GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
IME1	YJR094C	Master regulator of meiosis that is active only during meiotic events	physical	7	2	7	Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Two-hybrid, Co-localization
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	physical	7	4	6	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Biochemical Activity, Co-localization
HDA1	YNL021W	Catalytic subunit of class II HDA1 histone deacetylase complex	genetic	7	2	5	Positive Genetic, Positive Genetic, Positive Genetic, Synthetic Rescue, Positive Genetic, Positive Genetic, Positive Genetic
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	genetic	6	3	5	Synthetic Rescue, Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic, Phenotypic Suppression
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	genetic	6	2	4	Negative Genetic, Negative Genetic, Negative Genetic, Synthetic Lethality, Negative Genetic, Negative Genetic
COG8	YML071C	Component of the conserved oligomeric Golgi complex	genetic	6	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
SET2	YJL168C	Histone methyltransferase with a role in transcriptional elongation	genetic	6	1	4	Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic
RUD3	YOR216C	Golgi matrix protein	genetic	6	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	genetic	5	2	5	Negative Genetic, Negative Genetic, Synthetic Growth Defect, Negative Genetic, Negative Genetic
SWD1	YAR003W	Subunit of the COMPASS (Set1C) complex	genetic	5	2	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Positive Genetic
UBP8	YMR223W	Ubiquitin-specific protease component of the SAGA acetylation complex	genetic	5	2	4	Positive Genetic, Positive Genetic, Synthetic Rescue, Positive Genetic, Positive Genetic
HSL1	YKL101W	Nim1p-related protein kinase	genetic	5	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
BCK1	YJL095W	MAPKKK acting in the protein kinase C signaling pathway	genetic	5	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
ELM1	YKL048C	Serine/threonine protein kinase	genetic	5	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
SWR1	YDR334W	Swi2/Snf2-related ATPase	genetic	5	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
SWI4	YER111C	DNA binding component of the SBF complex (Swi4p-Swi6p)	genetic	5	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
HCM1	YCR065W	Forkhead transcription factor	genetic	5	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
SEC72	YLR292C	Non-essential subunit of Sec63 complex	genetic	5	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
RIM11	YMR139W	Protein kinase	physical	5	4	3	Affinity Capture-Western, Two-hybrid, Biochemical Activity, Biochemical Activity, Affinity Capture-MS
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	5	3	3	Affinity Capture-Western, Affinity Capture-Western, Two-hybrid, Two-hybrid, Affinity Capture-MS
BRE5	YNR051C	Ubiquitin protease cofactor	genetic	5	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
GYP1	YOR070C	Cis-golgi GTPase-activating protein (GAP) for yeast Rabs	genetic	5	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
ENT4	YLL038C	Protein of unknown function	genetic	5	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
NDC80	YIL144W	Component of the kinetochore-associated Ndc80 complex	regulation	5	5	2	chromatin immunoprecipitation-qPCR evidence, DNA to cDNA expression microarray evidence, fluorescence in situ hybridization evidence, northern blot evidence, qualitative western immunoblotting evidence
HTZ1	YOL012C	Histone variant H2AZ	genetic	4	2	4	Negative Genetic, Synthetic Lethality, Negative Genetic, Negative Genetic
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	genetic	4	2	4	Positive Genetic, Positive Genetic, Positive Genetic, Phenotypic Suppression
GET2	YER083C	Subunit of the GET complex	genetic	4	2	4	Negative Genetic, Synthetic Growth Defect, Negative Genetic, Negative Genetic
DAL81	YIR023W	Positive regulator of genes in multiple nitrogen degradation pathways	genetic	4	1	4	Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic
VPS71	YML041C	Nucleosome-binding component of the SWR1 complex	genetic	4	1	4	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
RAD52	YML032C	Protein involved in homologous recombination	genetic	4	3	3	Positive Genetic, Synthetic Growth Defect, Phenotypic Suppression, Synthetic Growth Defect
SDC1	YDR469W	Subunit of the COMPASS (Set1C) complex	genetic	4	2	3	Negative Genetic, Negative Genetic, Negative Genetic, Positive Genetic
NUP133	YKR082W	Subunit of Nup84p subcomplex of nuclear pore complex (NPC)	genetic	4	2	3	Synthetic Lethality, Negative Genetic, Negative Genetic, Negative Genetic
JNM1	YMR294W	Component of the yeast dynactin complex	genetic	4	2	3	Synthetic Lethality, Negative Genetic, Negative Genetic, Negative Genetic
HOS2	YGL194C	Histone deacetylase and subunit of Set3 and Rpd3L complexes	genetic	4	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
SNT1	YCR033W	Set3C histone deacetylase scaffold	genetic	4	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
ESC1	YMR219W	Protein involved in telomeric silencing	genetic	4	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
SWC3	YAL011W	Protein of unknown function	genetic	4	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
NUP188	YML103C	Subunit of the inner ring of the nuclear pore complex (NPC)	genetic	4	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
YPT6	YLR262C	Rab family GTPase	genetic	4	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
VPS72	YDR485C	Htz1p-binding component of the SWR1 complex	genetic	4	1	3	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
EAF3	YPR023C	Component of the Rpd3S histone deacetylase complex	genetic	4	2	2	Positive Genetic, Positive Genetic, Negative Genetic, Positive Genetic
HDA3	YPR179C	Subunit of HDA1 histone deacetylase complex	genetic	4	1	2	Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic
ARP6	YLR085C	Actin-related protein that binds nucleosomes	genetic	4	1	2	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
KAR3	YPR141C	Minus-end-directed microtubule motor	genetic	4	1	2	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
SGF11	YPL047W	Integral subunit of SAGA histone acetyltransferase complex	genetic	4	1	2	Positive Genetic, Positive Genetic, Positive Genetic, Positive Genetic
UPS1	YLR193C	Phosphatidic acid transfer protein	genetic	4	1	2	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
RNH70	YGR276C	3'-5' exoribonuclease	genetic	4	1	2	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
SKS1	YPL026C	Putative serine/threonine protein kinase	genetic	4	1	2	Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
INO1	YJL153C	Inositol-3-phosphate synthase	regulation	3	3	3	beta-galactosidase reporter gene assay evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
FKH1	YIL131C	Forkhead family transcription factor	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
FOX2	YKR009C	3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
ACS1	YAL054C	Acetyl-coA synthetase isoform	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
YBR184W	YBR184W	Putative protein of unknown function	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
YOL131W	YOL131W	Putative protein of unknown function	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
SWI1	YPL016W	Subunit of the SWI/SNF chromatin remodeling complex	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
UBI4	YLL039C	Ubiquitin	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
ATG8	YBL078C	Ub-like protein	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, quantitative reverse transcription polymerase chain reaction evidence, quantitative reverse transcription polymerase chain reaction evidence
RIC1	YLR039C	Protein involved in retrograde transport to the cis-Golgi network	genetic	3	2	3	Synthetic Lethality, Negative Genetic, Negative Genetic
BRE1	YDL074C	E3 ubiquitin ligase	genetic	3	2	3	Negative Genetic, Synthetic Lethality, Negative Genetic
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	genetic	3	2	3	Negative Genetic, Positive Genetic, Negative Genetic
RAD51	YER095W	Strand exchange protein	genetic	3	2	3	Positive Genetic, Synthetic Growth Defect, Synthetic Growth Defect
SGS1	YMR190C	RecQ family nucleolar DNA helicase	genetic	3	2	3	Synthetic Growth Defect, Synthetic Growth Defect, Positive Genetic
LSM6	YDR378C	Lsm (Like Sm) protein	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
LHP1	YDL051W	RNA binding protein required for maturation of tRNA and U6 snRNA	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
SET3	YKR029C	Defining member of the SET3 histone deacetylase complex	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
RXT3	YDL076C	Component of the Rpd3L histone deacetylase complex	physical	3	1	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
MCK1	YNL307C	Dual-specificity ser/thr and tyrosine protein kinase	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
SPC24	YMR117C	Component of the kinetochore-associated Ndc80 complex	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
CLN3	YAL040C	G1 cyclin involved in cell cycle progression	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
SKY1	YMR216C	SR protein kinase (SRPK)	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
PSD1	YNL169C	Phosphatidylserine decarboxylase of the mitochondrial inner membrane	genetic	3	1	3	Negative Genetic, Negative Genetic, Negative Genetic
ERG3	YLR056W	C-5 sterol desaturase	genetic	3	3	2	Negative Genetic, Phenotypic Suppression, Positive Genetic
RCO1	YMR075W	Essential component of the Rpd3S histone deacetylase complex	genetic	3	2	2	Positive Genetic, Negative Genetic, Positive Genetic
BIM1	YER016W	Microtubule plus end-tracking protein	genetic	3	2	2	Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement
AFT1	YGL071W	Transcription factor involved in iron utilization and homeostasis	genetic	3	2	2	Negative Genetic, Positive Genetic, Negative Genetic
PAN1	YIR006C	Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p	genetic	3	2	2	Positive Genetic, Negative Genetic, Positive Genetic
CHD1	YER164W	Chromatin remodeler that regulates various aspects of transcription	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
CKB2	YOR039W	Beta' regulatory subunit of casein kinase 2 (CK2)	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SIF2	YBR103W	WD40 repeat-containing subunit of Set3C histone deacetylase complex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
NEW1	YPL226W	Translation termination and ribosome biogenesis factor	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
BRE2	YLR015W	Subunit of COMPASS (Set1C) complex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
GID8	YMR135C	Subunit of GID Complex, binds strongly to central component Vid30p	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
AHC1	YOR023C	Subunit of the Ada histone acetyltransferase complex	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
LOS1	YKL205W	Nuclear pore protein	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
BUD27	YFL023W	Unconventional prefoldin protein involved in translation initiation	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
CLG1	YGL215W	Cyclin-like protein that interacts with Pho85p	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
CCH1	YGR217W	Voltage-gated high-affinity calcium channel	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
HUB1	YNR032C-A	Ubiquitin-like protein modifier	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SEC28	YIL076W	Epsilon-COP subunit of the coatomer	genetic	3	1	2	Positive Genetic, Positive Genetic, Positive Genetic
IRC23	YOR044W	Protein of unknown function involved in multidrug resistance	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
SHE1	YBL031W	Mitotic spindle protein	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
STP2	YHR006W	Transcription factor	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
FLX1	YIL134W	Mitochondrial flavin adenine dinucleotide transporter	genetic	3	1	2	Positive Genetic, Positive Genetic, Positive Genetic
TNA1	YGR260W	High affinity nicotinic acid plasma membrane permease	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
RIT1	YMR283C	Initiator methionine 2'-O-ribosyl phosphate transferase	genetic	3	1	2	Negative Genetic, Negative Genetic, Negative Genetic
ADY2	YCR010C	Acetate transporter required for normal sporulation	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CAR1	YPL111W	Arginase, catabolizes arginine to ornithine and urea	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
ARG1	YOL058W	Arginosuccinate synthetase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CHA1	YCL064C	Catabolic L-serine (L-threonine) deaminase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PST1	YDR055W	Cell wall protein that contains a putative GPI-attachment site	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
SRT1	YMR101C	Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PCH2	YBR186W	Hexameric ring ATPase that remodels chromosome axis protein Hop1p	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
ICE2	YIL090W	Integral ER membrane protein with type-III transmembrane domains	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
TSL1	YML100W	Large subunit of trehalose 6-phosphate synthase/phosphatase complex	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
CAR2	YLR438W	L-ornithine transaminase (OTAse)	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
IRC15	YPL017C	Microtubule associated protein	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
FLX1	YIL134W	Mitochondrial flavin adenine dinucleotide transporter	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
OM14	YBR230C	Mitochondrial outer membrane receptor for cytosolic ribosomes	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PRX1	YBL064C	Mitochondrial peroxiredoxin with thioredoxin peroxidase activity	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
FDH1	YOR388C	NAD(+)-dependent formate dehydrogenase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
YAT1	YAR035W	Outer mitochondrial carnitine acetyltransferase	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
HSP12	YFL014W	Plasma membrane protein involved in maintaining membrane organization	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
TVS1	YCR061W	Protein of unknown function	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
YLR297W	YLR297W	Protein of unknown function	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
LDO45	YMR147W	Putative protein of unknown function	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RIM4	YHL024W	Putative RNA-binding protein	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
YOR192C-B	YOR192C-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
PUT3	YKL015W	Transcriptional activator	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
XBP1	YIL101C	Transcriptional repressor	regulation	2	2	2	chromatin immunoprecipitation-chip evidence, DNA to cDNA expression microarray evidence
RIM15	YFL033C	Protein kinase involved in cell proliferation in response to nutrients	regulation	2	2	2	protein kinase assay evidence, qualitative western immunoblotting evidence
