GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
RPN8	YOR261C	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	38	8	32	Two-hybrid, Two-hybrid, Two-hybrid, Affinity Capture-MS, Affinity Capture-MS, PCA, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Co-crystal Structure, Co-crystal Structure, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-purification, Co-purification, Co-fractionation, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Co-crystal Structure, Co-purification, Affinity Capture-Western, Reconstituted Complex
RPN5	YDL147W	Subunit of the CSN and 26S proteasome lid complexes	physical	34	7	30	Affinity Capture-MS, Two-hybrid, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, PCA, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-purification, Affinity Capture-Western, Co-purification, PCA, Co-fractionation, Affinity Capture-MS, Reconstituted Complex, Co-purification, Affinity Capture-Western
RPN10	YHR200W	Proteasome polyubiquitin receptor	physical	33	5	26	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-fractionation, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex, Co-purification
RPN12	YFR052W	Subunit of the 19S regulatory particle of the 26S proteasome lid	physical	29	5	23	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-purification, Affinity Capture-Western, Co-fractionation, Affinity Capture-MS, Reconstituted Complex, Co-purification, Reconstituted Complex
RPT1	YKL145W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	28	5	23	Affinity Capture-MS, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-purification, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-fractionation, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Co-purification, Affinity Capture-Western, Reconstituted Complex
RPN6	YDL097C	Essential, non-ATPase regulatory subunit of the 26S proteasome lid	physical	27	4	24	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-purification, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-Western, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Reconstituted Complex, Co-purification
RPN1	YHR027C	Non-ATPase base subunit of the 19S RP of the 26S proteasome	physical	24	5	20	Affinity Capture-MS, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-fractionation, Affinity Capture-MS, Reconstituted Complex, Co-purification
RPT5	YOR117W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	23	5	22	Affinity Capture-Western, Affinity Capture-MS, Co-fractionation, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Co-purification, Reconstituted Complex
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	23	4	22	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Co-purification, Affinity Capture-Western
RPN3	YER021W	Essential non-ATPase regulatory subunit of the 26S proteasome lid	physical	23	4	22	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-purification, Affinity Capture-MS, Reconstituted Complex, Co-purification
RPN9	YDR427W	Non-ATPase regulatory subunit of the 26S proteasome	physical	22	5	21	Two-hybrid, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-purification, Affinity Capture-MS, Reconstituted Complex, Co-purification
RPN7	YPR108W	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	21	4	20	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-purification, Affinity Capture-MS, Reconstituted Complex, Co-purification
RPT3	YDR394W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	20	4	19	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Co-purification
RPN2	YIL075C	Subunit of the 26S proteasome	physical	20	5	18	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-fractionation, Affinity Capture-MS, Reconstituted Complex, Co-purification
RPT2	YDL007W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	19	5	18	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Co-fractionation, Affinity Capture-MS, Reconstituted Complex, Co-purification
UBP6	YFR010W	Ubiquitin-specific protease	physical	18	4	18	Affinity Capture-MS, Co-purification, Co-purification, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS
RPT4	YOR259C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	18	4	17	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex, Reconstituted Complex, Co-purification
PRE10	YOR362C	Alpha 7 subunit of the 20S proteasome	physical	13	4	11	Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification
PRE1	YER012W	Beta 4 subunit of the 20S proteasome	physical	12	3	12	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Co-purification, Affinity Capture-MS
SEM1	YDR363W-A	19S proteasome regulatory particle lid subcomplex component	physical	12	3	10	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification
UBI4	YLL039C	Ubiquitin	physical	11	5	9	Affinity Capture-Western, Biochemical Activity, Affinity Capture-MS, Affinity Capture-MS, Co-purification, Affinity Capture-MS, Biochemical Activity, Co-crystal Structure, Biochemical Activity, Biochemical Activity, Biochemical Activity
RAD23	YEL037C	Protein with ubiquitin-like N terminus	physical	10	2	10	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
SCL1	YGL011C	Alpha 1 subunit of the 20S proteasome	physical	10	4	8	Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification, Affinity Capture-MS
PRE5	YMR314W	Alpha 6 subunit of the 20S proteasome	physical	10	4	8	Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification, Affinity Capture-MS
PRE6	YOL038W	Alpha 4 subunit of the 20S proteasome	physical	10	4	8	Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification, Affinity Capture-MS
PRE8	YML092C	Alpha 2 subunit of the 20S proteasome	physical	10	4	8	Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification
PRE9	YGR135W	Alpha 3 subunit of the 20S proteasome	physical	10	4	8	Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification, Affinity Capture-MS
PUP2	YGR253C	Alpha 5 subunit of the 20S proteasome	physical	10	4	8	Affinity Capture-Western, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification, Affinity Capture-MS
RPN13	YLR421C	Subunit of the 19S regulatory particle of the 26S proteasome lid	physical	9	4	9	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS
PRE4	YFR050C	Beta 7 subunit of the 20S proteasome	physical	9	3	9	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification, Affinity Capture-MS, Affinity Capture-Western
NAS6	YGR232W	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	9	3	6	Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex
ECM29	YHL030W	Scaffold protein	physical	9	2	6	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western
PUP1	YOR157C	Beta 2 subunit of the 20S proteasome	physical	8	3	8	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Co-purification
DSK2	YMR276W	Nuclear-enriched ubiquitin-like polyubiquitin-binding protein	physical	8	3	7	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-Western
PRE2	YPR103W	Beta 5 subunit of the 20S proteasome	physical	7	3	7	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification
PRE3	YJL001W	Beta 1 subunit of the 20S proteasome	physical	7	3	7	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification
PRE7	YBL041W	Beta 6 subunit of the 20S proteasome	physical	7	3	7	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-purification, Affinity Capture-MS
PUP3	YER094C	Beta 3 subunit of the 20S proteasome	physical	7	3	7	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Co-purification
PRE9	YGR135W	Alpha 3 subunit of the 20S proteasome	genetic	6	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
FKH1	YIL131C	Forkhead family transcription factor	regulation	5	2	5	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence, chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence
RPN10	YHR200W	Proteasome polyubiquitin receptor	genetic	5	2	4	Negative Genetic, Negative Genetic, Negative Genetic, Synthetic Growth Defect, Negative Genetic
RPN14	YGL004C	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	5	2	4	Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western
RPN11	YFR004W	Metalloprotease subunit of 19S regulatory particle	physical	4	3	4	Affinity Capture-MS, Affinity Capture-MS, Co-crystal Structure, Co-purification
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	physical	4	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	4	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-purification
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	physical	4	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
URA7	YBL039C	Major CTP synthase isozyme (see also URA8)	physical	4	1	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	physical	4	1	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPN8	YOR261C	Essential non-ATPase regulatory subunit of the 26S proteasome	genetic	4	3	3	Phenotypic Suppression, Positive Genetic, Positive Genetic, Negative Genetic
RAD51	YER095W	Strand exchange protein	genetic	4	2	3	Negative Genetic, Synthetic Lethality, Negative Genetic, Negative Genetic
CTF4	YPR135W	Chromatin-associated protein	genetic	4	2	3	Negative Genetic, Synthetic Lethality, Negative Genetic, Negative Genetic
SEC66	YBR171W	Non-essential subunit of Sec63 complex	genetic	4	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	4	2	2	Positive Genetic, Positive Genetic, Negative Genetic, Negative Genetic
RPT3	YDR394W	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	4	2	2	Positive Genetic, Positive Genetic, Negative Genetic, Negative Genetic
RPN5	YDL147W	Subunit of the CSN and 26S proteasome lid complexes	genetic	4	2	2	Positive Genetic, Positive Genetic, Negative Genetic, Negative Genetic
RPT1	YKL145W	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	4	2	2	Positive Genetic, Positive Genetic, Negative Genetic, Negative Genetic
CHL1	YPL008W	Probable DNA helicase	genetic	4	2	2	Synthetic Lethality, Synthetic Lethality, Negative Genetic, Negative Genetic
SCL1	YGL011C	Alpha 1 subunit of the 20S proteasome	genetic	4	1	2	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
PRE10	YOR362C	Alpha 7 subunit of the 20S proteasome	genetic	4	1	2	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
CDC73	YLR418C	Component of the Paf1p complex	genetic	3	2	3	Negative Genetic, Synthetic Lethality, Negative Genetic
SEC18	YBR080C	AAA ATPase and SNARE disassembly chaperone	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
RUB1	YDR139C	Ubiquitin-like protein with similarity to mammalian NEDD8	genetic	3	2	3	Negative Genetic, Negative Genetic, Synthetic Growth Defect
DDI1	YER143W	Aspartic-type endopeptidase	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western
MAD1	YGL086W	Coiled-coil protein involved in spindle-assembly checkpoint	genetic	3	2	3	Negative Genetic, Synthetic Lethality, Negative Genetic
ADH1	YOL086C	Alcohol dehydrogenase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
KAP123	YER110C	Karyopherin beta	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
BMH1	YER177W	14-3-3 protein, major isoform	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PAB1	YER165W	Poly(A) binding protein	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SEC53	YFL045C	Phosphomannomutase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSA2	YLL024C	HSP70 family ATP-binding protein	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SIS1	YNL007C	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
YEF3	YLR249W	Translation elongation factor 3	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SAM1	YLR180W	S-adenosylmethionine synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TIF2	YJL138C	Translation initiation factor eIF4A	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS5	YJR123W	Protein component of the small (40S) ribosomal subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SAH1	YER043C	S-adenosyl-L-homocysteine hydrolase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TDH1	YJL052W	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TAL1	YLR354C	Transaldolase, enzyme in the non-oxidative pentose phosphate pathway	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TEF4	YKL081W	Gamma subunit of translational elongation factor eEF1B	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
THS1	YIL078W	Threonyl-tRNA synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
VAS1	YGR094W	Mitochondrial and cytoplasmic valyl-tRNA synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPS2	YGL123W	Protein component of the small (40S) subunit	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
YHB1	YGR234W	Nitric oxide oxidoreductase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
TSA1	YML028W	Thioredoxin peroxidase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SER1	YOR184W	3-phosphoserine aminotransferase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ACT1	YFL039C	Actin, structural protein in cytoskeleton	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
OLA1	YBR025C	P-loop ATPase with similarity to human OLA1 and bacterial YchF	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
KRS1	YDR037W	Lysyl-tRNA synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ENO2	YHR174W	Enolase II, a phosphopyruvate hydratase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
FBA1	YKL060C	Fructose 1,6-bisphosphate aldolase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
FAS2	YPL231W	Alpha subunit of fatty acid synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PGK1	YCR012W	3-phosphoglycerate kinase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HSP82	YPL240C	Hsp90 chaperone	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PDC1	YLR044C	Major of three pyruvate decarboxylase isozymes	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
GND1	YHR183W	6-phosphogluconate dehydrogenase (decarboxylating)	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
DPS1	YLL018C	Aspartyl-tRNA synthetase, primarily cytoplasmic	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
PMA1	YGL008C	Plasma membrane P2-type H+-ATPase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HSP104	YLL026W	Disaggregase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
HEF3	YNL014W	Translational elongation factor EF-3	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
CDC60	YPL160W	Cytosolic leucyl tRNA synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ERG20	YJL167W	Farnesyl pyrophosphate synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
RPL5	YPL131W	Ribosomal 60S subunit protein L5	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
CDC19	YAL038W	Pyruvate kinase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ASN1	YPR145W	Asparagine synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
LEU1	YGL009C	Isopropylmalate isomerase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
LYS21	YDL131W	Homocitrate synthase isozyme	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ALD6	YPL061W	Cytosolic aldehyde dehydrogenase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
FAS1	YKL182W	Beta subunit of fatty acid synthetase	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
MOT2	YER068W	Ubiquitin-protein ligase subunit of the CCR4-NOT complex	physical	3	3	2	Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex
STS1	YIR011C	Protein required for localizing proteasomes to the nucleus	genetic	3	2	2	Negative Genetic, Negative Genetic, Dosage Rescue
SMC3	YJL074C	Subunit of the multiprotein cohesin complex	genetic	3	2	2	Synthetic Lethality, Negative Genetic, Negative Genetic
MRE11	YMR224C	Nuclease subunit of the MRX complex with Rad50p and Xrs2p	genetic	3	2	2	Synthetic Lethality, Negative Genetic, Negative Genetic
BRE1	YDL074C	E3 ubiquitin ligase	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SEM1	YDR363W-A	19S proteasome regulatory particle lid subcomplex component	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
RPT5	YOR117W	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	3	1	2	Positive Genetic, Positive Genetic, Positive Genetic
SCS2	YER120W	Integral ER membrane protein, regulates phospholipid metabolism	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
TSA1	YML028W	Thioredoxin peroxidase	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
