GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	physical	14	4	10	Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Co-fractionation, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	genetic	8	4	8	Synthetic Growth Defect, Synthetic Growth Defect, Phenotypic Enhancement, Synthetic Growth Defect, Phenotypic Enhancement, Negative Genetic, Synthetic Lethality, Synthetic Growth Defect
HSP82	YPL240C	Hsp90 chaperone	physical	7	1	6	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	physical	6	1	5	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSE2	YBR169C	Member of Hsp110 subclass of the heat shock protein 70 (HSP70) family	physical	5	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS
BUD27	YFL023W	Unconventional prefoldin protein involved in translation initiation	physical	5	3	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, PCA, Affinity Capture-MS
SNF1	YDR477W	AMP-activated S/T protein kinase	physical	5	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
FES1	YBR101C	Hsp70 (Ssa1p) nucleotide exchange factor	physical	4	3	4	Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS
MES1	YGR264C	Methionyl-tRNA synthetase	physical	4	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
ACO1	YLR304C	Aconitase	physical	4	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS
NUP1	YOR098C	FG-nucleoporin component of central core of the nuclear pore complex	physical	4	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
NPL3	YDR432W	RNA-binding protein	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ECM16	YMR128W	Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	physical	4	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
MGR1	YCL044C	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	genetic	4	1	2	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
RPN11	YFR004W	Metalloprotease subunit of 19S regulatory particle	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
REG1	YDR028C	Regulatory subunit of type 1 protein phosphatase Glc7p	genetic	3	2	2	Dosage Rescue, Phenotypic Suppression, Dosage Rescue
SRO9	YCL037C	Cytoplasmic RNA-binding protein	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
PUF3	YLL013C	Protein of the mitochondrial outer surface	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
SUP35	YDR172W	Translation termination factor eRF3	physical	3	2	2	Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Co-purification
GLC7	YER133W	Type 1 S/T protein phosphatase (PP1) catalytic subunit	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
MIA40	YKL195W	Import and assembly protein in mitochondrial intermembrane space	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS4B	YHR203C	Protein component of the small (40S) ribosomal subunit	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPA190	YOR341W	RNA polymerase I largest subunit A190	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPA135	YPR010C	RNA polymerase I second largest subunit A135	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPN10	YHR200W	Proteasome polyubiquitin receptor	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ENO2	YHR174W	Enolase II, a phosphopyruvate hydratase	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
FBA1	YKL060C	Fructose 1,6-bisphosphate aldolase	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PFK1	YGR240C	Alpha subunit of heterooctameric phosphofructokinase	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
GSF2	YML048W	Endoplasmic reticulum (ER) localized integral membrane protein	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
AIP5	YFR016C	Protein that positively regulates actin assembly	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SIS1	YNL007C	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
CIK1	YMR198W	Kinesin-associated protein	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
NUP2	YLR335W	Nucleoporin involved in nucleocytoplasmic transport	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSA2	YLL024C	HSP70 family ATP-binding protein	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SNL1	YIL016W	Ribosome-associated protein	physical	3	1	2	Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TDA3	YHR009C	Putative oxidoreductase involved in late endosome to Golgi transport	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
THS1	YIL078W	Threonyl-tRNA synthetase	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
UTP10	YJL109C	Nucleolar protein	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TUB3	YML124C	Alpha-tubulin	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ZDS1	YMR273C	Protein with a role in regulating Swe1p-dependent polarized growth	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
STI1	YOR027W	Evolutionarily-conserved Hsp90 cochaperone	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TCB1	YOR086C	Lipid-binding ER protein involved in ER-plasma membrane tethering	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SYT1	YPR095C	Guanine nucleotide exchange factor (GEF) for Arf proteins	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSZ1	YHR064C	Hsp70 protein that interacts with Zuo1p (a DnaJ homolog)	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPL20A	YMR242C	Ribosomal 60S subunit protein L20A	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPL8B	YLL045C	Ribosomal 60S subunit protein L8A	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
FKH1	YIL131C	Forkhead family transcription factor	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence
CRM1	YGR218W	Nuclear export factor, exportin	physical	2	2	2	Reconstituted Complex, Affinity Capture-MS
NUP60	YAR002W	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	2	2	Affinity Capture-Western, Affinity Capture-MS
JJJ1	YNL227C	Co-chaperone that stimulates the ATPase activity of Ssa1p	genetic	2	2	2	Synthetic Lethality, Dosage Rescue
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	physical	2	2	2	PCA, Affinity Capture-MS
SBH1	YER087C-B	Beta subunit of Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p)	physical	2	2	2	Affinity Capture-MS, Two-hybrid
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	genetic	2	2	2	Dosage Lethality, Phenotypic Suppression
NUP188	YML103C	Subunit of the inner ring of the nuclear pore complex (NPC)	genetic	2	2	2	Phenotypic Suppression, Negative Genetic
YBT1	YLL048C	Transporter of the ATP-binding cassette (ABC) family	physical	2	2	2	Affinity Capture-MS, PCA
TSA1	YML028W	Thioredoxin peroxidase	physical	2	2	2	Affinity Capture-MS, Reconstituted Complex
BMH1	YER177W	14-3-3 protein, major isoform	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ILS1	YBL076C	Cytoplasmic isoleucine-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NMD3	YHR170W	Protein involved in nuclear export of the large ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PRE9	YGR135W	Alpha 3 subunit of the 20S proteasome	genetic	2	1	2	Dosage Rescue, Dosage Rescue
CSN9	YDR179C	Subunit of the Cop9 signalosome	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PGI1	YBR196C	Glycolytic enzyme phosphoglucose isomerase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
REG1	YDR028C	Regulatory subunit of type 1 protein phosphatase Glc7p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RTS3	YGR161C	Putative component of the protein phosphatase type 2A complex	genetic	2	1	2	Negative Genetic, Negative Genetic
LIA1	YJR070C	Deoxyhypusine hydroxylase	genetic	2	1	2	Negative Genetic, Negative Genetic
SNF4	YGL115W	Activating gamma subunit of the AMP-activated Snf1p kinase complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PEX29	YDR479C	ER-resident protein involved in peroxisomal biogenesis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PEX10	YDR265W	Peroxisomal membrane E3 ubiquitin ligase	genetic	2	1	2	Negative Genetic, Negative Genetic
RPS8A	YBL072C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS7A	YOR096W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SRO7	YPR032W	Effector of Rab GTPase Sec4p	genetic	2	1	2	Negative Genetic, Negative Genetic
MCA1	YOR197W	Ca2+-dependent cysteine protease	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
STE24	YJR117W	Highly conserved zinc metalloprotease	genetic	2	1	2	Negative Genetic, Negative Genetic
RPS20	YHL015W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	genetic	2	1	2	Negative Genetic, Negative Genetic
ATG15	YCR068W	Phospholipase	genetic	2	1	2	Negative Genetic, Negative Genetic
SRL4	YPL033C	Protein of unknown function	genetic	2	1	2	Negative Genetic, Negative Genetic
NAT1	YDL040C	Subunit of protein N-terminal acetyltransferase NatA	genetic	2	2	1	Dosage Rescue, Synthetic Growth Defect
HAC1	YFL031W	Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog)	genetic	2	2	1	Phenotypic Suppression, Dosage Rescue
YME1	YPR024W	Catalytic subunit of i-AAA protease complex	genetic	2	2	1	Dosage Rescue, Synthetic Growth Defect
CDC73	YLR418C	Component of the Paf1p complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CHD1	YER164W	Chromatin remodeler that regulates various aspects of transcription	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CKA1	YIL035C	Alpha catalytic subunit of casein kinase 2 (CK2)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BFR2	YDR299W	Component of the SSU and 90S preribosomes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EAF1	YDR359C	Component of the NuA4 histone acetyltransferase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ERB1	YMR049C	Constituent of 66S pre-ribosomal particles	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
