| ARL1 | YBR164C | Soluble GTPase with a role in regulation of membrane traffic | genetic | 12 | 3 | 8 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Synthetic Growth Defect, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GET3 | YDL100C | Guanine nucleotide exchange factor for Gpa1p | genetic | 11 | 2 | 7 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | COG6 | YNL041C | Component of the conserved oligomeric Golgi complex | genetic | 11 | 1 | 7 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ERV14 | YGL054C | COPII-coated vesicle protein | genetic | 10 | 2 | 6 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Phenotypic Suppression, Phenotypic Suppression, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | COG5 | YNL051W | Component of the conserved oligomeric Golgi complex | genetic | 10 | 1 | 6 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RIC1 | YLR039C | Protein involved in retrograde transport to the cis-Golgi network | genetic | 9 | 2 | 7 | Synthetic Lethality, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ARL3 | YPL051W | ARF-like small GTPase of the RAS superfamily | genetic | 9 | 2 | 7 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Synthetic Growth Defect, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RUD3 | YOR216C | Golgi matrix protein | genetic | 9 | 3 | 6 | Negative Genetic, Negative Genetic, Synthetic Growth Defect, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | COG8 | YML071C | Component of the conserved oligomeric Golgi complex | genetic | 9 | 2 | 6 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ILM1 | YJR118C | Protein of unknown function | genetic | 9 | 2 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Phenotypic Suppression, Phenotypic Suppression, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GAS1 | YMR307W | Beta-1,3-glucanosyltransferase required for cell wall assembly | genetic | 9 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | TLG1 | YDR468C | Essential t-SNARE that mediates fusion of vesicles with the late Golgi | physical | 8 | 3 | 6 | Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Two-hybrid, Co-purification, Affinity Capture-Western | 
            
                | YPT6 | YLR262C | Rab family GTPase | genetic | 8 | 3 | 6 | Synthetic Lethality, Synthetic Growth Defect, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SYS1 | YJL004C | Integral membrane protein of the Golgi | genetic | 8 | 2 | 6 | Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SFT2 | YBL102W | Tetra-spanning membrane protein found mostly in the late Golgi | genetic | 8 | 1 | 6 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PKR1 | YMR123W | V-ATPase assembly factor | genetic | 8 | 2 | 5 | Negative Genetic, Negative Genetic, Synthetic Growth Defect, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | TRS85 | YDR108W | Component of transport protein particle (TRAPP) complex III | genetic | 8 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GET1 | YGL020C | Subunit of the GET complex | genetic | 8 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GET2 | YER083C | Subunit of the GET complex | genetic | 8 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | COG7 | YGL005C | Component of the conserved oligomeric Golgi complex | genetic | 8 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | VPS45 | YGL095C | Protein of the Sec1p/Munc-18 family | physical | 7 | 4 | 7 | Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Two-hybrid, Reconstituted Complex, Two-hybrid, Reconstituted Complex | 
            
                | ERG3 | YLR056W | C-5 sterol desaturase | genetic | 7 | 1 | 6 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | DRS2 | YAL026C | Trans-golgi network aminophospholipid translocase (flippase) | genetic | 7 | 2 | 5 | Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RGP1 | YDR137W | Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) | genetic | 7 | 2 | 5 | Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PHO86 | YJL117W | Endoplasmic reticulum (ER) resident protein | genetic | 7 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SCS7 | YMR272C | Sphingolipid alpha-hydroxylase | genetic | 7 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RAV1 | YJR033C | Subunit of RAVE complex (Rav1p, Rav2p, Skp1p) | genetic | 6 | 3 | 5 | Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Synthetic Growth Defect, Negative Genetic | 
            
                | TRS20 | YBR254C | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 6 | 2 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Synthetic Lethality, Negative Genetic, Negative Genetic | 
            
                | VPS27 | YNR006W | Endosomal protein that forms a complex with Hse1p | genetic | 6 | 2 | 5 | Phenotypic Enhancement, Phenotypic Enhancement, Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic | 
            
                | SAC7 | YDR389W | GTPase activating protein (GAP) for Rho1p | genetic | 6 | 2 | 5 | Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RET2 | YFR051C | Delta subunit of the coatomer complex (COPI) | genetic | 6 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PIL1 | YGR086C | Eisosome core component | genetic | 6 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SEC27 | YGL137W | Essential beta'-coat protein of the COPI coatomer | genetic | 6 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | TPM1 | YNL079C | Major isoform of tropomyosin | genetic | 6 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SRO7 | YPR032W | Effector of Rab GTPase Sec4p | genetic | 6 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ERG25 | YGR060W | C-4 methyl sterol oxidase | genetic | 6 | 1 | 5 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SEC14 | YMR079W | Phosphatidylinositol/phosphatidylcholine transfer protein | genetic | 6 | 4 | 4 | Synthetic Lethality, Synthetic Growth Defect, Phenotypic Enhancement, Synthetic Growth Defect, Synthetic Growth Defect, Negative Genetic | 
            
                | UBP3 | YER151C | Ubiquitin-specific protease that cleaves Ub-protein fusions | genetic | 6 | 2 | 4 | Synthetic Growth Defect, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SUR1 | YPL057C | Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit | genetic | 6 | 2 | 4 | Synthetic Growth Defect, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RER1 | YCL001W | Protein involved in retention of membrane proteins | genetic | 6 | 2 | 4 | Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic | 
            
                | GDA1 | YEL042W | Guanosine diphosphatase located in the Golgi | genetic | 6 | 2 | 4 | Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic | 
            
                | SUM1 | YDR310C | Transcriptional repressor that regulates middle-sporulation genes | genetic | 6 | 2 | 4 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | TRS65 | YGR166W | Component of transport protein particle (TRAPP) complex II | genetic | 6 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ARF1 | YDL192W | ADP-ribosylation factor | genetic | 6 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ARV1 | YLR242C | Cortical ER protein | genetic | 6 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RCE1 | YMR274C | Type II CAAX prenyl protease | genetic | 6 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ORM2 | YLR350W | Protein that mediates sphingolipid homeostasis | genetic | 6 | 2 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Positive Genetic, Positive Genetic, Negative Genetic | 
            
                | AIM44 | YPL158C | Regulator of Cdc42p and Rho1p | genetic | 6 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | NBP2 | YDR162C | Protein involved in the HOG (high osmolarity glycerol) pathway | genetic | 5 | 2 | 4 | Synthetic Growth Defect, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SNX4 | YJL036W | Sorting nexin | genetic | 5 | 2 | 4 | Negative Genetic, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PMR1 | YGL167C | High affinity Ca2+/Mn2+ P-type ATPase | genetic | 5 | 2 | 4 | Negative Genetic, Negative Genetic, Synthetic Growth Defect, Negative Genetic, Negative Genetic | 
            
                | GOS1 | YHL031C | v-SNARE protein involved in Golgi transport | genetic | 5 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | HAC1 | YFL031W | Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog) | genetic | 5 | 1 | 4 | Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic | 
            
                | SWA2 | YDR320C | Auxilin-like protein involved in vesicular transport | genetic | 5 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GUP1 | YGL084C | Plasma membrane protein involved in remodeling GPI anchors | genetic | 5 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | VPS54 | YDR027C | Component of the GARP (Golgi-associated retrograde protein) complex | physical | 5 | 3 | 3 | Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Two-hybrid | 
            
                | VPS9 | YML097C | Guanine nucleotide exchange factor (GEF) and ubiquitin receptor | genetic | 5 | 2 | 3 | Positive Genetic, Positive Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Positive Genetic | 
            
