP3	YER094C	Beta 3 subunit of the 20S proteasome	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SUI3	YPL237W	Beta subunit of the translation initiation factor eIF2	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GSC2	YGR032W	Catalytic subunit of 1,3-beta-glucan synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIR1	YER011W	Cell wall mannoprotein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CCW12	YLR110C	Cell wall mannoprotein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RTT105	YER104W	Chaperone for Replication Protein A complex (RPA)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AHA1	YDR214W	Co-chaperone that binds Hsp82p and activates its ATPase activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
EIS1	YMR031C	Component of the eisosome required for proper eisosome assembly	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SAM35	YHR083W	Component of the sorting and assembly machinery (SAM) complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SGO1	YOR073W	Component of the spindle checkpoint	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ALG14	YBR070C	Component of UDP-GlcNAc transferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ERV14	YGL054C	COPII-coated vesicle protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DDI3	YFL061W	Cyanamide hydratase that detoxifies cyanamide	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COA2	YPL189C-A	Cytochrome oxidase assembly factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ILS1	YBL076C	Cytoplasmic isoleucine-tRNA synthetase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PTC4	YBR125C	Cytoplasmic type 2C protein phosphatase (PP2C)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HCA4	YJL033W	DEAD box RNA helicase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP104	YLL026W	Disaggregase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SMF2	YHR050W	Divalent metal ion transporter involved in manganese homeostasis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RDH54	YBR073W	DNA-dependent ATPase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TAH11	YJR046W	DNA replication licensing factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PSH1	YOL054W	E3 ubiquitin ligase targeting centromere-binding protein Cse4p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
END3	YNL084C	EH domain-containing protein involved in endocytosis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COS6	YGR295C	Endosomal protein involved in turnover of plasma membrane proteins	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPT35	YHR105W	Endosomal protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OST2	YOR103C	Epsilon subunit of the oligosaccharyltransferase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIM44	YIL022W	Essential component of the TIM23 complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIM17	YJL143W	Essential component of the TIM23 complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YJU2	YKL095W	Essential protein required for pre-mRNA splicing	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ZPR1	YGR211W	Essential protein with two zinc fingers	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RIO2	YNL207W	Essential serine kinase involved in the processing of 20S pre-rRNA	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
STI1	YOR027W	Evolutionarily-conserved Hsp90 cochaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
EXO84	YBR102C	Exocyst subunit with dual roles in exocytosis and spliceosome assembly	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HOF1	YMR032W	F-BAR protein that regulates actin cytoskeleton organization	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UFO1	YML088W	F-box receptor protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COQ6	YGR255C	Flavin-dependent monooxygenase involved in ubiquinone biosynthesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SDH1	YKL148C	Flavoprotein subunit of succinate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GLK1	YCL040W	Glucokinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GNA1	YFL017C	Glucosamine-6-phosphate acetyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GAD1	YMR250W	Glutamate decarboxylase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GFA1	YKL104C	Glutamine-fructose-6-phosphate amidotransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SGT2	YOR007C	Glutamine-rich cytoplasmic cochaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COY1	