IPI1	YHR085W	Component of the Rix1 complex and possibly pre-replicative complexes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RIC1	YLR039C	Protein involved in retrograde transport to the cis-Golgi network	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BRR2	YER172C	RNA-dependent ATPase RNA helicase (DEIH box)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PRP8	YHR165C	Component of U4/U6-U5 snRNP complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SNU114	YKL173W	GTPase component of U5 snRNP involved in mRNA splicing via spliceosome	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SPP382	YLR424W	Essential protein that forms a dimer with Ntr2p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EMW1	YNL313C	Essential conserved protein with a role in cell wall integrity	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NAN1	YPL126W	U3 snoRNP protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NOP58	YOR310C	Protein involved in producing mature rRNAs and snoRNAs	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DBP7	YKR024C	Putative ATP-dependent RNA helicase of the DEAD-box family	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MAK21	YDR060W	Constituent of 66S pre-ribosomal particles	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RRP5	YMR229C	RNA binding protein involved in synthesis of 18S and 5.8S rRNAs	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ALB1	YJL122W	Shuttling pre-60S factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MTR4	YJL050W	RNA duplex-sensing translocase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DIS3	YOL021C	Exosome core complex catalytic subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPC40	YPR110C	RNA polymerase subunit AC40	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RRP4	YHR069C	Exosome non-catalytic core component	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RET1	YOR207C	Second-largest subunit of RNA polymerase III	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPC34	YNR003C	RNA polymerase III subunit C34	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPC82	YPR190C	RNA polymerase III subunit C82	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HPR1	YDR138W	Subunit of THO/TREX complexes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MFT1	YML062C	Subunit of the THO complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RSC2	YLR357W	Component of the RSC chromatin remodeling complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RSC4	YKR008W	Component of the RSC chromatin remodeling complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SRB4	YER022W	Subunit of the RNA polymerase II mediator complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RGR1	YLR071C	Subunit of the RNA polymerase II mediator complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SNP1	YIL061C	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DST1	YGL043W	General transcription elongation factor TFIIS	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PWP1	YLR196W	Protein with WD-40 repeats involved in rRNA processing	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CEX1	YOR112W	Component of nuclear aminoacylation-dependent tRNA export pathway	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SPT16	YGL207W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPN2	YIL075C	Subunit of the 26S proteasome	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PRT1	YOR361C	eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
KAP95	YLR347C	Karyopherin beta	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CFT1	YDR301W	RNA-binding subunit of the mRNA cleavage and polyadenylation factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ALA1	YOR335C	Cytoplasmic and mitochondrial alanyl-tRNA synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PUS1	YPL212C	tRNA:pseudouridine synthase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RCL1	YOL010W	Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RTT10	YPL183C	WD40 domain-containing protein involved in endosomal recycling	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ARO1	YDR127W	Pentafunctional arom protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ARP3	YJR065C	Essential component of the Arp2/3 complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ASF1	YJL115W	Nucleosome assembly factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CCL1	YPR025C	Cyclin partner of the cyclin-dependent kinase (CDK) Kin28p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CAF40	YNL288W	Component of the CCR4-NOT transcriptional complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ATP11	YNL315C	Molecular chaperone	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HDA1	YNL021W	Catalytic subunit of class II HDA1 histone deacetylase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DNA2	YHR164C	ATP-dependent 5'-flap endonuclease and DNA helicase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EAF3	YPR023C	Component of the Rpd3S histone deacetylase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FIP1	YJR093C	Subunit of cleavage polyadenylation factor (CPF)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FAP1	YNL023C	Protein that binds to Fpr1p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HAT1	YPL001W	Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ECM5	YMR176W	Subunit of the Snt2C complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HSH155	YMR288W	U2-snRNP associated splicing factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HIF1	YLL022C	Non-essential component of the HAT-B histone acetyltransferase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HTB2	YBL002W	Histone H2B	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ISW2	YOR304W	ATP-dependent DNA translocase involved in chromatin remodeling	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ECM29	YHL030W	Scaffold protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
KRE33	YNL132W	Acetyltransferase required for biogenesis of small ribosomal subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MRD1	YPR112C	Essential conserved small ribosomal subunit (40s) synthesis factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LSM4	YER112W	Lsm (Like Sm) protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MCM5	YLR274W	Component of the Mcm2-7 hexameric helicase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FAB1	YFR019W	1-phosphatidylinositol-3-phosphate 5-kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MRP1	YDR347W	Mitochondrial ribosomal protein of the small subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ATG26	YLR189C	UDP-glucose:sterol glucosyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MRPS28	YDR337W	Mitochondrial ribosomal protein of the small subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HDA2	YDR295C	Subunit of HDA1 histone deacetylase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MSH6	YDR097C	Protein required for mismatch repair in mitosis and meiosis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MAM33	YIL070C	Acidic protein of the mitochondrial matrix	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HTZ1	YOL012C	Histone variant H2AZ	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
IES1	YFL013C	Subunit of the INO80 chromatin remodeling complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HER1	YOR227W	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
AHA1	YDR214W	Co-chaperone that binds Hsp82p and activates its ATPase activity	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PAP1	YKR002W	Poly(A) polymerase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HMO1	YDR174W	Chromatin associated high mobility group (HMG) family member	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LPD1	YFL018C	Dihydrolipoamide dehydrogenase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
POL1	YNL102W	Catalytic subunit of the DNA polymerase I alpha-primase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CWC22	YGR278W	Spliceosome-associated protein that is required for pre-mRNA splicing	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NRD1	YNL251C	RNA-binding subunit of Nrd1 complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MET18	YIL128W	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RFC1	YOR217W	Subunit of heteropentameric Replication factor C (RF-C)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RFX1	YLR176C	Major transcriptional repressor of DNA-damage-regulated genes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PHO23	YNL097C	Component of the Rpd3L histone deacetylase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RCO1	YMR075W	Essential component of the Rpd3S histone deacetylase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CTI6	YPL181W	Component of the Rpd3L histone deacetylase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ADE3	YGR204W	Cytoplasmic trifunctional enzyme	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DBP2	YNL112W	ATP-dependent RNA helicase of the DEAD-box protein family	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PIL1	YGR086C	Eisosome core component	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SEC21	YNL287W	Gamma subunit of coatomer	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SAM1	YLR180W	S-adenosylmethionine synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SEC7	YDR170C	Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SET2	YJL168C	Histone methyltransferase with a role in transcriptional elongation	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HOS4	YIL112W	Subunit of the Set3 complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BZZ1	YHR114W	SH3 domain protein implicated in regulating actin polymerization	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
INP52	YNL106C	Polyphosphatidylinositol phosphatase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SLY1	YDR189W	Hydrophilic protein involved in ER/Golgi vesicle trafficking	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SMC1	YFL008W	Subunit of the multiprotein cohesin complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CCT8	YJL008C	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SMC3	YJL074C	Subunit of the multiprotein cohesin complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SAK1	YER129W	Upstream serine/threonine kinase for the SNF1 complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ROM2	YLR371W	Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CAM1	YPL048W	One of two isoforms of the gamma subunit of eEF1B	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NEW1	YPL226W	Translation termination and ribosome biogenesis factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BCK1	YJL095W	MAPKKK acting in the protein kinase C signaling pathway	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RAD1	YPL022W	Single-stranded DNA endonuclease (with Rad10p)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BRE2	YLR015W	Subunit of COMPASS (Set1C) complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RRP12	YPL012W	Protein required for export of the ribosomal subunits	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DOT6	YER088C	Protein involved in rRNA and ribosome biogenesis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FPR3	YML074C	Nucleolar peptidyl-prolyl cis-trans isomerase (PPIase)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MSD1	YPL104W	Mitochondrial aspartyl-tRNA synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NGL2	YMR285C	Protein involved in 5.8S rRNA processing	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ADO1	YJR105W	Adenosine kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RIM15	YFL033C	Protein kinase involved in cell proliferation in response to nutrients	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ATG29	YPL166W	Autophagy-specific protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FOL2	YGR267C	GTP-cyclohydrolase I, catalyzes first step in folic acid biosynthesis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GPP1	YIL053W	Constitutively expressed DL-glycerol-3-phosphate phosphatase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