                | VPS1 | YKR001C | Dynamin-like GTPase required for vacuolar sorting | genetic | 5 | 2 | 3 | Phenotypic Suppression, Phenotypic Suppression, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | CPR7 | YJR032W | Peptidyl-prolyl cis-trans isomerase (cyclophilin) | genetic | 5 | 2 | 3 | Synthetic Growth Defect, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | KEX2 | YNL238W | Kexin, a subtilisin-like protease (proprotein convertase) | genetic | 5 | 2 | 3 | Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic | 
            
                | BTS1 | YPL069C | Geranylgeranyl diphosphate synthase (GGPPS) | genetic | 5 | 2 | 3 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PER1 | YCR044C | Protein of the endoplasmic reticulum | genetic | 5 | 2 | 3 | Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic | 
            
                | CSF1 | YLR087C | Protein with structural similarity to lipid transport protein Vps13p | genetic | 5 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SEC28 | YIL076W | Epsilon-COP subunit of the coatomer | genetic | 5 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SAC1 | YKL212W | Phosphatidylinositol phosphate phosphatase | genetic | 5 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | OPI3 | YJR073C | Methylene-fatty-acyl-phospholipid synthase | genetic | 5 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | VTI1 | YMR197C | Protein involved in cis-Golgi membrane traffic | physical | 4 | 2 | 4 | Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western | 
            
                | VMA1 | YDL185W | Subunit A of the V1 peripheral membrane domain of V-ATPase | genetic | 4 | 2 | 4 | Synthetic Lethality, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | CSG2 | YBR036C | Endoplasmic reticulum membrane protein | genetic | 4 | 1 | 4 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | VMA21 | YGR105W | Integral membrane protein required for V-ATPase function | genetic | 4 | 2 | 3 | Negative Genetic, Negative Genetic, Synthetic Growth Defect, Negative Genetic | 
            
                | PEP8 | YJL053W | Vacuolar protein component of the retromer | genetic | 4 | 2 | 3 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic | 
            
                | KRE1 | YNL322C | Cell wall glycoprotein involved in beta-glucan assembly | genetic | 4 | 2 | 3 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic | 
            
                | APL5 | YPL195W | Delta adaptin-like subunit of the clathrin associated protein complex | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PTC1 | YDL006W | Type 2C protein phosphatase (PP2C) | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | VPS8 | YAL002W | Membrane-binding component of the CORVET complex | genetic | 4 | 1 | 3 | Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic | 
            
                | USO1 | YDL058W | Essential protein involved in vesicle-mediated ER to Golgi transport | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | OST3 | YOR085W | Gamma subunit of the oligosaccharyltransferase complex of the ER lumen | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | MNN11 | YJL183W | Subunit of a Golgi mannosyltransferase complex | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SUR7 | YML052W | Plasma membrane protein, component of eisosomes | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | LAS21 | YJL062W | Mannose-ethanolamine phosphotransferase | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SPF1 | YEL031W | P-type ATPase, ion transporter of the ER membrane | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | IRS4 | YKR019C | EH domain-containing protein | genetic | 4 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | BRE5 | YNR051C | Ubiquitin protease cofactor | genetic | 4 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic | 
            
                | SRN2 | YLR119W | Component of the ESCRT-I complex | genetic | 4 | 2 | 2 | Positive Genetic, Positive Genetic, Positive Genetic, Negative Genetic | 
            
                | VPH2 | YKL119C | Integral membrane protein required for V-ATPase function | genetic | 4 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | RAV2 | YDR202C | Subunit of RAVE complex (Rav1p, Rav2p, Skp1p) | genetic | 4 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | MNN10 | YDR245W | Subunit of a Golgi mannosyltransferase complex | genetic | 3 | 2 | 3 | Synthetic Growth Defect, Negative Genetic, Negative Genetic | 
            
                | SEC17 | YBL050W | Alpha-SNAP cochaperone | physical | 3 | 2 | 3 | Affinity Capture-Western, Affinity Capture-Western, Co-purification | 
            
                | YPT31 | YER031C | Rab family GTPase | genetic | 3 | 2 | 3 | Positive Genetic, Negative Genetic, Negative Genetic | 
            
                | YCK2 | YNL154C | Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform | genetic | 3 | 2 | 3 | Synthetic Lethality, Negative Genetic, Negative Genetic | 
            
                | SNC2 | YOR327C | Vesicle membrane receptor protein (v-SNARE) | genetic | 3 | 2 | 3 | Synthetic Growth Defect, Negative Genetic, Negative Genetic | 
            
                | GCS1 | YDL226C | ADP-ribosylation factor GTPase activating protein (ARF GAP) | genetic | 3 | 2 | 3 | Synthetic Lethality, Negative Genetic, Negative Genetic | 
            
                | SLA1 | YBL007C | Cytoskeletal protein binding protein | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | WBP1 | YEL002C | Beta subunit of the oligosaccharyl transferase glycoprotein complex | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SWP1 | YMR149W | Delta subunit of the oligosaccharyl transferase glycoprotein complex | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | HOC1 | YJR075W | Alpha-1,6-mannosyltransferase | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | OLE1 | YGL055W | Delta(9) fatty acid desaturase | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SKY1 | YMR216C | SR protein kinase (SRPK) | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | CDC50 | YCR094W | Endosomal protein that interacts with phospholipid flippase Drs2p | genetic | 3 | 1 | 3 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | EMP24 | YGL200C | Component of the p24 complex | genetic | 3 | 2 | 2 | Negative Genetic, Negative Genetic, Synthetic Growth Defect | 
            
                | SEC66 | YBR171W | Non-essential subunit of Sec63 complex | genetic | 3 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic | 
            
                | VPS38 | YLR360W | Part of a Vps34p phosphatidylinositol 3-kinase complex | genetic | 3 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Positive Genetic | 
            
                | SEC22 | YLR268W | R-SNARE protein | genetic | 3 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Positive Genetic | 
            
                | STP22 | YCL008C | Component of the ESCRT-I complex | genetic | 3 | 2 | 2 | Phenotypic Suppression, Phenotypic Suppression, Positive Genetic | 
            
                | INP53 | YOR109W | Polyphosphatidylinositol phosphatase | genetic | 3 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic | 
            
                | CWH43 | YCR017C | GPI lipid remodelase | genetic | 3 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic | 
            
                | MNN2 | YBR015C | Alpha-1,2-mannosyltransferase | genetic | 3 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic | 
            
                | SWF1 | YDR126W | Palmitoyltransferase that acts on transmembrane proteins | genetic | 3 | 2 | 2 | Negative Genetic, Negative Genetic, Synthetic Growth Defect | 
            
                | CNE1 | YAL058W | Calnexin | genetic | 3 | 2 | 2 | Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic | 
            
                | GWT1 | YJL091C | Protein involved in the inositol acylation of GlcN-PI | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | STT4 | YLR305C | Phosphatidylinositol-4-kinase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | IMH1 | YLR309C | Protein involved in vesicular transport | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SSD1 | YDR293C | Translational repressor | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | BET2 | YPR176C | Beta subunit of Type II geranylgeranyltransferase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | FKS1 | YLR342W | Catalytic subunit of 1,3-beta-D-glucan synthase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | MYO2 | YOR326W | Type V myosin motor involved in actin-based transport of cargos | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SEC26 | YDR238C | Essential beta-coat protein of the COPI coatomer | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SEC7 | YDR170C | Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SLY1 | YDR189W | Hydrophilic protein involved in ER/Golgi vesicle trafficking | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | BET5 | YML077W | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | YKT6 | YKL196C | Vesicle membrane protein (v-SNARE) with acyltransferase activity | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | YPT1 | YFL038C | Rab family GTPase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | TRS33 | YOR115C | Core component of TRAPP complexes I, II and IV | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | TSC11 | YER093C | Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p) | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | APM3 | YBR288C | Mu3-like subunit of the clathrin associated protein complex (AP-3) | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PBR1 | YNL181W | Putative oxidoreductase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | FAR10 | YLR238W | Protein involved in recovery from arrest in response to pheromone | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | COG2 | YGR120C | Essential component of the conserved oligomeric Golgi complex | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | CBF1 | YJR060W | Basic helix-loop-helix (bHLH) protein | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | SEC24 | YIL109C | Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | AUR1 | YKL004W | Phosphatidylinositol:ceramide phosphoinositol transferase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | MON2 | YNL297C | Protein with a role in endocytosis and vacuole integrity | genetic | 3 | 1 | 2 | Positive Genetic, Positive Genetic, Positive Genetic | 
            