YKL179C	Golgi membrane protein with similarity to mammalian CASP	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IRA2	YOL081W	GTPase-activating protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GYP8	YFL027C	GTPase-activating protein for yeast Rab family members	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CIN2	YPL241C	GTPase-activating protein (GAP) for Cin4p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SSA4	YER103W	Heat shock protein that is highly induced upon stress	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HXK1	YFR053C	Hexokinase isoenzyme 1	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MSP1	YGR028W	Highly-conserved N-terminally anchored AAA-ATPase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HIS5	YIL116W	Histidinol-phosphate aminotransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
APJ1	YNL077W	Hsp40 chaperone with a role in SUMO-mediated protein degradation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SSC1	YJR045C	Hsp70 family ATPase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FES1	YBR101C	Hsp70 (Ssa1p) nucleotide exchange factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP82	YPL240C	Hsp90 chaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TSL1	YML100W	Large subunit of trehalose 6-phosphate synthase/phosphatase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VPS55	YJR044C	Late endosomal protein involved in late endosome to vacuole transport	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VPS13	YLL040C	Lipid transport protein involved in prospore membrane morphogenesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CAR2	YLR438W	L-ornithine transaminase (OTAse)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HXT3	YDR345C	Low affinity glucose transporter of the major facilitator superfamily	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AMF1	YOR378W	Low affinity NH4+ transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TPM1	YNL079C	Major isoform of tropomyosin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SED1	YDR077W	Major stress-induced structural GPI-cell wall glycoprotein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OCH1	YGL038C	Mannosyltransferase of the cis-Golgi apparatus	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LCB5	YLR260W	Minor sphingoid long-chain base kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CEM1	YER061C	Mitochondrial beta-keto-acyl synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GGC1	YDL198C	Mitochondrial GTP/GDP transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AAC1	YMR056C	Mitochondrial inner membrane ADP/ATP translocator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP10	YOR020C	Mitochondrial matrix co-chaperonin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SDH6	YDR379C-A	Mitochondrial protein involved in assembly of succinate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MCO10	YOR020W-A	Mitochondrial protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MNP1	YGL068W	Mitochondrial ribosomal protein of the large subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RSM26	YJR101W	Mitochondrial ribosomal protein of the small subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SLI1	YGR212W	N-acetyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARA2	YMR041C	NAD-dependent arabinose dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GPD1	YDL022W	NAD-dependent glycerol-3-phosphate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NDI1	YML120C	NADH:ubiquinone oxidoreductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NAT4	YMR069W	N alpha-acetyl-transferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PIN3	YPR154W	Negative regulator of actin nucleation-promoting factor activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PNC1	YGL037C	Nicotinamidase that converts nicotinamide to nicotinic acid	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LIN1	YHR156C	Non-essential component of U5 snRNP	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IES5	YER092W	Non-essential INO80 chromatin remodeling complex subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ETT1	YOR051C	Nuclear protein that inhibits replication of Brome mosaic virus	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YAR1	YPL239W	Nucleocytoplasmic shuttling assembly chaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VPS71	YML041C	Nucleosome-binding component of the SWR1 complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PIR1	YKL164C	O-glycosylated protein required for cell wall stability	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP78	YDR258C	Oligomeric mitochondrial matrix chaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP150	YJL159W	O-mannosylated heat shock protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GTO3	YMR251W	Omega class glutathione transferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARG3	YJL088W	Ornithine carbamoyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CPR6	YLR216C	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MAY24	YPR153W	Peripheral ER membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PEX25	YPL112C	Peripheral peroxisomal membrane peroxin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PEX27	YOR193W	Peripheral peroxisomal membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARO10	YDR380W	Phenylpyruvate decarboxylase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UPS1	YLR193C	Phosphatidic acid transfer protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDR5	YOR153W	Plasma membrane ATP-binding cassette (ABC) transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MKS1	YNL076W	Pleiotropic negative transcriptional regulator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TPO4	YOR273C	Polyamine transporter of the major facilitator superfamily	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR034W-B	YDR034W-B	Predicted tail-anchored plasma membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR018C	YDR018C	Probable membrane protein with three predicted transmembrane domains	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS21B	YJL136C	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ENT5	YDR153C	Protein containing an N-terminal epsin-like domain	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPF1	YHR088W	Protein involved in assembly and export of the large ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SDS23	YGL056C	Protein involved in cell separation during budding	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
REC104	YHR157W	Protein involved in early stages of meiotic recombination	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MCD4	YKL165C	Protein involved in GPI anchor synthesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RIM8	YGL045W	Protein involved in proteolytic activation of Rim101p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YER137C	YER137C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ZRG8	YER033C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MSC3	YLR219W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR085C-A	YBR085C-A	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TVS1	YCR061W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR108C	YLR108C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DIA1	YMR316W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FAR3	YMR052W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPR148C	YPR148C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RFS1	YBR052C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHI9	YHR029C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AIM26	YKL037W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HOR7	YMR251W-A	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BSC5	YNR069C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHR138C	YHR138C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
URN1	YPR152C	Protein of unknown function containing WW and FF domains	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR071W	YBR071W	Protein of unknown function found in the cytoplasm and bud neck	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YET2	YMR040W	Protein of unknown function that may interact with ribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBL028C	YBL028C	Protein of unknown function that may interact with ribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YJL213W	YJL213W	Protein of unknown function that may interact with ribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TSR3	YOR006C	Protein required for 20S pre-rRNA processing	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COS111	YBR203W	Protein required for antifungal drug ciclopirox olamine resistance	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SUE1	YPR151C	Protein required for degradation of unstable forms of cytochrome c	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ISA1	YLL027W	Protein required for maturation of mitochondrial [4Fe-4S] proteins	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LST8	YNL006W	Protein required for the transport of Gap1p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LAG2	YOL025W	Protein that negatively regulates the SCF E3-ubiquitin ligase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RAD57	YDR004W	Protein that stimulates strand exchange	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OPI10	YOL032W	Protein with a possible role in phospholipid biosynthesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ESBP6	YNL125C	Protein with similarity to monocarboxylate permeases	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PMP2	YEL017C-A	Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OPT1	YJL212C	Proton-coupled oligopeptide transporter of the plasma membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GCV2	YMR189W	P subunit of the mitochondrial glycine decarboxylase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ENA1	YDR040C	P-type ATPase sodium pump	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADP1	YCR011C	Putative ATP-dependent permease of the ABC transporter family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RTS3	YGR161C	Putative component of the protein phosphatase type 2A complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DPI8	YJL133C-A	Putative mitochondrial protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MTL1	YGR023W	Putative plasma membrane sensor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR315W-A	YMR315W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR034C-A	YDR034C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YNR068C	YNR068C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR389W	YOR389W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR210C	YGR210C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YML053C	YML053C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR262W	YDR262W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR003W-A	YDR003W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIR018C-A	YIR018C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR072C-A	YBR072C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR182C-A	YBR182C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YML003W	YML003W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHL008C	YHL008C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YJR079W	YJR079W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHR054C	YHR054C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR268C	YOR268C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR209C	YMR209C	Putative S-adenosylmethionine-dependent methyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PAC1	YOR269W	Regulator of dynein, involved in intracellular transport	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
REG2	YBR050C	Regulatory subunit of the Glc7p type-1 protein phosphatase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR034C-D	YDR034C-D	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GIC2	YDR309C	Rho-family GTPase interacting protein and Cdc42p effector	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BAG7	YOR134W	Rho GTPase activating protein (RhoGAP)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RNR2	YJL026W	Ribonucleotide-diphosphate reductase (RNR), small subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL16A	YIL133C	Ribosomal 60S subunit protein L16A	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RKM4	YDR257C	Ribosomal lysine methyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PEX2	YJL210W	RING-finger peroxin and E3 ubiquitin ligase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CET1	YPL228W	RNA 5'-triphosphatase involved in mRNA 5' capping	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RIE1	YGR250C	RNA binding protein and negative regulator of START	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPA14	YDR156W	RNA polymerase I subunit A14	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YAK1	YJL141C	Serine-threonine protein kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP42	YDR171W	Small heat shock protein (sHSP) with chaperone activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CUR1	YPR158W	Sorting factor, central regulator of spatial protein quality control	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADY4	YLR227C	Structural component of the meiotic outer plaque	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GID7	YCL039W	Subunit of GID Complex