KIN1	YDR122W	S/T protein kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HSH49	YOR319W	U2-snRNP associated splicing factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PCL7	YIL050W	Pho85p cyclin of the Pho80p subfamily	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FAR1	YJL157C	CDK inhibitor and nuclear anchor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DLD3	YEL071W	2-hydroxyglutarate transhydrogenase, and minor D-lactate dehydrogenase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DOP1	YDR141C	Protein involved in vesicular transport at trans-Golgi network (TGN)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
APE1	YKL103C	Vacuolar aminopeptidase yscI	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CDC37	YDR168W	Essential Hsp90p co-chaperone	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
KIN2	YLR096W	S/T protein kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HIR2	YOR038C	Subunit of HIR nucleosome assembly complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DIA2	YOR080W	Origin-binding F-box protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CTF4	YPR135W	Chromatin-associated protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LHS1	YKL073W	Molecular chaperone of the endoplasmic reticulum lumen	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SKG3	YLR187W	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LUG1	YLR352W	Protein of unknown function with similarity to F-box proteins	genetic	2	1	1	Negative Genetic, Negative Genetic
SKI2	YLR398C	Ski complex component and putative RNA helicase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GSY1	YFR015C	Glycogen synthase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MAS2	YHR024C	Alpha subunit of the mitochondrial processing protease (MPP)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ASR1	YPR093C	Ubiquitin ligase that modifies and regulates RNA Pol II	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PPZ1	YML016C	Serine/threonine protein phosphatase Z, isoform of Ppz2p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CBR1	YIL043C	Cytochrome b reductase and NADH-dependent reductase for Dph3p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ADH6	YMR318C	NADPH-dependent medium chain alcohol dehydrogenase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MEC3	YLR288C	DNA damage and meiotic pachytene checkpoint protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PRS5	YOL061W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PMD1	YER132C	Protein with an N-terminal kelch-like domain	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
APE2	YKL157W	Aminopeptidase yscII	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NTA1	YJR062C	Amidase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EFM1	YHL039W	Lysine methyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PKH1	YDR490C	Serine/threonine protein kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SIR3	YLR442C	Silencing protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SIR1	YKR101W	Protein involved in silencing at mating-type loci HML and HMR	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SKA1	YKL023W	SKI complex-associated protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SNF8	YPL002C	Component of the ESCRT-II complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GZF3	YJL110C	GATA zinc finger protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GDS1	YOR355W	Protein involved in histone H4 acetylation at ribosomal protein genes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RAD4	YER162C	Damaged-DNA binding subunit of Nuclear Excision Repair Factor 2	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SPC19	YDR201W	Essential subunit of the Dam1 complex (aka DASH complex)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
COG4	YPR105C	Essential component of the conserved oligomeric Golgi complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SIW14	YNL032W	Inositol phosphatase involved in inositol pyrophosphate metabolism	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
COG7	YGL005C	Component of the conserved oligomeric Golgi complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MDR1	YGR100W	Cytoplasmic GTPase-activating protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GRC3	YLL035W	Polynucleotide kinase present on rDNA	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SMC2	YFR031C	Subunit of the condensin complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
JIP5	YPR169W	Protein required for biogenesis of the large ribosomal subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPP1	YHR062C	Subunit of both RNase MRP and nuclear RNase P	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CTK2	YJL006C	Beta subunit of C-terminal domain kinase I (CTDK-I)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EPS1	YIL005W	ER protein with chaperone and co-chaperone activity	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MAD1	YGL086W	Coiled-coil protein involved in spindle-assembly checkpoint	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SEC22	YLR268W	R-SNARE protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PEP8	YJL053W	Vacuolar protein component of the retromer	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HRB1	YNL004W	Poly(A+) RNA-binding protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SSA3	YBL075C	ATPase involved in protein folding and the response to stress	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GIC1	YHR061C	Rho-family GTPase interacting protein and Cdc42p effector	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MAC1	YMR021C	Copper-sensing transcription factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PEX28	YHR150W	Peroxisomal integral membrane peroxin	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RGA2	YDR379W	GTPase-activating protein for polarity-establishment protein Cdc42p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SSA4	YER103W	Heat shock protein that is highly induced upon stress	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CHS5	YLR330W	Component of the exomer complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
REV3	YPL167C	Catalytic subunit of DNA polymerase zeta	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HPA2	YPR193C	Tetrameric histone acetyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EIS1	YMR031C	Component of the eisosome required for proper eisosome assembly	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ENT5	YDR153C	Protein containing an N-terminal epsin-like domain	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DBP6	YNR038W	Essential protein involved in ribosome biogenesis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YDR061W	YDR061W	Protein with similarity to ABC transporter family members	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UTP4	YDR324C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SXM1	YDR395W	Nuclear transport factor (karyopherin)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TFB3	YDR460W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YEL025C	YEL025C	Putative protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ZRG8	YER033C	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ZNF1	YFL052W	Zinc cluster transcription factor that regulates respiratory growth	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TAN1	YGL232W	Putative tRNA acetyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UTP22	YGR090W	Component of the small-subunit processome	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YGR130C	YGR130C	Component of the eisosome with unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YPP1	YGR198W	Cargo-transport protein involved in endocytosis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YTA7	YGR270W	Chromatin-binding ATPase that regulates histone gene expression	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
STE20	YHL007C	Cdc42p-activated signal transducing kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YHL008C	YHL008C	Putative protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YAP3	YHL009C	Basic leucine zipper (bZIP) transcription factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YLF2	YHL014C	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
VPS29	YHR012W	Subunit of the membrane-associated retromer complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UBA4	YHR111W	E1-like protein that activates Urm1p before urmylation	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UTP25	YIL091C	Nucleolar protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
STH1	YIL126W	ATPase component of the RSC chromatin remodeling complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YPS6	YIR039C	Putative GPI-anchored aspartic protease	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
URB2	YJR041C	Protein required for normal metabolism of the rRNA primary transcript	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
URB1	YKL014C	Protein required for the normal accumulation of 25S and 5.8S rRNAs	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TTI1	YKL033W	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TOF2	YKR010C	Protein required for rDNA silencing and mitotic rDNA condensation	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TRM2	YKR056W	tRNA methyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TIF1	YKR059W	Translation initiation factor eIF4A	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TVP38	YKR088C	Integral membrane protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UTP13	YLR222C	Nucleolar protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YHC1	YLR298C	Component of the U1 snRNP complex required for pre-mRNA splicing	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TAL1	YLR354C	Transaldolase, enzyme in the non-oxidative pentose phosphate pathway	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UTP21	YLR409C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