ACT1	YFL039C	Actin, structural protein in cytoskeleton	genetic	2	2	2	Negative Genetic, Positive Genetic
CDC10	YCR002C	Component of the septin ring, required for cytokinesis	genetic	2	2	2	Negative Genetic, Positive Genetic
PRE9	YGR135W	Alpha 3 subunit of the 20S proteasome	genetic	2	2	2	Synthetic Rescue, Negative Genetic
OPI1	YHL020C	Transcriptional regulator of a variety of genes	genetic	2	2	2	Synthetic Rescue, Positive Genetic
ROM2	YLR371W	Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p	genetic	2	2	2	Synthetic Lethality, Negative Genetic
GET1	YGL020C	Subunit of the GET complex	genetic	2	2	2	Synthetic Growth Defect, Negative Genetic
RSC1	YGR056W	Component of the RSC chromatin remodeling complex	genetic	2	2	2	Negative Genetic, Positive Genetic
IES3	YLR052W	Subunit of the INO80 chromatin remodeling complex	genetic	2	2	2	Negative Genetic, Positive Genetic
EAF7	YNL136W	Subunit of the NuA4 histone acetyltransferase complex	genetic	2	2	2	Positive Genetic, Negative Genetic
CSF1	YLR087C	Protein with structural similarity to lipid transport protein Vps13p	genetic	2	2	2	Negative Genetic, Positive Genetic
DCC1	YCL016C	Subunit of a complex with Ctf8p and Ctf18p	genetic	2	2	2	Synthetic Lethality, Positive Genetic
YPC1	YBR183W	Alkaline ceramidase	genetic	2	2	2	Negative Genetic, Positive Genetic
BRL1	YHR036W	Essential nuclear envelope/ER integral membrane protein	genetic	2	2	2	Positive Genetic, Negative Genetic
SUM1	YDR310C	Transcriptional repressor that regulates middle-sporulation genes	genetic	2	2	2	Negative Genetic, Phenotypic Enhancement
ARO3	YDR035W	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
IRC8	YJL051W	Bud tip localized protein of unknown function	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
CAT2	YML042W	Carnitine acetyl-CoA transferase	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
SNF2	YOR290C	Catalytic subunit of the SWI/SNF chromatin remodeling complex	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YTA7	YGR270W	Chromatin-binding ATPase that regulates histone gene expression	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
RRN11	YML043C	Component of the core factor (CF) rDNA transcription factor complex	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
PXR1	YGR280C	Essential protein involved in rRNA and snoRNA maturation	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
PGA2	YNL149C	Essential protein required for maturation of Gas1p and Pho8p	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
NUS1	YDL193W	Forms dehydrodolichyl diphosphate synthase complex with RER2 or SRT1	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
UGA4	YDL210W	GABA (gamma-aminobutyrate) permease	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
RAS1	YOR101W	GTPase involved in G-protein signaling in adenylate cyclase activation	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
SPO16	YHR153C	Meiosis-specific protein involved in synaptonemal complex assembly	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
MSC6	YOR354C	Multicopy suppressor of HER2 involved in mitochondrial translation	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
BEM4	YPL161C	Protein involved in establishment of cell polarity and bud emergence	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
FRA1	YLL029W	Protein involved in negative regulation of iron regulon transcription	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YET2	YMR040W	Protein of unknown function that may interact with ribosomes	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
ACH1	YBL015W	Protein with CoA transferase activity	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YBR284W	YBR284W	Putative metallo-dependent hydrolase superfamily protein	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YGR067C	YGR067C	Putative protein of unknown function	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
YOR338W	YOR338W	Putative protein of unknown function	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
ECM29	YHL030W	Scaffold protein	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
SSH1	YBR283C	Subunit of the Ssh1 translocon complex	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
COM2	YER130C	Transcription factor that binds IME1 Upstream Activation Signal (UAS)	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
GOS1	YHL031C	v-SNARE protein involved in Golgi transport	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
CAT8	YMR280C	Zinc cluster transcriptional activator	regulation	2	1	2	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence
CKA1	YIL035C	Alpha catalytic subunit of casein kinase 2 (CK2)	genetic	2	1	2	Positive Genetic, Positive Genetic
ARL1	YBR164C	Soluble GTPase with a role in regulation of membrane traffic	genetic	2	1	2	Positive Genetic, Positive Genetic
ARC1	YGL105W	Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases	genetic	2	1	2	Negative Genetic, Negative Genetic
LSM1	YJL124C	Lsm (Like Sm) protein	genetic	2	1	2	Negative Genetic, Negative Genetic
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	genetic	2	1	2	Negative Genetic, Negative Genetic
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	genetic	2	1	2	Negative Genetic, Negative Genetic
RPC19	YNL113W	RNA polymerase subunit AC19	genetic	2	1	2	Negative Genetic, Negative Genetic
RPO31	YOR116C	RNA polymerase III largest subunit C160	genetic	2	1	2	Negative Genetic, Negative Genetic
ARP9	YMR033W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	genetic	2	1	2	Negative Genetic, Negative Genetic
RPN12	YFR052W	Subunit of the 19S regulatory particle of the 26S proteasome lid	genetic	2	1	2	Negative Genetic, Negative Genetic
GCD2	YGR083C	Delta subunit of the translation initiation factor eIF2B	genetic	2	1	2	Negative Genetic, Negative Genetic
KAP95	YLR347C	Karyopherin beta	genetic	2	1	2	Negative Genetic, Negative Genetic
ARO1	YDR127W	Pentafunctional arom protein	genetic	2	1	2	Negative Genetic, Negative Genetic
BAT1	YHR208W	Mitochondrial branched-chain amino acid (BCAA) aminotransferase	genetic	2	1	2	Negative Genetic, Negative Genetic
CKS1	YBR135W	Cyclin-dependent protein kinase regulatory subunit and adaptor	genetic	2	1	2	Negative Genetic, Negative Genetic
COG3	YER157W	Essential component of the conserved oligomeric Golgi complex	genetic	2	1	2	Negative Genetic, Negative Genetic
NHP10	YDL002C	Non-essential INO80 chromatin remodeling complex subunit	genetic	2	1	2	Negative Genetic, Negative Genetic
NUP60	YAR002W	FG-nucleoporin component of central core of the nuclear pore complex	genetic	2	1	2	Negative Genetic, Negative Genetic
IWR1	YDL115C	RNA polymerase II transport factor, conserved from yeast to humans	genetic	2	1	2	Negative Genetic, Negative Genetic
CTI6	YPL181W	Component of the Rpd3L histone deacetylase complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SDS3	YIL084C	Component of the Rpd3L histone deacetylase complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SDS3	YIL084C	Component of the Rpd3L histone deacetylase complex	genetic	2	1	2	Positive Genetic, Positive Genetic
RXT2	YBR095C	Component of the histone deacetylase Rpd3L complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
RXT2	YBR095C	Component of the histone deacetylase Rpd3L complex	genetic	2	1	2	Negative Genetic, Negative Genetic
GCN5	YGR252W	Catalytic subunit of ADA and SAGA histone acetyltransferase complexes	physical	2	1	2	Biochemical Activity, Biochemical Activity
TEF2	YBR118W	Translational elongation factor EF-1 alpha	genetic	2	1	2	Negative Genetic, Negative Genetic
SPP1	YPL138C	Subunit of COMPASS (Set1C)	genetic	2	1	2	Negative Genetic, Negative Genetic
CRZ1	YNL027W	Transcription factor, activates transcription of stress response genes	genetic	2	1	2	Negative Genetic, Negative Genetic
PHO85	YPL031C	Cyclin-dependent kinase	genetic	2	1	2	Synthetic Lethality, Synthetic Lethality
CNB1	YKL190W	Calcineurin B	genetic	2	1	2	Negative Genetic, Negative Genetic
SLX5	YDL013W	Subunit of the Slx5-Slx8 SUMO-targeted Ub ligase (STUbL) complex	genetic	2	1	2	Negative Genetic, Negative Genetic
KNS1	YLL019C	Protein kinase involved in negative regulation of PolIII transcription	genetic	2	1	2	Positive Genetic, Positive Genetic
SHP1	YBL058W	UBX domain-containing substrate adaptor for Cdc48p	genetic	2	1	2	Negative Genetic, Negative Genetic
UFD2	YDL190C	Ubiquitin (Ub) chain assembly factor (E4)	genetic	2	1	2	Negative Genetic, Negative Genetic
BUL1	YMR275C	Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex	genetic	2	1	2	Negative Genetic, Negative Genetic
BEM3	YPL115C	Rho GTPase activating protein (RhoGAP)	genetic	2	1	2	Negative Genetic, Negative Genetic
BEM4	YPL161C	Protein involved in establishment of cell polarity and bud emergence	genetic	2	1	2	Positive Genetic, Positive Genetic
HMG2	YLR450W	HMG-CoA reductase	genetic	2	1	2	Negative Genetic, Negative Genetic
SKT5	YBL061C	Activator of Chs3p (chitin synthase III) during vegetative growth	genetic	2	1	2	Synthetic Growth Defect, Synthetic Growth Defect
CDH1	YGL003C	Activator of anaphase-promoting complex/cyclosome (APC/C)	genetic	2	1	2	Negative Genetic, Negative Genetic
CHZ1	YER030W	Histone chaperone for Htz1p/H2A-H2B dimer	genetic	2	1	2	Positive Genetic, Positive Genetic
CTK3	YML112W	Gamma subunit of C-terminal domain kinase I	genetic	2	1	2	Negative Genetic, Negative Genetic
TRS85	YDR108W	Component of transport protein particle (TRAPP) complex III	genetic	2	1	2	Negative Genetic, Negative Genetic
MAD2	YJL030W	Component of the spindle-assembly checkpoint complex	genetic	2	1	2	Negative Genetic, Negative Genetic
RIM101	YHL027W	Cys2His2 zinc-finger transcriptional repressor	genetic	2	1	2	Positive Genetic, Positive Genetic
APC5	YOR249C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	2	1	2	Negative Genetic, Negative Genetic
COG6	YNL041C	Component of the conserved oligomeric Golgi complex	genetic	2	1	2	Negative Genetic, Negative Genetic
RNA15	YGL044C	Component of the cleavage and polyadenylation factor I (CF I)	genetic	2	1	2	Negative Genetic, Negative Genetic
SUS1	YBR111W-A	Global transcriptional regulator, component of SAGA, TREX-2 complexes	genetic	2	1	2	Negative Genetic, Negative Genetic
SWC5	YBR231C	Component of the SWR1 complex	genetic	2	1	2	Negative Genetic, Negative Genetic
STB1	YNL309W	Protein with role in regulation of MBF-specific transcription at Start	genetic	2	1	2	Negative Genetic, Negative Genetic
CTF8	YHR191C	Subunit of a complex with Ctf18p	genetic	2	1	2	Positive Genetic, Positive Genetic
MAD1	YGL086W	Coiled-coil protein involved in spindle-assembly checkpoint	genetic	2	1	2	Negative Genetic, Negative Genetic
UFE1	YOR075W	t-SNARE protein required for retrograde vesicular traffic	genetic	2	1	2	Negative Genetic, Negative Genetic
GLN3	YER040W	Transcriptional activator in nitrogen catabolite repression system	genetic	2	1	2	Negative Genetic, Negative Genetic
STU2	YLR045C	Microtubule polymerase of the XMAP215/Dis1 family	genetic	2	1	2	Negative Genetic, Negative Genetic
SUR1	YPL057C	Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit	genetic	2	1	2	Negative Genetic, Negative Genetic
ORM2	YLR350W	Protein that mediates sphingolipid homeostasis	genetic	2	1	2	Negative Genetic, Negative Genetic
OKP1	YGR179C	Outer kinetochore protein required for accurate chromosome segregation	genetic	2	1	2	Negative Genetic, Negative Genetic
SPC105	YGL093W	Subunit of a kinetochore-microtubule binding complex	genetic	2	1	2	Negative Genetic, Negative Genetic
VPS8	YAL002W	Membrane-binding component of the CORVET complex	genetic	2	1	2	Negative Genetic, Negative Genetic
VID22	YLR373C	G-quadruplex (G4) DNA binding protein	genetic	2	1	2	Negative Genetic, Negative Genetic
VID24	YBR105C	GID Complex regulatory subunit	genetic	2	1	2	Negative Genetic, Negative Genetic
YIH1	YCR059C	Negative regulator of eIF2 kinase Gcn2p	genetic	2	1	2	Negative Genetic, Negative Genetic
YDJ1	YNL064C	Type I HSP40 co-chaperone	genetic	2	1	2	Negative Genetic, Negative Genetic
USE1	YGL098W	Essential SNARE protein localized to the ER	genetic	2	1	2	Negative Genetic, Negative Genetic
URE2	YNL229C	Nitrogen catabolite repression transcriptional regulator	genetic	2	1	2	Negative Genetic, Negative Genetic
VPS27	YNR006W	Endosomal protein that forms a complex with Hse1p	genetic	2	1	2	Negative Genetic, Negative Genetic
VPS60	YDR486C	Protein involved in late endosome to vacuole transport	genetic	2	1	2	Negative Genetic, Negative Genetic
VPS38	YLR360W	Part of a Vps34p phosphatidylinositol 3-kinase complex	genetic	2	1	2	Negative Genetic, Negative Genetic
SLX8	YER116C	Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex	genetic	2	1	2	Negative Genetic, Negative Genetic
LCB5	YLR260W	Minor sphingoid long-chain base kinase	genetic	2	1	2	Negative Genetic, Negative Genetic
SAC1	YKL212W	Phosphatidylinositol phosphate phosphatase	genetic	2	1	2	Negative Genetic, Negative Genetic
SMT1	YJL147C	Translational repressor of the mitochondrial ATP6/8 mRNA	genetic	2	1	2	Negative Genetic, Negative Genetic
CHS6	YJL099W	Member of the ChAPs (Chs5p-Arf1p-binding proteins) family	genetic	2	1	2	Synthetic Growth Defect, Synthetic Growth Defect
EUG1	YDR518W	Protein disulfide isomerase of the endoplasmic reticulum lumen	genetic	2	1	2	Negative Genetic, Negative Genetic
SCS7	YMR272C	Sphingolipid alpha-hydroxylase	genetic	2	1	2	Negative Genetic, Negative Genetic
SLM4	YBR077C	Subunit of the EGO/GSE complex	genetic	2	1	2	Negative Genetic, Negative Genetic
LAS21	YJL062W	Mannose-ethanolamine phosphotransferase	genetic	2	1	2	Negative Genetic, Negative Genetic
ISW2	YOR304W	ATP-dependent DNA translocase involved in chromatin remodeling	physical	2	2	1	Affinity Capture-Western, Reconstituted Complex
MED6	YHR058C	Subunit of the RNA polymerase II mediator complex	genetic	2	2	1	Positive Genetic, Negative Genetic
CMD1	YBR109C	Calmodulin	genetic	2	2	1	Positive Genetic, Negative Genetic
BCY1	YIL033C	Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA)	genetic	2	2	1	Negative Genetic, Positive Genetic
HYP2	YEL034W	Translation elongation factor eIF-5A	genetic	2	2	1	Positive Genetic, Negative Genetic
CNA1	YLR433C	Calcineurin A	physical	2	2	1	Reconstituted Complex, Biochemical Activity
RAD59	YDL059C	Protein involved DNA double-strand break repair	genetic	2	2	1	Phenotypic Suppression, Dosage Rescue
MRPL17	YNL252C	Mitochondrial ribosomal protein of the large subunit	genetic	2	2	1	Positive Genetic, Negative Genetic
PML39	YML107C	Protein required for nuclear retention of unspliced pre-mRNAs	genetic	2	2	1	Positive Genetic, Negative Genetic
PAA1	YDR071C	Polyamine acetyltransferase	genetic	2	1	1	Negative Genetic, Negative Genetic
PTC4	YBR125C	Cytoplasmic type 2C protein phosphatase (PP2C)	genetic	2	1	1	Negative Genetic, Negative Genetic
DEP1	YAL013W	Component of the Rpd3L histone deacetylase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
BRR1	YPR057W	snRNP protein component of spliceosomal snRNPs	genetic	2	1	1	Negative Genetic, Negative Genetic
ACS2	YLR153C	Acetyl-coA synthetase isoform	genetic	2	1	1	Synthetic Rescue, Synthetic Rescue
HHT1	YBR010W	Histone H3	genetic	2	1	1	Synthetic Growth Defect, Synthetic Growth Defect