                | DPM1 | YPR183W | Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | LCB5 | YLR260W | Minor sphingoid long-chain base kinase | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | GVP36 | YIL041W | BAR domain protein that localizes to early and late Golgi vesicles | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | BST1 | YFL025C | GPI inositol deacylase of the endoplasmic reticulum (ER) | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ENT4 | YLL038C | Protein of unknown function | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | MDM34 | YGL219C | Mitochondrial component of the ERMES complex | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | NEO1 | YIL048W | Phospholipid translocase (flippase) | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ERP4 | YOR016C | Member of the p24 family involved in ER to Golgi transport | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | PSD1 | YNL169C | Phosphatidylserine decarboxylase of the mitochondrial inner membrane | genetic | 3 | 1 | 2 | Negative Genetic, Negative Genetic, Negative Genetic | 
            
                | ACT1 | YFL039C | Actin, structural protein in cytoskeleton | genetic | 2 | 2 | 2 | Synthetic Haploinsufficiency, Negative Genetic | 
            
                | BNI1 | YNL271C | Formin | genetic | 2 | 2 | 2 | Synthetic Growth Defect, Phenotypic Enhancement | 
            
                | SPO7 | YAL009W | Putative regulatory subunit of Nem1p-Spo7p phosphatase holoenzyme | genetic | 2 | 2 | 2 | Synthetic Growth Defect, Negative Genetic | 
            
                | YKT6 | YKL196C | Vesicle membrane protein (v-SNARE) with acyltransferase activity | physical | 2 | 2 | 2 | Co-purification, Affinity Capture-Western | 
            
                | YCK1 | YHR135C | Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform | genetic | 2 | 2 | 2 | Synthetic Lethality, Negative Genetic | 
            
                | VMA2 | YBR127C | Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase | genetic | 2 | 2 | 2 | Synthetic Lethality, Negative Genetic | 
            
                | ARF1 | YDL192W | ADP-ribosylation factor | physical | 2 | 2 | 2 | Co-purification, Affinity Capture-Western | 
            
                | EXO70 | YJL085W | Subunit of the exocyst complex | genetic | 2 | 2 | 2 | Positive Genetic, Synthetic Growth Defect | 
            
                | ATG27 | YJL178C | Type I membrane protein involved in autophagy and the Cvt pathway | physical | 2 | 2 | 2 | Co-purification, Affinity Capture-MS | 
            
                | INP51 | YIL002C | Phosphatidylinositol 4,5-bisphosphate 5-phosphatase | genetic | 2 | 2 | 2 | Synthetic Growth Defect, Negative Genetic | 
            
                | SDO1 | YLR022C | Guanine nucleotide exchange factor (GEF) for Ria1p | genetic | 2 | 2 | 2 | Synthetic Growth Defect, Negative Genetic | 
            
                | GPI11 | YDR302W | ER membrane protein involved in a late step of GPI anchor assembly | genetic | 2 | 2 | 2 | Negative Genetic, Positive Genetic | 
            
                | RSC4 | YKR008W | Component of the RSC chromatin remodeling complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | KAP95 | YLR347C | Karyopherin beta | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ARC18 | YLR370C | Subunit of the ARP2/3 complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | BET3 | YKR068C | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | CDC11 | YJR076C | Component of the septin ring that is required for cytokinesis | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | COP1 | YDL145C | Alpha subunit of COPI vesicle coatomer complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GLO3 | YER122C | ADP-ribosylation factor GTPase activating protein (ARF GAP) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | COG3 | YER157W | Essential component of the conserved oligomeric Golgi complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | DOA4 | YDR069C | Ubiquitin hydrolase | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | IWR1 | YDL115C | RNA polymerase II transport factor, conserved from yeast to humans | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SEC21 | YNL287W | Gamma subunit of coatomer | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ANP1 | YEL036C | Subunit of the alpha-1,6 mannosyltransferase complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SEC63 | YOR254C | Essential subunit of Sec63 complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | BCY1 | YIL033C | Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | VPS54 | YDR027C | Component of the GARP (Golgi-associated retrograde protein) complex | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | VMA9 | YCL005W-A | Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | VMA8 | YEL051W | Subunit D of the V1 peripheral membrane domain of V-ATPase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | VMA3 | YEL027W | Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | TOR2 | YKL203C | PIK-related protein kinase and rapamycin target | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | VMA5 | YKL080W | Subunit C of the V1 peripheral membrane domain of V-ATPase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | YPT7 | YML001W | Rab family GTPase | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | VPS52 | YDR484W | Component of the GARP (Golgi-associated retrograde protein) complex | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | VPS24 | YKL041W | One of four subunits of the ESCRT-III complex | genetic | 2 | 1 | 2 | Positive Genetic, Positive Genetic | 
            
                | GET3 | YDL100C | Guanine nucleotide exchange factor for Gpa1p | physical | 2 | 1 | 2 | Two-hybrid, Two-hybrid | 
            
                | CNB1 | YKL190W | Calcineurin B | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | TEF4 | YKL081W | Gamma subunit of translational elongation factor eEF1B | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | CLN2 | YPL256C | G1 cyclin involved in regulation of the cell cycle | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | HFL1 | YKR051W | Vacuole membrane protein that interacts with Atg8p | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | DUO1 | YGL061C | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | MCM10 | YIL150C | Essential chromatin-associated protein | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GTR1 | YML121W | Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | CET1 | YPL228W | RNA 5'-triphosphatase involved in mRNA 5' capping | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SEC61 | YLR378C | Conserved ER protein translocation channel | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SEC9 | YGR009C | t-SNARE protein required for secretory vesicle-plasma membrane fusion | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SED5 | YLR026C | cis-Golgi t-SNARE syntaxin | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | EMC1 | YCL045C | Member of conserved endoplasmic reticulum membrane complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | MSO1 | YNR049C | Lipid-interacting protein in SNARE complex assembly machinery | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GTA1 | YEL043W | Protein of unknown function | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ERI1 | YPL096C-A | Endoplasmic reticulum membrane protein that binds and inhibits Ras2p | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | FAT1 | YBR041W | Very long chain fatty acyl-CoA synthetase and fatty acid transporter | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | RIM21 | YNL294C | pH sensor molecule, component of the RIM101 pathway | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GPI17 | YDR434W | Transmembrane protein | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | PTK2 | YJR059W | Serine/threonine protein kinase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | QCR8 | YJL166W | Subunit 8 of ubiquinol cytochrome-c reductase (Complex III) | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GPI19 | YDR437W | Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | AIM34 | YMR003W | Protein of unknown function | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ALG14 | YBR070C | Component of UDP-GlcNAc transferase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | CCW12 | YLR110C | Cell wall mannoprotein | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ERD1 | YDR414C | Predicted membrane protein required for lumenal ER protein retention | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | MSC1 | YML128C | Protein of unknown function | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | GPI8 | YDR331W | Catalytic subunit of the ER membrane GPI transamidase complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | SPT14 | YPL175W | UDP-glycosyltransferase subunit of the GPI-GnT complex | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | ALK2 | YBL009W | Atypical protein kinase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | THR4 | YCR053W | Threonine synthase | genetic | 2 | 1 | 2 | Negative Genetic, Negative Genetic | 
            