VIP1	YLR410W	Bifunctional inositol pyrophosphate kinase and phosphatase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SST2	YLR452C	GTPase-activating protein for Gpa1p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YML096W	YML096W	Putative protein with similarity to asparagine synthetases	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
VAN1	YML115C	Component of the mannan polymerase I	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YMR027W	YMR027W	A metal-dependent phosphatase, part of the DUF89 protein family	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UTP15	YMR093W	Nucleolar protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YMR099C	YMR099C	Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TRM732	YMR259C	Protein involved in 2'-O-methylation of C32 of substrate tRNAs	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TOP2	YNL088W	Topoisomerase II	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TOF1	YNL273W	Subunit of a replication-pausing checkpoint complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YNR029C	YNR029C	Putative protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TOP1	YOL006C	Topoisomerase I	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YOL057W	YOL057W	Dipeptidyl-peptidase III	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
WRS1	YOL097C	Cytoplasmic tryptophanyl-tRNA synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
VPS21	YOR089C	Endosomal Rab family GTPase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
UBP2	YOR124C	Ubiquitin-specific protease	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YRM1	YOR172W	Zinc finger transcription factor involved in multidrug resistance	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ULS1	YOR191W	Swi2/Snf2-related translocase, SUMO-Targeted Ubiquitin Ligase (STUbL)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
VPS16	YPL045W	Subunit of the HOPS and the CORVET complexes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TYW1	YPL207W	Iron-sulfur protein required for synthesis of wybutosine modified tRNA	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TIF5	YPR041W	Translation initiation factor eIF5	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YPR089W	YPR089W	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TAZ1	YPR140W	Lyso-phosphatidylcholine acyltransferase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TIF3	YPR163C	Translation initiation factor eIF-4B	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YDJ1	YNL064C	Type I HSP40 co-chaperone	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SWA2	YDR320C	Auxilin-like protein involved in vesicular transport	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YAR1	YPL239W	Nucleocytoplasmic shuttling assembly chaperone	genetic	2	1	1	Positive Genetic, Positive Genetic
RPL7A	YGL076C	Ribosomal 60S subunit protein L7A	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PDS5	YMR076C	Cohesion maintenance factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BUD22	YMR014W	Protein required for rRNA maturation and ribosomal subunit biogenesis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ORC6	YHR118C	Subunit of the origin recognition complex (ORC)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SRS2	YJL092W	DNA helicase and DNA-dependent ATPase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NTO1	YPR031W	Subunit of the NuA3 histone acetyltransferase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MAP1	YLR244C	Methionine aminopeptidase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NTH1	YDR001C	Neutral trehalase, degrades trehalose	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
KCS1	YDR017C	Inositol hexakisphosphate and inositol heptakisphosphate kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
EKI1	YDR147W	Ethanolamine kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
NAT5	YOR253W	Subunit of protein N-terminal acetyltransferase NatA	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RAD34	YDR314C	Protein involved in nucleotide excision repair (NER)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SRP40	YKR092C	Nucleolar serine-rich protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ADE16	YLR028C	Enzyme of 'de novo' purine biosynthesis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SCC4	YER147C	Subunit of cohesin loading factor (Scc2p-Scc4p)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GRE3	YHR104W	Aldose reductase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SNT2	YGL131C	Subunit of Snt2C complex, RING finger ubiquitin ligase (E3)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ETR1	YBR026C	2-enoyl thioester reductase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CGI121	YML036W	Component of the EKC/KEOPS complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RAD27	YKL113C	5' to 3' exonuclease, 5' flap endonuclease	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
KAE1	YKR038C	Highly conserved ATPase of HSP70/DnaK family	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MEF1	YLR069C	Mitochondrial elongation factor involved in translational elongation	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SFB2	YNL049C	Component of the Sec23p-Sfb2p heterodimer of the COPII vesicle coat	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SAS5	YOR213C	Subunit of the SAS complex (Sas2p, Sas4p, Sas5p)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
OXP1	YKL215C	5-oxoprolinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RIM4	YHL024W	Putative RNA-binding protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PET130	YJL023C	Protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SDD3	YOL098C	Putative metalloprotease	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPL7B	YPL198W	Ribosomal 60S subunit protein L7B	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPL8A	YHL033C	Ribosomal 60S subunit protein L8A	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
OCA5	YHL029C	Cytoplasmic protein required for replication of Brome mosaic virus	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SQS1	YNL224C	Protein that stimulates the ATPase and helicase activities of Prp43p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GVP36	YIL041W	BAR domain protein that localizes to early and late Golgi vesicles	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PAL2	YHR097C	Protein involved in clathrin-mediated endocytosis	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PSP1	YDR505C	Asn and gln rich protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPL15B	YMR121C	Ribosomal 60S subunit protein L15B	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GIS1	YDR096W	Histone demethylase and transcription factor	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PNP1	YLR209C	Purine nucleoside phosphorylase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DAK1	YML070W	Dihydroxyacetone kinase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
CWC27	YPL064C	Component of a complex containing Cef1p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SPT21	YMR179W	Protein with a role in transcriptional silencing	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
HSP78	YDR258C	Oligomeric mitochondrial matrix chaperone	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
QRI1	YDL103C	UDP-N-acetylglucosamine pyrophosphorylase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
PFD1	YJL179W	Subunit of heterohexameric prefoldin	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPH1	YER169W	JmjC domain-containing histone demethylase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
MET5	YJR137C	Sulfite reductase beta subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RPS25A	YGR027C	Protein component of the small (40S) ribosomal subunit	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LAM4	YHR080C	Sterol-binding protein that localizes to puncta in the cortical ER	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SOV1	YMR066W	Mitochondrial protein of unknown function	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GLO1	YML004C	Monomeric glyoxalase I	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SAM37	YMR060C	Component of the Sorting and Assembly Machinery (SAM) complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
IFM1	YOL023W	Mitochondrial translation initiation factor 2	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GPM3	YOL056W	Nonfunctional homolog of Gpm1p phosphoglycerate mutase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
REX4	YOL080C	Putative RNA exonuclease	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GRE2	YOL151W	3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ATH1	YPR026W	Acid trehalase required for utilization of extracellular trehalose	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SFP1	YLR403W	Regulates transcription of ribosomal protein and biogenesis genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
RFX1	YLR176C	Major transcriptional repressor of DNA-damage-regulated genes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FKH2	YNL068C	Forkhead family transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPT7	YBR081C	Subunit of the SAGA transcriptional regulatory complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HCM1	YCR065W	Forkhead transcription factor	regulation	1	1	1	DNA to cDNA expression microarray evidence
CDC40	YDR364C	Pre-mRNA splicing factor	genetic	1	1	1	Synthetic Rescue
DSN1	YIR010W	Essential component of the outer kinetochore MIND complex	physical	1	1	1	Affinity Capture-MS
GWT1	YJL091C	Protein involved in the inositol acylation of GlcN-PI	genetic	1	1	1	Dosage Rescue
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	genetic	1	1	1	Negative Genetic
RPB2	YOR151C	RNA polymerase II second largest subunit B150	physical	1	1	1	Affinity Capture-MS
SDS22	YKL193C	Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p	physical	1	1	1	Affinity Capture-MS