ECM33	YBR078W	GPI-anchored protein involved in efficient glucose uptake	genetic	2	1	1	Positive Genetic, Positive Genetic
AIM3	YBR108W	Protein that inhibits barbed-end actin filament elongation	genetic	2	1	1	Positive Genetic, Positive Genetic
ESC2	YDR363W	Sumo-like domain protein	genetic	2	1	1	Negative Genetic, Negative Genetic
NIP100	YPL174C	Large subunit of the dynactin complex	genetic	2	1	1	Negative Genetic, Negative Genetic
ASH1	YKL185W	Component of the Rpd3L histone deacetylase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GGA1	YDR358W	Golgi-localized protein with homology to gamma-adaptin	genetic	2	1	1	Negative Genetic, Negative Genetic
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SRS2	YJL092W	DNA helicase and DNA-dependent ATPase	genetic	2	1	1	Dosage Lethality, Dosage Lethality
YBR238C	YBR238C	Mitochondrial membrane protein	genetic	2	1	1	Negative Genetic, Negative Genetic
SCC4	YER147C	Subunit of cohesin loading factor (Scc2p-Scc4p)	genetic	2	1	1	Synthetic Rescue, Synthetic Rescue
IAI11	YBL059W	Putative mitochondrial protein of unknown function	genetic	2	1	1	Negative Genetic, Negative Genetic
PEX32	YBR168W	Peroxisomal integral membrane protein	genetic	2	1	1	Negative Genetic, Negative Genetic
ALT1	YLR089C	Alanine transaminase (glutamic pyruvic transaminase)	genetic	2	1	1	Negative Genetic, Negative Genetic
LCL1	YPL056C	Putative protein of unknown function	genetic	2	1	1	Negative Genetic, Negative Genetic
KIP3	YGL216W	Kinesin-related antiparallel sliding motor protein	genetic	2	1	1	Negative Genetic, Negative Genetic
ERD1	YDR414C	Predicted membrane protein required for lumenal ER protein retention	genetic	2	1	1	Negative Genetic, Negative Genetic
GCN5	YGR252W	Catalytic subunit of ADA and SAGA histone acetyltransferase complexes	regulation	1	1	1	qualitative western immunoblotting evidence
FKH2	YNL068C	Forkhead family transcription factor	regulation	1	1	1	ChEC-Seq experiments
MED2	YDL005C	Subunit of the RNA polymerase II mediator complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YAP1	YML007W	Basic leucine zipper (bZIP) transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MED4	YOR174W	Subunit of the RNA polymerase II mediator complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FHL1	YPR104C	Regulator of ribosomal protein (RP) transcription	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SER33	YIL074C	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
HEM1	YDR232W	5-aminolevulinate synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARG56	YER069W	Acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATH1	YPR026W	Acid trehalase required for utilization of extracellular trehalose	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ACT1	YFL039C	Actin, structural protein in cytoskeleton	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARE2	YNR019W	Acyl-CoA:sterol acyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
HNT1	YDL125C	Adenosine 5'-monophosphoramidase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADO1	YJR105W	Adenosine kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADK1	YDR226W	Adenylate kinase, required for purine metabolism	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATF2	YGR177C	Alcohol acetyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADH5	YBR145W	Alcohol dehydrogenase isoenzyme V	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPC1	YBR183W	Alkaline ceramidase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MNN1	YER001W	Alpha-1,3-mannosyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LEU9	YOR108W	Alpha-isopropylmalate synthase II (2-isopropylmalate synthase)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CAP1	YKL007W	Alpha subunit of the capping protein heterodimer (Cap1p and Cap2p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BAP3	YDR046C	Amino acid permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RVS161	YCR009C	Amphiphysin-like lipid raft protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
TMC1	YOR052C	AN1-type zinc finger protein, effector of proteotoxic stress response	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ALP1	YNL270C	Arginine transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARO9	YHR137W	Aromatic aminotransferase II	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HOM2	YDR158W	Aspartic beta semi-aldehyde dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATP10	YLR393W	Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
KAR2	YJL034W	ATPase involved in protein import into the ER	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARB1	YER036C	ATPase of the ATP-binding cassette (ABC) family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDR10	YOR328W	ATP-binding cassette (ABC) transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MET3	YJR010W	ATP sulfurylase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GVP36	YIL041W	BAR domain protein that localizes to early and late Golgi vesicles	regulation	1	1	1	DNA to cDNA expression microarray evidence
YAP5	YIR018W	Basic leucine zipper (bZIP) iron-sensing transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CTK2	YJL006C	Beta subunit of C-terminal domain kinase I (CTDK-I)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LSC2	YGR244C	Beta subunit of succinyl-CoA ligase	regulation	1	1	1	DNA to cDNA expression microarray evidence
URA2	YJL130C	Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AYR1	YIL124W	Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
RTT107	YHR154W	BRCA1 C-terminal domain protein needed for recovery from DNA damage	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GNP1	YDR508C	Broad specificity amino acid permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CLB3	YDL155W	B-type cyclin involved in cell cycle progression	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CLB5	YPR120C	B-type cyclin involved in DNA replication during S phase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MET28	YIR017C	bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ERG5	YMR015C	C-22 sterol desaturase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SIP4	YJL089W	C6 zinc cluster transcriptional activator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TRM11	YOL124C	Catalytic subunit of adoMet-dependent tRNA methyltransferase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CLA4	YNL298W	Cdc42p-activated signal transducing kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SVS1	YPL163C	Cell wall and vacuolar protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIR3	YIL011W	Cell wall mannoprotein	regulation	1	1	1	DNA to cDNA expression microarray evidence
CWP1	YKL096W	Cell wall mannoprotein that localizes to birth scars of daughter cells	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PEX14	YGL153W	Central component of the peroxisomal importomer complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
XDJ1	YLR090W	Chaperone with a role in facilitating mitochondrial protein import	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CIT2	YCR005C	Citrate synthase, peroxisomal isozyme involved in glyoxylate cycle	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CHC1	YGL206C	Clathrin heavy chain	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COF1	YLL050C	Cofilin, involved in pH-dependent actin filament depolarization	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RRP36	YOR287C	Component of 90S preribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RMD5	YDR255C	Component of GID Complex that confers ubiquitin ligase (U3) activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DUG3	YNL191W	Component of glutamine amidotransferase (GATase II)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
EIS1	YMR031C	Component of the eisosome required for proper eisosome assembly	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VAN1	YML115C	Component of the mannan polymerase I	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MPC54	YOR177C	Component of the meiotic outer plaque	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
EAF1	YDR359C	Component of the NuA4 histone acetyltransferase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LDB7	YBL006C	Component of the RSC chromatin remodeling complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SFB3	YHR098C	Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC3	YLR314C	Component of the septin ring that is required for cytokinesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MPP10	YJR002W	Component of the SSU processome and 90S preribosome	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OYE3	YPL171C	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GPP1	YIL053W	Constitutively expressed DL-glycerol-3-phosphate phosphatase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR302W	YOR302W	CPA1 uORF	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DDI3	YFL061W	Cyanamide hydratase that detoxifies cyanamide	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CIP1	YPL014W	Cyclin-dependent kinase inhibitor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IRC7	YFR055W	Cysteine desulphydrase, enables growth on cysteine as nitrogen source	regulation	1	1	1	DNA to cDNA expression microarray evidence
CBR1	YIL043C	Cytochrome b reductase and NADH-dependent reductase for Dph3p	regulation	1	1	1	DNA to cDNA expression microarray evidence
CYC1	YJR048W	Cytochrome c, isoform 1	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ALD2	YMR170C	Cytoplasmic aldehyde dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MDH2	YOL126C	Cytoplasmic malate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
HST2	YPL015C	Cytoplasmic NAD(+)-dependent protein deacetylase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CPR1	YDR155C	Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HUA1	YGR268C	Cytoplasmic protein containing a zinc finger domain	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR138C	YBR138C	Cytoplasmic protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IGD1	YFR017C	Cytoplasmic protein that inhibits Gdb1p glycogen debranching activity	regulation	1	1	1	DNA to cDNA expression microarray evidence
SRO9	YCL037C	Cytoplasmic RNA-binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UBR2	YLR024C	Cytoplasmic ubiquitin-protein ligase (E3)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CTT1	YGR088W	Cytosolic catalase T	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC60	YPL160W	Cytosolic leucyl tRNA synthetase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MOD5	YOR274W	Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BIO4	YNR057C	Dethiobiotin synthetase	regulation	1	1	1	DNA to cDNA expression microarray evidence
DPP1	YDR284C	Diacylglycerol pyrophosphate (DGPP) phosphatase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YSR3	YKR053C	Dihydrosphingosine 1-phosphate phosphatase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SMM1	YNR015W	Dihydrouridine synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOL057W	YOL057W	Dipeptidyl-peptidase III	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SWI4	YER111C	DNA binding component of the SBF complex (Swi4p-Swi6p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SRS2	YJL092W	DNA helicase and DNA-dependent ATPase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DPB11	YJL090C	DNA replication initiation protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PPN1	YDR452W	Dual endo- and exopolyphosphatase with a role in phosphate metabolism	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR466C-B	YLR466C-B	Dubious open reading frame	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR046W-A	YMR046W-A	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR306C-A	YMR306C-A	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLL047W	YLL047W	Dubious open reading frame	regulation	1	1	1	DNA to cDNA expression microarray evidence
UBC13	YDR092W	E2 ubiquitin-conjugating enzyme	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIF34	YMR146C	eIF3i subunit of the eukaryotic translation initiation factor 3 (eIF3)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PIL1	YGR086C	Eisosome core component	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COS1	YNL336W	Endosomal protein involved in turnover of plasma membrane proteins	regulation	1	1	1	DNA to cDNA expression microarray evidence
COS2	YBR302C	Endosomal protein involved in turnover of plasma membrane proteins	regulation	1	1	1	DNA to cDNA expression microarray evidence
COS4	YFL062W	Endosomal protein involved in turnover of plasma membrane proteins	regulation	1	1	1	DNA to cDNA expression microarray evidence
COS6	YGR295C	Endosomal protein involved in turnover of plasma membrane proteins	regulation	1	1	1	DNA to cDNA expression microarray evidence
COS8	YHL048W	Endosomal protein involved in turnover of plasma membrane proteins	regulation	1	1	1	DNA to cDNA expression microarray evidence
COS3	YML132W	Endosomal protein involved in turnover of plasma membrane proteins	regulation	1	1	1	DNA to cDNA expression microarray evidence
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SEC28	YIL076W	Epsilon-COP subunit of the coatomer	regulation	1	1	1	DNA to cDNA expression microarray evidence
DJP1	YIR004W	ER-associated chaperone involved in protein targeting	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPR063C	YPR063C	ER-localized protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GPI13	YLL031C	ER membrane localized phosphoryltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MGA2	YIR033W	ER membrane protein involved in regulation of OLE1 transcription	regulation	1	1	1	DNA to cDNA expression microarray evidence
GPI12	YMR281W	ER membrane protein involved in the second step of GPI anchor assembly	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
EPS1	YIL005W	ER protein with chaperone and co-chaperone activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ECM16	YMR128W	Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RLI1	YDR091C	Essential Fe-S protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PNO1	YOR145C	Essential nucleolar protein required for pre-18S rRNA processing	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LUC7	YDL087C	Essential protein associated with the U1 snRNP complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SWD3	YBR175W	Essential subunit of the COMPASS (Set1C) complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ASK1	YKL052C	Essential subunit of the Dam1 complex (aka DASH complex)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DIS3	YOL021C	Exosome core complex catalytic subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
POX1	YGL205W	Fatty-acyl coenzyme A oxidase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HOF1	YMR032W	F-BAR protein that regulates actin cytoskeleton organization	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FRE1	YLR214W	Ferric reductase and cupric reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