UFD2	YDL190C	Ubiquitin (Ub) chain assembly factor (E4)	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SUM1	YDR310C	Transcriptional repressor that regulates middle-sporulation genes	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SWI4	YER111C	DNA binding component of the SBF complex (Swi4p-Swi6p)	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
RTF1	YGL244W	Subunit of RNAPII-associated chromatin remodeling Paf1 complex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SDS3	YIL084C	Component of the Rpd3L histone deacetylase complex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
YOX1	YML027W	Homeobox transcriptional repressor	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
UBX4	YMR067C	UBX domain-containing protein that interacts with Cdc48p	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SAP30	YMR263W	Component of Rpd3L histone deacetylase complex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
TMC1	YOR052C	AN1-type zinc finger protein, effector of proteotoxic stress response	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SLK19	YOR195W	Kinetochore-associated protein	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SCC2	YDR180W	Subunit of cohesin loading factor (Scc2p-Scc4p)	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
VPS24	YKL041W	One of four subunits of the ESCRT-III complex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
PRE6	YOL038W	Alpha 4 subunit of the 20S proteasome	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
CTF18	YMR078C	Subunit of a complex with Ctf8p	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
FKS1	YLR342W	Catalytic subunit of 1,3-beta-D-glucan synthase	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
HHF1	YBR009C	Histone H4	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
RAD52	YML032C	Protein involved in homologous recombination	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
DEP1	YAL013W	Component of the Rpd3L histone deacetylase complex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
PIN4	YBL051C	Protein involved in G2/M phase progression and response to DNA damage	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
CLB2	YPR119W	B-type cyclin involved in cell cycle progression	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
DBF2	YGR092W	Ser/Thr kinase involved in transcription and stress response	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
BUB3	YOR026W	Kinetochore checkpoint WD40 repeat protein	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
MMS22	YLR320W	Subunit of E3 ubiquitin ligase complex involved in replication repair	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
ELP6	YMR312W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
CTF8	YHR191C	Subunit of a complex with Ctf18p	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
PUP1	YOR157C	Beta 2 subunit of the 20S proteasome	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
POL32	YJR043C	Third subunit of DNA polymerase delta	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
RPL11B	YGR085C	Ribosomal 60S subunit protein L11B	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
PUP2	YGR253C	Alpha 5 subunit of the 20S proteasome	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
DCC1	YCL016C	Subunit of a complex with Ctf8p and Ctf18p	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
RPL8A	YHL033C	Ribosomal 60S subunit protein L8A	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
NCS6	YGL211W	Protein required for uridine thiolation of Gln, Lys, and Glu tRNAs	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
UBP3	YER151C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	3	2	1	Affinity Capture-Western, Affinity Capture-Western, Co-fractionation
STS1	YIR011C	Protein required for localizing proteasomes to the nucleus	physical	2	2	2	Two-hybrid, Reconstituted Complex
RRI1	YDL216C	Catalytic subunit of the COP9 signalosome (CSN) complex	genetic	2	2	2	Negative Genetic, Synthetic Growth Defect
SGS1	YMR190C	RecQ family nucleolar DNA helicase	genetic	2	2	2	Synthetic Lethality, Positive Genetic
NAB2	YGL122C	Nuclear polyadenylated RNA-binding protein	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
HSM3	YBR272C	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	2	2	2	Affinity Capture-Western, Affinity Capture-MS
CMD1	YBR109C	Calmodulin	physical	2	2	2	Reconstituted Complex, Affinity Capture-MS
GLE2	YER107C	RNA export factor associated with the nuclear pore complex (NPC)	genetic	2	2	2	Negative Genetic, Synthetic Growth Defect
RAD23	YEL037C	Protein with ubiquitin-like N terminus	genetic	2	2	2	Synthetic Lethality, Dosage Rescue
DED81	YHR019C	Cytosolic asparaginyl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPB2	YOR151C	RNA polymerase II second largest subunit B150	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GLC7	YER133W	Type 1 S/T protein phosphatase (PP1) catalytic subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL10	YLR075W	Ribosomal 60S subunit protein L10	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL30	YGL030W	Ribosomal 60S subunit protein L30	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
COR1	YBL045C	Core subunit of the ubiquinol-cytochrome c reductase complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MCM21	YDR318W	Component of the kinetochore sub-complex COMA	genetic	2	1	2	Negative Genetic, Negative Genetic
KES1	YPL145C	Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MES1	YGR264C	Methionyl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NOP56	YLR197W	Essential evolutionarily-conserved nucleolar protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DBP7	YKR024C	Putative ATP-dependent RNA helicase of the DEAD-box family	genetic	2	1	2	Negative Genetic, Negative Genetic
FUN12	YAL035W	Translation initiation factor eIF5B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NOP1	YDL014W	Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DED1	YOR204W	ATP-dependent DEAD-box RNA helicase with strand-annealing activity	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPA190	YOR341W	RNA polymerase I largest subunit A190	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPA135	YPR010C	RNA polymerase I second largest subunit A135	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GCD11	YER025W	Gamma subunit of the translation initiation factor eIF2	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ILS1	YBL076C	Cytoplasmic isoleucine-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC61	YLR378C	Conserved ER protein translocation channel	genetic	2	1	2	Negative Genetic, Negative Genetic
SOK1	YDR006C	Protein of unknown function	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YRB1	YDR002W	Ran GTPase binding protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ZEO1	YOL109W	Peripheral membrane protein of the plasma membrane	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RVB2	YPL235W	ATP-dependent DNA helicase, also known as reptin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TOM70	YNL121C	Component of the TOM (translocase of outer membrane) complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RVB1	YDR190C	ATP-dependent DNA helicase, also known as pontin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YDJ1	YNL064C	Type I HSP40 co-chaperone	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
STI1	YOR027W	Evolutionarily-conserved Hsp90 cochaperone	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TMA19	YKL056C	Protein that associates with ribosomes	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
VMA2	YBR127C	Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YMR226C	YMR226C	NADP(+)-dependent serine dehydrogenase and carbonyl reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TPM1	YNL079C	Major isoform of tropomyosin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SUB2	YDL084W	Component of the TREX complex required for nuclear mRNA export	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TIF3	YPR163C	Translation initiation factor eIF-4B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TSL1	YML100W	Large subunit of trehalose 6-phosphate synthase/phosphatase complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SSZ1	YHR064C	Hsp70 protein that interacts with Zuo1p (a DnaJ homolog)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SUP45	YBR143C	Polypeptide release factor (eRF1) in translation termination	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TPS1	YBR126C	Synthase subunit of trehalose-6-P synthase/phosphatase complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TPS2	YDR074W	Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ZUO1	YGR285C	Ribosome-associated chaperone	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC26	YDR238C	Essential beta-coat protein of the COPI coatomer	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TIF5	YPR041W	Translation initiation factor eIF5	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TPD3	YAL016W	Regulatory subunit A of the heterotrimeric PP2A complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TUB2	YFL037W	Beta-tubulin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ZPR1	YGR211W	Essential protein with two zinc fingers	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SGT2	YOR007C	Glutamine-rich cytoplasmic cochaperone	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SPT16	YGL207W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SAM2	YDR502C	S-adenosylmethionine synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC4	YFL005W	Rab family GTPase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TUB1	YML085C	Alpha-tubulin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SAC6	YDR129C	Fimbrin, actin-bundling protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TUF1	YOR187W	Mitochondrial translation elongation factor Tu (EF-Tu)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SUP35	YDR172W	Translation termination factor eRF3	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC27	YGL137W	Essential beta'-coat protein of the COPI coatomer	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS9B	YBR189W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
UBA1	YKL210W	Ubiquitin activating enzyme (E1)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TRP2	YER090W	Anthranilate synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SND3	YBR106W	Involved in SRP-independent protein targeting to the ER	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
VMA1	YDL185W	Subunit A of the V1 peripheral membrane domain of V-ATPase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC23	YPR181C	GTPase-activating protein, stimulates the GTPase activity of Sar1p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS16B	YDL083C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC14	YMR079W	Phosphatidylinositol/phosphatidylcholine transfer protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SES1	YDR023W	Cytosolic seryl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TPI1	YDR050C	Triose phosphate isomerase, abundant glycolytic enzyme	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
STM1	YLR150W	Protein required for optimal translation under nutrient stress	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TPS3	YMR261C	Regulatory subunit of trehalose-6-phosphate synthase/phosphatase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ZWF1	YNL241C	Glucose-6-phosphate dehydrogenase (G6PD)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SUI2	YJR007W	Alpha subunit of the translation initiation factor eIF2	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SPE3	YPR069C	Spermidine synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TKL1	YPR074C	Transketolase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SCS2	YER120W	Integral ER membrane protein, regulates phospholipid metabolism	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SAR1	YPL218W	ARF family GTPase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YDR341C	YDR341C	Arginyl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YMR099C	YMR099C	Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC24	YIL109C	Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YLR179C	YLR179C	Protein of unknown function with similarity to Tfs1p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TDH2	YJR009C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YHR020W	YHR020W	Prolyl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
VMA13	YPR036W	Subunit H of the V1 peripheral membrane domain of V-ATPase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TRP3	YKL211C	Indole-3-glycerol-phosphate synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SEC21	YNL287W	Gamma subunit of coatomer	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RTN1	YDR233C	Reticulon protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS20	YHL015W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TRP5	YGL026C	Tryptophan synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SRV2	YNL138W	CAP (cyclase-associated protein)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
TEF2	YBR118W	Translational elongation factor EF-1 alpha	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SER3	YER081W	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS4B	YHR203C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
WRS1	YOL097C	Cytoplasmic tryptophanyl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS14A	YCR031C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS8A	YBL072C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS6B	YBR181C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS22A	YJL190C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS26B	YER131W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS17B	YDR447C	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS1B	YML063W	Ribosomal protein of the small (40S) subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS27B	YHR021C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS27B	YHR021C	Protein component of the small (40S) ribosomal subunit	genetic	2	1	2	Negative Genetic, Negative Genetic
RPS11B	YBR048W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
URA5	YML106W	Major orotate phosphoribosyltransferase (OPRTase) isozyme	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YBL005W-A	YBL005W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
XRN1	YGL173C	Evolutionarily-conserved 5'-3' exonuclease	genetic	2	1	2	Negative Genetic, Negative Genetic
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS24A	YER074W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPS24A	YER074W	Protein component of the small (40S) ribosomal subunit	genetic	2	1	2	Negative Genetic, Negative Genetic
RVS167	YDR388W	Calmodulin-binding actin-associated protein	genetic	2	1	2	Negative Genetic, Negative Genetic
SSA3	YBL075C	ATPase involved in protein folding and the response to stress	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SSA4	YER103W	Heat shock protein that is highly induced upon stress	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
UBA4	YHR111W	E1-like protein that activates Urm1p before urmylation	genetic	2	1	2	Negative Genetic, Negative Genetic
SRP1	YNL189W	Karyopherin alpha homolog	physical	2	1	2	Reconstituted Complex, Reconstituted Complex
RRP6	YOR001W	Nuclear exosome exonuclease component	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SHE1	YBL031W	Mitotic spindle protein	genetic	2	1	2	Negative Genetic, Negative Genetic
UBS1	YBR165W	Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p	genetic	2	1	2	Negative Genetic, Negative Genetic
SWD3	YBR175W	Essential subunit of the COMPASS (Set1C) complex	genetic	2	1	2	Negative Genetic, Negative Genetic
STE50	YCL032W	Adaptor protein for various signaling pathways	genetic	2	1	2	Negative Genetic, Negative Genetic
RPP1B	YDL130W	Ribosomal protein P1 beta	genetic	2	1	2	Negative Genetic, Negative Genetic
RPP1A	YDL081C	Ribosomal stalk protein P1 alpha	genetic	2	1	2	Negative Genetic, Negative Genetic
RPS29B	YDL061C	Protein component of the small (40S) ribosomal subunit	genetic	2	1	2	Negative Genetic, Negative Genetic
XRS2	YDR369C	FHA domain-containing component of the Mre11 complex	genetic	2	1	2	Negative Genetic, Negative Genetic
SHO1	YER118C	Transmembrane osmosensor for filamentous growth and HOG pathways	genetic	2	1	2	Negative Genetic, Negative Genetic
YBP2	YGL060W	Central kinetochore associated protein	genetic	2	1	2	Negative Genetic, Negative Genetic