                | RPT6 | YGL048C | ATPase of the 19S regulatory particle of the 26S proteasome | genetic | 2 | 2 | 1 | Positive Genetic, Negative Genetic | 
            
                | FIP1 | YJR093C | Subunit of cleavage polyadenylation factor (CPF) | genetic | 2 | 2 | 1 | Positive Genetic, Negative Genetic | 
            
                | VPS29 | YHR012W | Subunit of the membrane-associated retromer complex | genetic | 2 | 2 | 1 | Negative Genetic, Positive Genetic | 
            
                | APL6 | YGR261C | Beta3-like subunit of the yeast AP-3 complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | ERP1 | YAR002C-A | Member of the p24 family involved in ER to Golgi transport | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | ERP2 | YAL007C | Member of the p24 family involved in ER to Golgi transport | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | GDI1 | YER136W | GDP dissociation inhibitor | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | LCB2 | YDR062W | Component of serine palmitoyltransferase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | LST8 | YNL006W | Protein required for the transport of Gap1p | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | CSE2 | YNR010W | Subunit of the RNA polymerase II mediator complex | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | GIM5 | YML094W | Subunit of the heterohexameric cochaperone prefoldin complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | INO4 | YOL108C | Transcription factor involved in phospholipid synthesis | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | RET3 | YPL010W | Zeta subunit of the coatomer complex (COPI) | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | NEM1 | YHR004C | Probable catalytic subunit of Nem1p-Spo7p phosphatase holoenzyme | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | SEN1 | YLR430W | ATP-dependent 5' to 3' RNA/DNA and DNA helicase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | VTI1 | YMR197C | Protein involved in cis-Golgi membrane traffic | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | YIP3 | YNL044W | Protein localized to COPII vesicles | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | YCT1 | YLL055W | High-affinity cysteine-specific transporter | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | UBI4 | YLL039C | Ubiquitin | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | VAC14 | YLR386W | Enzyme regulator | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | VPS51 | YKR020W | Component of the GARP (Golgi-associated retrograde protein) complex | genetic | 2 | 1 | 1 | Phenotypic Suppression, Phenotypic Suppression | 
            
                | UTH1 | YKR042W | Mitochondrial inner membrane protein | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | VPS71 | YML041C | Nucleosome-binding component of the SWR1 complex | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | VPS74 | YDR372C | Golgi PI4K effector, PtdIns4P sensor, and retention receptor | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | VPS3 | YDR495C | Component of CORVET membrane tethering complex | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | VPS13 | YLL040C | Lipid transport protein involved in prospore membrane morphogenesis | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | UPS1 | YLR193C | Phosphatidic acid transfer protein | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | YDJ1 | YNL064C | Type I HSP40 co-chaperone | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | YIP1 | YGR172C | Integral membrane protein | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | GET4 | YOR164C | Protein involved in inserting tail-anchored proteins into ER membranes | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | IRA2 | YOL081W | GTPase-activating protein | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | CPR6 | YLR216C | Peptidyl-prolyl cis-trans isomerase (cyclophilin) | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | MRS6 | YOR370C | Rab escort protein | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | CDC20 | YGL116W | Activator of anaphase-promoting complex/cyclosome (APC/C) | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | LHS1 | YKL073W | Molecular chaperone of the endoplasmic reticulum lumen | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | NUS1 | YDL193W | Forms dehydrodolichyl diphosphate synthase complex with RER2 or SRT1 | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | CBR1 | YIL043C | Cytochrome b reductase and NADH-dependent reductase for Dph3p | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | GCR2 | YNL199C | Transcriptional activator of genes involved in glycolysis | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | HOF1 | YMR032W | F-BAR protein that regulates actin cytoskeleton organization | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | MDY2 | YOL111C | Protein involved in inserting tail-anchored proteins into ER membranes | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | FRQ1 | YDR373W | N-myristoylated calcium-binding protein | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | SEC15 | YGL233W | Essential 113 kDa subunit of the exocyst complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | JNM1 | YMR294W | Component of the yeast dynactin complex | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | TCO89 | YPL180W | Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p) | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | ERG5 | YMR015C | C-22 sterol desaturase | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | GPI2 | YPL076W | Protein involved in the synthesis of GlcNAc-PI | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | TIP1 | YBR067C | Major cell wall mannoprotein with possible lipase activity | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | MTC1 | YJL123C | Protein of unknown function that may interact with ribosomes | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | ANY1 | YMR010W | Protein involved in phospholipid flippase function | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | SGT2 | YOR007C | Glutamine-rich cytoplasmic cochaperone | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | ERP5 | YHR110W | Protein with similarity to Emp24p and Erv25p | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | FPS1 | YLL043W | Aquaglyceroporin, plasma membrane channel | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | CYC2 | YOR037W | Mitochondrial peripheral inner membrane protein | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | DYN3 | YMR299C | Dynein light intermediate chain (LIC) | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | CDS1 | YBR029C | Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | ALG2 | YGL065C | Mannosyltransferase in the N-linked glycosylation pathway | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | APS3 | YJL024C | Small subunit of the clathrin-associated adaptor complex AP-3 | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | NHX1 | YDR456W | Na+/H+ and K+/H+ exchanger | genetic | 2 | 1 | 1 | Phenotypic Enhancement, Phenotypic Enhancement | 
            
                | MMM1 | YLL006W | ER integral membrane protein, ERMES complex subunit | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | ICE2 | YIL090W | Integral ER membrane protein with type-III transmembrane domains | genetic | 2 | 1 | 1 | Positive Genetic, Positive Genetic | 
            
                | SOP4 | YJL192C | ER-membrane protein | genetic | 2 | 1 | 1 | Negative Genetic, Negative Genetic | 
            
                | FKH1 | YIL131C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | SFP1 | YLR403W | Regulates transcription of ribosomal protein and biogenesis genes | regulation | 1 | 1 | 1 | DNA to cDNA expression microarray evidence | 
            
                | FKH2 | YNL068C | Forkhead family transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation- exonuclease evidence | 
            
                | YAP6 | YDR259C | Basic leucine zipper (bZIP) transcription factor | regulation | 1 | 1 | 1 | chromatin immunoprecipitation-chip evidence | 
            