ESA1	YOR244W	Catalytic subunit of the histone acetyltransferase complex (NuA4)	physical	1	1	1	Affinity Capture-MS
NOG1	YPL093W	Putative GTPase	physical	1	1	1	Affinity Capture-MS
RPL30	YGL030W	Ribosomal 60S subunit protein L30	physical	1	1	1	Affinity Capture-MS
RPL32	YBL092W	Ribosomal 60S subunit protein L32	physical	1	1	1	Affinity Capture-MS
RLP7	YNL002C	Nucleolar protein similar to large ribosomal subunit L7 proteins	physical	1	1	1	Affinity Capture-MS
ADH1	YOL086C	Alcohol dehydrogenase	physical	1	1	1	Affinity Capture-MS
KAP123	YER110C	Karyopherin beta	physical	1	1	1	Affinity Capture-MS
RAX2	YLR084C	Protein required for the maintenance of bud site selection	physical	1	1	1	Affinity Capture-MS
PRP19	YLL036C	Splicing factor associated with the spliceosome	physical	1	1	1	Co-purification
PRP8	YHR165C	Component of U4/U6-U5 snRNP complex	genetic	1	1	1	Dosage Rescue
BRE1	YDL074C	E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-MS
NAF1	YNL124W	RNA-binding protein required for the assembly of box H/ACA snoRNPs	physical	1	1	1	Affinity Capture-MS
RRP7	YCL031C	Essential protein involved in rRNA processing and ribosome biogenesis	physical	1	1	1	Affinity Capture-MS
NSR1	YGR159C	Nucleolin, nucleolar protein that binds nuclear localization sequences	physical	1	1	1	Affinity Capture-MS
SAP185	YJL098W	Protein that forms a complex with the Sit4p protein phosphatase	physical	1	1	1	Affinity Capture-MS
SIT4	YDL047W	Ceramide-activated, type 2A-related serine-threonine phosphatase	genetic	1	1	1	Dosage Rescue
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	physical	1	1	1	Affinity Capture-RNA
PAB1	YER165W	Poly(A) binding protein	physical	1	1	1	Affinity Capture-MS
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	physical	1	1	1	Affinity Capture-MS
RRP6	YOR001W	Nuclear exosome exonuclease component	physical	1	1	1	Affinity Capture-MS
RPB5	YBR154C	RNA polymerase subunit ABC27	genetic	1	1	1	Negative Genetic
RPL3	YOR063W	Ribosomal 60S subunit protein L3	physical	1	1	1	Affinity Capture-MS
RPL3	YOR063W	Ribosomal 60S subunit protein L3	genetic	1	1	1	Synthetic Lethality
RSC6	YCR052W	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-MS
RSC8	YFR037C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-MS
MED4	YOR174W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
SRB4	YER022W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
NAP1	YKR048C	Histone chaperone and assembly chaperone for Rps6a/b	physical	1	1	1	Affinity Capture-MS
ACT1	YFL039C	Actin, structural protein in cytoskeleton	physical	1	1	1	Affinity Capture-MS
ACT1	YFL039C	Actin, structural protein in cytoskeleton	genetic	1	1	1	Negative Genetic
IMD3	YLR432W	Inosine monophosphate dehydrogenase	physical	1	1	1	Affinity Capture-MS
PRE8	YML092C	Alpha 2 subunit of the 20S proteasome	genetic	1	1	1	Dosage Rescue
BMS1	YPL217C	GTPase required for ribosomal subunit synthesis and rRNA processing	physical	1	1	1	Affinity Capture-MS
EFT2	YDR385W	Elongation factor 2 (EF-2), also encoded by EFT1	physical	1	1	1	Affinity Capture-MS
ADE13	YLR359W	Adenylosuccinate lyase	physical	1	1	1	Affinity Capture-MS
APC1	YNL172W	Largest subunit of the Anaphase-Promoting Complex/Cyclosome	genetic	1	1	1	Positive Genetic
ARD1	YHR013C	Subunit of protein N-terminal acetyltransferase NatA	genetic	1	1	1	Dosage Rescue
BMH2	YDR099W	14-3-3 protein, minor isoform	physical	1	1	1	Affinity Capture-MS
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	physical	1	1	1	Affinity Capture-MS
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	genetic	1	1	1	Phenotypic Suppression
CDC28	YBR160W	Cyclin-dependent kinase (CDK) catalytic subunit	physical	1	1	1	Affinity Capture-MS
CDC11	YJR076C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Negative Genetic
RIX1	YHR197W	Component of the Rix1 complex and possibly pre-replicative complexes	physical	1	1	1	Affinity Capture-MS
CEG1	YGL130W	Guanylyltransferase involved in mRNA 5' capping	genetic	1	1	1	Negative Genetic
COP1	YDL145C	Alpha subunit of COPI vesicle coatomer complex	physical	1	1	1	Affinity Capture-MS
EMP24	YGL200C	Component of the p24 complex	physical	1	1	1	Affinity Capture-MS
FAP1	YNL023C	Protein that binds to Fpr1p	genetic	1	1	1	Negative Genetic
FET5	YFL041W	Multicopper oxidase	physical	1	1	1	Affinity Capture-MS
GCN1	YGL195W	Positive regulator of the Gcn2p kinase activity	physical	1	1	1	Affinity Capture-MS
GGA2	YHR108W	Protein that regulates Arf1p, Arf2p to facilitate Golgi trafficking	physical	1	1	1	Affinity Capture-MS
GLY1	YEL046C	Threonine aldolase	physical	1	1	1	Affinity Capture-MS
KRR1	YCL059C	Nucleolar protein required for rRNA synthesis and ribosomal assembly	physical	1	1	1	Affinity Capture-MS
GFA1	YKL104C	Glutamine-fructose-6-phosphate amidotransferase	physical	1	1	1	Affinity Capture-MS
MCM6	YGL201C	Protein involved in DNA replication	physical	1	1	1	Affinity Capture-MS
COG3	YER157W	Essential component of the conserved oligomeric Golgi complex	genetic	1	1	1	Negative Genetic
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	genetic	1	1	1	Synthetic Growth Defect
NHP10	YDL002C	Non-essential INO80 chromatin remodeling complex subunit	physical	1	1	1	Affinity Capture-MS
FAS2	YPL231W	Alpha subunit of fatty acid synthetase	physical	1	1	1	Affinity Capture-MS
NUP159	YIL115C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
HSP42	YDR171W	Small heat shock protein (sHSP) with chaperone activity	physical	1	1	1	Affinity Capture-MS
HSP42	YDR171W	Small heat shock protein (sHSP) with chaperone activity	genetic	1	1	1	Negative Genetic
ORC1	YML065W	Largest subunit of the origin recognition complex	physical	1	1	1	Affinity Capture-MS
PGK1	YCR012W	3-phosphoglycerate kinase	physical	1	1	1	Affinity Capture-MS
HSP82	YPL240C	Hsp90 chaperone	genetic	1	1	1	Synthetic Growth Defect
BLM10	YFL007W	Proteasome activator	physical	1	1	1	Affinity Capture-MS
PTC4	YBR125C	Cytoplasmic type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-MS
GPM1	YKL152C	Tetrameric phosphoglycerate mutase	physical	1	1	1	Affinity Capture-MS
PTI1	YGR156W	Essential component of CPF (cleavage and polyadenylation factor)	genetic	1	1	1	Negative Genetic
RFA1	YAR007C	Subunit of heterotrimeric Replication Protein A (RPA)	genetic	1	1	1	Negative Genetic
RFC2	YJR068W	Subunit of heteropentameric Replication factor C (RF-C)	genetic	1	1	1	Negative Genetic
RPB10	YOR210W	RNA polymerase subunit ABC10-beta	genetic	1	1	1	Negative Genetic
RPL2A	YFR031C-A	Ribosomal 60S subunit protein L2A	physical	1	1	1	Affinity Capture-MS
NAS6	YGR232W	Evolutionarily conserved 19S regulatory particle assembly-chaperone	genetic	1	1	1	Dosage Rescue
RET3	YPL010W	Zeta subunit of the coatomer complex (COPI)	physical	1	1	1	Affinity Capture-MS
RPP2B	YDR382W	Ribosomal protein P2 beta	physical	1	1	1	Affinity Capture-MS
ANP1	YEL036C	Subunit of the alpha-1,6 mannosyltransferase complex	physical	1	1	1	Affinity Capture-MS
MNN10	YDR245W	Subunit of a Golgi mannosyltransferase complex	physical	1	1	1	Affinity Capture-MS
ABF2	YMR072W	Mitochondrial DNA-binding protein	physical	1	1	1	Affinity Capture-Western
INP52	YNL106C	Polyphosphatidylinositol phosphatase	genetic	1	1	1	Dosage Rescue
LSB3	YFR024C-A	Protein containing a C-terminal SH3 domain	physical	1	1	1	Affinity Capture-MS
SLY1	YDR189W	Hydrophilic protein involved in ER/Golgi vesicle trafficking	genetic	1	1	1	Dosage Rescue
SIP1	YDR422C	One of three alternate beta-subunits of the Snf1p kinase complex	physical	1	1	1	Affinity Capture-MS
PFK2	YMR205C	Beta subunit of heterooctameric phosphofructokinase	physical	1	1	1	Affinity Capture-MS
RPT5	YOR117W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-MS
HFI1	YPL254W	Adaptor protein required for structural integrity of the SAGA complex	physical	1	1	1	Affinity Capture-MS
SPT20	YOL148C	Subunit of the SAGA transcriptional regulatory complex	physical	1	1	1	Affinity Capture-MS
MLP1	YKR095W	Myosin-like protein associated with the nuclear envelope	physical	1	1	1	Affinity Capture-MS
SRB6	YBR253W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
CRN1	YLR429W	Coronin	physical	1	1	1	Affinity Capture-MS
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-MS
EFB1	YAL003W	Translation elongation factor 1 beta	physical	1	1	1	Affinity Capture-MS
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	physical	1	1	1	Affinity Capture-RNA
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	genetic	1	1	1	Negative Genetic
GLN1	YPR035W	Glutamine synthetase (GS)	physical	1	1	1	Affinity Capture-MS
DRE2	YKR071C	Component of the cytosolic Fe-S protein assembly (CIA) machinery	physical	1	1	1	Affinity Capture-MS
RPT4	YOR259C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-MS
HSE1	YHL002W	Subunit of the endosomal Vps27p-Hse1p complex	physical	1	1	1	Affinity Capture-MS
BRO1	YPL084W	Cytoplasmic class E vacuolar protein sorting (VPS) factor	physical	1	1	1	Affinity Capture-MS
FLC2	YAL053W	Putative calcium channel involved in calcium release under hypotonic	physical	1	1	1	Affinity Capture-MS
LPL1	YOR059C	Phospholipase	physical	1	1	1	Affinity Capture-MS
EGD2	YHR193C	Alpha subunit of the nascent polypeptide-associated complex (NAC)	genetic	1	1	1	Synthetic Growth Defect
BBC1	YJL020C	Protein possibly involved in assembly of actin patches	physical	1	1	1	Affinity Capture-MS
FIN1	YDR130C	Spindle pole body-related intermediate filament protein	physical	1	1	1	Affinity Capture-Western
PYC2	YBR218C	Pyruvate carboxylase isoform	physical	1	1	1	Affinity Capture-MS
GND1	YHR183W	6-phosphogluconate dehydrogenase (decarboxylating)	physical	1	1	1	Affinity Capture-MS
ACH1	YBL015W	Protein with CoA transferase activity	physical	1	1	1	Affinity Capture-MS
HYP2	YEL034W	Translation elongation factor eIF-5A	physical	1	1	1	Affinity Capture-MS
CAF20	YOR276W	Phosphoprotein of the mRNA cap-binding complex	physical	1	1	1	Affinity Capture-MS
RNR2	YJL026W	Ribonucleotide-diphosphate reductase (RNR), small subunit	physical	1	1	1	Affinity Capture-MS
CPR6	YLR216C	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-MS
SER1	YOR184W	3-phosphoserine aminotransferase	physical	1	1	1	Affinity Capture-MS
RAD54	YGL163C	DNA-dependent ATPase that stimulates strand exchange	genetic	1	1	1	Negative Genetic
DPS1	YLL018C	Aspartyl-tRNA synthetase, primarily cytoplasmic	physical	1	1	1	Affinity Capture-MS
GSP1	YLR293C	Ran GTPase	physical	1	1	1	Reconstituted Complex
ARO4	YBR249C	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Affinity Capture-MS