SNF6	YHL025W	Subunit of the SWI/SNF chromatin remodeling complex	genetic	2	1	2	Negative Genetic, Negative Genetic
WSS1	YHR134W	SUMO-ligase and SUMO-targeted metalloprotease	genetic	2	1	2	Negative Genetic, Negative Genetic
RPS21B	YJL136C	Protein component of the small (40S) ribosomal subunit	genetic	2	1	2	Negative Genetic, Negative Genetic
SRC1	YML034W	Inner nuclear membrane protein	genetic	2	1	2	Negative Genetic, Negative Genetic
SSP2	YOR242C	Sporulation specific protein that localizes to the spore wall	genetic	2	1	2	Negative Genetic, Negative Genetic
VIK1	YPL253C	Protein that forms a kinesin-14 heterodimeric motor with Kar3p	genetic	2	1	2	Negative Genetic, Negative Genetic
YAR1	YPL239W	Nucleocytoplasmic shuttling assembly chaperone	genetic	2	1	2	Negative Genetic, Negative Genetic
SGF11	YPL047W	Integral subunit of SAGA histone acetyltransferase complex	genetic	2	1	2	Negative Genetic, Negative Genetic
ULA1	YPL003W	Protein that activates Rub1p (NEDD8) before neddylation	genetic	2	1	2	Negative Genetic, Negative Genetic
HCR1	YLR192C	eIF3j component of translation initiation factor 3 (eIF3)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NIP1	YMR309C	eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RLI1	YDR091C	Essential Fe-S protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
IMD3	YLR432W	Inosine monophosphate dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ALA1	YOR335C	Cytoplasmic and mitochondrial alanyl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PUF6	YDR496C	Pumilio-homology domain protein	genetic	2	1	2	Negative Genetic, Negative Genetic
EFT2	YDR385W	Elongation factor 2 (EF-2), also encoded by EFT1	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HGH1	YGR187C	Chaperone protein for translation factor eEF2	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ADE13	YLR359W	Adenylosuccinate lyase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARC35	YNR035C	Subunit of the ARP2/3 complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARO1	YDR127W	Pentafunctional arom protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARP2	YDL029W	Essential component of the Arp2/3 complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARP3	YJR065C	Essential component of the Arp2/3 complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BAT1	YHR208W	Mitochondrial branched-chain amino acid (BCAA) aminotransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BMH2	YDR099W	14-3-3 protein, minor isoform	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CAR1	YPL111W	Arginase, catabolizes arginine to ornithine and urea	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
COP1	YDL145C	Alpha subunit of COPI vesicle coatomer complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CPR1	YDR155C	Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CYS4	YGR155W	Cystathionine beta-synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ERG13	YML126C	3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FPR1	YNL135C	Peptidyl-prolyl cis-trans isomerase (PPIase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FRS1	YLR060W	Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FKS1	YLR342W	Catalytic subunit of 1,3-beta-D-glucan synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GCN1	YGL195W	Positive regulator of the Gcn2p kinase activity	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GCN1	YGL195W	Positive regulator of the Gcn2p kinase activity	genetic	2	1	2	Negative Genetic, Negative Genetic
CCT4	YDL143W	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GGA2	YHR108W	Protein that regulates Arf1p, Arf2p to facilitate Golgi trafficking	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GLO3	YER122C	ADP-ribosylation factor GTPase activating protein (ARF GAP)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GLY1	YEL046C	Threonine aldolase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HIS4	YCL030C	Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
IPP1	YBR011C	Cytoplasmic inorganic pyrophosphatase (PPase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CLU1	YMR012W	Subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARB1	YER036C	ATPase of the ATP-binding cassette (ABC) family	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GFA1	YKL104C	Glutamine-fructose-6-phosphate amidotransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MCD1	YDL003W	Essential alpha-kleisin subunit of the cohesin complex	genetic	2	1	2	Negative Genetic, Negative Genetic
GLT1	YDL171C	NAD(+)-dependent glutamate synthase (GOGAT)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NCL1	YBL024W	S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NMD3	YHR170W	Protein involved in nuclear export of the large ribosomal subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
AHA1	YDR214W	Co-chaperone that binds Hsp82p and activates its ATPase activity	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LAT1	YNL071W	Dihydrolipoamide acetyltransferase component (E2) of the PDC	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PDA1	YER178W	E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PFK1	YGR240C	Alpha subunit of heterooctameric phosphofructokinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PRO2	YOR323C	Gamma-glutamyl phosphate reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LEA1	YPL213W	Component of U2 snRNP complex	genetic	2	1	2	Positive Genetic, Positive Genetic
MVD1	YNR043W	Mevalonate pyrophosphate decarboxylase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MIR1	YJR077C	Mitochondrial phosphate carrier	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CPA2	YJR109C	Large subunit of carbamoyl phosphate synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GPM1	YKL152C	Tetrameric phosphoglycerate mutase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ADE57	YGL234W	Bifunctional enzyme of 'de novo' purine nucleotide pathway	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DBP2	YNL112W	ATP-dependent RNA helicase of the DEAD-box protein family	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PIL1	YGR086C	Eisosome core component	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PGI1	YBR196C	Glycolytic enzyme phosphoglucose isomerase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CCT2	YIL142W	Subunit beta of the cytosolic chaperonin Cct ring complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CCT8	YJL008C	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NAT1	YDL040C	Subunit of protein N-terminal acetyltransferase NatA	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PFK2	YMR205C	Beta subunit of heterooctameric phosphofructokinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PTC1	YDL006W	Type 2C protein phosphatase (PP2C)	genetic	2	1	2	Positive Genetic, Positive Genetic
CCT7	YJL111W	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CAM1	YPL048W	One of two isoforms of the gamma subunit of eEF1B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
EFB1	YAL003W	Translation elongation factor 1 beta	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NEW1	YPL226W	Translation termination and ribosome biogenesis factor	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LTE1	YAL024C	Protein similar to GDP/GTP exchange factors	genetic	2	1	2	Negative Genetic, Negative Genetic
GLN1	YPR035W	Glutamine synthetase (GS)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GET3	YDL100C	Guanine nucleotide exchange factor for Gpa1p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ATP2	YJR121W	Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
EGD2	YHR193C	Alpha subunit of the nascent polypeptide-associated complex (NAC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ABP1	YCR088W	Actin-binding protein of the cortical actin cytoskeleton	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LSP1	YPL004C	Eisosome core component	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HYP2	YEL034W	Translation elongation factor eIF-5A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ADO1	YJR105W	Adenosine kinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GPP1	YIL053W	Constitutively expressed DL-glycerol-3-phosphate phosphatase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DCS1	YLR270W	Non-essential hydrolase involved in mRNA decapping	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARF1	YDL192W	ADP-ribosylation factor	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARF1	YDL192W	ADP-ribosylation factor	genetic	2	1	2	Negative Genetic, Negative Genetic
CPR6	YLR216C	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RAD54	YGL163C	DNA-dependent ATPase that stimulates strand exchange	genetic	2	1	2	Negative Genetic, Negative Genetic
AHP1	YLR109W	Thiol-specific peroxiredoxin	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CMP2	YML057W	Calcineurin A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GSP1	YLR293C	Ran GTPase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FAA4	YMR246W	Long chain fatty acyl-CoA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
OYE2	YHR179W	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PST2	YDR032C	FMN-dependent NAD(P)H:quinone oxidoreductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
POR1	YNL055C	Mitochondrial porin (voltage-dependent anion channel)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ILV5	YLR355C	Acetohydroxyacid reductoisomerase and mtDNA binding protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CHK1	YBR274W	Serine/threonine kinase and DNA damage checkpoint effector	genetic	2	1	2	Negative Genetic, Negative Genetic
ADK1	YDR226W	Adenylate kinase, required for purine metabolism	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
COF1	YLL050C	Cofilin, involved in pH-dependent actin filament depolarization	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GPD1	YDL022W	NAD-dependent glycerol-3-phosphate dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PET9	YBL030C	Major ADP/ATP carrier of the mitochondrial inner membrane	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LIA1	YJR070C	Deoxyhypusine hydroxylase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PRO3	YER023W	Delta 1-pyrroline-5-carboxylate reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
APT1	YML022W	Adenine phosphoribosyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DLD3	YEL071W	2-hydroxyglutarate transhydrogenase, and minor D-lactate dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ACS2	YLR153C	Acetyl-coA synthetase isoform	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ERG10	YPL028W	Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FUM1	YPL262W	Fumarase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CCT3	YJL014W	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GRS1	YBR121C	Cytoplasmic and mitochondrial glycyl-tRNA synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PDC5	YLR134W	Minor isoform of pyruvate decarboxylase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RNA1	YMR235C	GTPase activating protein (GAP) for Gsp1p	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ERG6	YML008C	Delta(24)-sterol C-methyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MET6	YER091C	Cobalamin-independent methionine synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FRS2	YFL022C	Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NPA3	YJR072C	Member of the conserved GPN-loop GTPase family	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PBA1	YLR199C	Protein involved in 20S proteasome assembly	genetic	2	1	2	Negative Genetic, Negative Genetic
FAA1	YOR317W	Long chain fatty acyl-CoA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HOM3	YER052C	Aspartate kinase (L-aspartate 4-P-transferase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
APA1	YCL050C	AP4A phosphorylase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CPA1	YOR303W	Small subunit of carbamoyl phosphate synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BUB3	YOR026W	Kinetochore checkpoint WD40 repeat protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RNR1	YER070W	Major isoform of large subunit of ribonucleotide-diphosphate reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ALD5	YER073W	Mitochondrial aldehyde dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARG1	YOL058W	Arginosuccinate synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PRS5	YOL061W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARA1	YBR149W	NADP+ dependent arabinose dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ADE6	YGR061C	Formylglycinamidine-ribonucleotide (FGAM)-synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
APE2	YKL157W	Aminopeptidase yscII	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HOM2	YDR158W	Aspartic beta semi-aldehyde dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
EXG1	YLR300W	Major exo-1,3-beta-glucanase of the cell wall	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PRS1	YKL181W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DDI1	YER143W	Aspartic-type endopeptidase	genetic	2	1	2	Negative Genetic, Negative Genetic
ARG3	YJL088W	Ornithine carbamoyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GDH1	YOR375C	NADP(+)-dependent glutamate dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LEU4	YNL104C	Alpha-isopropylmalate synthase (2-isopropylmalate synthase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MSN5	YDR335W	Karyopherin	genetic	2	1	2	Negative Genetic, Negative Genetic
RIM101	YHL027W	Cys2His2 zinc-finger transcriptional repressor	genetic	2	1	2	Negative Genetic, Negative Genetic
RPL4A	YBR031W	Ribosomal 60S subunit protein L4A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL9A	YGL147C	Ribosomal 60S subunit protein L9A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DBP5	YOR046C	Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ELO3	YLR372W	Elongase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HXK2	YGL253W	Hexokinase isoenzyme 2	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
KAR3	YPR141C	Minus-end-directed microtubule motor	genetic	2	1	2	Negative Genetic, Negative Genetic
KAR2	YJL034W	ATPase involved in protein import into the ER	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ESC1	YMR219W	Protein involved in telomeric silencing	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HCH1	YNL281W	Heat shock protein regulator	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
AZF1	YOR113W	Zinc-finger transcription factor	genetic	2	1	2	Negative Genetic, Negative Genetic
RPL1B	YGL135W	Ribosomal 60S subunit protein L1B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ATP1	YBL099W	Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CLA4	YNL298W	Cdc42p-activated signal transducing kinase	genetic	2	1	2	Negative Genetic, Negative Genetic
RPL11B	YGR085C	Ribosomal 60S subunit protein L11B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DYS1	YHR068W	Deoxyhypusine synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RNR4	YGR180C	Ribonucleotide-diphosphate reductase (RNR) small subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL13A	YDL082W	Ribosomal 60S subunit protein L13A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL14B	YHL001W	Ribosomal 60S subunit protein L14B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL7A	YGL076C	Ribosomal 60S subunit protein L7A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL19B	YBL027W	Ribosomal 60S subunit protein L19B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL27B	YDR471W	Ribosomal 60S subunit protein L27B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ASN2	YGR124W	Asparagine synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARO8	YGL202W	Aromatic aminotransferase I	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FUR1	YHR128W	Uracil phosphoribosyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CIT1	YNR001C	Mitochondrial citrate synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ERG2	YMR202W	C-8 sterol isomerase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