that binds directly to central component Vid30p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IDH2	YOR136W	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DCP1	YOL149W	Subunit of the Dcp1p-Dcp2p decapping enzyme complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CLU1	YMR012W	Subunit of the eukaryotic translation initiation factor 3 (eIF3)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ASI3	YNL008C	Subunit of the inner nuclear membrane Asi ubiquitin ligase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SOM1	YEL059C-A	Subunit of the mitochondrial inner membrane peptidase (IMP)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SRB4	YER022W	Subunit of the RNA polymerase II mediator complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YKU70	YMR284W	Subunit of the telomeric Ku complex (Yku70p-Yku80p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NFI1	YOR156C	SUMO E3 ligase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ERO1	YML130C	Thiol oxidase required for oxidative protein folding in the ER	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MBF1	YOR298C-A	Transcriptional coactivator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDR8	YLR266C	Transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TKL1	YPR074C	Transketolase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TEF2	YBR118W	Translational elongation factor EF-1 alpha	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HYP2	YEL034W	Translation elongation factor eIF-5A	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SUP35	YDR172W	Translation termination factor eRF3	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
POM33	YLL023C	Transmembrane nucleoporin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TPI1	YDR050C	Triose phosphate isomerase, abundant glycolytic enzyme	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COA4	YLR218C	Twin Cx(9)C protein involved in cytochrome c oxidase organization	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDJ1	YNL064C	Type I HSP40 co-chaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UBI4	YLL039C	Ubiquitin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UBP9	YER098W	Ubiquitin-specific protease that cleaves ubiquitin-protein fusions	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ROQ1	YJL144W	Ub-ligase substrate-specificity factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CCC1	YLR220W	Vacuolar Fe2+/Mn2+ transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PRB1	YEL060C	Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VPS62	YGR141W	Vacuolar protein sorting (VPS) protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AVT3	YKL146W	Vacuolar transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BTN2	YGR142W	v-SNARE binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
XKS1	YGR194C	Xylulokinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	regulation	1	1	1	protein kinase assay evidence
CKA1	YIL035C	Alpha catalytic subunit of casein kinase 2 (CK2)	regulation	1	1	1	co-immunoprecipitation evidence
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	regulation	1	1	1	co-immunoprecipitation evidence
CDC73	YLR418C	Component of the Paf1p complex	genetic	1	1	1	Synthetic Lethality
CTR9	YOL145C	Component of the Paf1p complex involved in transcription elongation	genetic	1	1	1	Synthetic Lethality
PAF1	YBR279W	Component of the Paf1p complex involved in transcription elongation	physical	1	1	1	Affinity Capture-Western
PAF1	YBR279W	Component of the Paf1p complex involved in transcription elongation	genetic	1	1	1	Synthetic Lethality
PSF1	YDR013W	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	genetic	1	1	1	Negative Genetic
PSF2	YJL072C	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	genetic	1	1	1	Negative Genetic
RTF1	YGL244W	Subunit of RNAPII-associated chromatin remodeling Paf1 complex	genetic	1	1	1	Synthetic Growth Defect
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	genetic	1	1	1	Phenotypic Suppression
CKB2	YOR039W	Beta' regulatory subunit of casein kinase 2 (CK2)	physical	1	1	1	Reconstituted Complex
RPB2	YOR151C	RNA polymerase II second largest subunit B150	physical	1	1	1	Affinity Capture-MS
RPB2	YOR151C	RNA polymerase II second largest subunit B150	genetic	1	1	1	Synthetic Growth Defect
NSE1	YLR007W	Component of the SMC5-SMC6 complex	genetic	1	1	1	Negative Genetic
ESA1	YOR244W	Catalytic subunit of the histone acetyltransferase complex (NuA4)	physical	1	1	1	Affinity Capture-MS