                | CEF1 | YMR213W | Essential splicing factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PSF1 | YDR013W | Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPB3 | YIL021W | RNA polymerase II third largest subunit B44 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPO21 | YDL140C | RNA polymerase II largest subunit B220 | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | NSE3 | YDR288W | Component of the SMC5-SMC6 complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ARP4 | YJL081C | Nuclear actin-related protein involved in chromatin remodeling | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MAK16 | YAL025C | Essential nuclear protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | NOP2 | YNL061W | rRNA m5C methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP4 | YPL043W | Nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL10 | YLR075W | Ribosomal 60S subunit protein L10 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RLP7 | YNL002C | Nucleolar protein similar to large ribosomal subunit L7 proteins | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RRP1 | YDR087C | Essential evolutionarily conserved nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP45 | YAL032C | Protein required for pre-mRNA splicing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRP8 | YHR165C | Component of U4/U6-U5 snRNP complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMX3 | YPR182W | Core Sm protein Sm F | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NSE5 | YML023C | Component of the SMC5-SMC6 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC42 | YLR229C | Small rho-like GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KES1 | YPL145C | Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | MAK21 | YDR060W | Constituent of 66S pre-ribosomal particles | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SIT4 | YDL047W | Ceramide-activated, type 2A-related serine-threonine phosphatase | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | LSM6 | YDR378C | Lsm (Like Sm) protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CSL4 | YNL232W | Exosome non-catalytic core component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPC19 | YNL113W | RNA polymerase subunit AC19 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPC25 | YKL144C | RNA polymerase III subunit C25 | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPA190 | YOR341W | RNA polymerase I largest subunit A190 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPB7 | YDR404C | RNA polymerase II subunit B16 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | THP2 | YHR167W | Subunit of the THO and TREX complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNU56 | YDR240C | Component of U1 snRNP required for mRNA splicing via spliceosome | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPN11 | YFR004W | Metalloprotease subunit of 19S regulatory particle | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPN5 | YDL147W | Subunit of the CSN and 26S proteasome lid complexes | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RPN3 | YER021W | Essential non-ATPase regulatory subunit of the 26S proteasome lid | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | TIF34 | YMR146C | eIF3i subunit of the eukaryotic translation initiation factor 3 (eIF3) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CFT2 | YLR115W | Subunit of the mRNA cleavage and polyadenlylation factor (CPF) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRE10 | YOR362C | Alpha 7 subunit of the 20S proteasome | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CCR4 | YAL021C | Component of the CCR4-NOT transcriptional complex | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | CDC39 | YCR093W | Subunit of the CCR4-NOT1 core complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NAB2 | YGL122C | Nuclear polyadenylated RNA-binding protein | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | NAM7 | YMR080C | ATP-dependent RNA helicase of the SFI superfamily | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PEP1 | YBL017C | Type I transmembrane sorting receptor for multiple vacuolar hydrolases | physical | 1 | 1 | 1 | Co-purification | 
            
                | BMS1 | YPL217C | GTPase required for ribosomal subunit synthesis and rRNA processing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ARP3 | YJR065C | Essential component of the Arp2/3 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BEM1 | YBR200W | Protein containing SH3-domains | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BUD14 | YAR014C | Protein involved in bud-site selection | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | CAP1 | YKL007W | Alpha subunit of the capping protein heterodimer (Cap1p and Cap2p) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | CDC12 | YHR107C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC3 | YLR314C | Component of the septin ring that is required for cytokinesis | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CDC36 | YDL165W | Component of the CCR4-NOT core complex, involved in mRNA decapping | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HDA1 | YNL021W | Catalytic subunit of class II HDA1 histone deacetylase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOG2 | YNR053C | Putative GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COX6 | YHR051W | Subunit VI of cytochrome c oxidase (Complex IV) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CPR1 | YDR155C | Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CTK1 | YKL139W | Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CYR1 | YJL005W | Adenylate cyclase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CYS4 | YGR155W | Cystathionine beta-synthase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DCP2 | YNL118C | Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | EMG1 | YLR186W | Methyltransferase for rRNA | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERP2 | YAL007C | Member of the p24 family involved in ER to Golgi transport | physical | 1 | 1 | 1 | Co-purification | 
            
                | ERV25 | YML012W | Member of the p24 family involved in ER to Golgi transport | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DHH1 | YDL160C | Cytoplasmic DEAD-box helicase and mRNA decapping activator | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | IPP1 | YBR011C | Cytoplasmic inorganic pyrophosphatase (PPase) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | IRR1 | YIL026C | Subunit of the cohesin complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRD1 | YPR112C | Essential conserved small ribosomal subunit (40s) synthesis factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | END3 | YNL084C | EH domain-containing protein involved in endocytosis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CRM1 | YGR218W | Nuclear export factor, exportin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LCB1 | YMR296C | Component of serine palmitoyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MDM10 | YAL010C | Subunit of both the ERMES and the SAM complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MED11 | YMR112C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | HRR25 | YPL204W | Conserved casein kinase, monopolin subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRPL10 | YNL284C | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRP20 | YDR405W | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HDA3 | YPR179C | Subunit of HDA1 histone deacetylase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HDA2 | YDR295C | Subunit of HDA1 histone deacetylase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CMD1 | YBR109C | Calmodulin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NBP35 | YGL091C | Essential cytoplasmic iron-sulfur cluster binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NMD3 | YHR170W | Protein involved in nuclear export of the large ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AFG2 | YLR397C | ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PEP3 | YLR148W | Component of CORVET membrane tethering complex | physical | 1 | 1 | 1 | Co-purification | 
            
                | PIM1 | YBL022C | ATP-dependent Lon protease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | POP7 | YBR167C | Subunit of RNase MRP, nuclear RNase P and telomerase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DAM1 | YGR113W | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUB1 | YNL016W | Poly (A)+ RNA-binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAM1 | YDL090C | Beta subunit of the CAAX farnesyltransferase (FTase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PTI1 | YGR156W | Essential component of CPF (cleavage and polyadenylation factor) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RFC5 | YBR087W | Subunit of heteropentameric Replication factor C (RF-C) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MED8 | YBR193C | Subunit of the RNA polymerase II mediator complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | NUP84 | YDL116W | Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KTR3 | YBR205W | Putative alpha-1,2-mannosyltransferase | physical | 1 | 1 | 1 | Co-purification | 
            
                | CCT2 | YIL142W | Subunit beta of the cytosolic chaperonin Cct ring complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC25 | YLR310C | Membrane bound guanine nucleotide exchange factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BZZ1 | YHR114W | SH3 domain protein implicated in regulating actin polymerization | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | SEC17 | YBL050W | Alpha-SNAP cochaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMD2 | YLR275W | Core Sm protein Sm D2 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | REG1 | YDR028C | Regulatory subunit of type 1 protein phosphatase Glc7p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SNF1 | YDR477W | AMP-activated S/T protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NGG1 | YDR176W | Subunit of chromatin modifying histone acetyltransferase complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC65 | YML105C | Subunit of the signal recognition particle (SRP) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SNU71 | YGR013W | Component of U1 snRNP required for mRNA splicing via spliceosome | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | STT3 | YGL022W | Catalytic subunit of the oligosaccharyltransferase complex of the ER l | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IST2 | YBR086C | Cortical ER protein involved in ER-plasma membrane (PM) tethering | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEN54 | YPL083C | Subunit of the tRNA splicing endonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HEM13 | YDR044W | Coproporphyrinogen III oxidase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | CCT6 | YDR188W | Subunit of the cytosolic chaperonin Cct ring complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SBP1 | YHL034C | Protein that binds eIF4G and has a role in repression of translation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NEW1 | YPL226W | Translation termination and ribosome biogenesis factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATG9 | YDL149W | Transmembrane protein involved in forming Cvt and autophagic vesicles | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ATG9 | YDL149W | Transmembrane protein involved in forming Cvt and autophagic vesicles | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MKS1 | YNL076W | Pleiotropic negative transcriptional regulator | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC3 | YER008C | Subunit of the exocyst complex | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | TLG1 | YDR468C | Essential t-SNARE that mediates fusion of vesicles with the late Golgi | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | VPS45 | YGL095C | Protein of the Sec1p/Munc-18 family | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | TLG2 | YOL018C | Syntaxin-like t-SNARE | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | VPS53 | YJL029C | Component of the GARP (Golgi-associated retrograde protein) complex | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | TPK1 | YJL164C | cAMP-dependent protein kinase catalytic subunit | physical | 1 | 1 | 1 | Biochemical Activity | 
            
                | VMA6 | YLR447C | Subunit d of the V0 integral membrane domain of V-ATPase | physical | 1 | 1 | 1 | Co-purification | 
            
                | VMA6 | YLR447C | Subunit d of the V0 integral membrane domain of V-ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TVP38 | YKR088C | Integral membrane protein | physical | 1 | 1 | 1 | Co-purification | 
            