EHT1	YBR177C	Octanoyl-CoA:ethanol acyltransferase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GLK1	YCL040W	Glucokinase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LYS20	YDL182W	Homocitrate synthase isozyme and functions in DNA repair	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARI1	YGL157W	NADPH-dependent aldehyde reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARG56	YER069W	Acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ADE16	YLR028C	Enzyme of 'de novo' purine biosynthesis	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BNA1	YJR025C	3-hydroxyanthranilic acid dioxygenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
MSC7	YHR039C	Protein of unknown function	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GRE3	YHR104W	Aldose reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CYK3	YDL117W	SH3-domain protein located in the bud neck and cytokinetic actin ring	genetic	2	1	2	Negative Genetic, Negative Genetic
CAJ1	YER048C	Nuclear type II J heat shock protein of the E. coli dnaJ family	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
FRD1	YEL047C	Soluble fumarate reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
IDP1	YDL066W	Mitochondrial NADP-specific isocitrate dehydrogenase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GLN4	YOR168W	Glutamine tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
LAP3	YNL239W	Cysteine aminopeptidase with homocysteine-thiolactonase activity	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PSA1	YDL055C	GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL20A	YMR242C	Ribosomal 60S subunit protein L20A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL8B	YLL045C	Ribosomal 60S subunit protein L8A	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GSH1	YJL101C	Gamma glutamylcysteine synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GCS1	YDL226C	ADP-ribosylation factor GTPase activating protein (ARF GAP)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ARO2	YGL148W	Bifunctional chorismate synthase and flavin reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
GUA1	YMR217W	GMP synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PCM1	YEL058W	Essential N-acetylglucosamine-phosphate mutase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PAN5	YHR063C	2-dehydropantoate 2-reductase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
CYC1	YJR048W	Cytochrome c, isoform 1	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PYP1	YNL010W	Sugar alcohol phosphatase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ALO1	YML086C	D-Arabinono-1,4-lactone oxidase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
QNS1	YHR074W	Glutamine-dependent NAD(+) synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PNC1	YGL037C	Nicotinamidase that converts nicotinamide to nicotinic acid	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RHO3	YIL118W	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HXT3	YDR345C	Low affinity glucose transporter of the major facilitator superfamily	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
OAC1	YKL120W	Mitochondrial inner membrane transporter	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ERG3	YLR056W	C-5 sterol desaturase	genetic	2	1	2	Positive Genetic, Positive Genetic
MET5	YJR137C	Sulfite reductase beta subunit	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ERG9	YHR190W	Farnesyl-diphosphate farnesyl transferase (squalene synthase)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HTS1	YPR033C	Cytoplasmic and mitochondrial histidine tRNA synthetase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RPL12B	YDR418W	Ribosomal 60S subunit protein L12B	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
HIS7	YBR248C	Imidazole glycerol phosphate synthase	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
ENV9	YOR246C	Conserved oxidoreductase involved in lipid droplet morphology	genetic	2	1	2	Negative Genetic, Negative Genetic
STT3	YGL022W	Catalytic subunit of the oligosaccharyltransferase complex of the ER l	genetic	2	2	1	Positive Genetic, Negative Genetic
MRT4	YKL009W	Protein involved in mRNA turnover and ribosome assembly	genetic	2	1	1	Negative Genetic, Negative Genetic
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	genetic	2	1	1	Negative Genetic, Negative Genetic
RPN6	YDL097C	Essential, non-ATPase regulatory subunit of the 26S proteasome lid	genetic	2	1	1	Negative Genetic, Negative Genetic
RPN3	YER021W	Essential non-ATPase regulatory subunit of the 26S proteasome lid	genetic	2	1	1	Negative Genetic, Negative Genetic
RPT2	YDL007W	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	2	1	1	Negative Genetic, Negative Genetic
RPN2	YIL075C	Subunit of the 26S proteasome	genetic	2	1	1	Positive Genetic, Positive Genetic
RPT4	YOR259C	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	2	1	1	Negative Genetic, Negative Genetic
RPN7	YPR108W	Essential non-ATPase regulatory subunit of the 26S proteasome	genetic	2	1	1	Negative Genetic, Negative Genetic
RPO21	YDL140C	RNA polymerase II largest subunit B220	genetic	2	1	1	Negative Genetic, Negative Genetic
RSP5	YER125W	NEDD4 family E3 ubiquitin ligase	genetic	2	1	1	Negative Genetic, Negative Genetic
RTG2	YGL252C	Sensor of mitochondrial dysfunction	genetic	2	1	1	Negative Genetic, Negative Genetic
SSS1	YDR086C	Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p)	genetic	2	1	1	Negative Genetic, Negative Genetic
UBI4	YLL039C	Ubiquitin	genetic	2	1	1	Negative Genetic, Negative Genetic
UBC9	YDL064W	SUMO-conjugating enzyme involved in the Smt3p conjugation pathway	genetic	2	1	1	Negative Genetic, Negative Genetic
SEC20	YDR498C	Membrane glycoprotein v-SNARE	genetic	2	1	1	Negative Genetic, Negative Genetic
YJU2	YKL095W	Essential protein required for pre-mRNA splicing	genetic	2	1	1	Negative Genetic, Negative Genetic
SEC62	YPL094C	Essential subunit of Sec63 complex	genetic	2	1	1	Negative Genetic, Negative Genetic
TAF9	YMR236W	Subunit (17 kDa) of TFIID and SAGA complexes	genetic	2	1	1	Negative Genetic, Negative Genetic
UBP1	YDL122W	Ubiquitin-specific protease	genetic	2	1	1	Negative Genetic, Negative Genetic
VMS1	YDR049W	Peptidyl-tRNA hydrolase that releases stalled peptides from ribosomes,	genetic	2	1	1	Negative Genetic, Negative Genetic
SWI5	YDR146C	Transcription factor that recruits Mediator and Swi/Snf complexes	genetic	2	1	1	Negative Genetic, Negative Genetic
URM1	YIL008W	Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs	genetic	2	1	1	Negative Genetic, Negative Genetic
SGF73	YGL066W	Subunit of DUBm module of SAGA and SLIK	genetic	2	1	1	Negative Genetic, Negative Genetic
RPS21A	YKR057W	Protein component of the small (40S) ribosomal subunit	genetic	2	1	1	Negative Genetic, Negative Genetic
RTT109	YLL002W	Histone acetyltransferase	genetic	2	1	1	Negative Genetic, Negative Genetic
RPS28B	YLR264W	Protein component of the small (40S) ribosomal subunit	genetic	2	1	1	Negative Genetic, Negative Genetic
YML108W	YML108W	Protein of unknown function	genetic	2	1	1	Negative Genetic, Negative Genetic
SDC1	YDR469W	Subunit of the COMPASS (Set1C) complex	genetic	2	1	1	Negative Genetic, Negative Genetic
TFB5	YDR079C-A	Component of RNA polymerase II general transcription factor TFIIH	genetic	2	1	1	Synthetic Rescue, Synthetic Rescue
ACT1	YFL039C	Actin, structural protein in cytoskeleton	genetic	2	1	1	Synthetic Haploinsufficiency, Synthetic Haploinsufficiency
PRE1	YER012W	Beta 4 subunit of the 20S proteasome	genetic	2	1	1	Positive Genetic, Positive Genetic
PRE2	YPR103W	Beta 5 subunit of the 20S proteasome	genetic	2	1	1	Negative Genetic, Negative Genetic
PRE5	YMR314W	Alpha 6 subunit of the 20S proteasome	genetic	2	1	1	Negative Genetic, Negative Genetic
PRE7	YBL041W	Beta 6 subunit of the 20S proteasome	genetic	2	1	1	Positive Genetic, Positive Genetic
PRE8	YML092C	Alpha 2 subunit of the 20S proteasome	genetic	2	1	1	Negative Genetic, Negative Genetic
BCP1	YDR361C	Essential nuclear chaperone for ribosomal protein Rpl23p	genetic	2	1	1	Negative Genetic, Negative Genetic
RNT1	YMR239C	Nuclear dsRNA-specific ribonuclease (RNase III)	genetic	2	1	1	Negative Genetic, Negative Genetic
BEM2	YER155C	Rho GTPase activating protein (RhoGAP)	genetic	2	1	1	Negative Genetic, Negative Genetic
CKS1	YBR135W	Cyclin-dependent protein kinase regulatory subunit and adaptor	genetic	2	1	1	Negative Genetic, Negative Genetic
DNA2	YHR164C	ATP-dependent 5'-flap endonuclease and DNA helicase	genetic	2	1	1	Negative Genetic, Negative Genetic
CDC23	YHR166C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	2	1	1	Negative Genetic, Negative Genetic
ESP1	YGR098C	Separase/separin, a caspase-like cysteine protease	genetic	2	1	1	Negative Genetic, Negative Genetic
COG3	YER157W	Essential component of the conserved oligomeric Golgi complex	genetic	2	1	1	Positive Genetic, Positive Genetic
MYO2	YOR326W	Type V myosin motor involved in actin-based transport of cargos	genetic	2	1	1	Negative Genetic, Negative Genetic
PRE4	YFR050C	Beta 7 subunit of the 20S proteasome	genetic	2	1	1	Negative Genetic, Negative Genetic
DAM1	YGR113W	Essential subunit of the Dam1 complex (aka DASH complex)	genetic	2	1	1	Negative Genetic, Negative Genetic
PHO23	YNL097C	Component of the Rpd3L histone deacetylase complex	genetic	2	1	1	Negative Genetic, Negative Genetic
PUP3	YER094C	Beta 3 subunit of the 20S proteasome	genetic	2	1	1	Negative Genetic, Negative Genetic
BRE2	YLR015W	Subunit of COMPASS (Set1C) complex	genetic	2	1	1	Negative Genetic, Negative Genetic
CDC53	YDL132W	Cullin	genetic	2	1	1	Negative Genetic, Negative Genetic
RAD55	YDR076W	Protein that stimulates strand exchange	genetic	2	1	1	Negative Genetic, Negative Genetic
MET30	YIL046W	F-box protein containing five copies of the WD40 motif	genetic	2	1	1	Negative Genetic, Negative Genetic
CDC20	YGL116W	Activator of anaphase-promoting complex/cyclosome (APC/C)	genetic	2	1	1	Negative Genetic, Negative Genetic
HIR2	YOR038C	Subunit of HIR nucleosome assembly complex	genetic	2	1	1	Negative Genetic, Negative Genetic
NUP57	YGR119C	FG-nucleoporin component of central core of the nuclear pore complex	genetic	2	1	1	Negative Genetic, Negative Genetic
ASK1	YKL052C	Essential subunit of the Dam1 complex (aka DASH complex)	genetic	2	1	1	Negative Genetic, Negative Genetic
APC5	YOR249C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	2	1	1	Negative Genetic, Negative Genetic
CDC27	YBL084C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	2	1	1	Negative Genetic, Negative Genetic
RPL9B	YNL067W	Ribosomal 60S subunit protein L9B	genetic	2	1	1	Negative Genetic, Negative Genetic
BUB1	YGR188C	Protein kinase involved in the cell cycle checkpoint into anaphase	genetic	2	1	1	Negative Genetic, Negative Genetic
POL3	YDL102W	Catalytic subunit of DNA polymerase delta	genetic	2	1	1	Negative Genetic, Negative Genetic
PAM16	YJL104W	Subunit of the import motor (PAM complex)	genetic	2	1	1	Negative Genetic, Negative Genetic
RDS3	YPR094W	Component of the SF3b subcomplex of the U2 snRNP	genetic	2	1	1	Negative Genetic, Negative Genetic
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	genetic	2	1	1	Negative Genetic, Negative Genetic
RPL40B	YKR094C	Ubiquitin-ribosomal 60S subunit protein L40B fusion protein	genetic	2	1	1	Negative Genetic, Negative Genetic
BRL1	YHR036W	Essential nuclear envelope/ER integral membrane protein	genetic	2	1	1	Negative Genetic, Negative Genetic
POC4	YPL144W	Component of a heterodimeric Poc4p-Irc25p chaperone	genetic	2	1	1	Negative Genetic, Negative Genetic
IRC25	YLR021W	Component of a heterodimeric Poc4p-Irc25p chaperone	genetic	2	1	1	Negative Genetic, Negative Genetic
RPL17B	YJL177W	Ribosomal 60S subunit protein L17B	genetic	2	1	1	Negative Genetic, Negative Genetic
RNY1	YPL123C	Vacuolar RNase of the T(2) family	genetic	2	1	1	Negative Genetic, Negative Genetic
CHM7	YJL049W	Yeast homolog of human CHMP7, localizes to the endoplasmic reticulum	genetic	2	1	1	Negative Genetic, Negative Genetic
ICE2	YIL090W	Integral ER membrane protein with type-III transmembrane domains	genetic	2	1	1	Negative Genetic, Negative Genetic
FKH2	YNL068C	Forkhead family transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MSN2	YMR037C	Stress-responsive transcriptional activator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YAP1	YML007W	Basic leucine zipper (bZIP) transcription factor	regulation	1	1	1	DNA to cDNA expression microarray evidence
YAP5	YIR018W	Basic leucine zipper (bZIP) iron-sensing transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC40	YDR364C	Pre-mRNA splicing factor	genetic	1	1	1	Negative Genetic
CHL4	YDR254W	Outer kinetochore protein required for chromosome stability	genetic	1	1	1	Negative Genetic
CTF19	YPL018W	Outer kinetochore protein, needed for accurate chromosome segregation	genetic	1	1	1	Negative Genetic
LEO1	YOR123C	Component of the Paf1 complex	genetic	1	1	1	Positive Genetic
CBF5	YLR175W	Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs	physical	1	1	1	Affinity Capture-MS
RPB3	YIL021W	RNA polymerase II third largest subunit B44	genetic	1	1	1	Negative Genetic
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	genetic	1	1	1	Positive Genetic
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-MS
RPB2	YOR151C	RNA polymerase II second largest subunit B150	genetic	1	1	1	Negative Genetic
GLC7	YER133W	Type 1 S/T protein phosphatase (PP1) catalytic subunit	genetic	1	1	1	Negative Genetic
ARP4	YJL081C	Nuclear actin-related protein involved in chromatin remodeling	genetic	1	1	1	Positive Genetic
IKI3	YLR384C	Subunit of Elongator complex	physical	1	1	1	Affinity Capture-MS
IKI3	YLR384C	Subunit of Elongator complex	genetic	1	1	1	Negative Genetic
ESA1	YOR244W	Catalytic subunit of the histone acetyltransferase complex (NuA4)	physical	1	1	1	Affinity Capture-MS
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	physical	1	1	1	Affinity Capture-MS
NIP7	YPL211W	Nucleolar protein required for 60S ribosome subunit biogenesis	physical	1	1	1	Affinity Capture-MS
NOG1	YPL093W	Putative GTPase	physical	1	1	1	Affinity Capture-MS
NOP2	YNL061W	rRNA m5C methyltransferase	genetic	1	1	1	Positive Genetic
RPF2	YKR081C	Essential protein involved in rRNA maturation and ribosomal assembly	genetic	1	1	1	Negative Genetic
RPL10	YLR075W	Ribosomal 60S subunit protein L10	genetic	1	1	1	Negative Genetic
RPL16A	YIL133C	Ribosomal 60S subunit protein L16A	physical	1	1	1	Affinity Capture-MS
GCD6	YDR211W	Catalytic epsilon subunit of the translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-MS
NOP9	YJL010C	Essential subunit of U3-containing 90S preribosome	genetic	1	1	1	Negative Genetic
POP3	YNL282W	Subunit of both RNase MRP and nuclear RNase P	genetic	1	1	1	Positive Genetic
BRR2	YER172C	RNA-dependent ATPase RNA helicase (DEIH box)	genetic	1	1	1	Negative Genetic
NSE4	YDL105W	Component of the SMC5-SMC6 complex	genetic	1	1	1	Positive Genetic
EMW1	YNL313C	Essential conserved protein with a role in cell wall integrity	physical	1	1	1	Affinity Capture-MS
CDC42	YLR229C	Small rho-like GTPase	physical	1	1	1	Affinity Capture-MS
NUG1	YER006W	GTPase that associates with nuclear 60S pre-ribosomes	physical	1	1	1	Affinity Capture-MS
HAP5	YOR358W	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	genetic	1	1	1	Negative Genetic
ARL1	YBR164C	Soluble GTPase with a role in regulation of membrane traffic	physical	1	1	1	Affinity Capture-MS
POL5	YEL055C	Protein involved in 60S assembly and pre-40S AFs recycling	genetic	1	1	1	Negative Genetic
GUS1	YGL245W	Glutamyl-tRNA synthetase (GluRS)	physical	1	1	1	Affinity Capture-MS
GUS1	YGL245W	Glutamyl-tRNA synthetase (GluRS)	genetic	1	1	1	Negative Genetic
DBP3	YGL078C	RNA-Dependent ATPase, member of DExD/H-box family	physical	1	1	1	Affinity Capture-MS
MAK21	YDR060W	Constituent of 66S pre-ribosomal particles	genetic	1	1	1	Negative Genetic
NAT3	YPR131C	Catalytic subunit of the NatB N-terminal acetyltransferase	physical	1	1	1	Affinity Capture-MS
RCK2	YLR248W	Protein kinase involved in response to oxidative and osmotic stress	physical	1	1	1	Affinity Capture-MS
LSM3	YLR438C-A	Lsm (Like Sm) protein	genetic	1	1	1	Positive Genetic
LSM6	YDR378C	Lsm (Like Sm) protein	genetic	1	1	1	Negative Genetic
NOP1	YDL014W	Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus	genetic	1	1	1	Negative Genetic
DED1	YOR204W	ATP-dependent DEAD-box RNA helicase with strand-annealing activity	genetic	1	1	1	Negative Genetic
PAB1	YER165W	Poly(A) binding protein	genetic	1	1	1	Negative Genetic
NPL3	YDR432W	RNA-binding protein	physical	1	1	1	Affinity Capture-MS
CSL4	YNL232W	Exosome non-catalytic core component	genetic	1	1	1	Negative Genetic