FET3	YMR058W	Ferro-O2-oxidoreductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SDH1	YKL148C	Flavoprotein subunit of succinate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BNI1	YNL271C	Formin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GAL2	YLR081W	Galactose permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
APL4	YPR029C	Gamma-adaptin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DST1	YGL043W	General transcription elongation factor TFIIS	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MEC1	YBR136W	Genome integrity checkpoint protein and PI kinase superfamily member	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GLK1	YCL040W	Glucokinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GNA1	YFL017C	Glucosamine-6-phosphate acetyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ROT2	YBR229C	Glucosidase II catalytic subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HYR1	YIR037W	Glutathione peroxidase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SCT1	YBL011W	Glycerol 3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GSY1	YFR015C	Glycogen synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MRK1	YDL079C	Glycogen synthase kinase 3 (GSK-3) homolog	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PRY3	YJL078C	GPI-anchored cell wall protein involved in export of sterols	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GYP6	YJL044C	GTPase-activating protein (GAP) for yeast Rab family member Ypt6p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RIB1	YBL033C	GTP cyclohydrolase II	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HPF1	YOL155C	Haze-protective mannoprotein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YRF1-6	YNL339C	Helicase encoded by the Y' element of subtelomeric regions	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YRF1-7	YPL283C	Helicase encoded by the Y' element of subtelomeric regions	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HXT11	YOL156W	Hexose transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
HXT2	YMR011W	High-affinity glucose transporter of the major facilitator superfamily	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BAP2	YBR068C	High-affinity leucine permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MUP1	YGR055W	High affinity methionine permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SAM3	YPL274W	High-affinity S-adenosylmethionine permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FUI1	YBL042C	High affinity uridine permease, localizes to the plasma membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MPC3	YGR243W	Highly conserved subunit of the mitochondrial pyruvate carrier (MPC)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HIS5	YIL116W	Histidinol-phosphate aminotransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
HTB2	YBL002W	Histone H2B	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HHT2	YNL031C	Histone H3	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HHF2	YNL030W	Histone H4	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HTZ1	YOL012C	Histone variant H2AZ	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHP1	YDR451C	Homeobox transcriptional repressor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TOS8	YGL096W	Homeodomain-containing protein and putative transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LYS21	YDL131W	Homocitrate synthase isozyme	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LYS12	YIL094C	Homo-isocitrate dehydrogenase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SSZ1	YHR064C	Hsp70 protein that interacts with Zuo1p (a DnaJ homolog)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP82	YPL240C	Hsp90 chaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IMD2	YHR216W	Inosine monophosphate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IPT1	YDR072C	Inositolphosphotransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PTR2	YKR093W	Integral membrane peptide transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YNL194C	YNL194C	Integral membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SGA1	YIL099W	Intracellular sporulation-specific glucoamylase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IDI1	YPL117C	Isopentenyl diphosphate:dimethylallyl diphosphate isomerase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
KIP1	YBL063W	Kinesin-related motor protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CPA2	YJR109C	Large subunit of carbamoyl phosphate synthetase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FAA1	YOR317W	Long chain fatty acyl-CoA synthetase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AMF1	YOR378W	Low affinity NH4+ transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LSM4	YER112W	Lsm (Like Sm) protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIP1	YBR067C	Major cell wall mannoprotein with possible lipase activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RNR1	YER070W	Major isoform of large subunit of ribonucleotide-diphosphate reductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IMA1	YGR287C	Major isomaltase (alpha-1,6-glucosidase/alpha-methylglucosidase)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MET13	YGL125W	Major isozyme of methylenetetrahydrofolate reductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SED1	YDR077W	Major stress-induced structural GPI-cell wall glycoprotein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DON1	YDR273W	Meiosis-specific component of the spindle pole body	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HFM1	YGL251C	Meiosis specific DNA helicase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPO1	YNL012W	Meiosis-specific prospore protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
SPO22	YIL073C	Meiosis-specific protein essential for chromosome synapsis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MEI4	YER044C-A	Meiosis-specific protein involved in forming DSBs	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SAE3	YHR079C-A	Meiosis-specific protein involved in meiotic recombination	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HOP1	YIL072W	Meiosis-specific protein required for chromosome synapsis	regulation	1	1	1	DNA to cDNA expression microarray evidence
SPO11	YHL022C	Meiosis-specific protein required for meiotic recombination	regulation	1	1	1	DNA to cDNA expression microarray evidence
HOP2	YGL033W	Meiosis-specific protein that localizes to chromosomes	regulation	1	1	1	DNA to cDNA expression microarray evidence
DMC1	YER179W	Meiosis-specific recombinase required for double-strand break repair	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MEK1	YOR351C	Meiosis-specific serine/threonine protein kinase	regulation	1	1	1	DNA to cDNA expression microarray evidence
NDT80	YHR124W	Meiosis-specific transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPO13	YHR014W	Meiotic regulator	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR460C	YLR460C	Member of the quinone oxidoreductase family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IZH4	YOL101C	Membrane protein involved in zinc ion homeostasis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RSN1	YMR266W	Membrane protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MES1	YGR264C	Methionyl-tRNA synthetase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP31	YDR533C	Methylglyoxalase that converts methylglyoxal to D-lactate	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BMT5	YIL096C	Methyltransferase required for m3U2634 methylation of the 25S rRNA	regulation	1	1	1	DNA to cDNA expression microarray evidence
URA8	YJR103W	Minor CTP synthase isozyme (see also URA7)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TPM2	YIL138C	Minor isoform of tropomyosin	regulation	1	1	1	DNA to cDNA expression microarray evidence
SDH9	YJL045W	Minor succinate dehydrogenase isozyme	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ADH3	YMR083W	Mitochondrial alcohol dehydrogenase isozyme III	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ALD4	YOR374W	Mitochondrial aldehyde dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MEF2	YJL102W	Mitochondrial elongation factor involved in translational elongation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NDE1	YMR145C	Mitochondrial external NADH dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GUT2	YIL155C	Mitochondrial glycerol-3-phosphate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AAC1	YMR056C	Mitochondrial inner membrane ADP/ATP translocator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CRC1	YOR100C	Mitochondrial inner membrane carnitine transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COX20	YDR231C	Mitochondrial inner membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MDM32	YOR147W	Mitochondrial inner membrane protein with similarity to Mdm31p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MDH1	YKL085W	Mitochondrial malate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP10	YOR020C	Mitochondrial matrix co-chaperonin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VPS73	YGL104C	Mitochondrial protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
MIN10	YFR032C-B	Mitochondrial protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIL060W	YIL060W	Mitochondrial protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
COQ21	YBR230W-A	Mitochondrial protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MRPL15	YLR312W-A	Mitochondrial ribosomal protein of the large subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RSM7	YJR113C	Mitochondrial ribosomal protein of the small subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SFC1	YJR095W	Mitochondrial succinate-fumarate transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MSS116	YDR194C	Mitochondrial transcription elongation factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LHS1	YKL073W	Molecular chaperone of the endoplasmic reticulum lumen	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
JEN1	YKL217W	Monocarboxylate/proton symporter of the plasma membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
APM1	YPL259C	Mu1-like medium subunit of the AP-1 complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GDH2	YDL215C	NAD(+)-dependent glutamate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ZTA1	YBR046C	NADPH-dependent quinone reductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NAT4	YMR069W	N alpha-acetyl-transferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIH1	YCR059C	Negative regulator of eIF2 kinase Gcn2p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NIT3	YLR351C	Nit protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MDM20	YOL076W	Non-catalytic subunit of the NatB N-terminal acetyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VHR2	YER064C	Non-essential nuclear protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IMD1	YAR073W	Nonfunctional protein with homology to IMP dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VTC5	YDR089W	Novel subunit of the vacuolar transporter chaperone complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
APQ12	YIL040W	Nuclear envelope/ER integral membrane protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
CSR2	YPR030W	Nuclear ubiquitin protein ligase binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YAR1	YPL239W	Nucleocytoplasmic shuttling assembly chaperone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BRX1	YOL077C	Nucleolar protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UTP25	YIL091C	Nucleolar protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RAD16	YBR114W	Nucleotide excision repair (NER) protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PIR3	YKL163W	O-glycosylated covalently-bound cell wall protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GTO3	YMR251W	Omega class glutathione transferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SNF7	YLR025W	One of four subunits of the ESCRT-III complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PTH1	YHR189W	One of two mitochondrially-localized peptidyl-tRNA hydrolases	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARG3	YJL088W	Ornithine carbamoyltransferase	regulation	1	1	1	DNA to cDNA expression microarray evidence
CTF19	YPL018W	Outer kinetochore protein, needed for accurate chromosome segregation	regulation	1	1	1	DNA to cDNA expression microarray evidence
ARH1	YDR376W	Oxidoreductase of the mitochondrial inner membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PAN6	YIL145C	Pantothenate synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ULP2	YIL031W	Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins	regulation	1	1	1	DNA to cDNA expression microarray evidence
STR3	YGL184C	Peroxisomal cystathionine beta-lyase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PRM4	YPL156C	Pheromone-regulated protein proposed to be involved in mating	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
APP1	YNL094W	Phosphatidate phosphatase, converts phosphatidate to diacylglycerol	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PGM2	YMR105C	Phosphoglucomutase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
VAC17	YCL063W	Phosphoprotein involved in vacuole inheritance	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDR5	YOR153W	Plasma membrane ATP-binding cassette (ABC) transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR1	YGR281W	Plasma membrane ATP-binding cassette (ABC) transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SNF3	YDL194W	Plasma membrane low glucose sensor, regulates glucose transport	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PUG1	YER185W	Plasma membrane protein involved in protoprophyrin and heme transport	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SYG1	YIL047C	Plasma membrane protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATO3	YDR384C	Plasma membrane protein, putative ammonium transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PUN1	YLR414C	Plasma membrane protein with a role in cell wall integrity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AUS1	YOR011W	Plasma membrane sterol transporter of the ATP-binding cassette family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SSU1	YPL092W	Plasma membrane sulfite pump involved in sulfite metabolism	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
QDR2	YIL121W	Plasma membrane transporter of the major facilitator superfamily	regulation	1	1	1	DNA to cDNA expression microarray evidence
PCI8	YIL071C	Possible shared subunit of Cop9 signalosome (CSN) and eIF3	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR210W	YDR210W	Predicted tail-anchored plasma membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