NSE4	YDL105W	Component of the SMC5-SMC6 complex	genetic	1	1	1	Negative Genetic
MRT4	YKL009W	Protein involved in mRNA turnover and ribosome assembly	genetic	1	1	1	Synthetic Growth Defect
SAP190	YKR028W	Protein that forms a complex with the Sit4p protein phosphatase	genetic	1	1	1	Negative Genetic
RPS4B	YHR203C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
NPL3	YDR432W	RNA-binding protein	physical	1	1	1	Affinity Capture-MS
RPA34	YJL148W	RNA polymerase I subunit A34.5	genetic	1	1	1	Positive Genetic
RPC82	YPR190C	RNA polymerase III subunit C82	physical	1	1	1	Affinity Capture-MS
RPA43	YOR340C	RNA polymerase I subunit A43	physical	1	1	1	Two-hybrid
RPA43	YOR340C	RNA polymerase I subunit A43	genetic	1	1	1	Synthetic Growth Defect
ARP7	YPR034W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	genetic	1	1	1	Negative Genetic
RSC4	YKR008W	Component of the RSC chromatin remodeling complex	genetic	1	1	1	Negative Genetic
RGR1	YLR071C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
DST1	YGL043W	General transcription elongation factor TFIIS	genetic	1	1	1	Synthetic Growth Defect
ARX1	YDR101C	Nuclear export factor for the ribosomal pre-60S subunit	genetic	1	1	1	Synthetic Growth Defect
SPT16	YGL207W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	genetic	1	1	1	Phenotypic Enhancement
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	Affinity Capture-Western
ABD1	YBR236C	Methyltransferase	physical	1	1	1	Affinity Capture-MS
ABD1	YBR236C	Methyltransferase	genetic	1	1	1	Negative Genetic
CDC45	YLR103C	DNA replication initiation factor	genetic	1	1	1	Negative Genetic
CLP1	YOR250C	Component of the cleavage and polyadenylation factor I (CF I)	genetic	1	1	1	Negative Genetic
CTK1	YKL139W	Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I)	genetic	1	1	1	Negative Genetic
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	physical	1	1	1	Two-hybrid
ESP1	YGR098C	Separase/separin, a caspase-like cysteine protease	physical	1	1	1	Affinity Capture-MS
HHF1	YBR009C	Histone H4	physical	1	1	1	Protein-peptide
HHF1	YBR009C	Histone H4	genetic	1	1	1	Phenotypic Suppression
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	physical	1	1	1	Affinity Capture-RNA
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	physical	1	1	1	Affinity Capture-RNA
ARB1	YER036C	ATPase of the ATP-binding cassette (ABC) family	genetic	1	1	1	Synthetic Lethality
MCM5	YLR274W	Component of the Mcm2-7 hexameric helicase complex	genetic	1	1	1	Negative Genetic
COG3	YER157W	Essential component of the conserved oligomeric Golgi complex	genetic	1	1	1	Negative Genetic
NHP10	YDL002C	Non-essential INO80 chromatin remodeling complex subunit	genetic	1	1	1	Negative Genetic
AFG2	YLR397C	ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex	genetic	1	1	1	Negative Genetic
PCF11	YDR228C	mRNA 3' end processing factor	genetic	1	1	1	Negative Genetic
POL12	YBL035C	B subunit of DNA polymerase alpha-primase complex	genetic	1	1	1	Negative Genetic
POP2	YNR052C	Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation	genetic	1	1	1	Synthetic Rescue
HSP82	YPL240C	Hsp90 chaperone	physical	1	1	1	Affinity Capture-MS
PTC4	YBR125C	Cytoplasmic type 2C protein phosphatase (PP2C)	genetic	1	1	1	Positive Genetic
POL2	YNL262W	Catalytic subunit of DNA polymerase (II) epsilon	physical	1	1	1	Affinity Capture-Western
MED8	YBR193C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-MS
RPB11	YOL005C	RNA polymerase II subunit B12.5	physical	1	1	1	Affinity Capture-MS
PPH21	YDL134C	Catalytic subunit of protein phosphatase 2A, PP2A	genetic	1	1	1	Positive Genetic
NUP85	YJR042W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
SET3	YKR029C	Defining member of the SET3 histone deacetylase complex	genetic	1	1	1	Negative Genetic
SNF5	YBR289W	Subunit of the SWI/SNF chromatin remodeling complex	genetic	1	1	1	Synthetic Rescue
BUR2	YLR226W	Cyclin for the Sgv1p (Bur1p) protein kinase	genetic	1	1	1	Synthetic Lethality
PTC1	YDL006W	Type 2C protein phosphatase (PP2C)	genetic	1	1	1	Positive Genetic
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	genetic	1	1	1	Negative Genetic
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	physical	1	1	1	Affinity Capture-RNA
SPT5	YML010W	Spt4p/5p (DSIF) transcription elongation factor complex subunit	genetic	1	1	1	Synthetic Lethality
RRD2	YPL152W	Peptidyl-prolyl cis/trans-isomerase	genetic	1	1	1	Positive Genetic
MCM2	YBL023C	Protein involved in DNA replication	genetic	1	1	1	Negative Genetic
RPT4	YOR259C	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	1	1	1	Negative Genetic