                | TRS31 | YDR472W | Core component of transport protein particle (TRAPP) complexes I-III | physical | 1 | 1 | 1 | Co-purification | 
            
                | TRS31 | YDR472W | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YPT52 | YKR014C | Endosomal Rab family GTPase | physical | 1 | 1 | 1 | Co-purification | 
            
                | YPT32 | YGL210W | Rab family GTPase involved in the exocytic pathway | physical | 1 | 1 | 1 | Co-purification | 
            
                | YPT31 | YER031C | Rab family GTPase | physical | 1 | 1 | 1 | Co-purification | 
            
                | YPT1 | YFL038C | Rab family GTPase | physical | 1 | 1 | 1 | Co-purification | 
            
                | TVP23 | YDR084C | Integral membrane protein | physical | 1 | 1 | 1 | Co-purification | 
            
                | TVP18 | YMR071C | Integral membrane protein | physical | 1 | 1 | 1 | Co-purification | 
            
                | YIP3 | YNL044W | Protein localized to COPII vesicles | physical | 1 | 1 | 1 | Co-purification | 
            
                | TVP15 | YDR100W | Integral membrane protein | physical | 1 | 1 | 1 | Co-purification | 
            
                | TRA1 | YHR099W | Subunit of SAGA and NuA4 histone acetyltransferase complexes | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | VPS41 | YDR080W | Subunit of the HOPS endocytic tethering complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VRP1 | YLR337C | Verprolin, proline-rich actin-associated protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YNL134C | YNL134C | NADH-dependent aldehyde reductase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | WHI2 | YOR043W | Negative regulator of TORC1 in response to limiting leucine | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS35 | YJL154C | Endosomal subunit of membrane-associated retromer complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UGO1 | YDR470C | Outer membrane component of the mitochondrial fusion machinery | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | XRN1 | YGL173C | Evolutionarily-conserved 5'-3' exonuclease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YMR160W | YMR160W | Protein of unknown function | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | URE2 | YNL229C | Nitrogen catabolite repression transcriptional regulator | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS21 | YOR089C | Endosomal Rab family GTPase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | YOR1 | YGR281W | Plasma membrane ATP-binding cassette (ABC) transporter | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VPH1 | YOR270C | Subunit a of the vacuolar-ATPase V0 domain | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UME6 | YDR207C | Rpd3L histone deacetylase complex subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS64 | YDR200C | Protein required for cytoplasm to vacuole targeting of proteins | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS30 | YPL120W | Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VHT1 | YGR065C | High-affinity plasma membrane H+-biotin (vitamin H) symporter | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VPS60 | YDR486C | Protein involved in late endosome to vacuole transport | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VPS4 | YPR173C | AAA-ATPase involved in multivesicular body (MVB) protein sorting | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | VPS28 | YPL065W | Component of the ESCRT-I complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | UTP8 | YGR128C | Nucleolar protein required for export of tRNAs from the nucleus | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ZPR1 | YGR211W | Essential protein with two zinc fingers | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TRS130 | YMR218C | Component of transport protein particle (TRAPP) complex II | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TRS23 | YDR246W | Core component of transport protein particle (TRAPP) complexes I-III | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UTP5 | YDR398W | Subunit of U3-containing Small Subunit (SSU) processome complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | UTP15 | YMR093W | Nucleolar protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TRP4 | YDR354W | Anthranilate phosphoribosyl transferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YDR415C | YDR415C | Putative aminopeptidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VPS72 | YDR485C | Htz1p-binding component of the SWR1 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YIL152W | YIL152W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YJL107C | YJL107C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YKL050C | YKL050C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TUS1 | YLR425W | Guanine nucleotide exchange factor (GEF) that modulates Rho1p activity | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | URA7 | YBL039C | Major CTP synthase isozyme (see also URA8) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TPS1 | YBR126C | Synthase subunit of trehalose-6-P synthase/phosphatase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YER084W | YER084W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YGL081W | YGL081W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YLR225C | YLR225C | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VMA13 | YPR036W | Subunit H of the V1 peripheral membrane domain of V-ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | YNG2 | YHR090C | Subunit of NuA4, an essential histone acetyltransferase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | VIP1 | YLR410W | Bifunctional inositol pyrophosphate kinase and phosphatase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | TUB4 | YLR212C | Gamma-tubulin | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | SWD1 | YAR003W | Subunit of the COMPASS (Set1C) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SDC1 | YDR469W | Subunit of the COMPASS (Set1C) complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PUF3 | YLL013C | Protein of the mitochondrial outer surface | physical | 1 | 1 | 1 | Affinity Capture-RNA | 
            
                | FAR11 | YNL127W | Protein involved in recovery from cell cycle arrest | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC13 | YDL220C | Single stranded DNA-binding protein found at TG1-3 telomere G-tails | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | BBC1 | YJL020C | Protein possibly involved in assembly of actin patches | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HYP2 | YEL034W | Translation elongation factor eIF-5A | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | POR1 | YNL055C | Mitochondrial porin (voltage-dependent anion channel) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KOG1 | YHR186C | Subunit of TORC1 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC53 | YFL045C | Phosphomannomutase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GYP6 | YJL044C | GTPase-activating protein (GAP) for yeast Rab family member Ypt6p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PCL7 | YIL050W | Pho85p cyclin of the Pho80p subfamily | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CLN1 | YMR199W | G1 cyclin involved in regulation of the cell cycle | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG27 | YLR100W | 3-keto sterol reductase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ERG10 | YPL028W | Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DOP1 | YDR141C | Protein involved in vesicular transport at trans-Golgi network (TGN) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SGS1 | YMR190C | RecQ family nucleolar DNA helicase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ATG7 | YHR171W | Autophagy-related protein and dual specificity member of the E1 family | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RSP5 | YER125W | NEDD4 family E3 ubiquitin ligase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC60 | YPL160W | Cytosolic leucyl tRNA synthetase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IPA1 | YJR141W | Protein implicated in pre-mRNA processing and proteasomal degradation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RNA1 | YMR235C | GTPase activating protein (GAP) for Gsp1p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | EST1 | YLR233C | TLC1 RNA-associated factor involved in telomere length regulation | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | RVS167 | YDR388W | Calmodulin-binding actin-associated protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPN3 | YLR243W | Putative GTPase with a role in biogenesis of RNA pol II and polIII | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | LRO1 | YNR008W | Acyltransferase that converts diacylglycerol to triacylglycerol (TGA) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAR1 | YPL218W | ARF family GTPase | physical | 1 | 1 | 1 | Co-purification | 
            
                | KSP1 | YHR082C | Serine/threonine protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HIR2 | YOR038C | Subunit of HIR nucleosome assembly complex | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | DPB11 | YJL090C | DNA replication initiation protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRE11 | YMR224C | Nuclease subunit of the MRX complex with Rad50p and Xrs2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATG20 | YDL113C | Sorting nexin family member | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | ICP55 | YER078C | Mitochondrial aminopeptidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC4 | YFL005W | Rab family GTPase | physical | 1 | 1 | 1 | Co-purification | 
            