DHR2	YKL078W	Predominantly nucleolar DEAH-box ATP-dependent RNA helicase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR018C	YDR018C	Probable membrane protein with three predicted transmembrane domains	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS16A	YMR143W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS26B	YER131W	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS27B	YHR021C	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS4B	YHR203C	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPS7B	YNL096C	Protein component of the small (40S) ribosomal subunit	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RED1	YLR263W	Protein component of the synaptonemal complex axial elements	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ENT5	YDR153C	Protein containing an N-terminal epsin-like domain	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GAT2	YMR136W	Protein containing GATA family zinc finger motifs	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BXI1	YNL305C	Protein involved in apoptosis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
STD1	YOR047C	Protein involved in control of glucose-regulated gene expression	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COA6	YMR244C-A	Protein involved in cytochrome c oxidase (Complex IV) assembly	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MUD2	YKL074C	Protein involved in early pre-mRNA splicing	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
REC114	YMR133W	Protein involved in early stages of meiotic recombination	regulation	1	1	1	DNA to cDNA expression microarray evidence
REC104	YHR157W	Protein involved in early stages of meiotic recombination	regulation	1	1	1	DNA to cDNA expression microarray evidence
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GDS1	YOR355W	Protein involved in histone H4 acetylation at ribosomal protein genes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MDY2	YOL111C	Protein involved in inserting tail-anchored proteins into ER membranes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPL199C	YPL199C	Protein involved in nonstop mRNA decay	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LOH1	YJL038C	Protein involved in outer spore wall assembly	regulation	1	1	1	DNA to cDNA expression microarray evidence
STF1	YDL130W-A	Protein involved in regulation of the mitochondrial F1F0-ATP synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
STF2	YGR008C	Protein involved in resistance to desiccation stress	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FKS3	YMR306W	Protein involved in spore wall assembly	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TOS3	YGL179C	Protein kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
KNS1	YLL019C	Protein kinase involved in negative regulation of PolIII transcription	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TDA1	YMR291W	Protein kinase of unknown cellular role	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IKS1	YJL057C	Protein kinase of unknown cellular role	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SIM1	YIL123W	Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SNO1	YMR095C	Protein of unconfirmed function	regulation	1	1	1	DNA to cDNA expression microarray evidence
GIS3	YLR094C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBL029C-A	YBL029C-A	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NCW1	YMR122W-A	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDL129W	YDL129W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR222W	YDR222W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPL068C	YPL068C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CUE4	YML101C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PNS1	YOR161C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GFD2	YCL036W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FHN1	YGR131W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR019W	YOR019W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
INA1	YLR413W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AIM26	YKL037W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HOR7	YMR251W-A	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SDD1	YEL057C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR266W	YGR266W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATG41	YPL250C	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ICY1	YMR195W	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPR159C-A	YPR159C-A	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR032W-A	YOR032W-A	Protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CIS1	YLR346C	Protein of unknown function found in mitochondria	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIL089W	YIL089W	Protein of unknown function found in the ER and vacuole lumen	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BSC2	YDR275W	Protein of unknown function involved in multidrug resistance	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GTT3	YEL017W	Protein of unknown function may be involved in glutathione metabolism	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TMA64	YDR117C	Protein of unknown function that associates with ribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TMA7	YLR262C-A	Protein of unknown function that associates with ribosomes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LDO16	YMR148W	Protein of unknown function with possible role in spore wall assembly	regulation	1	1	1	DNA to cDNA expression microarray evidence
LUG1	YLR352W	Protein of unknown function with similarity to F-box proteins	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HXT8	YJL214W	Protein of unknown function with similarity to hexose transporters	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CSM4	YPL200W	Protein required for accurate chromosome segregation during meiosis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPG4	YMR107W	Protein required for high temperature survival during stationary phase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RMR1	YGL250W	Protein required for meiotic recombination and gene conversion	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YSW1	YBR148W	Protein required for normal prospore membrane formation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AFR1	YDR085C	Protein required for pheromone-induced projection (shmoo) formation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ARC1	YGL105W	Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
COX23	YHR116W	Protein that functions in mitochondrial copper homeostasis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
INH1	YDL181W	Protein that inhibits ATP hydrolysis by the F1F0-ATP synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIG1	YPL201C	Protein that interacts with glycerol 3-phosphatase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UIP4	YPL186C	Protein that interacts with Ulp1p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NDJ1	YOL104C	Protein that regulates meiotic SPB cohesion and telomere clustering	regulation	1	1	1	DNA to cDNA expression microarray evidence
DIF1	YLR437C	Protein that regulates nuclear import of Rnr2p and Rnr4p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SFK1	YKL051W	Protein that regulates phospholipid asymmetry at plasma membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TSC3	YBR058C-A	Protein that stimulates the activity of serine palmitoyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YER152C	YER152C	Protein with 2-aminoadipate transaminase activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LSO1	YJR005C-A	Protein with a potential role in response to iron deprivation	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CUZ1	YNL155W	Protein with a role in the ubiquitin-proteasome pathway	regulation	1	1	1	DNA to cDNA expression microarray evidence
COQ4	YDR204W	Protein with a role in ubiquinone (Coenzyme Q) biosynthesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PPE1	YHR075C	Protein with carboxyl methyl esterase activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UTR4	YEL038W	Protein with sequence similarity to acireductone synthases	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPL2	YHR136C	Protein with similarity to cyclin-dependent kinase inhibitors	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RAD23	YEL037C	Protein with ubiquitin-like N terminus	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PMP2	YEL017C-A	Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
OPT1	YJL212C	Proton-coupled oligopeptide transporter of the plasma membrane	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FCY2	YER056C	Purine-cytosine permease	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SMN1	YHR202W	Putative AMP hydrolase	regulation	1	1	1	DNA to cDNA expression microarray evidence
ATR2	YMR279C	Putative boron transporter involved in boron efflux and resistance	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FLC2	YAL053W	Putative calcium channel involved in calcium release under hypotonic	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RTS3	YGR161C	Putative component of the protein phosphatase type 2A complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NRE1	YIR035C	Putative cytoplasmic short-chain dehydrogenase/reductase	regulation	1	1	1	DNA to cDNA expression microarray evidence
SMF3	YLR034C	Putative divalent metal ion transporter involved in iron homeostasis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FRE5	YOR384W	Putative ferric reductase with similarity to Fre2p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIL108W	YIL108W	Putative metalloendopeptidase	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMC2	YBR104W	Putative mitochondrial inner membrane transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
POR2	YIL114C	Putative mitochondrial porin (voltage-dependent anion channel)	regulation	1	1	1	DNA to cDNA expression microarray evidence
MNN4	YKL201C	Putative positive regulator of mannosylphosphate transferase Mnn6p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YSP3	YOR003W	Putative precursor of the subtilisin-like protease III	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR412C-A	YLR412C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR264C-A	YLR264C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR265C	YMR265C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR105W-A	YMR105W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YER085C	YER085C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR146C-A	YGR146C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIL055C	YIL055C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YER079W	YER079W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR045C	YGR045C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR034C-A	YDR034C-A	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YCL042W	YCL042W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YHR033W	YHR033W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YNL193W	YNL193W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIR016W	YIR016W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YNR014W	YNR014W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YJL107C	YJL107C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR389W	YOR389W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YEL025C	YEL025C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YKL063C	YKL063C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR196C-B	YBR196C-B	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIL046W-A	YIL046W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR246W-A	YDR246W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YER078W-A	YER078W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR196C-A	YBR196C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR156C-A	YLR156C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR159C-A	YLR159C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR154C-H	YLR154C-H	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR157C-C	YLR157C-C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YML100W-A	YML100W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR182C-A	YBR182C-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGL006W-A	YGL006W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR161W-C	YGR161W-C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPL277C	YPL277C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ECM12	YHR021W-A	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOL014W	YOL014W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YMR206W	YMR206W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLL066W-B	YLL066W-B	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR391C	YDR391C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR186W	YOR186W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FMP23	YBR047W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YOR387C	YOR387C	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YOR268C	YOR268C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YDR524C-B	YDR524C-B	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YBR285W	YBR285W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YIR042C	YIR042C	Putative protein of unknown function	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJR115W	YJR115W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR152C	YLR152C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YLR415C	YLR415C	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YML119W	YML119W	Putative protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YGR035C	YGR035C	Putative protein of unknown function, potential Cdc28p substrate	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPQ1	YOL092W	Putative vacuolar membrane transporter for cationic amino acids	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GSM1	YJL103C	Putative zinc cluster protein of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PYC1	YGL062W	Pyruvate carboxylase isoform	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPT11	YNL304W	Rab GTPase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
STE3	YKL178C	Receptor for a factor pheromone	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BCY1	YIL033C	Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA)	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR261C-D	YDR261C-D	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR035C-A	YLR035C-A	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YJR029W	YJR029W	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YLR157C-B	YLR157C-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR045C	YMR045C	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR050C	YMR050C	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPL257W-B	YPL257W-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR098C-B	YDR098C-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR365W-B	YDR365W-B	Retrotransposon TYA Gag and TYB Pol genes	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR170W-A	YDR170W-A	Retrotransposon TYA Gag gene	regulation	1	1	1	DNA to cDNA expression microarray evidence
YMR046C	YMR046C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YDR098C-A	YDR098C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
YGR038C-A	YGR038C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	regulation	1	1	1	DNA to cDNA expression microarray evidence