GID7	YCL039W	Subunit of GID Complex that binds directly to central component Vid30p	physical	1	1	1	Affinity Capture-MS
EGD1	YPL037C	Subunit beta1 of the nascent polypeptide-associated complex (NAC)	physical	1	1	1	Affinity Capture-MS
EGD1	YPL037C	Subunit beta1 of the nascent polypeptide-associated complex (NAC)	genetic	1	1	1	Synthetic Growth Defect
HXT7	YDR342C	High-affinity glucose transporter	physical	1	1	1	Affinity Capture-MS
HSP104	YLL026W	Disaggregase	physical	1	1	1	Affinity Capture-MS
HSP104	YLL026W	Disaggregase	genetic	1	1	1	Dosage Rescue
AXL1	YPR122W	Haploid specific endoprotease of a-factor mating pheromone	genetic	1	1	1	Negative Genetic
PET9	YBL030C	Major ADP/ATP carrier of the mitochondrial inner membrane	genetic	1	1	1	Dosage Rescue
KRE6	YPR159W	Glucosyl hydrolase required for beta-1,6-glucan biosynthesis	physical	1	1	1	Affinity Capture-MS
ACS2	YLR153C	Acetyl-coA synthetase isoform	physical	1	1	1	Affinity Capture-MS
DUG2	YBR281C	Component of glutamine amidotransferase (GATase II)	physical	1	1	1	Affinity Capture-MS
RPN14	YGL004C	Evolutionarily conserved 19S regulatory particle assembly-chaperone	genetic	1	1	1	Dosage Rescue
SMC6	YLR383W	Subunit of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-MS
SGS1	YMR190C	RecQ family nucleolar DNA helicase	genetic	1	1	1	Positive Genetic
RSP5	YER125W	NEDD4 family E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-MS
RSP5	YER125W	NEDD4 family E3 ubiquitin ligase	genetic	1	1	1	Negative Genetic
GRS1	YBR121C	Cytoplasmic and mitochondrial glycyl-tRNA synthase	physical	1	1	1	Affinity Capture-MS
OCA1	YNL099C	Putative protein tyrosine phosphatase	genetic	1	1	1	Positive Genetic
CDC37	YDR168W	Essential Hsp90p co-chaperone	genetic	1	1	1	Negative Genetic
NUP49	YGL172W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
ERG6	YML008C	Delta(24)-sterol C-methyltransferase	physical	1	1	1	Affinity Capture-MS
NPA3	YJR072C	Member of the conserved GPN-loop GTPase family	physical	1	1	1	Affinity Capture-MS
PTC7	YHR076W	Type 2C serine/threonine protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-MS
INA1	YLR413W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
BCK2	YER167W	Serine/threonine-rich protein involved in PKC1 signaling pathway	genetic	1	1	1	Negative Genetic
CLB2	YPR119W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-MS
FZO1	YBR179C	Mitofusin, protein involved in mitochondrial outer membrane fusion	physical	1	1	1	Affinity Capture-MS
MCM4	YPR019W	Essential helicase component of heterohexameric MCM2-7 complexes	physical	1	1	1	Affinity Capture-MS
EAP1	YKL204W	eIF4E-associated protein, competes with eIF4G for binding to eIF4E	physical	1	1	1	Affinity Capture-MS
DEF1	YKL054C	RNAPII degradation factor	physical	1	1	1	Affinity Capture-MS
FMP10	YER182W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
CYS3	YAL012W	Cystathionine gamma-lyase	physical	1	1	1	Affinity Capture-MS
IGO1	YNL157W	Protein required for initiation of G0 program	physical	1	1	1	Affinity Capture-MS
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	physical	1	1	1	Affinity Capture-MS
BUD27	YFL023W	Unconventional prefoldin protein involved in translation initiation	genetic	1	1	1	Synthetic Growth Defect
NAS2	YIL007C	Evolutionarily conserved 19S regulatory particle assembly-chaperone	genetic	1	1	1	Dosage Rescue
ADE2	YOR128C	Phosphoribosylaminoimidazole carboxylase	genetic	1	1	1	Synthetic Rescue
CDC43	YGL155W	Beta subunit of geranylgeranyltransferase type I	physical	1	1	1	Affinity Capture-MS
ATG19	YOL082W	Receptor protein for the cytoplasm-to-vacuole targeting (Cvt) pathway	physical	1	1	1	Affinity Capture-MS
BIT61	YJL058C	Subunit of TORC2 membrane-associated complex	physical	1	1	1	Reconstituted Complex
GCN4	YEL009C	bZIP transcriptional activator of amino acid biosynthetic genes	genetic	1	1	1	Dosage Rescue
NDC1	YML031W	Subunit of the transmembrane ring of the nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-MS
NUP57	YGR119C	FG-nucleoporin component of central core of the nuclear pore complex	genetic	1	1	1	Negative Genetic
PPG1	YNR032W	Serine protein phosphatase involved in formation of FAR complex	genetic	1	1	1	Negative Genetic
ATG27	YJL178C	Type I membrane protein involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-MS
GNP1	YDR508C	Broad specificity amino acid permease	physical	1	1	1	Affinity Capture-MS
SLU7	YDR088C	RNA splicing factor	genetic	1	1	1	Negative Genetic
SEC10	YLR166C	Essential 100kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-MS
RBD2	YPL246C	Possible rhomboid protease	physical	1	1	1	Affinity Capture-MS
PEX14	YGL153W	Central component of the peroxisomal importomer complex	physical	1	1	1	Affinity Capture-MS
PRM9	YAR031W	Pheromone-regulated protein	physical	1	1	1	Affinity Capture-MS
NMA2	YGR010W	Nicotinic acid mononucleotide adenylyltransferase	physical	1	1	1	Affinity Capture-MS
FIS1	YIL065C	Protein involved in mitochondrial fission and peroxisome abundance	physical	1	1	1	Affinity Capture-MS
SER33	YIL074C	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	physical	1	1	1	Affinity Capture-MS
ASK10	YGR097W	Regulator of the Fps1p glycerol channel	genetic	1	1	1	Negative Genetic
RPL4A	YBR031W	Ribosomal 60S subunit protein L4A	physical	1	1	1	Affinity Capture-MS
PEX13	YLR191W	Peroxisomal importomer complex component	physical	1	1	1	Affinity Capture-MS
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS5	YJR123W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
AMD1	YML035C	AMP deaminase	physical	1	1	1	Affinity Capture-MS
CDC31	YOR257W	Calcium-binding component of the spindle pole body (SPB) half-bridge	physical	1	1	1	Affinity Capture-MS
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	physical	1	1	1	Affinity Capture-MS
RPS17A	YML024W	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	1	1	1	Affinity Capture-MS
RPS1B	YML063W	Ribosomal protein of the small (40S) subunit	physical	1	1	1	Affinity Capture-MS
RPS11B	YBR048W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS22A	YJL190C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
MIF2	YKL089W	Centromeric CDEIII region binding protein	genetic	1	1	1	Negative Genetic
BFR1	YOR198C	Component of mRNP complexes associated with polyribosomes	physical	1	1	1	Affinity Capture-RNA
BUB1	YGR188C	Protein kinase involved in the cell cycle checkpoint into anaphase	genetic	1	1	1	Negative Genetic
BUD4	YJR092W	Anillin-like protein involved in bud-site selection	genetic	1	1	1	Negative Genetic
ELO2	YCR034W	Fatty acid elongase, involved in sphingolipid biosynthesis	physical	1	1	1	Affinity Capture-MS
ELO3	YLR372W	Elongase	physical	1	1	1	Affinity Capture-MS
MCM3	YEL032W	Protein involved in DNA replication	physical	1	1	1	Affinity Capture-MS
MYO3	YKL129C	One of two type I myosins	physical	1	1	1	Affinity Capture-MS
MYO5	YMR109W	One of two type I myosin motors	physical	1	1	1	Affinity Capture-MS
NYV1	YLR093C	v-SNARE component of the vacuolar SNARE complex	physical	1	1	1	Affinity Capture-MS
SEC1	YDR164C	Sm-like protein involved in docking and fusion of exocytic vesicles	physical	1	1	1	Affinity Capture-MS
SEC20	YDR498C	Membrane glycoprotein v-SNARE	physical	1	1	1	Affinity Capture-MS
ERV41	YML067C	Protein localized to COPII-coated vesicles	physical	1	1	1	Affinity Capture-MS
SEC22	YLR268W	R-SNARE protein	genetic	1	1	1	Negative Genetic
PAM18	YLR008C	Subunit of the import motor (PAM complex)	physical	1	1	1	Affinity Capture-Western
SEC5	YDR166C	Essential 107kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-MS
SPC110	YDR356W	Inner plaque spindle pole body (SPB) component	physical	1	1	1	Co-purification
HSF1	YGL073W	Trimeric heat shock transcription factor	physical	1	1	1	Affinity Capture-Western
KAR2	YJL034W	ATPase involved in protein import into the ER	physical	1	1	1	Affinity Capture-MS
MPT5	YGL178W	mRNA-binding protein of the PUF family	physical	1	1	1	Affinity Capture-RNA
CSG2	YBR036C	Endoplasmic reticulum membrane protein	genetic	1	1	1	Negative Genetic
SEC2	YNL272C	Guanyl-nucleotide exchange factor for the small G-protein Sec4p	genetic	1	1	1	Negative Genetic
ABF1	YKL112W	DNA binding protein with possible chromatin-reorganizing activity	physical	1	1	1	Affinity Capture-MS
CCS1	YMR038C	Copper chaperone for superoxide dismutase Sod1p	physical	1	1	1	Affinity Capture-MS
MCM7	YBR202W	Component of the Mcm2-7 hexameric helicase complex	physical	1	1	1	Affinity Capture-MS
ERG25	YGR060W	C-4 methyl sterol oxidase	physical	1	1	1	Affinity Capture-MS
ESC1	YMR219W	Protein involved in telomeric silencing	physical	1	1	1	Affinity Capture-MS
JEM1	YJL073W	DnaJ-like chaperone required for nuclear membrane fusion during mating	physical	1	1	1	Affinity Capture-MS
INP53	YOR109W	Polyphosphatidylinositol phosphatase	genetic	1	1	1	Dosage Rescue
GAD1	YMR250W	Glutamate decarboxylase	physical	1	1	1	Affinity Capture-MS
MET28	YIR017C	bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex	genetic	1	1	1	Negative Genetic
MID2	YLR332W	O-glycosylated plasma membrane protein	physical	1	1	1	Two-hybrid
PDR5	YOR153W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
OTU1	YFL044C	Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p	physical	1	1	1	Affinity Capture-MS
SIP3	YNL257C	Putative sterol transfer protein	physical	1	1	1	Affinity Capture-MS
ATP1	YBL099W	Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase	genetic	1	1	1	Dosage Rescue
DFG5	YMR238W	Putative mannosidase	physical	1	1	1	Affinity Capture-MS
NCP1	YHR042W	NADP-cytochrome P450 reductase	physical	1	1	1	Affinity Capture-MS
RPL25	YOL127W	Ribosomal 60S subunit protein L25	physical	1	1	1	Affinity Capture-MS
RPL31A	YDL075W	Ribosomal 60S subunit protein L31A	physical	1	1	1	Affinity Capture-MS
ERV29	YGR284C	Protein localized to COPII-coated vesicles	physical	1	1	1	Affinity Capture-MS
HOC1	YJR075W	Alpha-1,6-mannosyltransferase	physical	1	1	1	Affinity Capture-MS
HOC1	YJR075W	Alpha-1,6-mannosyltransferase	genetic	1	1	1	Negative Genetic
MNN11	YJL183W	Subunit of a Golgi mannosyltransferase complex	physical	1	1	1	Affinity Capture-MS
PMT4	YJR143C	Protein O-mannosyltransferase	physical	1	1	1	Affinity Capture-MS
PXA1	YPL147W	Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa2p	physical	1	1	1	Affinity Capture-MS
RPS2	YGL123W	Protein component of the small (40S) subunit	physical	1	1	1	Affinity Capture-MS
ASN1	YPR145W	Asparagine synthetase	physical	1	1	1	Affinity Capture-MS
MID1	YNL291C	Stretch-activated Ca2+-permeable cation channel	physical	1	1	1	Affinity Capture-MS
ERV14	YGL054C	COPII-coated vesicle protein	physical	1	1	1	Affinity Capture-MS