                | SEC4 | YFL005W | Rab family GTPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CIK1 | YMR198W | Kinesin-associated protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWI5 | YDR146C | Transcription factor that recruits Mediator and Swi/Snf complexes | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ECM33 | YBR078W | GPI-anchored protein involved in efficient glucose uptake | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MCK1 | YNL307C | Dual-specificity ser/thr and tyrosine protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BTN2 | YGR142W | v-SNARE binding protein | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | SSL2 | YIL143C | Component of RNA polymerase transcription factor TFIIH holoenzyme | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DBF2 | YGR092W | Ser/Thr kinase involved in transcription and stress response | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RRP3 | YHR065C | Protein involved in rRNA processing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BIR1 | YJR089W | Subunit of chromosomal passenger complex (CPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ERG11 | YHR007C | Lanosterol 14-alpha-demethylase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SNF4 | YGL115W | Activating gamma subunit of the AMP-activated Snf1p kinase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRV2 | YNL138W | CAP (cyclase-associated protein) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DAD1 | YDR016C | Essential subunit of the Dam1 complex (aka DASH complex) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DDI1 | YER143W | Aspartic-type endopeptidase | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | DDI1 | YER143W | Aspartic-type endopeptidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATG1 | YGL180W | Protein serine/threonine kinase | genetic | 1 | 1 | 1 | Phenotypic Suppression | 
            
                | ENT3 | YJR125C | Protein containing an N-terminal epsin-like domain | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FMN1 | YDR236C | Riboflavin kinase, produces riboflavin monophosphate (FMN) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GEP4 | YHR100C | Mitochondrial phosphatidylglycerophosphatase (PGP phosphatase) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IPK1 | YDR315C | Inositol 1,3,4,5,6-pentakisphosphate 2-kinase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | IRE1 | YHR079C | Serine-threonine kinase and endoribonuclease | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ATG19 | YOL082W | Receptor protein for the cytoplasm-to-vacuole targeting (Cvt) pathway | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | LST7 | YGR057C | Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MOB2 | YFL034C-B | Activator of Cbk1p kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PCL8 | YPL219W | Cyclin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PKC1 | YBL105C | Protein serine/threonine kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PPG1 | YNR032W | Serine protein phosphatase involved in formation of FAR complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM101 | YHL027W | Cys2His2 zinc-finger transcriptional repressor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GNP1 | YDR508C | Broad specificity amino acid permease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KEG1 | YFR042W | Integral membrane protein of the ER | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KTI12 | YKL110C | Protein that plays a role in modification of tRNA wobble nucleosides | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COG4 | YPR105C | Essential component of the conserved oligomeric Golgi complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BOS1 | YLR078C | v-SNARE (vesicle specific SNAP receptor) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CEP3 | YMR168C | Essential kinetochore protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ELP3 | YPL086C | Subunit of Elongator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DOC1 | YGL240W | Processivity factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RNA15 | YGL044C | Component of the cleavage and polyadenylation factor I (CF I) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RFT1 | YBL020W | Membrane protein required for translocation of Man5GlcNac2-PP-Dol | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SWR1 | YDR334W | Swi2/Snf2-related ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TAF7 | YMR227C | TFIID subunit (67 kDa) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IES2 | YNL215W | Protein that associates with the INO80 chromatin remodeling complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MRS1 | YIR021W | Splicing protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS8A | YBL072C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS9B | YBR189W | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CSE4 | YKL049C | Centromeric histone H3-like protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MIF2 | YKL089W | Centromeric CDEIII region binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SSC1 | YJR045C | Hsp70 family ATPase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATG23 | YLR431C | Peripheral membrane protein required for autophagy and CVT | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | ATG8 | YBL078C | Ub-like protein | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CTF8 | YHR191C | Subunit of a complex with Ctf18p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ELO3 | YLR372W | Elongase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | EXO1 | YOR033C | 5'-3' exonuclease and flap-endonuclease | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | MEX67 | YPL169C | Poly(A)RNA binding protein involved in nuclear mRNA export | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | OST2 | YOR103C | Epsilon subunit of the oligosaccharyltransferase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RTG2 | YGL252C | Sensor of mitochondrial dysfunction | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC1 | YDR164C | Sm-like protein involved in docking and fusion of exocytic vesicles | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNC1 | YAL030W | Vesicle membrane receptor protein (v-SNARE) | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | SWI4 | YER111C | DNA binding component of the SBF complex (Swi4p-Swi6p) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TIM44 | YIL022W | Essential component of the TIM23 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNC2 | YOR327C | Vesicle membrane receptor protein (v-SNARE) | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | CCZ1 | YBR131W | Subunit of a heterodimeric guanine nucleotide exchange factor (GEF) | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | GOS1 | YHL031C | v-SNARE protein involved in Golgi transport | physical | 1 | 1 | 1 | Co-purification | 
            
                | SPC110 | YDR356W | Inner plaque spindle pole body (SPB) component | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SSO1 | YPL232W | Plasma membrane t-SNARE | physical | 1 | 1 | 1 | Affinity Capture-Western | 
            
                | SSO1 | YPL232W | Plasma membrane t-SNARE | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | KAR2 | YJL034W | ATPase involved in protein import into the ER | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | OST4 | YDL232W | Subunit of the oligosaccharyltransferase complex of the ER lumen | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SRM1 | YGL097W | Nucleotide exchange factor for Gsp1p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC2 | YNL272C | Guanyl-nucleotide exchange factor for the small G-protein Sec4p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SLA2 | YNL243W | Adaptor protein that links actin to clathrin and endocytosis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BNR1 | YIL159W | Formin | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | FCP1 | YMR277W | Carboxy-terminal domain (CTD) phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RBL2 | YOR265W | Protein involved in microtubule morphogenesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SMI1 | YGR229C | Protein involved in the regulation of cell wall synthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BUD6 | YLR319C | Actin- and formin-interacting protein | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | MCM7 | YBR202W | Component of the Mcm2-7 hexameric helicase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AKR1 | YDR264C | Palmitoyl transferase involved in protein palmitoylation | physical | 1 | 1 | 1 | Co-purification | 
            
                | AKR1 | YDR264C | Palmitoyl transferase involved in protein palmitoylation | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GNT1 | YOR320C | N-acetylglucosaminyltransferase | physical | 1 | 1 | 1 | Co-purification | 
            
                | NNF2 | YGR089W | Protein that exhibits physical and genetic interactions with Rpb8p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BAT2 | YJR148W | Cytosolic branched-chain amino acid (BCAA) aminotransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SST2 | YLR452C | GTPase-activating protein for Gpa1p | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | STU2 | YLR045C | Microtubule polymerase of the XMAP215/Dis1 family | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AZF1 | YOR113W | Zinc-finger transcription factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNM1 | YDR478W | Ribonuclease MRP complex subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL1B | YGL135W | Ribosomal 60S subunit protein L1B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DFG5 | YMR238W | Putative mannosidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PFY1 | YOR122C | Profilin | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | SSO2 | YMR183C | Plasma membrane t-SNARE | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CHS5 | YLR330W | Component of the exomer complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GTT1 | YIR038C | ER associated glutathione S-transferase | physical | 1 | 1 | 1 | Two-hybrid | 
            
                | LRS4 | YDR439W | Nucleolar protein that forms a complex with Csm1p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GGA1 | YDR358W | Golgi-localized protein with homology to gamma-adaptin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HSV2 | YGR223C | Phosphatidylinositol 3,5-bisphosphate-binding protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PMT2 | YAL023C | Protein O-mannosyltransferase of the ER membrane | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS2 | YGL123W | Protein component of the small (40S) subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS3 | YNL178W | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STM1 | YLR150W | Protein required for optimal translation under nutrient stress | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM20 | YOR275C | Protein involved in proteolytic activation of Rim101p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DID2 | YKR035W-A | Class E protein of the vacuolar protein-sorting (Vps) pathway | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | STV1 | YMR054W | Subunit a of the vacuolar-ATPase V0 domain | physical | 1 | 1 | 1 | Co-purification | 
            