RPC40	YPR110C	RNA polymerase subunit AC40	physical	1	1	1	Affinity Capture-MS
RPB5	YBR154C	RNA polymerase subunit ABC27	physical	1	1	1	Affinity Capture-MS
RET1	YOR207C	Second-largest subunit of RNA polymerase III	physical	1	1	1	Affinity Capture-MS
RPC19	YNL113W	RNA polymerase subunit AC19	genetic	1	1	1	Positive Genetic
RPC25	YKL144C	RNA polymerase III subunit C25	genetic	1	1	1	Negative Genetic
RPC34	YNR003C	RNA polymerase III subunit C34	genetic	1	1	1	Negative Genetic
RPC82	YPR190C	RNA polymerase III subunit C82	physical	1	1	1	Affinity Capture-MS
CBC2	YPL178W	Small subunit of the heterodimeric cap binding complex with Sto1p	genetic	1	1	1	Positive Genetic
ARX1	YDR101C	Nuclear export factor for the ribosomal pre-60S subunit	physical	1	1	1	Affinity Capture-MS
NAP1	YKR048C	Histone chaperone and assembly chaperone for Rps6a/b	physical	1	1	1	Affinity Capture-MS
RPN1	YHR027C	Non-ATPase base subunit of the 19S RP of the 26S proteasome	genetic	1	1	1	Negative Genetic
UBP6	YFR010W	Ubiquitin-specific protease	genetic	1	1	1	Synthetic Lethality
SEC61	YLR378C	Conserved ER protein translocation channel	physical	1	1	1	Affinity Capture-Western
SPG5	YMR191W	Protein required for proteasome assembly during quiescence	physical	1	1	1	Affinity Capture-MS
RRS1	YOR294W	Essential protein that binds ribosomal protein L11	physical	1	1	1	Affinity Capture-MS
SQT1	YIR012W	Specific assembly chaperone for ribosomal protein Rpl10p	physical	1	1	1	Affinity Capture-MS
RPS10B	YMR230W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
TAE1	YBR261C	AdoMet-dependent proline methyltransferase	physical	1	1	1	Affinity Capture-MS
SUP45	YBR143C	Polypeptide release factor (eRF1) in translation termination	genetic	1	1	1	Negative Genetic
SAC6	YDR129C	Fimbrin, actin-bundling protein	genetic	1	1	1	Negative Genetic
SEC27	YGL137W	Essential beta'-coat protein of the COPI coatomer	genetic	1	1	1	Positive Genetic
RPP0	YLR340W	Conserved ribosomal protein P0 of the ribosomal stalk	physical	1	1	1	Affinity Capture-MS
RPP0	YLR340W	Conserved ribosomal protein P0 of the ribosomal stalk	genetic	1	1	1	Negative Genetic
SFB3	YHR098C	Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat	physical	1	1	1	Affinity Capture-MS
SEC23	YPR181C	GTPase-activating protein, stimulates the GTPase activity of Sar1p	genetic	1	1	1	Negative Genetic
SCS7	YMR272C	Sphingolipid alpha-hydroxylase	physical	1	1	1	Affinity Capture-MS
TCP1	YDR212W	Alpha subunit of chaperonin-containing T-complex	physical	1	1	1	Affinity Capture-MS
TEF4	YKL081W	Gamma subunit of translational elongation factor eEF1B	genetic	1	1	1	Negative Genetic
URA2	YJL130C	Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase	physical	1	1	1	Affinity Capture-MS
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	genetic	1	1	1	Negative Genetic
YMC1	YPR058W	Secondary mitochondrial inner membrane glycine transporter	physical	1	1	1	Affinity Capture-MS
SPF1	YEL031W	P-type ATPase, ion transporter of the ER membrane	physical	1	1	1	Affinity Capture-MS
SPF1	YEL031W	P-type ATPase, ion transporter of the ER membrane	genetic	1	1	1	Negative Genetic
SCP160	YJL080C	Essential RNA-binding G protein effector of mating response pathway	physical	1	1	1	Affinity Capture-MS
TCB3	YML072C	Cortical ER protein involved in ER-plasma membrane tethering	physical	1	1	1	Affinity Capture-MS
SHB17	YKR043C	Sedoheptulose bisphosphatase involved in riboneogenesis	physical	1	1	1	Affinity Capture-MS
SEC18	YBR080C	AAA ATPase and SNARE disassembly chaperone	genetic	1	1	1	Negative Genetic
RPS2	YGL123W	Protein component of the small (40S) subunit	genetic	1	1	1	Negative Genetic
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
SRV2	YNL138W	CAP (cyclase-associated protein)	genetic	1	1	1	Negative Genetic
SHM2	YLR058C	Cytosolic serine hydroxymethyltransferase	physical	1	1	1	Affinity Capture-MS
WRS1	YOL097C	Cytoplasmic tryptophanyl-tRNA synthetase	genetic	1	1	1	Negative Genetic
RPS6B	YBR181C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
VAC8	YEL013W	Vacuole-specific Myo2p receptor	physical	1	1	1	Affinity Capture-MS
RPS11B	YBR048W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	physical	1	1	1	Affinity Capture-MS
XRN1	YGL173C	Evolutionarily-conserved 5'-3' exonuclease	physical	1	1	1	Affinity Capture-MS
TIM23	YNR017W	Essential component of the TIM23 complex	physical	1	1	1	Affinity Capture-MS
RPO21	YDL140C	RNA polymerase II largest subunit B220	physical	1	1	1	Affinity Capture-MS
RPS0B	YLR048W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS19B	YNL302C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS23A	YGR118W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS23A	YGR118W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
RPS7B	YNL096C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RRP43	YCR035C	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-MS
RSC8	YFR037C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-MS
RSP5	YER125W	NEDD4 family E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-MS
RTG2	YGL252C	Sensor of mitochondrial dysfunction	physical	1	1	1	Affinity Capture-MS
RVS161	YCR009C	Amphiphysin-like lipid raft protein	physical	1	1	1	Affinity Capture-MS
RVS161	YCR009C	Amphiphysin-like lipid raft protein	genetic	1	1	1	Negative Genetic
RVS167	YDR388W	Calmodulin-binding actin-associated protein	physical	1	1	1	Affinity Capture-MS
SAC1	YKL212W	Phosphatidylinositol phosphate phosphatase	physical	1	1	1	Affinity Capture-MS
SBA1	YKL117W	Co-chaperone that binds and regulates Hsp90 family chaperones	physical	1	1	1	Affinity Capture-MS
SEC13	YLR208W	Structural component of 3 complexes	physical	1	1	1	Affinity Capture-MS
SEC17	YBL050W	Alpha-SNAP cochaperone	physical	1	1	1	Affinity Capture-MS
SER33	YIL074C	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	physical	1	1	1	Affinity Capture-MS
SFA1	YDL168W	Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase	physical	1	1	1	Affinity Capture-MS
SHP1	YBL058W	UBX domain-containing substrate adaptor for Cdc48p	physical	1	1	1	Affinity Capture-MS
SHP1	YBL058W	UBX domain-containing substrate adaptor for Cdc48p	genetic	1	1	1	Negative Genetic
SKP1	YDR328C	Evolutionarily conserved kinetochore protein	physical	1	1	1	Affinity Capture-MS
SLT2	YHR030C	Serine/threonine MAP kinase	physical	1	1	1	Affinity Capture-MS
SNZ1	YMR096W	Subunit of a two-component pyridoxal-5'-phosphate synthase	physical	1	1	1	Affinity Capture-MS
SPT5	YML010W	Spt4p/5p (DSIF) transcription elongation factor complex subunit	physical	1	1	1	Affinity Capture-MS
SRP54	YPR088C	Signal recognition particle (SRP) subunit (homolog of mammalian SRP54)	physical	1	1	1	Affinity Capture-MS
SSC1	YJR045C	Hsp70 family ATPase	physical	1	1	1	Affinity Capture-MS
SSD1	YDR293C	Translational repressor	physical	1	1	1	Affinity Capture-MS
SSS1	YDR086C	Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p)	physical	1	1	1	Affinity Capture-MS
SST2	YLR452C	GTPase-activating protein for Gpa1p	physical	1	1	1	Affinity Capture-MS
SST2	YLR452C	GTPase-activating protein for Gpa1p	genetic	1	1	1	Positive Genetic
SUA7	YPR086W	Transcription factor TFIIB	physical	1	1	1	Affinity Capture-MS
SUI3	YPL237W	Beta subunit of the translation initiation factor eIF2	physical	1	1	1	Affinity Capture-MS
SVL3	YPL032C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
SXM1	YDR395W	Nuclear transport factor (karyopherin)	physical	1	1	1	Affinity Capture-MS
TAF14	YPL129W	Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes	physical	1	1	1	Affinity Capture-MS
TFG1	YGR186W	TFIIF (Transcription Factor II) largest subunit	physical	1	1	1	Affinity Capture-MS
THR1	YHR025W	Homoserine kinase	physical	1	1	1	Affinity Capture-MS
THR4	YCR053W	Threonine synthase	physical	1	1	1	Affinity Capture-MS
TIF4631	YGR162W	Translation initiation factor eIF4G and scaffold protein	physical	1	1	1	Affinity Capture-MS
TMA20	YER007C-A	Protein of unknown function that associates with ribosomes	physical	1	1	1	Affinity Capture-MS
TMA22	YJR014W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
TPA1	YER049W	Prolyl hydroxylase	physical	1	1	1	Affinity Capture-MS
TRM8	YDL201W	Catalytic subunit of a tRNA methyltransferase complex	physical	1	1	1	Affinity Capture-MS
TRR1	YDR353W	Cytoplasmic thioredoxin reductase	physical	1	1	1	Affinity Capture-MS
TRX1	YLR043C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Affinity Capture-MS
TYS1	YGR185C	Cytoplasmic tyrosyl-tRNA synthetase	physical	1	1	1	Affinity Capture-MS
UBA4	YHR111W	E1-like protein that activates Urm1p before urmylation	physical	1	1	1	Affinity Capture-MS
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	physical	1	1	1	Affinity Capture-MS
UBP13	YBL067C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-MS
UBP14	YBR058C	Ubiquitin-specific protease	physical	1	1	1	Affinity Capture-MS
VIP1	YLR410W	Bifunctional inositol pyrophosphate kinase and phosphatase	physical	1	1	1	Affinity Capture-MS
VMA10	YHR039C-A	Subunit G of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-MS
VMA4	YOR332W	Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase)	physical	1	1	1	Affinity Capture-MS
VMA5	YKL080W	Subunit C of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-MS
VMA6	YLR447C	Subunit d of the V0 integral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-MS
VPH1	YOR270C	Subunit a of the vacuolar-ATPase V0 domain	physical	1	1	1	Affinity Capture-MS
VPS1	YKR001C	Dynamin-like GTPase required for vacuolar sorting	physical	1	1	1	Affinity Capture-MS
VPS1	YKR001C	Dynamin-like GTPase required for vacuolar sorting	genetic	1	1	1	Phenotypic Enhancement
VPS74	YDR372C	Golgi PI4K effector, PtdIns4P sensor, and retention receptor	physical	1	1	1	Affinity Capture-MS
XPT1	YJR133W	Xanthine-guanine phosphoribosyl transferase	physical	1	1	1	Affinity Capture-MS
YAR010C	YAR010C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YBL005W-B	YBL005W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YBP1	YBR216C	Protein involved in cellular response to oxidative stress	physical	1	1	1	Affinity Capture-MS
YBR012W-A	YBR012W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YBR012W-B	YBR012W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YBR053C	YBR053C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
YCP4	YCR004C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YCR051W	YCR051W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
YDL124W	YDL124W	NADPH-dependent alpha-keto amide reductase	physical	1	1	1	Affinity Capture-MS
YDR098C-A	YDR098C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YDR170W-A	YDR170W-A	Retrotransposon TYA Gag gene	physical	1	1	1	Affinity Capture-MS
YDR210C-C	YDR210C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YDR210C-D	YDR210C-D	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YDR261C-C	YDR261C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YDR316W-A	YDR316W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YDR316W-B	YDR316W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YDR365W-A	YDR365W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YER137C-A	YER137C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YER138C	YER138C	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YER159C-A	YER159C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YER160C	YER160C	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YET3	YDL072C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YGL039W	YGL039W	Aldehyde reductase	physical	1	1	1	Affinity Capture-MS
YGR027W-A	YGR027W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YGR027W-B	YGR027W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YGR038C-A	YGR038C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YGR054W	YGR054W	Eukaryotic initiation factor eIF2A	physical	1	1	1	Affinity Capture-MS
YGR109W-A	YGR109W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YGR161C-C	YGR161C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YGR161C-D	YGR161C-D	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YHI9	YHR029C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YHM2	YMR241W	Citrate and oxoglutarate carrier protein	physical	1	1	1	Affinity Capture-MS
YHR214C-C	YHR214C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YIL108W	YIL108W	Putative metalloendopeptidase	physical	1	1	1	Affinity Capture-MS
YIP3	YNL044W	Protein localized to COPII vesicles	physical	1	1	1	Affinity Capture-MS
YJR026W	YJR026W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YJR028W	YJR028W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YJR029W	YJR029W	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YKR018C	YKR018C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YKT6	YKL196C	Vesicle membrane protein (v-SNARE) with acyltransferase activity	physical	1	1	1	Affinity Capture-MS
YLR035C-A	YLR035C-A	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YLR157C-A	YLR157C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YLR225C	YLR225C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
YLR227W-A	YLR227W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YLR256W-A	YLR256W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YML040W	YML040W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YML045W-A	YML045W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YMR027W	YMR027W	A metal-dependent phosphatase, part of the DUF89 protein family	physical	1	1	1	Affinity Capture-MS
YMR045C	YMR045C	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YMR046C	YMR046C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YMR050C	YMR050C	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YMR051C	YMR051C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YMR315W	YMR315W	Protein with NADP(H) oxidoreductase activity	physical	1	1	1	Affinity Capture-MS
YNL054W-A	YNL054W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YNL054W-B	YNL054W-B	TyB Gag-Pol protein	physical	1	1	1	Affinity Capture-MS
YNL108C	YNL108C	Protein phosphatase	physical	1	1	1	Affinity Capture-MS
YNL208W	YNL208W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YNL284C-A	YNL284C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YNL284C-B	YNL284C-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YOL103W-A	YOL103W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YOL103W-B	YOL103W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
YOP1	YPR028W	Reticulon-interacting protein	physical	1	1	1	Affinity Capture-MS
YOR142W-A	YOR142W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YOR142W-B	YOR142W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-MS
TUM1	YOR251C	Rhodanese domain sulfur transferase	physical	1	1	1	Affinity Capture-MS
YOR283W	YOR283W	Phosphatase with a broad substrate specificity	physical	1	1	1	Affinity Capture-MS
YPK1	YKL126W	S/T protein kinase	physical	1	1	1	Affinity Capture-MS
YPL088W	YPL088W	Putative aryl alcohol dehydrogenase	physical	1	1	1	Affinity Capture-MS
YPL225W	YPL225W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YPL257W-A	YPL257W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YPR1	YDR368W	NADPH-dependent aldo-keto reductase	physical	1	1	1	Affinity Capture-MS
YPR137C-A	YPR137C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YPR148C	YPR148C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YPR158C-C	YPR158C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YPR158W-A	YPR158W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-MS
YPT1	YFL038C	Rab family GTPase	physical	1	1	1	Affinity Capture-MS
YPT31	YER031C	Rab family GTPase	physical	1	1	1	Affinity Capture-MS
YRB2	YIL063C	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
YSA1	YBR111C	Nudix hydrolase family member with ADP-ribose pyrophosphatase activity	physical	1	1	1	Affinity Capture-MS
UBP3	YER151C	Ubiquitin-specific protease that cleaves Ub-protein fusions	genetic	1	1	1	Positive Genetic
SRP1	YNL189W	Karyopherin alpha homolog	genetic	1	1	1	Dosage Rescue
UFO1	YML088W	F-box receptor protein	physical	1	1	1	Affinity Capture-Western
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	physical	1	1	1	Affinity Capture-RNA
SIZ1	YDR409W	SUMO E3 ligase	physical	1	1	1	Affinity Capture-MS
ULP2	YIL031W	Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins	physical	1	1	1	Affinity Capture-MS
RPS11A	YDR025W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
TIF1	YKR059W	Translation initiation factor eIF4A	physical	1	1	1	Affinity Capture-MS