PDR12	YPL058C	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
YAF9	YNL107W	Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes	physical	1	1	1	Affinity Capture-MS
SUP35	YDR172W	Translation termination factor eRF3	genetic	1	1	1	Phenotypic Enhancement
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-MS
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	genetic	1	1	1	Dosage Lethality
TIF6	YPR016C	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-MS
SSZ1	YHR064C	Hsp70 protein that interacts with Zuo1p (a DnaJ homolog)	genetic	1	1	1	Dosage Rescue
UBP3	YER151C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-MS
SWH1	YAR042W	Protein similar to mammalian oxysterol-binding protein	physical	1	1	1	Affinity Capture-MS
YBR287W	YBR287W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YCR043C	YCR043C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
TSC13	YDL015C	Enoyl reductase	physical	1	1	1	Affinity Capture-MS
YET3	YDL072C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YDL206W	YDL206W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
VPS54	YDR027C	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-MS
YPQ2	YDR352W	Putative vacuolar membrane transporter for cationic amino acids	physical	1	1	1	Affinity Capture-MS
TRS120	YDR407C	Component of transport protein particle (TRAPP) complex II	physical	1	1	1	Affinity Capture-MS
VPS52	YDR484W	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-MS
YEF1	YEL041W	ATP-NADH kinase	physical	1	1	1	Affinity Capture-MS
YEL077C	YEL077C	Helicase-like protein encoded within the telomeric Y' element	physical	1	1	1	Affinity Capture-MS
TSC11	YER093C	Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p)	physical	1	1	1	Affinity Capture-MS
VTC2	YFL004W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Affinity Capture-MS
VAM7	YGL212W	Vacuolar SNARE protein	physical	1	1	1	Affinity Capture-MS
TRS65	YGR166W	Component of transport protein particle (TRAPP) complex II	physical	1	1	1	Affinity Capture-MS
YHL026C	YHL026C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
TOM71	YHR117W	Mitochondrial outer membrane protein	physical	1	1	1	Affinity Capture-MS
SYG1	YIL047C	Plasma membrane protein of unknown function	physical	1	1	1	Affinity Capture-MS
TOK1	YJL093C	Outward-rectifier potassium channel of the plasma membrane	physical	1	1	1	Affinity Capture-MS
VPS35	YJL154C	Endosomal subunit of membrane-associated retromer complex	physical	1	1	1	Affinity Capture-MS
VPS70	YJR126C	Protein of unknown function involved in vacuolar protein sorting	physical	1	1	1	Affinity Capture-MS
VBA5	YKR105C	Plasma membrane protein of the Major Facilitator Superfamily (MFS)	physical	1	1	1	Affinity Capture-MS
YEH1	YLL012W	Steryl ester hydrolase	physical	1	1	1	Affinity Capture-MS
YLR001C	YLR001C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
THI73	YLR004C	Putative plasma membrane permease	physical	1	1	1	Affinity Capture-MS
YML002W	YML002W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
UBX2	YML013W	Bridging factor involved in ER-associated protein degradation (ERAD)	physical	1	1	1	Affinity Capture-MS
YMD8	YML038C	Putative nucleotide sugar transporter	physical	1	1	1	Affinity Capture-MS
VPS9	YML097C	Guanine nucleotide exchange factor (GEF) and ubiquitin receptor	physical	1	1	1	Affinity Capture-MS
STV1	YMR054W	Subunit a of the vacuolar-ATPase V0 domain	physical	1	1	1	Affinity Capture-MS
SWP1	YMR149W	Delta subunit of the oligosaccharyl transferase glycoprotein complex	physical	1	1	1	Affinity Capture-MS
TRS130	YMR218C	Component of transport protein particle (TRAPP) complex II	physical	1	1	1	Affinity Capture-MS
YHM2	YMR241W	Citrate and oxoglutarate carrier protein	physical	1	1	1	Affinity Capture-MS
TCB2	YNL087W	ER protein involved in ER-plasma membrane tethering	physical	1	1	1	Affinity Capture-MS
YNR048W	YNR048W	Potential noncatalytic subunit for phospholipid translocase Dnf3p	physical	1	1	1	Affinity Capture-MS
YOL075C	YOL075C	Putative ABC transporter	physical	1	1	1	Affinity Capture-MS
VTC3	YPL019C	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Affinity Capture-MS
YIG1	YPL201C	Protein that interacts with glycerol 3-phosphatase	physical	1	1	1	Affinity Capture-MS
YOP1	YPR028W	Reticulon-interacting protein	physical	1	1	1	Affinity Capture-MS
YPR114W	YPR114W	Protein distantly similar to ceramide synthases, Lag1p and Lac1p	physical	1	1	1	Affinity Capture-MS
TPO3	YPR156C	Polyamine transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-MS
TFB4	YPR056W	Subunit of TFIIH complex	physical	1	1	1	Affinity Capture-MS
YKR104W	YKR104W	Putative transporter of the MRP subfamily	physical	1	1	1	PCA
UBP13	YBL067C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-MS
ZUO1	YGR285C	Ribosome-associated chaperone	physical	1	1	1	Reconstituted Complex
SSC1	YJR045C	Hsp70 family ATPase	physical	1	1	1	Affinity Capture-MS
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	physical	1	1	1	Affinity Capture-MS
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	genetic	1	1	1	Dosage Rescue
TIF2	YJL138C	Translation initiation factor eIF4A	physical	1	1	1	Affinity Capture-MS
YEF3	YLR249W	Translation elongation factor 3	physical	1	1	1	Affinity Capture-MS
TEF4	YKL081W	Gamma subunit of translational elongation factor eEF1B	physical	1	1	1	Affinity Capture-MS
STM1	YLR150W	Protein required for optimal translation under nutrient stress	physical	1	1	1	Affinity Capture-MS
TRX1	YLR043C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Affinity Capture-MS
TRR1	YDR353W	Cytoplasmic thioredoxin reductase	physical	1	1	1	Affinity Capture-MS
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	physical	1	1	1	Affinity Capture-MS
TSL1	YML100W	Large subunit of trehalose 6-phosphate synthase/phosphatase complex	physical	1	1	1	Affinity Capture-MS
TPS1	YBR126C	Synthase subunit of trehalose-6-P synthase/phosphatase complex	physical	1	1	1	Affinity Capture-MS
TPS2	YDR074W	Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex	physical	1	1	1	Affinity Capture-MS
TKL1	YPR074C	Transketolase	physical	1	1	1	Affinity Capture-MS
TRP5	YGL026C	Tryptophan synthase	physical	1	1	1	Affinity Capture-MS
URA7	YBL039C	Major CTP synthase isozyme (see also URA8)	physical	1	1	1	Affinity Capture-MS
TUB1	YML085C	Alpha-tubulin	physical	1	1	1	Affinity Capture-MS
ZEO1	YOL109W	Peripheral membrane protein of the plasma membrane	physical	1	1	1	Affinity Capture-MS
VID24	YBR105C	GID Complex regulatory subunit	physical	1	1	1	Affinity Capture-MS
ULP2	YIL031W	Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins	physical	1	1	1	Affinity Capture-MS
TIM23	YNR017W	Essential component of the TIM23 complex	physical	1	1	1	Affinity Capture-Western
TOM22	YNL131W	Component of the TOM (Translocase of Outer Membrane) complex	physical	1	1	1	Affinity Capture-MS
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	1	1	1	Affinity Capture-MS
TIM18	YOR297C	Component of the mitochondrial TIM22 complex	genetic	1	1	1	Dosage Rescue
YMR1	YJR110W	Phosphatidylinositol 3-phosphate (PI3P) phosphatase	genetic	1	1	1	Dosage Rescue
UBX4	YMR067C	UBX domain-containing protein that interacts with Cdc48p	genetic	1	1	1	Negative Genetic
YRB1	YDR002W	Ran GTPase binding protein	genetic	1	1	1	Negative Genetic
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	genetic	1	1	1	Phenotypic Enhancement
TEL2	YGR099W	Subunit of the ASTRA complex, involved in chromatin remodeling	genetic	1	1	1	Negative Genetic
VPS53	YJL029C	Component of the GARP (Golgi-associated retrograde protein) complex	genetic	1	1	1	Negative Genetic
YNL058C	YNL058C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
VPS30	YPL120W	Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II	genetic	1	1	1	Negative Genetic
TCA17	YEL048C	Component of transport protein particle (TRAPP) complex II	genetic	1	1	1	Negative Genetic
UBP11	YKR098C	Ubiquitin-specific protease	genetic	1	1	1	Negative Genetic
TEF1	YPR080W	Translational elongation factor EF-1 alpha	genetic	1	1	1	Negative Genetic
TOM70	YNL121C	Component of the TOM (translocase of outer membrane) complex	genetic	1	1	1	Dosage Rescue
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	physical	1	1	1	Affinity Capture-MS
RRS1	YOR294W	Essential protein that binds ribosomal protein L11	genetic	1	1	1	Negative Genetic
RPS14A	YCR031C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPL13A	YDL082W	Ribosomal 60S subunit protein L13A	physical	1	1	1	Affinity Capture-MS
RPL14B	YHL001W	Ribosomal 60S subunit protein L14B	physical	1	1	1	Affinity Capture-MS
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	physical	1	1	1	Affinity Capture-MS
RPL19B	YBL027W	Ribosomal 60S subunit protein L19B	physical	1	1	1	Affinity Capture-MS
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	physical	1	1	1	Affinity Capture-MS
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	physical	1	1	1	Affinity Capture-MS
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	physical	1	1	1	Affinity Capture-MS
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	genetic	1	1	1	Negative Genetic
ASN2	YGR124W	Asparagine synthetase	physical	1	1	1	Affinity Capture-MS
RTN1	YDR233C	Reticulon protein	physical	1	1	1	Affinity Capture-MS
ORM2	YLR350W	Protein that mediates sphingolipid homeostasis	physical	1	1	1	Affinity Capture-MS
MRC1	YCL061C	S-phase checkpoint protein required for DNA replication	physical	1	1	1	Affinity Capture-MS
SPT23	YKL020C	ER membrane protein involved in regulation of OLE1 transcription	physical	1	1	1	Affinity Capture-MS
RPL36B	YPL249C-A	Ribosomal 60S subunit protein L36B	physical	1	1	1	Affinity Capture-MS
APM2	YHL019C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
PDR11	YIL013C	ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
CST26	YBR042C	Acyltransferase	physical	1	1	1	Affinity Capture-MS
PSG1	YKL077W	Protein that promotes the transport and maturation of Pma1 with Exp1	physical	1	1	1	Affinity Capture-MS
ERG2	YMR202W	C-8 sterol isomerase	physical	1	1	1	Affinity Capture-MS
ANT1	YPR128C	Peroxisomal adenine nucleotide transporter	physical	1	1	1	Affinity Capture-MS
DIC1	YLR348C	Mitochondrial dicarboxylate carrier	physical	1	1	1	Affinity Capture-MS
BTT1	YDR252W	Heterotrimeric nascent polypeptide-associated complex beta3 subunit	genetic	1	1	1	Synthetic Growth Defect
MET17	YLR303W	O-acetyl homoserine-O-acetyl serine sulfhydrylase	physical	1	1	1	Affinity Capture-MS
GLK1	YCL040W	Glucokinase	physical	1	1	1	Affinity Capture-MS
LYS20	YDL182W	Homocitrate synthase isozyme and functions in DNA repair	physical	1	1	1	Affinity Capture-MS