RNP1	YLL046C	Ribonucleoprotein that contains two RNA recognition motifs (RRM)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SML1	YML058W	Ribonucleotide reductase inhibitor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL10	YLR075W	Ribosomal 60S subunit protein L10	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL12A	YEL054C	Ribosomal 60S subunit protein L12A	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL20B	YOR312C	Ribosomal 60S subunit protein L20B	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL26A	YLR344W	Ribosomal 60S subunit protein L26A	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL26B	YGR034W	Ribosomal 60S subunit protein L26B	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL2A	YFR031C-A	Ribosomal 60S subunit protein L2A	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL43B	YJR094W-A	Ribosomal 60S subunit protein L43B	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPP2A	YOL039W	Ribosomal protein P2 alpha	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
REF2	YDR195W	RNA-binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RIE1	YGR250C	RNA binding protein and negative regulator of START	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
EDC2	YER035W	RNA-binding protein that directly activates mRNA decapping	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPC11	YDR045C	RNA polymerase III subunit C11	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPA135	YPR010C	RNA polymerase I second largest subunit A135	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPA14	YDR156W	RNA polymerase I subunit A14	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
LYS1	YIR034C	Saccharopine dehydrogenase (NAD+, L-lysine-forming)	regulation	1	1	1	DNA to cDNA expression microarray evidence
YNL092W	YNL092W	S-adenosylmethionine-dependent protein methyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PKH2	YOL100W	Serine/threonine protein kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IME2	YJL106W	Serine/threonine protein kinase involved in activation of meiosis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HST3	YOR025W	Sirtuin, histone H3 deacetylase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP42	YDR171W	Small heat shock protein (sHSP) with chaperone activity	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PMP3	YDR276C	Small plasma membrane protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HAL5	YJL165C	Snf1p-related nutrient-responsive protein kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CUR1	YPR158W	Sorting factor, central regulator of spatial protein quality control	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MRS1	YIR021W	Splicing protein	regulation	1	1	1	DNA to cDNA expression microarray evidence
SHC1	YER096W	Sporulation-specific activator of Chs3p (chitin synthase III)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YEH1	YLL012W	Steryl ester hydrolase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YPK1	YKL126W	S/T protein kinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
QCR6	YFR033C	Subunit 6 of the ubiquinol cytochrome-c reductase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATP14	YLR295C	Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SNZ1	YMR096W	Subunit of a two-component pyridoxal-5'-phosphate synthase	regulation	1	1	1	DNA to cDNA expression microarray evidence
HRP1	YOL123W	Subunit of cleavage factor I	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SCC2	YDR180W	Subunit of cohesin loading factor (Scc2p-Scc4p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
POL31	YJR006W	Subunit of DNA polymerase delta (polymerase III)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MMS1	YPR164W	Subunit of E3 ubiquitin ligase complex involved in replication repair	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
GID7	YCL039W	Subunit of GID Complex that binds directly to central component Vid30p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PXA1	YPL147W	Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa2p	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IDH2	YOR136W	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPN2	YIL075C	Subunit of the 26S proteasome	regulation	1	1	1	DNA to cDNA expression microarray evidence
APC4	YDR118W	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SLM4	YBR077C	Subunit of the EGO/GSE complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
IOC2	YLR095C	Subunit of the Isw1b complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
KGD1	YIL125W	Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
RMI1	YPL024W	Subunit of the RecQ (Sgs1p) - Topo III (Top3p) complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SNF6	YHL025W	Subunit of the SWI/SNF chromatin remodeling complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TAD2	YJL035C	Subunit of tRNA-specific adenosine-34 deaminase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CST9	YLR394W	SUMO E3 ligase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TPS1	YBR126C	Synthase subunit of trehalose-6-P synthase/phosphatase complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ILV1	YER086W	Threonine deaminase, catalyzes first step in isoleucine biosynthesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TAL1	YLR354C	Transaldolase, enzyme in the non-oxidative pentose phosphate pathway	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NQM1	YGR043C	Transaldolase of unknown function	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PDR3	YBL005W	Transcriptional activator of the pleiotropic drug resistance network	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NRM1	YNR009W	Transcriptional co-repressor of MBF-regulated gene expression	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SUB1	YMR039C	Transcriptional regulator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NRG1	YDR043C	Transcriptional repressor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MOT3	YMR070W	Transcriptional repressor, activator	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPI1	YIL119C	Transcription factor, allelic differences between S288C and Sigma1278b	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
MIG1	YGL035C	Transcription factor involved in glucose repression	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ACE2	YLR131C	Transcription factor required for septum destruction after cytokinesis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TKL1	YPR074C	Transketolase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
HEF3	YNL014W	Translational elongation factor EF-3	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
NST1	YNL091W	Translational inhibitor and suppressor of proteasome-assembly defects	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
TIF3	YPR163C	Translation initiation factor eIF-4B	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ZIP1	YDR285W	Transverse filament protein of the synaptonemal complex	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CIN1	YOR349W	Tubulin folding factor D involved in beta-tubulin (Tub2p) folding	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RIP1	YEL024W	Ubiquinol-cytochrome-c reductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC34	YDR054C	Ubiquitin-conjugating enzyme (E2)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
URM1	YIL008W	Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs	regulation	1	1	1	DNA to cDNA expression microarray evidence
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPL40B	YKR094C	Ubiquitin-ribosomal 60S subunit protein L40B fusion protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
FUR1	YHR128W	Uracil phosphoribosyltransferase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AVT7	YIL088C	Vacuolar amino acid transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
YPK9	YOR291W	Vacuolar protein with a possible role in sequestering heavy metals	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
ATG42	YBR139W	Vacuolar serine-type carboxypeptidase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AVT3	YKL146W	Vacuolar transporter	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SNC2	YOR327C	Vesicle membrane receptor protein (v-SNARE)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
BTN2	YGR142W	v-SNARE binding protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
AQY2	YLL052C	Water channel that mediates water transport across cell membranes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YJR096W	YJR096W	Xylose and arabinose reductase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
XKS1	YGR194C	Xylulokinase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RSF2	YJR127C	Zinc-finger protein	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RME1	YGR044C	Zinc finger protein involved in control of meiosis	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PRD1	YCL057W	Zinc metalloendopeptidase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
YKE4	YIL023C	Zinc transporter	regulation	1	1	1	DNA to cDNA expression microarray evidence
SUT2	YPR009W	Zn2Cys6 family transcription factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
PPN2	YNL217W	Zn2+-dependent endopolyphosphatase	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	regulation	1	1	1	qualitative western immunoblotting evidence
CLF1	YLR117C	Member of the NineTeen Complex (NTC)	genetic	1	1	1	Negative Genetic
CWC25	YNL245C	Splicing factor required for the first step of pre-mRNA splicing	genetic	1	1	1	Negative Genetic
AME1	YBR211C	Essential kinetochore protein associated with microtubules and SPBs	genetic	1	1	1	Negative Genetic
CTF3	YLR381W	Outer kinetochore protein that forms a complex with Mcm16p and Mcm22p	genetic	1	1	1	Negative Genetic
MCM22	YJR135C	Outer kinetochore protein and component of the Ctf3 subcomplex	genetic	1	1	1	Negative Genetic
RPB3	YIL021W	RNA polymerase II third largest subunit B44	genetic	1	1	1	Positive Genetic
RTF1	YGL244W	Subunit of RNAPII-associated chromatin remodeling Paf1 complex	genetic	1	1	1	Negative Genetic
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	genetic	1	1	1	Positive Genetic
CKB1	YGL019W	Beta regulatory subunit of casein kinase 2 (CK2)	genetic	1	1	1	Positive Genetic
SDS22	YKL193C	Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p	genetic	1	1	1	Negative Genetic
IKI3	YLR384C	Subunit of Elongator complex	genetic	1	1	1	Negative Genetic
SWC4	YGR002C	Component of the Swr1p complex that incorporates Htz1p into chromatin	genetic	1	1	1	Negative Genetic
STT4	YLR305C	Phosphatidylinositol-4-kinase	genetic	1	1	1	Positive Genetic
NOG1	YPL093W	Putative GTPase	genetic	1	1	1	Negative Genetic
NOP16	YER002W	Constituent of 66S pre-ribosomal particles	genetic	1	1	1	Negative Genetic
HOL1	YNR055C	Putative transporter in the major facilitator superfamily	genetic	1	1	1	Negative Genetic
POP1	YNL221C	Subunit of RNase MRP, nuclear RNase P and telomerase complexes	genetic	1	1	1	Negative Genetic
POP3	YNL282W	Subunit of both RNase MRP and nuclear RNase P	genetic	1	1	1	Negative Genetic
POP4	YBR257W	Subunit of both RNase MRP and nuclear RNase P	genetic	1	1	1	Negative Genetic
POP5	YAL033W	Subunit of both RNase MRP and nuclear RNase P	genetic	1	1	1	Negative Genetic
PRP8	YHR165C	Component of U4/U6-U5 snRNP complex	genetic	1	1	1	Positive Genetic
SMX3	YPR182W	Core Sm protein Sm F	genetic	1	1	1	Negative Genetic
NSE5	YML023C	Component of the SMC5-SMC6 complex	genetic	1	1	1	Positive Genetic
HAP5	YOR358W	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	genetic	1	1	1	Positive Genetic
MCM21	YDR318W	Component of the kinetochore sub-complex COMA	genetic	1	1	1	Negative Genetic
POL5	YEL055C	Protein involved in 60S assembly and pre-40S AFs recycling	genetic	1	1	1	Positive Genetic
BMH1	YER177W	14-3-3 protein, major isoform	genetic	1	1	1	Negative Genetic
MDM20	YOL076W	Non-catalytic subunit of the NatB N-terminal acetyltransferase	genetic	1	1	1	Negative Genetic
SAP155	YFR040W	Protein required for function of the Sit4p protein phosphatase	genetic	1	1	1	Negative Genetic
SAP190	YKR028W	Protein that forms a complex with the Sit4p protein phosphatase	genetic	1	1	1	Negative Genetic
NPL3	YDR432W	RNA-binding protein	genetic	1	1	1	Synthetic Rescue
CSL4	YNL232W	Exosome non-catalytic core component	genetic	1	1	1	Negative Genetic
LRP1	YHR081W	Nuclear exosome-associated nucleic acid binding protein	genetic	1	1	1	Positive Genetic
RPC40	YPR110C	RNA polymerase subunit AC40	genetic	1	1	1	Negative Genetic
RPC34	YNR003C	RNA polymerase III subunit C34	genetic	1	1	1	Negative Genetic
RPC82	YPR190C	RNA polymerase III subunit C82	genetic	1	1	1	Negative Genetic
CBC2	YPL178W	Small subunit of the heterodimeric cap binding complex with Sto1p	genetic	1	1	1	Negative Genetic
GCD11	YER025W	Gamma subunit of the translation initiation factor eIF2	genetic	1	1	1	Negative Genetic
RSC8	YFR037C	Component of the RSC chromatin remodeling complex	genetic	1	1	1	Negative Genetic
MED7	YOL135C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
SRB2	YHR041C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Positive Genetic
NUT1	YGL151W	Component of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
TFC1	YBR123C	Subunit of RNA polymerase III transcription initiation factor complex	genetic	1	1	1	Negative Genetic
MUD1	YBR119W	U1 snRNP A protein	genetic	1	1	1	Negative Genetic
PWP1	YLR196W	Protein with WD-40 repeats involved in rRNA processing	genetic	1	1	1	Negative Genetic
NAP1	YKR048C	Histone chaperone and assembly chaperone for Rps6a/b	genetic	1	1	1	Negative Genetic
CEX1	YOR112W	Component of nuclear aminoacylation-dependent tRNA export pathway	genetic	1	1	1	Positive Genetic
RPN10	YHR200W	Proteasome polyubiquitin receptor	genetic	1	1	1	Positive Genetic
RPN11	YFR004W	Metalloprotease subunit of 19S regulatory particle	genetic	1	1	1	Negative Genetic
RPN6	YDL097C	Essential, non-ATPase regulatory subunit of the 26S proteasome lid	genetic	1	1	1	Negative Genetic
RPN3	YER021W	Essential non-ATPase regulatory subunit of the 26S proteasome lid	genetic	1	1	1	Negative Genetic
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	1	1	1	Negative Genetic
GCD1	YOR260W	Gamma subunit of the translation initiation factor eIF2B	genetic	1	1	1	Negative Genetic
CFT2	YLR115W	Subunit of the mRNA cleavage and polyadenlylation factor (CPF)	genetic	1	1	1	Negative Genetic
MPE1	YKL059C	Subunit of CPF cleavage and polyadenylation factor and E3 Ub-ligase	genetic	1	1	1	Negative Genetic
SSD1	YDR293C	Translational repressor	genetic	1	1	1	Negative Genetic
PRE3	YJL001W	Beta 1 subunit of the 20S proteasome	genetic	1	1	1	Negative Genetic
ALA1	YOR335C	Cytoplasmic and mitochondrial alanyl-tRNA synthetase	genetic	1	1	1	Positive Genetic
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	Affinity Capture-RNA
NAB2	YGL122C	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
BMS1	YPL217C	GTPase required for ribosomal subunit synthesis and rRNA processing	genetic	1	1	1	Positive Genetic
THS1	YIL078W	Threonyl-tRNA synthetase	genetic	1	1	1	Positive Genetic
AOS1	YPR180W	Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Uba2p	genetic	1	1	1	Negative Genetic
APC1	YNL172W	Largest subunit of the Anaphase-Promoting Complex/Cyclosome	genetic	1	1	1	Negative Genetic
ARC15	YIL062C	Subunit of the ARP2/3 complex	genetic	1	1	1	Positive Genetic