BRE2	YLR015W	Subunit of COMPASS (Set1C) complex	genetic	1	1	1	Negative Genetic
PUF3	YLL013C	Protein of the mitochondrial outer surface	physical	1	1	1	Affinity Capture-RNA
EDC3	YEL015W	Non-essential conserved protein with a role in mRNA decapping	physical	1	1	1	Two-hybrid
ADH2	YMR303C	Glucose-repressible alcohol dehydrogenase II	physical	1	1	1	Affinity Capture-MS
HSP104	YLL026W	Disaggregase	physical	1	1	1	Affinity Capture-MS
SGS1	YMR190C	RecQ family nucleolar DNA helicase	genetic	1	1	1	Negative Genetic
PBA1	YLR199C	Protein involved in 20S proteasome assembly	physical	1	1	1	Affinity Capture-MS
CDC15	YAR019C	Hippo-like kinase of the Mitotic Exit Network	genetic	1	1	1	Negative Genetic
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	physical	1	1	1	Biochemical Activity
HHT1	YBR010W	Histone H3	genetic	1	1	1	Phenotypic Suppression
RAS2	YNL098C	GTP-binding protein	genetic	1	1	1	Synthetic Growth Defect
DPB11	YJL090C	DNA replication initiation protein	genetic	1	1	1	Negative Genetic
KSS1	YGR040W	Mitogen-activated protein kinase (MAPK)	physical	1	1	1	Biochemical Activity
RAD53	YPL153C	DNA damage response kinase	genetic	1	1	1	Synthetic Growth Defect
MMS22	YLR320W	Subunit of E3 ubiquitin ligase complex involved in replication repair	physical	1	1	1	Affinity Capture-MS
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	genetic	1	1	1	Negative Genetic
SPC24	YMR117C	Component of the kinetochore-associated Ndc80 complex	genetic	1	1	1	Negative Genetic
MCM10	YIL150C	Essential chromatin-associated protein	genetic	1	1	1	Negative Genetic
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	genetic	1	1	1	Negative Genetic
MOB2	YFL034C-B	Activator of Cbk1p kinase	genetic	1	1	1	Negative Genetic
NDC80	YIL144W	Component of the kinetochore-associated Ndc80 complex	genetic	1	1	1	Negative Genetic
CAK1	YFL029C	Cyclin-dependent kinase-activating kinase	genetic	1	1	1	Negative Genetic
GPN2	YOR262W	Putative GTPase with a specific role in RNA pol II and polIII biogenes	genetic	1	1	1	Positive Genetic
CEP3	YMR168C	Essential kinetochore protein	genetic	1	1	1	Negative Genetic
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RTG1	YOL067C	Transcription factor (bHLH) involved in interorganelle communication	genetic	1	1	1	Negative Genetic
CET1	YPL228W	RNA 5'-triphosphatase involved in mRNA 5' capping	genetic	1	1	1	Negative Genetic
SNF6	YHL025W	Subunit of the SWI/SNF chromatin remodeling complex	genetic	1	1	1	Synthetic Rescue
HPC2	YBR215W	Subunit of the HIR complex	genetic	1	1	1	Negative Genetic
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	physical	1	1	1	Affinity Capture-MS
RPS11B	YBR048W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
CSE4	YKL049C	Centromeric histone H3-like protein	physical	1	1	1	Affinity Capture-MS
CTF8	YHR191C	Subunit of a complex with Ctf18p	genetic	1	1	1	Positive Genetic
MAD1	YGL086W	Coiled-coil protein involved in spindle-assembly checkpoint	genetic	1	1	1	Synthetic Lethality
MEX67	YPL169C	Poly(A)RNA binding protein involved in nuclear mRNA export	genetic	1	1	1	Dosage Rescue
SEC1	YDR164C	Sm-like protein involved in docking and fusion of exocytic vesicles	genetic	1	1	1	Negative Genetic
SEC20	YDR498C	Membrane glycoprotein v-SNARE	genetic	1	1	1	Negative Genetic
SEC61	YLR378C	Conserved ER protein translocation channel	genetic	1	1	1	Negative Genetic
PEP8	YJL053W	Vacuolar protein component of the retromer	genetic	1	1	1	Negative Genetic
CCZ1	YBR131W	Subunit of a heterodimeric guanine nucleotide exchange factor (GEF)	genetic	1	1	1	Negative Genetic
SEC16	YPL085W	COPII vesicle coat protein required for ER transport vesicle budding	genetic	1	1	1	Negative Genetic
MPT5	YGL178W	mRNA-binding protein of the PUF family	physical	1	1	1	Affinity Capture-RNA
SML1	YML058W	Ribonucleotide reductase inhibitor	physical	1	1	1	Affinity Capture-MS
MCA1	YOR197W	Ca2+-dependent cysteine protease	genetic	1	1	1	Synthetic Growth Defect
RPL25	YOL127W	Ribosomal 60S subunit protein L25	physical	1	1	1	Affinity Capture-MS
HHT2	YNL031C	Histone H3	physical	1	1	1	Affinity Capture-Western
MNN11	YJL183W	Subunit of a Golgi mannosyltransferase complex	genetic	1	1	1	Positive Genetic
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
HAC1	YFL031W	Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog)	genetic	1	1	1	Positive Genetic
DBP6	YNR038W	Essential protein involved in ribosome biogenesis	genetic	1	1	1	Synthetic Lethality
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	physical	1	1	1	Affinity Capture-MS