TEF1	YPR080W	Translational elongation factor EF-1 alpha	physical	1	1	1	Affinity Capture-MS
RPS27A	YKL156W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RUB1	YDR139C	Ubiquitin-like protein with similarity to mammalian NEDD8	physical	1	1	1	Biochemical Activity
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	physical	1	1	1	Affinity Capture-MS
TFC6	YDR362C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Affinity Capture-MS
TEM1	YML064C	GTPase involved in initiation of Mitotic Exit Network (MEN)	physical	1	1	1	Proximity Label-MS
TEM1	YML064C	GTPase involved in initiation of Mitotic Exit Network (MEN)	genetic	1	1	1	Negative Genetic
VPS8	YAL002W	Membrane-binding component of the CORVET complex	genetic	1	1	1	Positive Genetic
SGF29	YCL010C	Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes	genetic	1	1	1	Negative Genetic
RPP2B	YDR382W	Ribosomal protein P2 beta	genetic	1	1	1	Negative Genetic
SLX8	YER116C	Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex	genetic	1	1	1	Negative Genetic
YTA7	YGR270W	Chromatin-binding ATPase that regulates histone gene expression	genetic	1	1	1	Positive Genetic
SKI7	YOR076C	GTP-binding protein that couples the Ski complex and exosome	genetic	1	1	1	Negative Genetic
TGS1	YPL157W	Trimethyl guanosine synthase, conserved nucleolar methyl transferase	genetic	1	1	1	Negative Genetic
YME1	YPR024W	Catalytic subunit of i-AAA protease complex	genetic	1	1	1	Positive Genetic
TEL2	YGR099W	Subunit of the ASTRA complex, involved in chromatin remodeling	genetic	1	1	1	Positive Genetic
STU1	YBL034C	Microtubule plus-end-tracking non-motor protein	genetic	1	1	1	Positive Genetic
RRP1	YDR087C	Essential evolutionarily conserved nucleolar protein	genetic	1	1	1	Positive Genetic
TAF12	YDR145W	Subunit (61/68 kDa) of TFIID and SAGA complexes	genetic	1	1	1	Positive Genetic
YCG1	YDR325W	Subunit of the condensin complex	genetic	1	1	1	Positive Genetic
WBP1	YEL002C	Beta subunit of the oligosaccharyl transferase glycoprotein complex	genetic	1	1	1	Positive Genetic
TRS23	YDR246W	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Positive Genetic
SRP102	YKL154W	Signal recognition particle (SRP) receptor beta subunit	genetic	1	1	1	Positive Genetic
SOG2	YOR353C	Key component of the RAM signaling network	genetic	1	1	1	Positive Genetic
YTH1	YPR107C	Essential RNA-binding component of cleavage and polyadenylation factor	genetic	1	1	1	Positive Genetic
SAC3	YDR159W	mRNA export factor	genetic	1	1	1	Positive Genetic
SWR1	YDR334W	Swi2/Snf2-related ATPase	genetic	1	1	1	Positive Genetic
STB5	YHR178W	Transcription factor	genetic	1	1	1	Positive Genetic
VPS53	YJL029C	Component of the GARP (Golgi-associated retrograde protein) complex	genetic	1	1	1	Positive Genetic
SIF2	YBR103W	WD40 repeat-containing subunit of Set3C histone deacetylase complex	genetic	1	1	1	Positive Genetic
SNT1	YCR033W	Set3C histone deacetylase scaffold	genetic	1	1	1	Positive Genetic
SAC7	YDR389W	GTPase activating protein (GAP) for Rho1p	genetic	1	1	1	Positive Genetic
SWI6	YLR182W	Transcription cofactor	genetic	1	1	1	Positive Genetic
VMA9	YCL005W-A	Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex	genetic	1	1	1	Positive Genetic
VPS51	YKR020W	Component of the GARP (Golgi-associated retrograde protein) complex	genetic	1	1	1	Positive Genetic
SET3	YKR029C	Defining member of the SET3 histone deacetylase complex	genetic	1	1	1	Positive Genetic
SIN4	YNL236W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Positive Genetic
SLA2	YNL243W	Adaptor protein that links actin to clathrin and endocytosis	genetic	1	1	1	Positive Genetic
TLG2	YOL018C	Syntaxin-like t-SNARE	genetic	1	1	1	Positive Genetic
VPS17	YOR132W	Subunit of the membrane-associated retromer complex	genetic	1	1	1	Positive Genetic
TAF5	YBR198C	Subunit (90 kDa) of TFIID and SAGA complexes	genetic	1	1	1	Negative Genetic
RRP42	YDL111C	Exosome non-catalytic core component	genetic	1	1	1	Negative Genetic
UBC1	YDR177W	Ubiquitin-conjugating enzyme	genetic	1	1	1	Negative Genetic
SPP41	YDR464W	Protein of unknown function	genetic	1	1	1	Negative Genetic
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	genetic	1	1	1	Negative Genetic
UTR5	YEL035C	Protein of unknown function	genetic	1	1	1	Negative Genetic
SPC19	YDR201W	Essential subunit of the Dam1 complex (aka DASH complex)	genetic	1	1	1	Negative Genetic
YHC1	YLR298C	Component of the U1 snRNP complex required for pre-mRNA splicing	genetic	1	1	1	Negative Genetic
TSC13	YDL015C	Enoyl reductase	genetic	1	1	1	Negative Genetic
SPC97	YHR172W	Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex	genetic	1	1	1	Negative Genetic
RPO31	YOR116C	RNA polymerase III largest subunit C160	genetic	1	1	1	Negative Genetic
TAF6	YGL112C	Subunit (60 kDa) of TFIID and SAGA complexes	genetic	1	1	1	Negative Genetic
SPC42	YKL042W	Central plaque component of spindle pole body (SPB)	genetic	1	1	1	Negative Genetic
SDO1	YLR022C	Guanine nucleotide exchange factor (GEF) for Ria1p	genetic	1	1	1	Negative Genetic
STU2	YLR045C	Microtubule polymerase of the XMAP215/Dis1 family	genetic	1	1	1	Negative Genetic
TUB4	YLR212C	Gamma-tubulin	genetic	1	1	1	Negative Genetic
YCS4	YLR272C	Subunit of the condensin complex	genetic	1	1	1	Negative Genetic
TAP42	YMR028W	Essential protein involved in the TOR signaling pathway	genetic	1	1	1	Negative Genetic
TIF11	YMR260C	Translation initiation factor eIF1A	genetic	1	1	1	Negative Genetic
SEC63	YOR254C	Essential subunit of Sec63 complex	genetic	1	1	1	Negative Genetic
SEC16	YPL085W	COPII vesicle coat protein required for ER transport vesicle budding	genetic	1	1	1	Negative Genetic
SPC29	YPL124W	Inner plaque spindle pole body (SPB) component	genetic	1	1	1	Negative Genetic
SPN1	YPR133C	Protein involved in RNA polymerase II transcription	genetic	1	1	1	Negative Genetic
RXT2	YBR095C	Component of the histone deacetylase Rpd3L complex	genetic	1	1	1	Negative Genetic
YCR090C	YCR090C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	genetic	1	1	1	Negative Genetic
SPE1	YKL184W	Ornithine decarboxylase	genetic	1	1	1	Negative Genetic
UBX2	YML013W	Bridging factor involved in ER-associated protein degradation (ERAD)	genetic	1	1	1	Negative Genetic
RPS28A	YOR167C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
RPS6A	YPL090C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
SPO11	YHL022C	Meiosis-specific protein required for meiotic recombination	genetic	1	1	1	Negative Genetic
YJR084W	YJR084W	Protein that forms a complex with Thp3p	genetic	1	1	1	Negative Genetic
SWD1	YAR003W	Subunit of the COMPASS (Set1C) complex	genetic	1	1	1	Negative Genetic
YCL068C	YCL068C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
SYO1	YDL063C	Transport adaptor or symportin	genetic	1	1	1	Negative Genetic
RXT3	YDL076C	Component of the Rpd3L histone deacetylase complex	genetic	1	1	1	Negative Genetic
YOS9	YDR057W	ER quality-control lectin	genetic	1	1	1	Negative Genetic
RRP8	YDR083W	Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase	genetic	1	1	1	Negative Genetic
VPS64	YDR200C	Protein required for cytoplasm to vacuole targeting of proteins	genetic	1	1	1	Negative Genetic
SWM1	YDR260C	Subunit of the anaphase-promoting complex (APC)	genetic	1	1	1	Negative Genetic
SPT2	YER161C	Protein involved in negative regulation of transcription	genetic	1	1	1	Negative Genetic
SKI8	YGL213C	Ski complex component and WD-repeat protein	genetic	1	1	1	Negative Genetic
ZRT1	YGL255W	High-affinity zinc transporter of the plasma membrane	genetic	1	1	1	Negative Genetic
YGR122W	YGR122W	Protein that may be involved in pH regulation	genetic	1	1	1	Negative Genetic
SMI1	YGR229C	Protein involved in the regulation of cell wall synthesis	genetic	1	1	1	Negative Genetic
YHL008C	YHL008C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
SET1	YHR119W	Histone methyltransferase, subunit of the COMPASS (Set1C) complex	genetic	1	1	1	Negative Genetic
RRD1	YIL153W	Peptidyl-prolyl cis/trans-isomerase	genetic	1	1	1	Negative Genetic
RPS4A	YJR145C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
YLR154C-H	YLR154C-H	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
UBC12	YLR306W	Enzyme that mediates the conjugation of Rub1p	genetic	1	1	1	Negative Genetic
RPS29A	YLR388W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
SKI2	YLR398C	Ski complex component and putative RNA helicase	genetic	1	1	1	Negative Genetic
TRM9	YML014W	tRNA methyltransferase	genetic	1	1	1	Negative Genetic
YMR001C-A	YMR001C-A	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YMR175W-A	YMR175W-A	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
SPT21	YMR179W	Protein with a role in transcriptional silencing	genetic	1	1	1	Negative Genetic
UBP8	YMR223W	Ubiquitin-specific protease component of the SAGA acetylation complex	genetic	1	1	1	Negative Genetic
YNL067W-B	YNL067W-B	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YGP1	YNL160W	Cell wall-related secretory glycoprotein	genetic	1	1	1	Negative Genetic
YPT11	YNL304W	Rab GTPase	genetic	1	1	1	Negative Genetic
RTG1	YOL067C	Transcription factor (bHLH) involved in interorganelle communication	genetic	1	1	1	Negative Genetic
RPS19A	YOL121C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
RTS1	YOR014W	B-type regulatory subunit of protein phosphatase 2A (PP2A)	genetic	1	1	1	Negative Genetic
UAF30	YOR295W	Subunit of UAF (upstream activation factor) complex	genetic	1	1	1	Negative Genetic
YTA6	YPL074W	Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family	genetic	1	1	1	Negative Genetic
YPL108W	YPL108W	Cytoplasmic protein of unknown function	genetic	1	1	1	Negative Genetic
SDD4	YPR022C	Putative transcription factor, as suggested by computational analysis	genetic	1	1	1	Negative Genetic
SKI3	YPR189W	Ski complex component and TPR protein	genetic	1	1	1	Negative Genetic
PRT1	YOR361C	eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-MS
RPG1	YBR079C	eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-MS
RPG1	YBR079C	eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3)	genetic	1	1	1	Positive Genetic
GCD1	YOR260W	Gamma subunit of the translation initiation factor eIF2B	genetic	1	1	1	Positive Genetic
KAP95	YLR347C	Karyopherin beta	genetic	1	1	1	Negative Genetic
IMD2	YHR216W	Inosine monophosphate dehydrogenase	physical	1	1	1	Affinity Capture-MS
RBG2	YGR173W	Protein with a role in translation	physical	1	1	1	Affinity Capture-MS
AAH1	YNL141W	Adenine deaminase (adenine aminohydrolase)	physical	1	1	1	Affinity Capture-MS
AAH1	YNL141W	Adenine deaminase (adenine aminohydrolase)	genetic	1	1	1	Positive Genetic
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	Affinity Capture-RNA
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	genetic	1	1	1	Negative Genetic
LSG1	YGL099W	Putative GTPase involved in 60S ribosomal subunit biogenesis	physical	1	1	1	Affinity Capture-MS
KAP104	YBR017C	Transportin or cytosolic karyopherin beta 2	physical	1	1	1	Affinity Capture-MS
KAP104	YBR017C	Transportin or cytosolic karyopherin beta 2	genetic	1	1	1	Negative Genetic
NAM7	YMR080C	ATP-dependent RNA helicase of the SFI superfamily	physical	1	1	1	Affinity Capture-MS
NAM7	YMR080C	ATP-dependent RNA helicase of the SFI superfamily	genetic	1	1	1	Negative Genetic
OLA1	YBR025C	P-loop ATPase with similarity to human OLA1 and bacterial YchF	genetic	1	1	1	Negative Genetic
ADE4	YMR300C	Phosphoribosylpyrophosphate amidotransferase (PRPPAT)	physical	1	1	1	Affinity Capture-MS
APC1	YNL172W	Largest subunit of the Anaphase-Promoting Complex/Cyclosome	genetic	1	1	1	Negative Genetic
APC2	YLR127C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	1	1	1	Negative Genetic
ARC40	YBR234C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-MS
ARO1	YDR127W	Pentafunctional arom protein	genetic	1	1	1	Positive Genetic
ARP3	YJR065C	Essential component of the Arp2/3 complex	genetic	1	1	1	Negative Genetic
ASF1	YJL115W	Nucleosome assembly factor	genetic	1	1	1	Negative Genetic
CAF130	YGR134W	Subunit of the CCR4-NOT transcriptional regulatory complex	genetic	1	1	1	Negative Genetic
CDC14	YFR028C	Protein phosphatase required for mitotic exit	genetic	1	1	1	Dosage Rescue
CDC28	YBR160W	Cyclin-dependent kinase (CDK) catalytic subunit	physical	1	1	1	Affinity Capture-MS
CDC11	YJR076C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Negative Genetic
CDC12	YHR107C	Component of the septin ring that is required for cytokinesis	physical	1	1	1	Affinity Capture-MS
ERG26	YGL001C	C-3 sterol dehydrogenase	physical	1	1	1	Affinity Capture-MS
HDA1	YNL021W	Catalytic subunit of class II HDA1 histone deacetylase complex	genetic	1	1	1	Negative Genetic
RIX1	YHR197W	Component of the Rix1 complex and possibly pre-replicative complexes	genetic	1	1	1	Positive Genetic
NOG2	YNR053C	Putative GTPase	physical	1	1	1	Affinity Capture-MS
NOG2	YNR053C	Putative GTPase	genetic	1	1	1	Negative Genetic
BUD31	YCR063W	Component of the SF3b subcomplex of the U2 snRNP	genetic	1	1	1	Negative Genetic
CHC1	YGL206C	Clathrin heavy chain	physical	1	1	1	Affinity Capture-MS
CTK1	YKL139W	Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I)	genetic	1	1	1	Negative Genetic
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	physical	1	1	1	Affinity Capture-MS
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	genetic	1	1	1	Negative Genetic
DOA1	YKL213C	WD-repeat protein involved in ubiquitin-mediated protein degradation	physical	1	1	1	Affinity Capture-MS
EDE1	YBL047C	Scaffold protein involved in the formation of early endocytic sites	physical	1	1	1	Affinity Capture-MS
ELP2	YGR200C	Subunit of Elongator complex	physical	1	1	1	Affinity Capture-MS
ELP2	YGR200C	Subunit of Elongator complex	genetic	1	1	1	Negative Genetic
EMG1	YLR186W	Methyltransferase for rRNA	genetic	1	1	1	Negative Genetic
FIP1	YJR093C	Subunit of cleavage polyadenylation factor (CPF)	genetic	1	1	1	Positive Genetic
FPR1	YNL135C	Peptidyl-prolyl cis-trans isomerase (PPIase)	genetic	1	1	1	Negative Genetic
GCN2	YDR283C	Protein kinase	genetic	1	1	1	Negative Genetic
GDI1	YER136W	GDP dissociation inhibitor	physical	1	1	1	Affinity Capture-MS
HRP1	YOL123W	Subunit of cleavage factor I	physical	1	1	1	Affinity Capture-MS
HSL1	YKL101W	Nim1p-related protein kinase	genetic	1	1	1	Negative Genetic
KRR1	YCL059C	Nucleolar protein required for rRNA synthesis and ribosomal assembly	genetic	1	1	1	Negative Genetic
LAS17	YOR181W	Actin assembly factor	genetic	1	1	1	Negative Genetic
CRM1	YGR218W	Nuclear export factor, exportin	physical	1	1	1	Affinity Capture-MS
CRM1	YGR218W	Nuclear export factor, exportin	genetic	1	1	1	Negative Genetic
LCB1	YMR296C	Component of serine palmitoyltransferase	genetic	1	1	1	Negative Genetic
LSM7	YNL147W	Lsm (Like Sm) protein	genetic	1	1	1	Positive Genetic
INP2	YMR163C	Peroxisome-specific receptor important for peroxisome inheritance	genetic	1	1	1	Negative Genetic
MOT1	YPL082C	Essential protein involved in regulation of transcription	genetic	1	1	1	Negative Genetic
HRR25	YPL204W	Conserved casein kinase, monopolin subunit	physical	1	1	1	Affinity Capture-MS
IMG2	YCR071C	Mitochondrial ribosomal protein of the large subunit	genetic	1	1	1	Positive Genetic
MRP7	YNL005C	Mitochondrial ribosomal protein of the large subunit	genetic	1	1	1	Negative Genetic
MRM1	YOR201C	Ribose methyltransferase	genetic	1	1	1	Positive Genetic
HDA2	YDR295C	Subunit of HDA1 histone deacetylase complex	genetic	1	1	1	Negative Genetic
MPH1	YIR002C	3'-5' DNA helicase involved in error-free bypass of DNA lesions	genetic	1	1	1	Negative Genetic
ATG3	YNR007C	E2-like enzyme	genetic	1	1	1	Negative Genetic
INO80	YGL150C	Nucleosome spacing factor	physical	1	1	1	Affinity Capture-MS
INO80	YGL150C	Nucleosome spacing factor	genetic	1	1	1	Negative Genetic
ITC1	YGL133W	Subunit of ATP-dependent Isw2p-Itc1p chromatin remodeling complex	genetic	1	1	1	Negative Genetic
FAS2	YPL231W	Alpha subunit of fatty acid synthetase	genetic	1	1	1	Negative Genetic
NOT3	YIL038C	Component of the CCR4-NOT core complex, involved in mRNA decapping	genetic	1	1	1	Negative Genetic
NUP116	YMR047C	FG-nucleoporin component of central core of the nuclear pore complex	genetic	1	1	1	Negative Genetic
ORC2	YBR060C	Subunit of the origin recognition complex (ORC)	genetic	1	1	1	Positive Genetic
PAC10	YGR078C	Part of the heteromeric co-chaperone GimC/prefoldin complex	genetic	1	1	1	Positive Genetic
PAP1	YKR002W	Poly(A) polymerase	physical	1	1	1	Affinity Capture-MS
HMO1	YDR174W	Chromatin associated high mobility group (HMG) family member	genetic	1	1	1	Negative Genetic