ARD1	YHR013C	Subunit of protein N-terminal acetyltransferase NatA	genetic	1	1	1	Positive Genetic
ARP3	YJR065C	Essential component of the Arp2/3 complex	genetic	1	1	1	Negative Genetic
ASF1	YJL115W	Nucleosome assembly factor	genetic	1	1	1	Synthetic Lethality
BET3	YKR068C	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Negative Genetic
BUD31	YCR063W	Component of the SF3b subcomplex of the U2 snRNP	genetic	1	1	1	Negative Genetic
CEG1	YGL130W	Guanylyltransferase involved in mRNA 5' capping	genetic	1	1	1	Negative Genetic
AVO1	YOL078W	Component of the membrane-bound TORC2 complex	genetic	1	1	1	Positive Genetic
DCP1	YOL149W	Subunit of the Dcp1p-Dcp2p decapping enzyme complex	genetic	1	1	1	Positive Genetic
DNA2	YHR164C	ATP-dependent 5'-flap endonuclease and DNA helicase	genetic	1	1	1	Dosage Rescue
EDE1	YBL047C	Scaffold protein involved in the formation of early endocytic sites	genetic	1	1	1	Phenotypic Enhancement
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	genetic	1	1	1	Negative Genetic
ERG13	YML126C	3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase	genetic	1	1	1	Negative Genetic
FRS1	YLR060W	Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase	genetic	1	1	1	Negative Genetic
GCD7	YLR291C	Beta subunit of translation initiation factor eIF2B	genetic	1	1	1	Negative Genetic
ERV25	YML012W	Member of the p24 family involved in ER to Golgi transport	genetic	1	1	1	Negative Genetic
ESP1	YGR098C	Separase/separin, a caspase-like cysteine protease	genetic	1	1	1	Negative Genetic
BDF2	YDL070W	Protein involved in transcription initiation	genetic	1	1	1	Negative Genetic
HHF1	YBR009C	Histone H4	physical	1	1	1	Affinity Capture-MS
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	physical	1	1	1	Affinity Capture-RNA
HHF2	YNL030W	Histone H4	physical	1	1	1	Affinity Capture-MS
HTB2	YBL002W	Histone H2B	physical	1	1	1	Affinity Capture-MS
HTB2	YBL002W	Histone H2B	genetic	1	1	1	Negative Genetic
ACK1	YDL203C	Protein that functions in the cell wall integrity pathway	genetic	1	1	1	Negative Genetic
IOC3	YFR013W	Subunit of the Isw1a complex	genetic	1	1	1	Positive Genetic
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	physical	1	1	1	Affinity Capture-RNA
KIN3	YAR018C	Nonessential serine/threonine protein kinase	genetic	1	1	1	Positive Genetic
KRR1	YCL059C	Nucleolar protein required for rRNA synthesis and ribosomal assembly	genetic	1	1	1	Negative Genetic
LCB1	YMR296C	Component of serine palmitoyltransferase	genetic	1	1	1	Positive Genetic
LST8	YNL006W	Protein required for the transport of Gap1p	genetic	1	1	1	Negative Genetic
MRP7	YNL005C	Mitochondrial ribosomal protein of the large subunit	genetic	1	1	1	Negative Genetic
MSH2	YOL090W	Protein that binds to DNA mismatches	genetic	1	1	1	Negative Genetic
CMR1	YDL156W	Nuclear protein with role in transcription, protein quality control	physical	1	1	1	Affinity Capture-MS
MTR10	YOR160W	Nuclear import receptor	genetic	1	1	1	Negative Genetic
MUM2	YBR057C	Protein essential for meiotic DNA replication and sporulation	genetic	1	1	1	Negative Genetic
MYO2	YOR326W	Type V myosin motor involved in actin-based transport of cargos	genetic	1	1	1	Positive Genetic
INO80	YGL150C	Nucleosome spacing factor	genetic	1	1	1	Negative Genetic
IES5	YER092W	Non-essential INO80 chromatin remodeling complex subunit	genetic	1	1	1	Negative Genetic
IES1	YFL013C	Subunit of the INO80 chromatin remodeling complex	genetic	1	1	1	Negative Genetic
AFG2	YLR397C	ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex	genetic	1	1	1	Negative Genetic
GIM5	YML094W	Subunit of the heterohexameric cochaperone prefoldin complex	genetic	1	1	1	Positive Genetic
PAC10	YGR078C	Part of the heteromeric co-chaperone GimC/prefoldin complex	genetic	1	1	1	Negative Genetic
LAT1	YNL071W	Dihydrolipoamide acetyltransferase component (E2) of the PDC	genetic	1	1	1	Negative Genetic
LPD1	YFL018C	Dihydrolipoamide dehydrogenase	genetic	1	1	1	Negative Genetic
PDA1	YER178W	E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex	genetic	1	1	1	Negative Genetic
DIG1	YPL049C	MAP kinase-responsive inhibitor of the Ste12p transcription factor	genetic	1	1	1	Negative Genetic
POL1	YNL102W	Catalytic subunit of the DNA polymerase I alpha-primase complex	genetic	1	1	1	Negative Genetic
HSP82	YPL240C	Hsp90 chaperone	genetic	1	1	1	Synthetic Lethality
PRP4	YPR178W	Splicing factor	genetic	1	1	1	Positive Genetic
DAM1	YGR113W	Essential subunit of the Dam1 complex (aka DASH complex)	genetic	1	1	1	Negative Genetic
POL2	YNL262W	Catalytic subunit of DNA polymerase (II) epsilon	genetic	1	1	1	Synthetic Growth Defect
HTA2	YBL003C	Histone H2A	physical	1	1	1	Affinity Capture-MS
MVD1	YNR043W	Mevalonate pyrophosphate decarboxylase	genetic	1	1	1	Negative Genetic
ESF2	YNR054C	Essential nucleolar protein involved in pre-18S rRNA processing	genetic	1	1	1	Negative Genetic
NOC4	YPR144C	Nucleolar protein	genetic	1	1	1	Negative Genetic
GCN20	YFR009W	Positive regulator of the Gcn2p kinase activity	genetic	1	1	1	Negative Genetic
ILV1	YER086W	Threonine deaminase, catalyzes first step in isoleucine biosynthesis	genetic	1	1	1	Negative Genetic
PTI1	YGR156W	Essential component of CPF (cleavage and polyadenylation factor)	genetic	1	1	1	Negative Genetic
RET2	YFR051C	Delta subunit of the coatomer complex (COPI)	genetic	1	1	1	Negative Genetic
RFC2	YJR068W	Subunit of heteropentameric Replication factor C (RF-C)	genetic	1	1	1	Negative Genetic
RFC1	YOR217W	Subunit of heteropentameric Replication factor C (RF-C)	genetic	1	1	1	Positive Genetic
RFC5	YBR087W	Subunit of heteropentameric Replication factor C (RF-C)	genetic	1	1	1	Negative Genetic
RFX1	YLR176C	Major transcriptional repressor of DNA-damage-regulated genes	genetic	1	1	1	Negative Genetic
PGD1	YGL025C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
RPC11	YDR045C	RNA polymerase III subunit C11	genetic	1	1	1	Negative Genetic
DEP1	YAL013W	Component of the Rpd3L histone deacetylase complex	genetic	1	1	1	Negative Genetic
PHO23	YNL097C	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-MS
PHO23	YNL097C	Component of the Rpd3L histone deacetylase complex	genetic	1	1	1	Negative Genetic
CSI1	YMR025W	Subunit of the Cop9 signalosome	genetic	1	1	1	Positive Genetic
MTR3	YGR158C	Exosome non-catalytic core component	genetic	1	1	1	Negative Genetic
NUP120	YKL057C	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	genetic	1	1	1	Synthetic Lethality
NUP84	YDL116W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
ANP1	YEL036C	Subunit of the alpha-1,6 mannosyltransferase complex	genetic	1	1	1	Positive Genetic
SEC66	YBR171W	Non-essential subunit of Sec63 complex	genetic	1	1	1	Negative Genetic
CSE1	YGL238W	Nuclear envelope protein that acts as a recycling factor	genetic	1	1	1	Negative Genetic
SAP30	YMR263W	Component of Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-MS
SAP30	YMR263W	Component of Rpd3L histone deacetylase complex	genetic	1	1	1	Negative Genetic
SIP1	YDR422C	One of three alternate beta-subunits of the Snf1p kinase complex	genetic	1	1	1	Negative Genetic
RPT5	YOR117W	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	1	1	1	Negative Genetic
MLP1	YKR095W	Myosin-like protein associated with the nuclear envelope	genetic	1	1	1	Negative Genetic
SRB6	YBR253W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
SSL1	YLR005W	Subunit of the core form of RNA polymerase transcription factor TFIIH	genetic	1	1	1	Negative Genetic
SEN1	YLR430W	ATP-dependent 5' to 3' RNA/DNA and DNA helicase	genetic	1	1	1	Negative Genetic
SGV1	YPR161C	Cyclin (Bur2p)-dependent protein kinase	genetic	1	1	1	Negative Genetic
STT3	YGL022W	Catalytic subunit of the oligosaccharyltransferase complex of the ER l	genetic	1	1	1	Positive Genetic
SUI3	YPL237W	Beta subunit of the translation initiation factor eIF2	genetic	1	1	1	Negative Genetic
TAF1	YGR274C	TFIID subunit, involved in RNA pol II transcription initiation	genetic	1	1	1	Positive Genetic
TKL1	YPR074C	Transketolase	genetic	1	1	1	Negative Genetic
LTE1	YAL024C	Protein similar to GDP/GTP exchange factors	genetic	1	1	1	Synthetic Lethality
MCM2	YBL023C	Protein involved in DNA replication	genetic	1	1	1	Synthetic Rescue
TRS20	YBR254C	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Negative Genetic
RPT4	YOR259C	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	1	1	1	Negative Genetic
HSE1	YHL002W	Subunit of the endosomal Vps27p-Hse1p complex	genetic	1	1	1	Positive Genetic
TLG2	YOL018C	Syntaxin-like t-SNARE	genetic	1	1	1	Negative Genetic
FUN30	YAL019W	Snf2p family member with ATP-dependent chromatin remodeling activity	genetic	1	1	1	Negative Genetic
SET1	YHR119W	Histone methyltransferase, subunit of the COMPASS (Set1C) complex	genetic	1	1	1	Negative Genetic
HEK2	YBL032W	RNA binding protein involved in asymmetric localization of ASH1 mRNA	physical	1	1	1	Affinity Capture-RNA
RRP12	YPL012W	Protein required for export of the ribosomal subunits	genetic	1	1	1	Negative Genetic
GET3	YDL100C	Guanine nucleotide exchange factor for Gpa1p	genetic	1	1	1	Negative Genetic
FAR11	YNL127W	Protein involved in recovery from cell cycle arrest	genetic	1	1	1	Negative Genetic
EGD2	YHR193C	Alpha subunit of the nascent polypeptide-associated complex (NAC)	genetic	1	1	1	Synthetic Growth Defect
PHO84	YML123C	High-affinity inorganic phosphate (Pi) transporter	genetic	1	1	1	Negative Genetic
IRA2	YOL081W	GTPase-activating protein	genetic	1	1	1	Negative Genetic
CAF20	YOR276W	Phosphoprotein of the mRNA cap-binding complex	physical	1	1	1	Affinity Capture-RNA
TPK1	YJL164C	cAMP-dependent protein kinase catalytic subunit	physical	1	1	1	Biochemical Activity
RIM15	YFL033C	Protein kinase involved in cell proliferation in response to nutrients	genetic	1	1	1	Phenotypic Suppression
SER1	YOR184W	3-phosphoserine aminotransferase	genetic	1	1	1	Negative Genetic
HTB1	YDR224C	Histone H2B	physical	1	1	1	Affinity Capture-MS
CMP2	YML057W	Calcineurin A	physical	1	1	1	Reconstituted Complex
CMP2	YML057W	Calcineurin A	genetic	1	1	1	Negative Genetic
PBS2	YJL128C	MAP kinase kinase of the HOG signaling pathway	genetic	1	1	1	Negative Genetic
FET3	YMR058W	Ferro-O2-oxidoreductase	genetic	1	1	1	Negative Genetic
HSH49	YOR319W	U2-snRNP associated splicing factor	genetic	1	1	1	Negative Genetic
OYE2	YHR179W	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	genetic	1	1	1	Negative Genetic
OYE3	YPL171C	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	genetic	1	1	1	Negative Genetic
PPZ2	YDR436W	Serine/threonine protein phosphatase Z, isoform of Ppz1p	genetic	1	1	1	Positive Genetic
PMA2	YPL036W	Plasma membrane H+-ATPase	genetic	1	1	1	Negative Genetic
DUN1	YDL101C	Cell-cycle checkpoint S/T protein kinase	genetic	1	1	1	Negative Genetic
SUI2	YJR007W	Alpha subunit of the translation initiation factor eIF2	genetic	1	1	1	Negative Genetic
ATG12	YBR217W	Ubiquitin-like modifier involved in autophagy and the Cvt pathway	genetic	1	1	1	Negative Genetic
RAD55	YDR076W	Protein that stimulates strand exchange	genetic	1	1	1	Synthetic Growth Defect
TPS2	YDR074W	Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex	genetic	1	1	1	Phenotypic Suppression
SEC18	YBR080C	AAA ATPase and SNARE disassembly chaperone	genetic	1	1	1	Negative Genetic
PBR1	YNL181W	Putative oxidoreductase	genetic	1	1	1	Positive Genetic
DYN2	YDR424C	Cytoplasmic light chain dynein, microtubule motor protein	genetic	1	1	1	Negative Genetic
ERG10	YPL028W	Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase)	genetic	1	1	1	Negative Genetic
MET30	YIL046W	F-box protein containing five copies of the WD40 motif	genetic	1	1	1	Negative Genetic
CDC20	YGL116W	Activator of anaphase-promoting complex/cyclosome (APC/C)	genetic	1	1	1	Negative Genetic
SSK2	YNR031C	MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway	genetic	1	1	1	Negative Genetic
SMC6	YLR383W	Subunit of the SMC5-SMC6 complex	genetic	1	1	1	Positive Genetic
ATG7	YHR171W	Autophagy-related protein and dual specificity member of the E1 family	genetic	1	1	1	Positive Genetic
HSL7	YBR133C	Protein arginine N-methyltransferase	genetic	1	1	1	Negative Genetic
CDC60	YPL160W	Cytosolic leucyl tRNA synthetase	genetic	1	1	1	Negative Genetic
GPN3	YLR243W	Putative GTPase with a role in biogenesis of RNA pol II and polIII	genetic	1	1	1	Negative Genetic
RAD6	YGL058W	Ubiquitin-conjugating enzyme (E2)	genetic	1	1	1	Synthetic Lethality
MAK11	YKL021C	Protein involved in an early step of 60S ribosomal subunit biogenesis	genetic	1	1	1	Negative Genetic
RSN1	YMR266W	Membrane protein of unknown function	genetic	1	1	1	Negative Genetic
ERG6	YML008C	Delta(24)-sterol C-methyltransferase	genetic	1	1	1	Negative Genetic
NTF2	YER009W	Nuclear envelope protein	genetic	1	1	1	Negative Genetic
GAL7	YBR018C	Galactose-1-phosphate uridyl transferase	genetic	1	1	1	Negative Genetic
RAD24	YER173W	Checkpoint protein	genetic	1	1	1	Negative Genetic
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	genetic	1	1	1	Negative Genetic
KSP1	YHR082C	Serine/threonine protein kinase	genetic	1	1	1	Positive Genetic
SEG1	YMR086W	Component of eisosome required for proper eisosome assembly	genetic	1	1	1	Negative Genetic
RAS2	YNL098C	GTP-binding protein	genetic	1	1	1	Negative Genetic
MEK1	YOR351C	Meiosis-specific serine/threonine protein kinase	physical	1	1	1	Biochemical Activity
DPB11	YJL090C	DNA replication initiation protein	genetic	1	1	1	Negative Genetic
SLT2	YHR030C	Serine/threonine MAP kinase	genetic	1	1	1	Negative Genetic
SGT1	YOR057W	Cochaperone protein	genetic	1	1	1	Negative Genetic
MRE11	YMR224C	Nuclease subunit of the MRX complex with Rad50p and Xrs2p	genetic	1	1	1	Negative Genetic
MKK2	YPL140C	MAPKK involved in the protein kinase C signaling pathway	genetic	1	1	1	Negative Genetic
BCK2	YER167W	Serine/threonine-rich protein involved in PKC1 signaling pathway	genetic	1	1	1	Negative Genetic
RAD14	YMR201C	Subunit of Nucleotide Excision Repair Factor 1 (NEF1)	genetic	1	1	1	Positive Genetic
KIN28	YDL108W	Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly	genetic	1	1	1	Negative Genetic
ATG20	YDL113C	Sorting nexin family member	genetic	1	1	1	Negative Genetic
CIK1	YMR198W	Kinesin-associated protein	genetic	1	1	1	Negative Genetic
MIH1	YMR036C	Protein tyrosine phosphatase	genetic	1	1	1	Negative Genetic
SKI2	YLR398C	Ski complex component and putative RNA helicase	genetic	1	1	1	Positive Genetic
GSY1	YFR015C	Glycogen synthase	genetic	1	1	1	Negative Genetic
SSN8	YNL025C	Cyclin-like component of RNA polymerase II holoenzyme	genetic	1	1	1	Positive Genetic
MCK1	YNL307C	Dual-specificity ser/thr and tyrosine protein kinase	physical	1	1	1	Two-hybrid
APA1	YCL050C	AP4A phosphorylase	genetic	1	1	1	Negative Genetic
FUB1	YCR076C	Proteasome-binding protein	genetic	1	1	1	Negative Genetic
EAP1	YKL204W	eIF4E-associated protein, competes with eIF4G for binding to eIF4E	genetic	1	1	1	Positive Genetic
BUB3	YOR026W	Kinetochore checkpoint WD40 repeat protein	genetic	1	1	1	Negative Genetic
IST3	YIR005W	Component of the U2 snRNP	genetic	1	1	1	Positive Genetic
NUP53	YMR153W	FG-nucleoporin component of central core of nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
LEM3	YNL323W	Membrane protein of the plasma membrane and ER	genetic	1	1	1	Negative Genetic