                | CIN2 | YPL241C | GTPase-activating protein (GAP) for Cin4p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BET4 | YJL031C | Alpha subunit of Type II geranylgeranyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CLB3 | YDL155W | B-type cyclin involved in cell cycle progression | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL28 | YGL103W | Ribosomal 60S subunit protein L28 | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RAX1 | YOR301W | Protein involved in establishing bud site selection | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MOG1 | YJR074W | Conserved nuclear protein that interacts with GTP-Gsp1p | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | DPM1 | YPR183W | Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane | physical | 1 | 1 | 1 | Co-purification | 
            
                | PIH1 | YHR034C | Component of the conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CUE4 | YML101C | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | COQ3 | YOL096C | O-methyltransferase | genetic | 1 | 1 | 1 | Phenotypic Enhancement | 
            
                | SRS2 | YJL092W | DNA helicase and DNA-dependent ATPase | genetic | 1 | 1 | 1 | Dosage Lethality | 
            
                | PSG1 | YKL077W | Protein that promotes the transport and maturation of Pma1 with Exp1 | physical | 1 | 1 | 1 | Affinity Capture-MS | 
            
                | CFD1 | YIL003W | Highly conserved iron-sulfur cluster binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ANT1 | YPR128C | Peroxisomal adenine nucleotide transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC8 | YPR055W | Essential 121 kDa subunit of the exocyst complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL40B | YKR094C | Ubiquitin-ribosomal 60S subunit protein L40B fusion protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SPC105 | YGL093W | Subunit of a kinetochore-microtubule binding complex | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | SEC11 | YIR022W | 18kDa catalytic subunit of the Signal Peptidase Complex (SPC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRE2 | YDR483W | Alpha1,2-mannosyltransferase of the Golgi | physical | 1 | 1 | 1 | Co-purification | 
            
                | EHT1 | YBR177C | Octanoyl-CoA:ethanol acyltransferase | physical | 1 | 1 | 1 | Co-purification | 
            
                | ALG3 | YBL082C | Dolichol-P-Man dependent alpha(1-3) mannosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HRQ1 | YDR291W | 3'-5' DNA helicase of the conserved RecQ family | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | MRPL17 | YNL252C | Mitochondrial ribosomal protein of the large subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GLG1 | YKR058W | Glycogenin glucosyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RIM8 | YGL045W | Protein involved in proteolytic activation of Rim101p | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CUE3 | YGL110C | Subunit of ribosome-associated quality control trigger complex (RQT) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NOP19 | YGR251W | Ribosome biogenesis factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ORC4 | YPR162C | Subunit of the origin recognition complex (ORC) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IRC8 | YJL051W | Bud tip localized protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RTT109 | YLL002W | Histone acetyltransferase | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | RIA1 | YNL163C | Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis | genetic | 1 | 1 | 1 | Synthetic Growth Defect | 
            
                | TBF1 | YPL128C | Telobox-containing general regulatory factor | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ROT1 | YMR200W | Molecular chaperone involved in protein folding in ER | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GYP7 | YDL234C | GTPase-activating protein for yeast Rab family members | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GAA1 | YLR088W | Subunit of the GPI:protein transamidase complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PTM1 | YKL039W | Protein of unknown function | physical | 1 | 1 | 1 | Co-purification | 
            
                | SPB4 | YFL002C | Putative ATP-dependent RNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GVP36 | YIL041W | BAR domain protein that localizes to early and late Golgi vesicles | physical | 1 | 1 | 1 | Co-purification | 
            
                | ISR1 | YPR106W | Predicted protein kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPL34B | YIL052C | Ribosomal 60S subunit protein L34B | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ATG21 | YPL100W | Phosphoinositide binding protein | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | EMC4 | YGL231C | Member of conserved ER transmembrane complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PIK1 | YNL267W | Phosphatidylinositol 4-kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PIB2 | YGL023C | Phosphatidylinositol 3-phosphate binding protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SNX41 | YDR425W | Sorting nexin | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | AAD4 | YDL243C | Putative aryl-alcohol dehydrogenase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RPS27B | YHR021C | Protein component of the small (40S) ribosomal subunit | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | MNN5 | YJL186W | Alpha-1,2-mannosyltransferase | physical | 1 | 1 | 1 | Co-purification | 
            
                | KTR4 | YBR199W | Glycosyltransferase involved in protein glycosylation | physical | 1 | 1 | 1 | Co-purification | 
            
                | KTR1 | YOR099W | Alpha-1,2-mannosyltransferase | physical | 1 | 1 | 1 | Co-purification | 
            
                | SNA4 | YDL123W | Protein of unknown function | physical | 1 | 1 | 1 | Co-purification | 
            
                | LIP1 | YMR298W | Ceramide synthase subunit | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | RIM13 | YMR154C | Calpain-like cysteine protease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | RHO3 | YIL118W | Non-essential small GTPase of the Rho/Rac family of Ras-like proteins | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | EAR1 | YMR171C | Specificity factor required for Rsp5p-dependent ubiquitination | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | NCB2 | YDR397C | Subunit of a heterodimeric NC2 transcription regulator complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SAD1 | YFR005C | Conserved zinc-finger domain protein involved in pre-mRNA splicing | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SHR3 | YDL212W | Endoplasmic reticulum packaging chaperone | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | ALG7 | YBR243C | UDP-N-acetyl-glucosamine-1-P transferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | KRE9 | YJL174W | Glycoprotein involved in cell wall beta-glucan assembly | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | DCW1 | YKL046C | Putative mannosidase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | OAC1 | YKL120W | Mitochondrial inner membrane transporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | BIG1 | YHR101C | Integral membrane protein of the endoplasmic reticulum | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PHS1 | YJL097W | Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | LCB3 | YJL134W | Long-chain base-1-phosphate phosphatase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | ISC1 | YER019W | Inositol phosphosphingolipid phospholipase C | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | BSC4 | YNL269W | Protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | STE24 | YJR117W | Highly conserved zinc metalloprotease | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | IML2 | YJL082W | Protein required for clearance of inclusion bodies | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TDA5 | YLR426W | Putative protein of unknown function | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GPI10 | YGL142C | Integral membrane protein involved in GPI anchor synthesis | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CRD1 | YDL142C | Cardiolipin synthase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | GPI15 | YNL038W | Protein involved in the synthesis of GlcNAc-PI | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CDC1 | YDR182W | Putative mannose-ethanolamine phosphate phosphodiesterase | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | FEN2 | YCR028C | Plasma membrane H+-pantothenate symporter | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PMP2 | YEL017C-A | Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p) | physical | 1 | 1 | 1 | PCA | 
            
                | SEC72 | YLR292C | Non-essential subunit of Sec63 complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | GAS4 | YOL132W | 1,3-beta-glucanosyltransferase | physical | 1 | 1 | 1 | PCA | 
            
                | PIF1 | YML061C | DNA helicase, potent G-quadruplex DNA binder/unwinder | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | EMC2 | YJR088C | Member of conserved ER transmembrane complex | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | PRM7 | YDL039C | Pheromone-regulated protein | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC12 | YNR026C | Guanine nucleotide exchange factor (GEF) | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEG2 | YKL105C | Eisosome component | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HMI1 | YOL095C | Mitochondrial inner membrane localized ATP-dependent DNA helicase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | HPM1 | YIL110W | AdoMet-dependent methyltransferase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | CAX4 | YGR036C | Dolichyl pyrophosphate (Dol-P-P) phosphatase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | SEC59 | YMR013C | Dolichol kinase | genetic | 1 | 1 | 1 | Negative Genetic | 
            
                | TEP1 | YNL128W | PTEN homolog with no demonstrated inositol lipid phosphatase activity | genetic | 1 | 1 | 1 | Positive Genetic | 
            
                | PGA1 | YNL158W | Essential component of GPI-mannosyltransferase II | genetic | 1 | 1 | 1 | Negative Genetic |