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	physical	1	1	1	Affinity Capture-MS
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	genetic	1	1	1	Negative Genetic
ORC6	YHR118C	Subunit of the origin recognition complex (ORC)	genetic	1	1	1	Negative Genetic
PUF4	YGL014W	Member of the PUF protein family	physical	1	1	1	Affinity Capture-RNA
BRL1	YHR036W	Essential nuclear envelope/ER integral membrane protein	genetic	1	1	1	Negative Genetic
ORC4	YPR162C	Subunit of the origin recognition complex (ORC)	genetic	1	1	1	Negative Genetic
ELF1	YKL160W	Transcription elongation factor with a conserved zinc finger domain	genetic	1	1	1	Synthetic Lethality
SAC1	YKL212W	Phosphatidylinositol phosphate phosphatase	genetic	1	1	1	Positive Genetic
SFB2	YNL049C	Component of the Sec23p-Sfb2p heterodimer of the COPII vesicle coat	physical	1	1	1	Affinity Capture-MS
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	physical	1	1	1	Affinity Capture-RNA
MUB1	YMR100W	MYND domain-containing protein	genetic	1	1	1	Negative Genetic
RPS9A	YPL081W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
PSA1	YDL055C	GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)	genetic	1	1	1	Synthetic Lethality
PRI2	YKL045W	Subunit of DNA primase	genetic	1	1	1	Negative Genetic
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
NUP192	YJL039C	Essential subunit of inner ring of nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
SLD5	YDR489W	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	genetic	1	1	1	Negative Genetic
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS19A	YOL121C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
APJ1	YNL077W	Hsp40 chaperone with a role in SUMO-mediated protein degradation	physical	1	1	1	Affinity Capture-MS
NMT1	YLR195C	N-myristoyl transferase	genetic	1	1	1	Negative Genetic
RTT106	YNL206C	Histone chaperone	genetic	1	1	1	Synthetic Growth Defect
RSA1	YPL193W	Protein involved in the assembly of 60S ribosomal subunits	genetic	1	1	1	Synthetic Growth Defect
ALG14	YBR070C	Component of UDP-GlcNAc transferase	genetic	1	1	1	Negative Genetic
SCS7	YMR272C	Sphingolipid alpha-hydroxylase	genetic	1	1	1	Negative Genetic
HER2	YMR293C	Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex	genetic	1	1	1	Negative Genetic
MOT3	YMR070W	Transcriptional repressor, activator	genetic	1	1	1	Dosage Rescue
ATG15	YCR068W	Phospholipase	genetic	1	1	1	Negative Genetic
CDC8	YJR057W	Nucleoside monophosphate and nucleoside diphosphate kinase	genetic	1	1	1	Negative Genetic
APS3	YJL024C	Small subunit of the clathrin-associated adaptor complex AP-3	genetic	1	1	1	Negative Genetic
TPK2	YPL203W	cAMP-dependent protein kinase catalytic subunit	physical	1	1	1	Affinity Capture-MS
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	1	1	1	Affinity Capture-MS
STH1	YIL126W	ATPase component of the RSC chromatin remodeling complex	genetic	1	1	1	Synthetic Growth Defect
VID30	YGL227W	Central component of GID Complex, involved in FBPase degradation	genetic	1	1	1	Positive Genetic
THR1	YHR025W	Homoserine kinase	genetic	1	1	1	Positive Genetic
YME1	YPR024W	Catalytic subunit of i-AAA protease complex	genetic	1	1	1	Negative Genetic
TAF5	YBR198C	Subunit (90 kDa) of TFIID and SAGA complexes	genetic	1	1	1	Positive Genetic
YHC1	YLR298C	Component of the U1 snRNP complex required for pre-mRNA splicing	genetic	1	1	1	Negative Genetic
TAP42	YMR028W	Essential protein involved in the TOR signaling pathway	genetic	1	1	1	Negative Genetic
UTP15	YMR093W	Nucleolar protein	genetic	1	1	1	Negative Genetic
TIF6	YPR016C	Constituent of 66S pre-ribosomal particles	genetic	1	1	1	Negative Genetic
VPS41	YDR080W	Subunit of the HOPS endocytic tethering complex	genetic	1	1	1	Negative Genetic
VPS35	YJL154C	Endosomal subunit of membrane-associated retromer complex	genetic	1	1	1	Negative Genetic
YJR011C	YJR011C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
VPS38	YLR360W	Part of a Vps34p phosphatidylinositol 3-kinase complex	genetic	1	1	1	Negative Genetic
VPS9	YML097C	Guanine nucleotide exchange factor (GEF) and ubiquitin receptor	genetic	1	1	1	Negative Genetic
VAM3	YOR106W	Syntaxin-like vacuolar t-SNARE	genetic	1	1	1	Negative Genetic
ZUO1	YGR285C	Ribosome-associated chaperone	genetic	1	1	1	Synthetic Growth Defect
SWR1	YDR334W	Swi2/Snf2-related ATPase	genetic	1	1	1	Phenotypic Suppression
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS29A	YLR388W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
RKR1	YMR247C	RING domain E3 ubiquitin ligase	genetic	1	1	1	Synthetic Growth Defect