PDB1	YBR221C	E1 beta subunit of the pyruvate dehydrogenase (PDH) complex	physical	1	1	1	Affinity Capture-MS
IDH2	YOR136W	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	1	1	1	Affinity Capture-MS
BLM10	YFL007W	Proteasome activator	physical	1	1	1	Affinity Capture-MS
HTA1	YDR225W	Histone H2A	genetic	1	1	1	Negative Genetic
PRP4	YPR178W	Splicing factor	genetic	1	1	1	Negative Genetic
PSE1	YMR308C	Karyopherin/importin that interacts with the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
PTC3	YBL056W	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-MS
PAA1	YDR071C	Polyamine acetyltransferase	physical	1	1	1	Affinity Capture-MS
NAB3	YPL190C	RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p)	genetic	1	1	1	Negative Genetic
GCN20	YFR009W	Positive regulator of the Gcn2p kinase activity	physical	1	1	1	Affinity Capture-MS
REF2	YDR195W	RNA-binding protein	genetic	1	1	1	Negative Genetic
RFA1	YAR007C	Subunit of heterotrimeric Replication Protein A (RPA)	genetic	1	1	1	Negative Genetic
RFC1	YOR217W	Subunit of heteropentameric Replication factor C (RF-C)	genetic	1	1	1	Negative Genetic
RFC3	YNL290W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Affinity Capture-MS
RPB10	YOR210W	RNA polymerase subunit ABC10-beta	genetic	1	1	1	Negative Genetic
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	genetic	1	1	1	Negative Genetic
RPL23A	YBL087C	Ribosomal 60S subunit protein L23A	physical	1	1	1	Affinity Capture-MS
RPL23A	YBL087C	Ribosomal 60S subunit protein L23A	genetic	1	1	1	Negative Genetic
ADE3	YGR204W	Cytoplasmic trifunctional enzyme	physical	1	1	1	Affinity Capture-MS
CSN9	YDR179C	Subunit of the Cop9 signalosome	genetic	1	1	1	Synthetic Growth Defect
PCI8	YIL071C	Possible shared subunit of Cop9 signalosome (CSN) and eIF3	genetic	1	1	1	Synthetic Growth Defect
CSI1	YMR025W	Subunit of the Cop9 signalosome	genetic	1	1	1	Synthetic Growth Defect
NUM1	YDR150W	Protein required for nuclear migration	genetic	1	1	1	Positive Genetic
NUP120	YKL057C	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
CSE1	YGL238W	Nuclear envelope protein that acts as a recycling factor	genetic	1	1	1	Negative Genetic
DUG1	YFR044C	Cys-Gly metallo-di-peptidase	physical	1	1	1	Affinity Capture-MS
LSB3	YFR024C-A	Protein containing a C-terminal SH3 domain	physical	1	1	1	Affinity Capture-MS
REG1	YDR028C	Regulatory subunit of type 1 protein phosphatase Glc7p	physical	1	1	1	Affinity Capture-MS
NAT1	YDL040C	Subunit of protein N-terminal acetyltransferase NatA	genetic	1	1	1	Negative Genetic
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-MS
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	genetic	1	1	1	Positive Genetic
NEW1	YPL226W	Translation termination and ribosome biogenesis factor	genetic	1	1	1	Negative Genetic
BCY1	YIL033C	Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA)	physical	1	1	1	Affinity Capture-MS
BRO1	YPL084W	Cytoplasmic class E vacuolar protein sorting (VPS) factor	genetic	1	1	1	Negative Genetic
DRS2	YAL026C	Trans-golgi network aminophospholipid translocase (flippase)	genetic	1	1	1	Positive Genetic
GET3	YDL100C	Guanine nucleotide exchange factor for Gpa1p	genetic	1	1	1	Negative Genetic
BNA3	YJL060W	Kynurenine aminotransferase	physical	1	1	1	Affinity Capture-MS
PUF3	YLL013C	Protein of the mitochondrial outer surface	physical	1	1	1	Affinity Capture-MS
FAR11	YNL127W	Protein involved in recovery from cell cycle arrest	genetic	1	1	1	Negative Genetic
CDC13	YDL220C	Single stranded DNA-binding protein found at TG1-3 telomere G-tails	genetic	1	1	1	Negative Genetic
DNM1	YLL001W	Dynamin-related GTPase involved in mitochondrial organization	physical	1	1	1	Affinity Capture-MS
CAR2	YLR438W	L-ornithine transaminase (OTAse)	physical	1	1	1	Affinity Capture-MS
ACO1	YLR304C	Aconitase	physical	1	1	1	Affinity Capture-MS
BBC1	YJL020C	Protein possibly involved in assembly of actin patches	physical	1	1	1	Affinity Capture-MS
AKL1	YBR059C	Ser/Thr protein kinase	physical	1	1	1	Affinity Capture-MS
NGL2	YMR285C	Protein involved in 5.8S rRNA processing	physical	1	1	1	Affinity Capture-MS
PYC1	YGL062W	Pyruvate carboxylase isoform	genetic	1	1	1	Negative Genetic
HYP2	YEL034W	Translation elongation factor eIF-5A	genetic	1	1	1	Negative Genetic
PHO85	YPL031C	Cyclin-dependent kinase	physical	1	1	1	Affinity Capture-MS
RNR2	YJL026W	Ribonucleotide-diphosphate reductase (RNR), small subunit	physical	1	1	1	Affinity Capture-MS
AAC3	YBR085W	Mitochondrial inner membrane ADP/ATP translocator	physical	1	1	1	Affinity Capture-MS
AAC3	YBR085W	Mitochondrial inner membrane ADP/ATP translocator	genetic	1	1	1	Negative Genetic
PLN1	YKR046C	Perilipin, involved in formation and stability of lipid droplets	physical	1	1	1	Affinity Capture-MS
GDE1	YPL110C	Glycerophosphocholine (GroPCho) phosphodiesterase	physical	1	1	1	Affinity Capture-MS
ARO4	YBR249C	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Affinity Capture-MS
PMA2	YPL036W	Plasma membrane H+-ATPase	genetic	1	1	1	Positive Genetic
PRO1	YDR300C	Gamma-glutamyl kinase	physical	1	1	1	Affinity Capture-MS
AAT2	YLR027C	Cytosolic aspartate aminotransferase involved in nitrogen metabolism	physical	1	1	1	Affinity Capture-MS
GET2	YER083C	Subunit of the GET complex	genetic	1	1	1	Negative Genetic
RGP1	YDR137W	Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p)	genetic	1	1	1	Positive Genetic
CCT5	YJR064W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-MS
QCR2	YPR191W	Subunit 2 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Affinity Capture-MS
GPD2	YOL059W	NAD-dependent glycerol 3-phosphate dehydrogenase	physical	1	1	1	Affinity Capture-MS
PRS3	YHL011C	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Affinity Capture-MS
ATG12	YBR217W	Ubiquitin-like modifier involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-MS
CYC8	YBR112C	General transcriptional co-repressor	physical	1	1	1	Affinity Capture-MS
CYC8	YBR112C	General transcriptional co-repressor	genetic	1	1	1	Negative Genetic
MAE1	YKL029C	Mitochondrial malic enzyme	physical	1	1	1	Affinity Capture-MS
PBR1	YNL181W	Putative oxidoreductase	genetic	1	1	1	Positive Genetic
ILV3	YJR016C	Dihydroxyacid dehydratase	physical	1	1	1	Affinity Capture-MS
RHO1	YPR165W	GTP-binding protein of the rho subfamily of Ras-like proteins	physical	1	1	1	Affinity Capture-MS
RHO1	YPR165W	GTP-binding protein of the rho subfamily of Ras-like proteins	genetic	1	1	1	Negative Genetic
AIP1	YMR092C	Actin cortical patch component	physical	1	1	1	Affinity Capture-MS
PDS1	YDR113C	Securin	physical	1	1	1	Biochemical Activity
ERG1	YGR175C	Squalene epoxidase	physical	1	1	1	Affinity Capture-MS
HRT3	YLR097C	Putative SCF-ubiquitin ligase F-box protein	physical	1	1	1	Affinity Capture-MS
GPP2	YER062C	DL-glycerol-3-phosphate phosphatase involved in glycerol biosynthesis	physical	1	1	1	Affinity Capture-MS
ADH3	YMR083W	Mitochondrial alcohol dehydrogenase isozyme III	physical	1	1	1	Affinity Capture-MS
IMD4	YML056C	Inosine monophosphate dehydrogenase	physical	1	1	1	Affinity Capture-MS
APE1	YKL103C	Vacuolar aminopeptidase yscI	physical	1	1	1	Affinity Capture-MS
DSK2	YMR276W	Nuclear-enriched ubiquitin-like polyubiquitin-binding protein	genetic	1	1	1	Synthetic Rescue
HMF1	YER057C	Member of the p14.5 protein family	physical	1	1	1	Affinity Capture-MS
HSL7	YBR133C	Protein arginine N-methyltransferase	genetic	1	1	1	Negative Genetic
GRS1	YBR121C	Cytoplasmic and mitochondrial glycyl-tRNA synthase	genetic	1	1	1	Negative Genetic
POL30	YBR088C	Proliferating cell nuclear antigen (PCNA)	physical	1	1	1	Affinity Capture-MS
CDC37	YDR168W	Essential Hsp90p co-chaperone	physical	1	1	1	Affinity Capture-MS
CDC37	YDR168W	Essential Hsp90p co-chaperone	genetic	1	1	1	Negative Genetic
EST1	YLR233C	TLC1 RNA-associated factor involved in telomere length regulation	physical	1	1	1	Affinity Capture-MS
GPN3	YLR243W	Putative GTPase with a role in biogenesis of RNA pol II and polIII	physical	1	1	1	Affinity Capture-MS
HOM6	YJR139C	Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)	physical	1	1	1	Affinity Capture-MS
MAK11	YKL021C	Protein involved in an early step of 60S ribosomal subunit biogenesis	genetic	1	1	1	Negative Genetic
HUL5	YGL141W	Multiubiquitin chain assembly factor (E4)	physical	1	1	1	Affinity Capture-Western
GRX1	YCL035C	Glutathione-dependent disulfide oxidoreductase	physical	1	1	1	Affinity Capture-MS
CDC15	YAR019C	Hippo-like kinase of the Mitotic Exit Network	genetic	1	1	1	Negative Genetic
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	physical	1	1	1	Affinity Capture-MS
ISU1	YPL135W	Conserved protein of the mitochondrial matrix	genetic	1	1	1	Negative Genetic
MAG1	YER142C	3-methyl-adenine DNA glycosylase	genetic	1	1	1	Negative Genetic
RAS2	YNL098C	GTP-binding protein	physical	1	1	1	PCA
DPB11	YJL090C	DNA replication initiation protein	genetic	1	1	1	Positive Genetic
RAD50	YNL250W	Subunit of MRX complex with Mre11p and Xrs2p	physical	1	1	1	Affinity Capture-MS
RAD50	YNL250W	Subunit of MRX complex with Mre11p and Xrs2p	genetic	1	1	1	Negative Genetic
RCN2	YOR220W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
PGM1	YKL127W	Phosphoglucomutase, minor isoform	physical	1	1	1	Affinity Capture-MS
ILV2	YMR108W	Acetolactate synthase	physical	1	1	1	Affinity Capture-MS
HAL5	YJL165C	Snf1p-related nutrient-responsive protein kinase	physical	1	1	1	Affinity Capture-MS
RGI1	YER067W	Protein involved in energy metabolism under respiratory conditions	physical	1	1	1	Affinity Capture-MS
CIK1	YMR198W	Kinesin-associated protein	genetic	1	1	1	Negative Genetic
ARF2	YDL137W	ADP-ribosylation factor	physical	1	1	1	Affinity Capture-MS
MAP2	YBL091C	Methionine aminopeptidase	genetic	1	1	1	Negative Genetic
MCK1	YNL307C	Dual-specificity ser/thr and tyrosine protein kinase	genetic	1	1	1	Negative Genetic
LSM8	YJR022W	Lsm (Like Sm) protein	genetic	1	1	1	Negative Genetic
PTC2	YER089C	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-MS
FUB1	YCR076C	Proteasome-binding protein	physical	1	1	1	Affinity Capture-Western
DEF1	YKL054C	RNAPII degradation factor	physical	1	1	1	Affinity Capture-MS
DEF1	YKL054C	RNAPII degradation factor	genetic	1	1	1	Negative Genetic
DBF2	YGR092W	Ser/Thr kinase involved in transcription and stress response	physical	1	1	1	Affinity Capture-MS
FUS3	YBL016W	Mitogen-activated serine/threonine protein kinase involved in mating	physical	1	1	1	Affinity Capture-MS
LEM3	YNL323W	Membrane protein of the plasma membrane and ER	genetic	1	1	1	Negative Genetic
GBP2	YCL011C	Poly(A+) RNA-binding protein	physical	1	1	1	Affinity Capture-MS
CBR1	YIL043C	Cytochrome b reductase and NADH-dependent reductase for Dph3p	physical	1	1	1	Affinity Capture-MS
ADH6	YMR318C	NADPH-dependent medium chain alcohol dehydrogenase	physical	1	1	1	Affinity Capture-MS
PMI40	YER003C	Mannose-6-phosphate isomerase	physical	1	1	1	Affinity Capture-MS
PRS2	YER099C	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Affinity Capture-Western
MGT1	YDL200C	DNA repair methyltransferase (6-O-methylguanine-DNA methylase)	genetic	1	1	1	Negative Genetic
NUP133	YKR082W	Subunit of Nup84p subcomplex of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-MS
MMS22	YLR320W	Subunit of E3 ubiquitin ligase complex involved in replication repair	physical	1	1	1	Affinity Capture-MS
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	physical	1	1	1	Affinity Capture-MS
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	physical	1	1	1	Affinity Capture-MS
CUE5	YOR042W	Ubiquitin-binding protein	physical	1	1	1	Affinity Capture-MS
DAD2	YKR083C	Essential subunit of the Dam1 complex (aka DASH complex)	genetic	1	1	1	Negative Genetic
ECM11	YDR446W	Meiosis-specific protein	genetic	1	1	1	Negative Genetic
DID4	YKL002W	Class E Vps protein of the ESCRT-III complex	genetic	1	1	1	Negative Genetic
ADE2	YOR128C	Phosphoribosylaminoimidazole carboxylase	physical	1	1	1	Affinity Capture-MS
FMN1	YDR236C	Riboflavin kinase, produces riboflavin monophosphate (FMN)	genetic	1	1	1	Negative Genetic
FIG1	YBR040W	Integral membrane protein required for efficient mating	physical	1	1	1	Affinity Capture-MS
LST7	YGR057C	Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p	genetic	1	1	1	Negative Genetic
GCN4	YEL009C	bZIP transcriptional activator of amino acid biosynthetic genes	physical	1	1	1	Reconstituted Complex
NUF2	YOL069W	Component of the kinetochore-associated Ndc80 complex	genetic	1	1	1	Negative Genetic
HSP10	YOR020C	Mitochondrial matrix co-chaperonin	genetic	1	1	1	Positive Genetic
PEX21	YGR239C	Peroxin required for peroxisomal matrix protein targeting	genetic	1	1	1	Negative Genetic
PKC1	YBL105C	Protein serine/threonine kinase	genetic	1	1	1	Negative Genetic
RAD4	YER162C	Damaged-DNA binding subunit of Nuclear Excision Repair Factor 2	genetic	1	1	1	Negative Genetic
CDC34	YDR054C	Ubiquitin-conjugating enzyme (E2)	genetic	1	1	1	Negative Genetic
PRM3	YPL192C	Protein required for nuclear envelope fusion during karyogamy	physical	1	1	1	Affinity Capture-MS
CHA4	YLR098C	DNA binding transcriptional activator	genetic	1	1	1	Negative Genetic
KTI12	YKL110C	Protein that plays a role in modification of tRNA wobble nucleosides	genetic	1	1	1	Negative Genetic
MET14	YKL001C	Adenylylsulfate kinase	physical	1	1	1	Affinity Capture-MS
OCA2	YNL056W	Protein of unknown function	genetic	1	1	1	Negative Genetic
NST1	YNL091W	Translational inhibitor and suppressor of proteasome-assembly defects	genetic	1	1	1	Negative Genetic
BOS1	YLR078C	v-SNARE (vesicle specific SNAP receptor)	genetic	1	1	1	Positive Genetic
APC11	YDL008W	Catalytic core subunit, Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	1	1	1	Negative Genetic
CWC15	YDR163W	Non-essential protein involved in pre-mRNA splicing	genetic	1	1	1	Negative Genetic
ELP3	YPL086C	Subunit of Elongator complex	genetic	1	1	1	Negative Genetic
ELP4	YPL101W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	genetic	1	1	1	Negative Genetic
IKI1	YHR187W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	genetic	1	1	1	Negative Genetic
RPL4A	YBR031W	Ribosomal 60S subunit protein L4A	genetic	1	1	1	Negative Genetic
PEX5	YDR244W	Peroxisomal membrane signal receptor for peroxisomal matrix proteins	genetic	1	1	1	Negative Genetic
NFI1	YOR156C	SUMO E3 ligase	physical	1	1	1	Affinity Capture-MS
RPL23B	YER117W	Ribosomal 60S subunit protein L23B	genetic	1	1	1	Negative Genetic
BRE5	YNR051C	Ubiquitin protease cofactor	genetic	1	1	1	Positive Genetic
CET1	YPL228W	RNA 5'-triphosphatase involved in mRNA 5' capping	genetic	1	1	1	Positive Genetic
MSN2	YMR037C	Stress-responsive transcriptional activator	physical	1	1	1	Affinity Capture-MS
ARP5	YNL059C	Nuclear actin-related protein involved in chromatin remodeling	physical	1	1	1	Affinity Capture-MS
IES2	YNL215W	Protein that associates with the INO80 chromatin remodeling complex	genetic	1	1	1	Negative Genetic
BUR6	YER159C	Subunit of a heterodimeric NC2 transcription regulator complex	genetic	1	1	1	Negative Genetic
BFR1	YOR198C	Component of mRNP complexes associated with polyribosomes	physical	1	1	1	Affinity Capture-MS
BRN1	YBL097W	Subunit of the condensin complex	genetic	1	1	1	Negative Genetic
DBF4	YDR052C	Regulatory subunit of Cdc7p-Dbf4p kinase complex	genetic	1	1	1	Negative Genetic
MPS1	YDL028C	Dual-specificity kinase	genetic	1	1	1	Negative Genetic
MYO5	YMR109W	One of two type I myosin motors	physical	1	1	1	Affinity Capture-MS
ORC3	YLL004W	Subunit of the origin recognition complex (ORC)	genetic	1	1	1	Positive Genetic
PNG1	YPL096W	Conserved peptide N-glycanase	physical	1	1	1	Affinity Capture-MS
PAM18	YLR008C	Subunit of the import motor (PAM complex)	genetic	1	1	1	Negative Genetic
PEP7	YDR323C	Adaptor protein involved in vesicle-mediated vacuolar protein sorting	genetic	1	1	1	Negative Genetic
DPH2	YKL191W	Protein required for synthesis of diphthamide	physical	1	1	1	Affinity Capture-MS
KTI11	YBL071W-A	Zn-ribbon protein that co-purifies with Dph1 and Dph2	genetic	1	1	1	Negative Genetic
MBF1	YOR298C-A	Transcriptional coactivator	physical	1	1	1	Affinity Capture-MS
MOB1	YIL106W	Component of the mitotic exit network	physical	1	1	1	Proximity Label-MS
MOB1	YIL106W	Component of the mitotic exit network	genetic	1	1	1	Negative Genetic
NUP170	YBL079W	Subunit of inner ring of nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
MPT5	YGL178W	mRNA-binding protein of the PUF family	genetic	1	1	1	Negative Genetic
ABF1	YKL112W	DNA binding protein with possible chromatin-reorganizing activity	physical	1	1	1	Affinity Capture-MS