MBA1	YBR185C	Membrane-associated mitochondrial ribosome receptor	physical	1	1	1	Affinity Capture-MS
HRQ1	YDR291W	3'-5' DNA helicase of the conserved RecQ family	genetic	1	1	1	Positive Genetic
SLF1	YDR515W	RNA binding protein that associates with polysomes	physical	1	1	1	Affinity Capture-RNA
FPR2	YDR519W	Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase)	physical	1	1	1	Affinity Capture-MS
IRC22	YEL001C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
CAB4	YGR277C	Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC)	physical	1	1	1	Affinity Capture-MS
INA22	YIR024C	F1F0 ATP synthase peripheral stalk assembly factor	physical	1	1	1	Affinity Capture-MS
ALD6	YPL061W	Cytosolic aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-MS
RPP1A	YDL081C	Ribosomal stalk protein P1 alpha	genetic	1	1	1	Negative Genetic
RAD27	YKL113C	5' to 3' exonuclease, 5' flap endonuclease	genetic	1	1	1	Negative Genetic
PDR15	YDR406W	Plasma membrane ATP binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
POC4	YPL144W	Component of a heterodimeric Poc4p-Irc25p chaperone	genetic	1	1	1	Dosage Rescue
CUZ1	YNL155W	Protein with a role in the ubiquitin-proteasome pathway	genetic	1	1	1	Negative Genetic
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	physical	1	1	1	Affinity Capture-MS
SHM2	YLR058C	Cytosolic serine hydroxymethyltransferase	physical	1	1	1	Affinity Capture-MS
GLN4	YOR168W	Glutamine tRNA synthetase	genetic	1	1	1	Negative Genetic
POM33	YLL023C	Transmembrane nucleoporin	physical	1	1	1	Affinity Capture-MS
FAS1	YKL182W	Beta subunit of fatty acid synthetase	physical	1	1	1	Affinity Capture-MS
MCY1	YGR012W	Putative cysteine synthase	physical	1	1	1	Affinity Capture-MS
RPS6A	YPL090C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
PST1	YDR055W	Cell wall protein that contains a putative GPI-attachment site	physical	1	1	1	Affinity Capture-MS
CWH41	YGL027C	Processing alpha glucosidase I	physical	1	1	1	Affinity Capture-MS
RPS9A	YPL081W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
PSA1	YDL055C	GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)	physical	1	1	1	Affinity Capture-MS
PHB2	YGR231C	Subunit of the prohibitin complex (Phb1p-Phb2p)	physical	1	1	1	Affinity Capture-MS
RPL24A	YGL031C	Ribosomal 60S subunit protein L24A	physical	1	1	1	Affinity Capture-MS
SND1	YDR186C	Protein involved in SRP-independent targeting of substrates to the ER	physical	1	1	1	Affinity Capture-MS
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS14B	YJL191W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPL19A	YBR084C-A	Ribosomal 60S subunit protein L19A	physical	1	1	1	Affinity Capture-Western
RPL35A	YDL191W	Ribosomal 60S subunit protein L35A	physical	1	1	1	Affinity Capture-Western
RTT107	YHR154W	BRCA1 C-terminal domain protein needed for recovery from DNA damage	physical	1	1	1	Affinity Capture-MS
ARO2	YGL148W	Bifunctional chorismate synthase and flavin reductase	physical	1	1	1	Affinity Capture-MS
GUA1	YMR217W	GMP synthase	physical	1	1	1	Affinity Capture-MS
RPL35B	YDL136W	Ribosomal 60S subunit protein L35B	physical	1	1	1	Affinity Capture-MS
RPL26A	YLR344W	Ribosomal 60S subunit protein L26A	physical	1	1	1	Affinity Capture-MS
RPL26B	YGR034W	Ribosomal 60S subunit protein L26B	physical	1	1	1	Affinity Capture-MS
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS19B	YNL302C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS19A	YOL121C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
DGA1	YOR245C	Diacylglycerol acyltransferase	physical	1	1	1	Affinity Capture-MS
PHO90	YJL198W	Low-affinity phosphate transporter	physical	1	1	1	Affinity Capture-MS
PHO91	YNR013C	Low-affinity vacuolar phosphate transporter	physical	1	1	1	Affinity Capture-MS
MDG1	YNL173C	Plasma membrane protein	physical	1	1	1	Affinity Capture-MS
PUF2	YPR042C	PUF family mRNA-binding protein	physical	1	1	1	Affinity Capture-RNA
SCH9	YHR205W	AGC family protein kinase	physical	1	1	1	Affinity Capture-Western
SCH9	YHR205W	AGC family protein kinase	genetic	1	1	1	Phenotypic Suppression
RCI37	YIL077C	Protein that associates with the large mitoribosomal subunit	physical	1	1	1	Affinity Capture-MS
LOA1	YPR139C	Lysophosphatidic acid acyltransferase	physical	1	1	1	Affinity Capture-MS
MIC26	YGR235C	Component of the MICOS complex	physical	1	1	1	Affinity Capture-MS
PNT1	YOR266W	Mitochondrial integral inner membrane protein	physical	1	1	1	Affinity Capture-MS
ERG24	YNL280C	C-14 sterol reductase	physical	1	1	1	Affinity Capture-MS
PAN5	YHR063C	2-dehydropantoate 2-reductase	physical	1	1	1	Affinity Capture-MS
SCD6	YPR129W	Repressor of translation initiation	physical	1	1	1	Affinity Capture-MS
SGE1	YPR198W	Plasma membrane multidrug transporter	physical	1	1	1	Affinity Capture-MS
MTM1	YGR257C	Mitochondrial protein of the mitochondrial carrier family	physical	1	1	1	Affinity Capture-MS
RPS27B	YHR021C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
RPS27A	YKL156W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
MNN2	YBR015C	Alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-MS
ALO1	YML086C	D-Arabinono-1,4-lactone oxidase	genetic	1	1	1	Negative Genetic
COX11	YPL132W	Protein required for delivery of copper to Cox1p	physical	1	1	1	Affinity Capture-MS
PNC1	YGL037C	Nicotinamidase that converts nicotinamide to nicotinic acid	physical	1	1	1	Affinity Capture-MS
CYC2	YOR037W	Mitochondrial peripheral inner membrane protein	physical	1	1	1	Affinity Capture-MS
RPL31B	YLR406C	Ribosomal 60S subunit protein L31B	physical	1	1	1	Affinity Capture-MS
RPS16B	YDL083C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
HXT1	YHR094C	Low-affinity glucose transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-MS
SNQ2	YDR011W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-MS
ERG4	YGL012W	C-24(28) sterol reductase	physical	1	1	1	Affinity Capture-MS
MUP1	YGR055W	High affinity methionine permease	physical	1	1	1	Affinity Capture-MS
BAP2	YBR068C	High-affinity leucine permease	physical	1	1	1	Affinity Capture-MS
SHR3	YDL212W	Endoplasmic reticulum packaging chaperone	physical	1	1	1	Affinity Capture-MS
DPP1	YDR284C	Diacylglycerol pyrophosphate (DGPP) phosphatase	physical	1	1	1	Affinity Capture-MS
MDM32	YOR147W	Mitochondrial inner membrane protein with similarity to Mdm31p	physical	1	1	1	Affinity Capture-MS
CGR1	YGL029W	Protein involved in nucleolar integrity and processing of pre-rRNA	genetic	1	1	1	Negative Genetic
LYP1	YNL268W	Lysine permease	physical	1	1	1	Affinity Capture-MS
DCW1	YKL046C	Putative mannosidase	physical	1	1	1	Affinity Capture-MS
OAC1	YKL120W	Mitochondrial inner membrane transporter	physical	1	1	1	Affinity Capture-MS
GPI13	YLL031C	ER membrane localized phosphoryltransferase	physical	1	1	1	Affinity Capture-MS
CCW12	YLR110C	Cell wall mannoprotein	physical	1	1	1	Affinity Capture-MS
MOT3	YMR070W	Transcriptional repressor, activator	genetic	1	1	1	Negative Genetic
RPL39	YJL189W	Ribosomal 60S subunit protein L39	physical	1	1	1	Affinity Capture-Western
GRX2	YDR513W	Cytoplasmic glutaredoxin	physical	1	1	1	Affinity Capture-MS
FKS3	YMR306W	Protein involved in spore wall assembly	physical	1	1	1	Affinity Capture-MS
ELO1	YJL196C	Elongase I, medium-chain acyl elongase	physical	1	1	1	Affinity Capture-MS
COX9	YDL067C	Subunit VIIa of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-MS
OPT1	YJL212C	Proton-coupled oligopeptide transporter of the plasma membrane	physical	1	1	1	Affinity Capture-MS
RPL12B	YDR418W	Ribosomal 60S subunit protein L12B	physical	1	1	1	Affinity Capture-MS
CBP4	YGR174C	Mitochondrial protein required for assembly of cytochrome bc1 complex	physical	1	1	1	Affinity Capture-MS
MPC2	YHR162W	Highly conserved subunit of the mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Affinity Capture-MS
ERG12	YMR208W	Mevalonate kinase	physical	1	1	1	Affinity Capture-MS
KEI1	YDR367W	Component of inositol phosphorylceramide (IPC) synthase	physical	1	1	1	Affinity Capture-MS
LDS2	YOL047C	Protein Involved in spore wall assembly	physical	1	1	1	Affinity Capture-MS
IRC15	YPL017C	Microtubule associated protein	physical	1	1	1	Affinity Capture-MS
NMA111	YNL123W	Serine protease and general molecular chaperone	physical	1	1	1	Affinity Capture-MS
GAS2	YLR343W	1,3-beta-glucanosyltransferase	physical	1	1	1	Affinity Capture-MS
PIC2	YER053C	Mitochondrial copper and phosphate carrier	physical	1	1	1	Affinity Capture-MS
PMP1	YCR024C-A	Regulatory subunit for the plasma membrane H(+)-ATPase Pma1p	physical	1	1	1	Affinity Capture-MS
MNN1	YER001W	Alpha-1,3-mannosyltransferase	physical	1	1	1	Affinity Capture-MS
DGK1	YOR311C	Diacylglycerol kinase	physical	1	1	1	Affinity Capture-MS
PER1	YCR044C	Protein of the endoplasmic reticulum	physical	1	1	1	Affinity Capture-MS
MMM1	YLL006W	ER integral membrane protein, ERMES complex subunit	physical	1	1	1	Affinity Capture-MS
SEC72	YLR292C	Non-essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-MS
NFT1	YKR103W	Putative transporter of the MRP subfamily	physical	1	1	1	PCA
SPC3	YLR066W	Subunit of signal peptidase complex	physical	1	1	1	Affinity Capture-MS
SPT6	YGR116W	Nucleosome remodeling protein	physical	1	1	1	Affinity Capture-MS
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
SPE1	YKL184W	Ornithine decarboxylase	genetic	1	1	1	Negative Genetic
ENV9	YOR246C	Conserved oxidoreductase involved in lipid droplet morphology	physical	1	1	1	Affinity Capture-MS
MGR2	YPL098C	Subunit of the TIM23 translocase complex	genetic	1	1	1	Dosage Rescue
RTT105	YER104W	Chaperone for Replication Protein A complex (RPA)	physical	1	1	1	Affinity Capture-MS
SOM1	YEL059C-A	Subunit of the mitochondrial inner membrane peptidase (IMP)	physical	1	1	1	Affinity Capture-MS
LCL3	YGL085W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
MSH1	YHR120W	DNA-binding protein of the mitochondria	physical	1	1	1	Affinity Capture-MS
MNT3	YIL014W	Alpha-1,3-mannosyltransferase	physical	1	1	1	Affinity Capture-MS
PAN6	YIL145C	Pantothenate synthase	physical	1	1	1	Affinity Capture-MS
SFC1	YJR095W	Mitochondrial succinate-fumarate transporter	physical	1	1	1	Affinity Capture-MS
SLS1	YLR139C	Mitochondrial membrane protein	physical	1	1	1	Affinity Capture-MS
PDR18	YNR070W	Transporter of the ATP-binding cassette (ABC) family	physical	1	1	1	Affinity Capture-MS
RKR1	YMR247C	RING domain E3 ubiquitin ligase	genetic	1	1	1	Synthetic Rescue
AIM9	YER080W	Protein of unknown function	genetic	1	1	1	Negative Genetic
RML2	YEL050C	Mitochondrial ribosomal protein of the large subunit (L2)	genetic	1	1	1	Negative Genetic