ABF1	YKL112W	DNA binding protein with possible chromatin-reorganizing activity	genetic	1	1	1	Negative Genetic
MCM7	YBR202W	Component of the Mcm2-7 hexameric helicase complex	genetic	1	1	1	Negative Genetic
ESC2	YDR363W	Sumo-like domain protein	genetic	1	1	1	Positive Genetic
INP53	YOR109W	Polyphosphatidylinositol phosphatase	physical	1	1	1	Affinity Capture-MS
HMT1	YBR034C	Nuclear SAM-dependent mono- and asymmetric methyltransferase	physical	1	1	1	Affinity Capture-MS
PRP16	YKR086W	DEAH-box RNA helicase	genetic	1	1	1	Negative Genetic
RGD1	YBR260C	GTPase-activating protein (RhoGAP) for Rho3p and Rho4p	physical	1	1	1	Affinity Capture-MS
RGD1	YBR260C	GTPase-activating protein (RhoGAP) for Rho3p and Rho4p	genetic	1	1	1	Negative Genetic
RGD2	YFL047W	GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p	physical	1	1	1	Affinity Capture-MS
BAT2	YJR148W	Cytosolic branched-chain amino acid (BCAA) aminotransferase	physical	1	1	1	Affinity Capture-MS
NIP100	YPL174C	Large subunit of the dynactin complex	genetic	1	1	1	Positive Genetic
PFY1	YOR122C	Profilin	genetic	1	1	1	Negative Genetic
NCP1	YHR042W	NADP-cytochrome P450 reductase	physical	1	1	1	Affinity Capture-MS
RPL25	YOL127W	Ribosomal 60S subunit protein L25	physical	1	1	1	Affinity Capture-MS
PMT1	YDL095W	Protein O-mannosyltransferase of the ER membrane	physical	1	1	1	Affinity Capture-MS
PMT4	YJR143C	Protein O-mannosyltransferase	genetic	1	1	1	Negative Genetic
RIM20	YOR275C	Protein involved in proteolytic activation of Rim101p	genetic	1	1	1	Negative Genetic
NUP188	YML103C	Subunit of the inner ring of the nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
ENT5	YDR153C	Protein containing an N-terminal epsin-like domain	genetic	1	1	1	Negative Genetic
ATG10	YLL042C	Conserved E2-like conjugating enzyme	genetic	1	1	1	Negative Genetic
BET4	YJL031C	Alpha subunit of Type II geranylgeranyltransferase	genetic	1	1	1	Positive Genetic
HBT1	YDL223C	Shmoo tip protein, substrate of Hub1p ubiquitin-like protein	physical	1	1	1	Affinity Capture-MS
ERV14	YGL054C	COPII-coated vesicle protein	physical	1	1	1	Affinity Capture-MS
RNR4	YGR180C	Ribonucleotide-diphosphate reductase (RNR) small subunit	genetic	1	1	1	Negative Genetic
MON2	YNL297C	Protein with a role in endocytosis and vacuole integrity	genetic	1	1	1	Positive Genetic
EAF7	YNL136W	Subunit of the NuA4 histone acetyltransferase complex	genetic	1	1	1	Positive Genetic
EFT1	YOR133W	Elongation factor 2 (EF-2), also encoded by EFT2	physical	1	1	1	Affinity Capture-MS
RPL18B	YNL301C	Ribosomal 60S subunit protein L18B	physical	1	1	1	Affinity Capture-MS
PER33	YLR064W	Protein that localizes to the endoplasmic reticulum	genetic	1	1	1	Negative Genetic
RPL14B	YHL001W	Ribosomal 60S subunit protein L14B	genetic	1	1	1	Negative Genetic
GAB1	YLR459W	Subunit of the glycosylphosphatidylinositol transamidase complex	genetic	1	1	1	Negative Genetic
RPL15A	YLR029C	Ribosomal 60S subunit protein L15A	physical	1	1	1	Affinity Capture-MS
RPL15A	YLR029C	Ribosomal 60S subunit protein L15A	genetic	1	1	1	Negative Genetic
ERG5	YMR015C	C-22 sterol desaturase	physical	1	1	1	Affinity Capture-MS
ORM2	YLR350W	Protein that mediates sphingolipid homeostasis	genetic	1	1	1	Negative Genetic
PDS5	YMR076C	Cohesion maintenance factor	genetic	1	1	1	Negative Genetic
ILV6	YCL009C	Regulatory subunit of acetolactate synthase	physical	1	1	1	Affinity Capture-MS
MEU1	YLR017W	Methylthioadenosine phosphorylase (MTAP)	physical	1	1	1	Affinity Capture-MS
MEU1	YLR017W	Methylthioadenosine phosphorylase (MTAP)	genetic	1	1	1	Negative Genetic
CRG1	YHR209W	S-AdoMet-dependent methyltransferase involved in lipid homeostasis	physical	1	1	1	Affinity Capture-MS
RPL16B	YNL069C	Ribosomal 60S subunit protein L16B	physical	1	1	1	Affinity Capture-MS
HSP26	YBR072W	Small heat shock protein (sHSP) with chaperone activity	physical	1	1	1	Affinity Capture-MS
BTS1	YPL069C	Geranylgeranyl diphosphate synthase (GGPPS)	genetic	1	1	1	Positive Genetic
FRA1	YLL029W	Protein involved in negative regulation of iron regulon transcription	physical	1	1	1	Affinity Capture-MS
ASG7	YJL170C	Protein that regulates signaling from G protein beta subunit Ste4p	physical	1	1	1	Affinity Capture-MS
CAN1	YEL063C	Plasma membrane arginine permease	physical	1	1	1	Affinity Capture-Western
MXR1	YER042W	Methionine-S-sulfoxide reductase	physical	1	1	1	Affinity Capture-MS
GPI2	YPL076W	Protein involved in the synthesis of GlcNAc-PI	genetic	1	1	1	Negative Genetic
RPL40A	YIL148W	Ubiquitin-ribosomal 60S subunit protein L40A fusion protein	genetic	1	1	1	Negative Genetic
KRE2	YDR483W	Alpha1,2-mannosyltransferase of the Golgi	physical	1	1	1	Affinity Capture-MS
MRH1	YDR033W	Protein that localizes primarily to the plasma membrane	physical	1	1	1	Affinity Capture-MS
NCE102	YPR149W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
MET17	YLR303W	O-acetyl homoserine-O-acetyl serine sulfhydrylase	physical	1	1	1	Affinity Capture-MS
BDH1	YAL060W	NAD-dependent (R,R)-butanediol dehydrogenase	physical	1	1	1	Affinity Capture-MS
HSP12	YFL014W	Plasma membrane protein involved in maintaining membrane organization	physical	1	1	1	Affinity Capture-MS
MAP1	YLR244C	Methionine aminopeptidase	physical	1	1	1	Affinity Capture-MS
IFA38	YBR159W	Microsomal beta-keto-reductase	physical	1	1	1	Affinity Capture-MS
RPL43B	YJR094W-A	Ribosomal 60S subunit protein L43B	physical	1	1	1	Affinity Capture-MS
NFS1	YCL017C	Cysteine desulfurase involved in iron-sulfur cluster biogenesis	genetic	1	1	1	Negative Genetic
HRQ1	YDR291W	3'-5' DNA helicase of the conserved RecQ family	genetic	1	1	1	Positive Genetic
NTH1	YDR001C	Neutral trehalase, degrades trehalose	physical	1	1	1	Affinity Capture-MS
HXK1	YFR053C	Hexokinase isoenzyme 1	physical	1	1	1	Affinity Capture-MS
FCF2	YLR051C	Nucleolar protein involved in the early steps of 35S rRNA processing	genetic	1	1	1	Negative Genetic
PUF4	YGL014W	Member of the PUF protein family	physical	1	1	1	Affinity Capture-MS
MRPL17	YNL252C	Mitochondrial ribosomal protein of the large subunit	genetic	1	1	1	Positive Genetic
GUK1	YDR454C	Guanylate kinase	physical	1	1	1	Affinity Capture-MS
ISD11	YER048W-A	Cysteine desulfurase (Nfs1p) activator	genetic	1	1	1	Negative Genetic
DDR48	YMR173W	DNA damage-responsive protein	physical	1	1	1	Affinity Capture-MS
MET10	YFR030W	Subunit alpha of assimilatory sulfite reductase	physical	1	1	1	Affinity Capture-MS
RIM8	YGL045W	Protein involved in proteolytic activation of Rim101p	genetic	1	1	1	Negative Genetic
CRS1	YNL247W	Cysteinyl-tRNA synthetase	physical	1	1	1	Affinity Capture-MS
CUE3	YGL110C	Subunit of ribosome-associated quality control trigger complex (RQT)	genetic	1	1	1	Negative Genetic
PPT1	YGR123C	Protein serine/threonine phosphatase	physical	1	1	1	Affinity Capture-MS
PPX1	YHR201C	Exopolyphosphatase	physical	1	1	1	Affinity Capture-MS
GCD14	YJL125C	Subunit of tRNA (1-methyladenosine) methyltransferase	genetic	1	1	1	Negative Genetic
OLE1	YGL055W	Delta(9) fatty acid desaturase	physical	1	1	1	Affinity Capture-MS
RIA1	YNL163C	Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis	genetic	1	1	1	Negative Genetic
ATG33	YLR356W	Mitochondrial mitophagy-specific protein	genetic	1	1	1	Negative Genetic
CUZ1	YNL155W	Protein with a role in the ubiquitin-proteasome pathway	physical	1	1	1	Affinity Capture-Western
ADE12	YNL220W	Adenylosuccinate synthase	physical	1	1	1	Affinity Capture-MS
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	physical	1	1	1	Affinity Capture-RNA
ERV2	YPR037C	Flavin-linked sulfhydryl oxidase localized to the ER lumen	physical	1	1	1	Affinity Capture-MS
RIM21	YNL294C	pH sensor molecule, component of the RIM101 pathway	genetic	1	1	1	Negative Genetic
LAG2	YOL025W	Protein that negatively regulates the SCF E3-ubiquitin ligase	genetic	1	1	1	Negative Genetic
NPT1	YOR209C	Nicotinate phosphoribosyltransferase	physical	1	1	1	Affinity Capture-MS
ALD4	YOR374W	Mitochondrial aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-MS
CYC7	YEL039C	Cytochrome c isoform 2, expressed under hypoxic conditions	physical	1	1	1	Affinity Capture-MS
OXP1	YKL215C	5-oxoprolinase	physical	1	1	1	Affinity Capture-MS
FCY1	YPR062W	Cytosine deaminase	physical	1	1	1	Affinity Capture-MS
PHO13	YDL236W	Conserved phosphatase acting as a metabolite repair enzyme	physical	1	1	1	Affinity Capture-MS
ARO3	YDR035W	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Affinity Capture-MS
RPL4B	YDR012W	Ribosomal 60S subunit protein L4B	physical	1	1	1	Affinity Capture-MS
ACL4	YDR161W	Specific assembly chaperone for ribosomal protein Rpl4a/Rpl4b	physical	1	1	1	Affinity Capture-MS
RPL17B	YJL177W	Ribosomal 60S subunit protein L17B	physical	1	1	1	Affinity Capture-MS
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	physical	1	1	1	Affinity Capture-MS
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	genetic	1	1	1	Negative Genetic
RPL8A	YHL033C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Affinity Capture-MS
RPL33B	YOR234C	Ribosomal 60S subunit protein L33B	physical	1	1	1	Affinity Capture-MS
RPL33B	YOR234C	Ribosomal 60S subunit protein L33B	genetic	1	1	1	Negative Genetic
RPL43A	YPR043W	Ribosomal 60S subunit protein L43A	genetic	1	1	1	Negative Genetic
RPL6A	YML073C	Ribosomal 60S subunit protein L6A	physical	1	1	1	Affinity Capture-MS
RPL6A	YML073C	Ribosomal 60S subunit protein L6A	genetic	1	1	1	Negative Genetic
GVP36	YIL041W	BAR domain protein that localizes to early and late Golgi vesicles	physical	1	1	1	Affinity Capture-MS
IDI1	YPL117C	Isopentenyl diphosphate:dimethylallyl diphosphate isomerase	physical	1	1	1	Affinity Capture-MS
RPL35B	YDL136W	Ribosomal 60S subunit protein L35B	physical	1	1	1	Affinity Capture-MS
RPL36A	YMR194W	Ribosomal 60S subunit protein L36A	genetic	1	1	1	Negative Genetic
RPL34A	YER056C-A	Ribosomal 60S subunit protein L34A	genetic	1	1	1	Negative Genetic
ABP140	YOR239W	AdoMet-dependent tRNA methyltransferase and actin binding protein	physical	1	1	1	Affinity Capture-MS
CMK2	YOL016C	Calmodulin-dependent protein kinase	physical	1	1	1	Affinity Capture-MS
DFM1	YDR411C	Endoplasmic reticulum (ER) localized protein	physical	1	1	1	Affinity Capture-MS
PDX3	YBR035C	Pyridoxine (pyridoxamine) phosphate oxidase	physical	1	1	1	Affinity Capture-MS
NMT1	YLR195C	N-myristoyl transferase	genetic	1	1	1	Negative Genetic
MNR2	YKL064W	Vacuolar membrane protein required for magnesium homeostasis	genetic	1	1	1	Negative Genetic
HIS5	YIL116W	Histidinol-phosphate aminotransferase	physical	1	1	1	Affinity Capture-MS
RNH70	YGR276C	3'-5' exoribonuclease	physical	1	1	1	Affinity Capture-MS
GAS3	YMR215W	Putative 1,3-beta-glucanosyltransferase	genetic	1	1	1	Negative Genetic
MET2	YNL277W	L-homoserine-O-acetyltransferase	genetic	1	1	1	Negative Genetic
PGA2	YNL149C	Essential protein required for maturation of Gas1p and Pho8p	genetic	1	1	1	Positive Genetic
EOS1	YNL080C	Protein involved in N-glycosylation	genetic	1	1	1	Negative Genetic
CYT1	YOR065W	Cytochrome c1	physical	1	1	1	Affinity Capture-MS
GPI19	YDR437W	Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI	genetic	1	1	1	Positive Genetic
RAD57	YDR004W	Protein that stimulates strand exchange	genetic	1	1	1	Negative Genetic
KTR1	YOR099W	Alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-MS
GSC2	YGR032W	Catalytic subunit of 1,3-beta-glucan synthase	physical	1	1	1	Affinity Capture-MS
OSH6	YKR003W	Oxysterol-binding phosphatidylserine transferase	physical	1	1	1	Affinity Capture-MS
RIB1	YBL033C	GTP cyclohydrolase II	physical	1	1	1	Affinity Capture-MS
ASP1	YDR321W	Cytosolic L-asparaginase, involved in asparagine catabolism	physical	1	1	1	Affinity Capture-MS
MRX18	YBR056W	Putative glycoside hydrolase of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-MS
HEM2	YGL040C	Aminolevulinate dehydratase	physical	1	1	1	Affinity Capture-MS
RIM13	YMR154C	Calpain-like cysteine protease	genetic	1	1	1	Negative Genetic
CHS2	YBR038W	Chitin synthase II	genetic	1	1	1	Negative Genetic
MDM34	YGL219C	Mitochondrial component of the ERMES complex	genetic	1	1	1	Synthetic Growth Defect
PCS60	YBR222C	Oxalyl-CoA synthetase	physical	1	1	1	Affinity Capture-MS
NPR1	YNL183C	Protein kinase	physical	1	1	1	Affinity Capture-MS
KIP3	YGL216W	Kinesin-related antiparallel sliding motor protein	genetic	1	1	1	Negative Genetic
RER2	YBR002C	Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1	genetic	1	1	1	Positive Genetic
RBS1	YDL189W	Protein involved in assembly of the RNA Pol III complex	genetic	1	1	1	Negative Genetic
GPI13	YLL031C	ER membrane localized phosphoryltransferase	genetic	1	1	1	Positive Genetic
NIT3	YLR351C	Nit protein	physical	1	1	1	Affinity Capture-MS
RMR1	YGL250W	Protein required for meiotic recombination and gene conversion	genetic	1	1	1	Positive Genetic
NRE1	YIR035C	Putative cytoplasmic short-chain dehydrogenase/reductase	physical	1	1	1	Affinity Capture-MS
IRC24	YIR036C	Putative benzil reductase	physical	1	1	1	Affinity Capture-MS
CHO1	YER026C	Phosphatidylserine synthase	physical	1	1	1	Affinity Capture-MS
DAK1	YML070W	Dihydroxyacetone kinase	physical	1	1	1	Affinity Capture-MS
DAN4	YJR151C	Cell wall mannoprotein	genetic	1	1	1	Negative Genetic
BSC4	YNL269W	Protein of unknown function	genetic	1	1	1	Negative Genetic
OPI3	YJR073C	Methylene-fatty-acyl-phospholipid synthase	physical	1	1	1	Affinity Capture-MS
MET13	YGL125W	Major isozyme of methylenetetrahydrofolate reductase	physical	1	1	1	Affinity Capture-MS
QRI1	YDL103C	UDP-N-acetylglucosamine pyrophosphorylase	physical	1	1	1	Affinity Capture-MS
NCS2	YNL119W	Protein required for uridine thiolation of Lys(UUU) and Glu(UUC) tRNAs	genetic	1	1	1	Negative Genetic
HIS1	YER055C	ATP phosphoribosyltransferase	physical	1	1	1	Affinity Capture-MS
RPL33A	YPL143W	Ribosomal 60S subunit protein L33A	physical	1	1	1	Affinity Capture-MS
MYG1	YER156C	Protein involved in mitochondrial function	physical	1	1	1	Affinity Capture-MS
CBP4	YGR174C	Mitochondrial protein required for assembly of cytochrome bc1 complex	genetic	1	1	1	Negative Genetic
COQ21	YBR230W-A	Mitochondrial protein of unknown function	genetic	1	1	1	Negative Genetic
LSC2	YGR244C	Beta subunit of succinyl-CoA ligase	physical	1	1	1	Affinity Capture-MS
FSH3	YOR280C	Putative serine hydrolase	physical	1	1	1	Affinity Capture-MS
MSC1	YML128C	Protein of unknown function	genetic	1	1	1	Positive Genetic
LOG1	YJL055W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-MS
GLD1	YPR109W	Component of Dsc E3 ligase complex in Golgi and endosomes	genetic	1	1	1	Negative Genetic
MCH4	YOL119C	Protein with similarity to mammalian monocarboxylate permeases	genetic	1	1	1	Negative Genetic
MIC10	YCL057C-A	Conserved component of the MICOS complex	genetic	1	1	1	Positive Genetic
MSS2	YDL107W	Peripherally bound inner membrane protein of the mitochondrial matrix	genetic	1	1	1	Negative Genetic
DFR1	YOR236W	Dihydrofolate reductase involved in tetrahydrofolate biosynthesis	genetic	1	1	1	Positive Genetic
ENB1	YOL158C	Ferric enterobactin transmembrane transporter	physical	1	1	1	Affinity Capture-MS
GCV2	YMR189W	P subunit of the mitochondrial glycine decarboxylase complex	physical	1	1	1	Affinity Capture-MS
NMA111	YNL123W	Serine protease and general molecular chaperone	physical	1	1	1	Affinity Capture-MS
RBK1	YCR036W	Ribokinase, phosphorylates ribose to ribose-5-phosphate	physical	1	1	1	Affinity Capture-MS
RPL21B	YPL079W	Ribosomal 60S subunit protein L21B	physical	1	1	1	Affinity Capture-MS
RPL21B	YPL079W	Ribosomal 60S subunit protein L21B	genetic	1	1	1	Negative Genetic
PIC2	YER053C	Mitochondrial copper and phosphate carrier	genetic	1	1	1	Negative Genetic
NHX1	YDR456W	Na+/H+ and K+/H+ exchanger	genetic	1	1	1	Negative Genetic
RIB2	YOL066C	Bifunctional DRAP deaminase tRNA:pseudouridine synthase	genetic	1	1	1	Negative Genetic
CTS2	YDR371W	Putative chitinase	genetic	1	1	1	Negative Genetic
NAR1	YNL240C	Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery	genetic	1	1	1	Positive Genetic
IRC21	YMR073C	Protein of unknown function	genetic	1	1	1	Negative Genetic
MRX11	YPL041C	Protein that associates with mitochondrial ribosome	genetic	1	1	1	Negative Genetic
RAD61	YDR014W	Subunit of a complex that inhibits sister chromatid cohesion	genetic	1	1	1	Negative Genetic
LDB16	YCL005W	Protein involved in lipid droplet (LD) assembly	genetic	1	1	1	Negative Genetic
HXT13	YEL069C	Putative transmembrane polyol transporter	genetic	1	1	1	Negative Genetic
RCH1	YMR034C	Negative regulator of cytosolic calcium homeostasis	genetic	1	1	1	Negative Genetic