GBP2	YCL011C	Poly(A+) RNA-binding protein	genetic	1	1	1	Negative Genetic
ADH6	YMR318C	NADPH-dependent medium chain alcohol dehydrogenase	genetic	1	1	1	Negative Genetic
PMI40	YER003C	Mannose-6-phosphate isomerase	genetic	1	1	1	Negative Genetic
PMD1	YER132C	Protein with an N-terminal kelch-like domain	genetic	1	1	1	Negative Genetic
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	genetic	1	1	1	Negative Genetic
PML1	YLR016C	Subunit of the RES complex	genetic	1	1	1	Negative Genetic
SNF4	YGL115W	Activating gamma subunit of the AMP-activated Snf1p kinase complex	genetic	1	1	1	Negative Genetic
DHR2	YKL078W	Predominantly nucleolar DEAH-box ATP-dependent RNA helicase	genetic	1	1	1	Positive Genetic
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	genetic	1	1	1	Negative Genetic
ATP7	YKL016C	Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase	genetic	1	1	1	Negative Genetic
DUO1	YGL061C	Essential subunit of the Dam1 complex (aka DASH complex)	genetic	1	1	1	Negative Genetic
DAL82	YNL314W	Positive regulator of allophanate inducible genes	genetic	1	1	1	Negative Genetic
ENT3	YJR125C	Protein containing an N-terminal epsin-like domain	genetic	1	1	1	Negative Genetic
ARG81	YML099C	Zinc finger transcription factor involved in arginine-responsive genes	physical	1	1	1	Two-hybrid
ARG81	YML099C	Zinc finger transcription factor involved in arginine-responsive genes	genetic	1	1	1	Positive Genetic
GZF3	YJL110C	GATA zinc finger protein	genetic	1	1	1	Negative Genetic
GDS1	YOR355W	Protein involved in histone H4 acetylation at ribosomal protein genes	physical	1	1	1	Two-hybrid
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	genetic	1	1	1	Synthetic Growth Defect
IRE1	YHR079C	Serine-threonine kinase and endoribonuclease	genetic	1	1	1	Negative Genetic
ATG19	YOL082W	Receptor protein for the cytoplasm-to-vacuole targeting (Cvt) pathway	physical	1	1	1	Two-hybrid
GCN4	YEL009C	bZIP transcriptional activator of amino acid biosynthetic genes	genetic	1	1	1	Negative Genetic
HAA1	YPR008W	Transcriptional activator involved in adaptation to weak acid stress	genetic	1	1	1	Positive Genetic
COG2	YGR120C	Essential component of the conserved oligomeric Golgi complex	genetic	1	1	1	Negative Genetic
NDC80	YIL144W	Component of the kinetochore-associated Ndc80 complex	genetic	1	1	1	Negative Genetic
NUF2	YOL069W	Component of the kinetochore-associated Ndc80 complex	genetic	1	1	1	Negative Genetic
NUP57	YGR119C	FG-nucleoporin component of central core of the nuclear pore complex	genetic	1	1	1	Negative Genetic
MMR1	YLR190W	Phosphorylated protein of the mitochondrial outer membrane	genetic	1	1	1	Positive Genetic
PPG1	YNR032W	Serine protein phosphatase involved in formation of FAR complex	genetic	1	1	1	Positive Genetic
MND2	YIR025W	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	1	1	1	Negative Genetic
IME1	YJR094C	Master regulator of meiosis that is active only during meiotic events	genetic	1	1	1	Synthetic Rescue
PFS1	YHR185C	Sporulation protein required for prospore membrane formation	genetic	1	1	1	Negative Genetic
NBA1	YOL070C	Protein involved in axial bud site selection	genetic	1	1	1	Negative Genetic
SOR2	YDL246C	Sorbitol dehydrogenase	genetic	1	1	1	Negative Genetic
SBH2	YER019C-A	Ssh1p-Sss1p-Sbh2p complex component	genetic	1	1	1	Negative Genetic
GPI16	YHR188C	Subunit of the glycosylphosphatidylinositol transamidase complex	genetic	1	1	1	Negative Genetic
GPN2	YOR262W	Putative GTPase with a specific role in RNA pol II and polIII biogenes	genetic	1	1	1	Negative Genetic
ASK10	YGR097W	Regulator of the Fps1p glycerol channel	genetic	1	1	1	Negative Genetic
PRR1	YKL116C	Serine/threonine protein kinase	genetic	1	1	1	Negative Genetic
ASK1	YKL052C	Essential subunit of the Dam1 complex (aka DASH complex)	genetic	1	1	1	Negative Genetic
MDY2	YOL111C	Protein involved in inserting tail-anchored proteins into ER membranes	genetic	1	1	1	Negative Genetic
OCA2	YNL056W	Protein of unknown function	genetic	1	1	1	Positive Genetic
NST1	YNL091W	Translational inhibitor and suppressor of proteasome-assembly defects	genetic	1	1	1	Positive Genetic
COG4	YPR105C	Essential component of the conserved oligomeric Golgi complex	genetic	1	1	1	Negative Genetic
AIM4	YBR194W	Protein proposed to be associated with the nuclear pore complex	genetic	1	1	1	Negative Genetic
CEP3	YMR168C	Essential kinetochore protein	genetic	1	1	1	Negative Genetic
COG5	YNL051W	Component of the conserved oligomeric Golgi complex	genetic	1	1	1	Negative Genetic
ELP4	YPL101W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	genetic	1	1	1	Negative Genetic
TFC4	YGR047C	Subunit of RNA polymerase III transcription initiation factor complex	genetic	1	1	1	Negative Genetic
RFT1	YBL020W	Membrane protein required for translocation of Man5GlcNac2-PP-Dol	genetic	1	1	1	Positive Genetic
NFI1	YOR156C	SUMO E3 ligase	genetic	1	1	1	Negative Genetic
CET1	YPL228W	RNA 5'-triphosphatase involved in mRNA 5' capping	genetic	1	1	1	Negative Genetic
SAC3	YDR159W	mRNA export factor	genetic	1	1	1	Negative Genetic
SWD2	YKL018W	Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex	genetic	1	1	1	Negative Genetic
SWC7	YLR385C	Protein of unknown function	genetic	1	1	1	Negative Genetic
MSN2	YMR037C	Stress-responsive transcriptional activator	genetic	1	1	1	Phenotypic Suppression
RPP1	YHR062C	Subunit of both RNase MRP and nuclear RNase P	genetic	1	1	1	Negative Genetic
IES4	YOR189W	Component of the INO80 chromatiin remodeling complex	genetic	1	1	1	Positive Genetic
PRP2	YNR011C	RNA-dependent DExD/H-box ATPase	genetic	1	1	1	Negative Genetic
CBF1	YJR060W	Basic helix-loop-helix (bHLH) protein	genetic	1	1	1	Positive Genetic
RGT1	YKL038W	Glucose-responsive transcription factor	genetic	1	1	1	Negative Genetic
SWI6	YLR182W	Transcription cofactor	genetic	1	1	1	Negative Genetic
RTG3	YBL103C	bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways	genetic	1	1	1	Negative Genetic
CSE4	YKL049C	Centromeric histone H3-like protein	genetic	1	1	1	Positive Genetic
BUB1	YGR188C	Protein kinase involved in the cell cycle checkpoint into anaphase	genetic	1	1	1	Negative Genetic
CLB5	YPR120C	B-type cyclin involved in DNA replication during S phase	genetic	1	1	1	Negative Genetic
DCD1	YHR144C	Deoxycytidine monophosphate (dCMP) deaminase	genetic	1	1	1	Positive Genetic
GCD10	YNL062C	Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p	genetic	1	1	1	Negative Genetic
HOS1	YPR068C	Class I histone deacetylase (HDAC) family member	genetic	1	1	1	Negative Genetic
IOC2	YLR095C	Subunit of the Isw1b complex	genetic	1	1	1	Negative Genetic
MPS1	YDL028C	Dual-specificity kinase	genetic	1	1	1	Negative Genetic
BIK1	YCL029C	Microtubule-associated protein	genetic	1	1	1	Negative Genetic
CBF2	YGR140W	Essential kinetochore protein	genetic	1	1	1	Negative Genetic
SAS2	YMR127C	Histone acetyltransferase (HAT) catalytic subunit of the SAS complex	genetic	1	1	1	Negative Genetic
SEC20	YDR498C	Membrane glycoprotein v-SNARE	genetic	1	1	1	Negative Genetic
SEC61	YLR378C	Conserved ER protein translocation channel	genetic	1	1	1	Negative Genetic
SEC22	YLR268W	R-SNARE protein	genetic	1	1	1	Negative Genetic
RAP1	YNL216W	Essential DNA-binding transcription regulator that binds many loci	genetic	1	1	1	Negative Genetic
SNC1	YAL030W	Vesicle membrane receptor protein (v-SNARE)	genetic	1	1	1	Negative Genetic
SSN3	YPL042C	Component of the RNA polymerase II mediator complex	genetic	1	1	1	Positive Genetic
SRO7	YPR032W	Effector of Rab GTPase Sec4p	genetic	1	1	1	Positive Genetic
STU1	YBL034C	Microtubule plus-end-tracking non-motor protein	genetic	1	1	1	Negative Genetic
SYN8	YAL014C	Endosomal SNARE related to mammalian syntaxin 8	genetic	1	1	1	Positive Genetic
PAM18	YLR008C	Subunit of the import motor (PAM complex)	genetic	1	1	1	Negative Genetic
TRX1	YLR043C	Cytoplasmic thioredoxin isoenzyme	genetic	1	1	1	Negative Genetic
TUB4	YLR212C	Gamma-tubulin	genetic	1	1	1	Synthetic Growth Defect
STP22	YCL008C	Component of the ESCRT-I complex	genetic	1	1	1	Positive Genetic
SRN2	YLR119W	Component of the ESCRT-I complex	genetic	1	1	1	Negative Genetic
SEC16	YPL085W	COPII vesicle coat protein required for ER transport vesicle budding	genetic	1	1	1	Negative Genetic
SPC110	YDR356W	Inner plaque spindle pole body (SPB) component	genetic	1	1	1	Synthetic Growth Defect
NUP170	YBL079W	Subunit of inner ring of nuclear pore complex (NPC)	genetic	1	1	1	Synthetic Growth Defect
BAG7	YOR134W	Rho GTPase activating protein (RhoGAP)	genetic	1	1	1	Negative Genetic
MPT5	YGL178W	mRNA-binding protein of the PUF family	physical	1	1	1	Affinity Capture-RNA
MPT5	YGL178W	mRNA-binding protein of the PUF family	genetic	1	1	1	Negative Genetic
SIL1	YOL031C	Nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p	genetic	1	1	1	Negative Genetic
SRM1	YGL097W	Nucleotide exchange factor for Gsp1p	genetic	1	1	1	Negative Genetic
CSG2	YBR036C	Endoplasmic reticulum membrane protein	genetic	1	1	1	Negative Genetic
POL32	YJR043C	Third subunit of DNA polymerase delta	genetic	1	1	1	Positive Genetic
SLA2	YNL243W	Adaptor protein that links actin to clathrin and endocytosis	genetic	1	1	1	Positive Genetic
SML1	YML058W	Ribonucleotide reductase inhibitor	genetic	1	1	1	Phenotypic Enhancement
MUD2	YKL074C	Protein involved in early pre-mRNA splicing	genetic	1	1	1	Negative Genetic
RBL2	YOR265W	Protein involved in microtubule morphogenesis	genetic	1	1	1	Negative Genetic
SPT10	YJL127C	Histone H3 acetylase with a role in transcriptional regulation	physical	1	1	1	Affinity Capture-MS
SMI1	YGR229C	Protein involved in the regulation of cell wall synthesis	genetic	1	1	1	Positive Genetic
ARG80	YMR042W	Transcription factor involved in regulating arginine-responsive genes	physical	1	1	1	Two-hybrid
ARG82	YDR173C	Inositol polyphosphate multikinase (IPMK)	genetic	1	1	1	Positive Genetic
ERG25	YGR060W	C-4 methyl sterol oxidase	genetic	1	1	1	Negative Genetic
HMT1	YBR034C	Nuclear SAM-dependent mono- and asymmetric methyltransferase	genetic	1	1	1	Synthetic Rescue
MET28	YIR017C	bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex	genetic	1	1	1	Negative Genetic
GPR1	YDL035C	Plasma membrane G protein coupled receptor (GPCR)	genetic	1	1	1	Negative Genetic
SPC25	YER018C	Component of the kinetochore-associated Ndc80 complex	genetic	1	1	1	Negative Genetic
SPC29	YPL124W	Inner plaque spindle pole body (SPB) component	genetic	1	1	1	Negative Genetic
TAP42	YMR028W	Essential protein involved in the TOR signaling pathway	genetic	1	1	1	Positive Genetic
TEA1	YOR337W	Ty1 enhancer activator involved in Ty enhancer-mediated transcription	physical	1	1	1	Two-hybrid
SAM2	YDR502C	S-adenosylmethionine synthetase	genetic	1	1	1	Negative Genetic
RPL1B	YGL135W	Ribosomal 60S subunit protein L1B	genetic	1	1	1	Positive Genetic
ATP10	YLR393W	Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase	genetic	1	1	1	Negative Genetic
CLA4	YNL298W	Cdc42p-activated signal transducing kinase	genetic	1	1	1	Negative Genetic
PFY1	YOR122C	Profilin	genetic	1	1	1	Positive Genetic
CHS5	YLR330W	Component of the exomer complex	genetic	1	1	1	Positive Genetic
HMS1	YOR032C	bHLH protein with similarity to myc-family transcription factors	genetic	1	1	1	Positive Genetic
PRI1	YIR008C	Subunit of DNA primase	genetic	1	1	1	Positive Genetic
TOF2	YKR010C	Protein required for rDNA silencing and mitotic rDNA condensation	genetic	1	1	1	Negative Genetic
RDI1	YDL135C	Rho GDP dissociation inhibitor	genetic	1	1	1	Negative Genetic
ERV29	YGR284C	Protein localized to COPII-coated vesicles	genetic	1	1	1	Negative Genetic
MNN11	YJL183W	Subunit of a Golgi mannosyltransferase complex	genetic	1	1	1	Negative Genetic
PBI2	YNL015W	Cytosolic inhibitor of vacuolar proteinase B (PRB1)	genetic	1	1	1	Negative Genetic
MSL5	YLR116W	Component of commitment complex	genetic	1	1	1	Negative Genetic
TFB2	YPL122C	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	genetic	1	1	1	Negative Genetic
BET4	YJL031C	Alpha subunit of Type II geranylgeranyltransferase	genetic	1	1	1	Negative Genetic
MON2	YNL297C	Protein with a role in endocytosis and vacuole integrity	genetic	1	1	1	Negative Genetic
PDR1	YGL013C	Transcription factor that regulates the pleiotropic drug response	genetic	1	1	1	Phenotypic Enhancement
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	genetic	1	1	1	Negative Genetic
MDM31	YHR194W	Mitochondrial protein that may have a role in phospholipid metabolism	genetic	1	1	1	Positive Genetic
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	genetic	1	1	1	Negative Genetic
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	genetic	1	1	1	Negative Genetic
EUC1	YMR111C	Sequence-specific DNA binding protein	genetic	1	1	1	Negative Genetic
ARO8	YGL202W	Aromatic aminotransferase I	genetic	1	1	1	Negative Genetic
PXA2	YKL188C	Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa1p	genetic	1	1	1	Negative Genetic
SLK19	YOR195W	Kinetochore-associated protein	genetic	1	1	1	Negative Genetic
TPM1	YNL079C	Major isoform of tropomyosin	genetic	1	1	1	Positive Genetic
ATP18	YML081C-A	Subunit of the mitochondrial F1F0 ATP synthase	genetic	1	1	1	Negative Genetic
FRA1	YLL029W	Protein involved in negative regulation of iron regulon transcription	genetic	1	1	1	Negative Genetic
ASG7	YJL170C	Protein that regulates signaling from G protein beta subunit Ste4p	genetic	1	1	1	Negative Genetic
RIO1	YOR119C	Serine kinase involved in cell cycle regulation and rDNA integrity	genetic	1	1	1	Positive Genetic
RPL40A	YIL148W	Ubiquitin-ribosomal 60S subunit protein L40A fusion protein	genetic	1	1	1	Positive Genetic
SEC11	YIR022W	18kDa catalytic subunit of the Signal Peptidase Complex (SPC)	genetic	1	1	1	Positive Genetic
DIC1	YLR348C	Mitochondrial dicarboxylate carrier	genetic	1	1	1	Negative Genetic
ERG7	YHR072W	Lanosterol synthase	genetic	1	1	1	Negative Genetic
EHT1	YBR177C	Octanoyl-CoA:ethanol acyltransferase	genetic	1	1	1	Negative Genetic
SWD3	YBR175W	Essential subunit of the COMPASS (Set1C) complex	genetic	1	1	1	Negative Genetic
MBA1	YBR185C	Membrane-associated mitochondrial ribosome receptor	genetic	1	1	1	Negative Genetic
PBP4	YDL053C	Pbp1p binding protein	physical	1	1	1	Affinity Capture-MS
SAT4	YCR008W	Ser/Thr protein kinase involved in salt tolerance, nutrient response	genetic	1	1	1	Positive Genetic
BPH1	YCR032W	Protein homologous to Chediak-Higashi syndrome and Beige proteins	genetic	1	1	1	Negative Genetic
COQ10	YOL008W	Coenzyme Q (ubiquinone) binding protein	genetic	1	1	1	Negative Genetic
KCS1	YDR017C	Inositol hexakisphosphate and inositol heptakisphosphate kinase	genetic	1	1	1	Negative Genetic
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-MS
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	physical	1	1	1	Affinity Capture-MS
YAF9	YNL107W	Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes	genetic	1	1	1	Negative Genetic
VPS70	YJR126C	Protein of unknown function involved in vacuolar protein sorting	genetic	1	1	1	Negative Genetic
YBL036C	YBL036C	Putative non-specific single-domain racemase	genetic	1	1	1	Negative Genetic
VMA3	YEL027W	Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase	genetic	1	1	1	Negative Genetic
VMA21	YGR105W	Integral membrane protein required for V-ATPase function	genetic	1	1	1	Synthetic Growth Defect
VOA1	YGR106C	ER protein that functions in assembly of the V0 sector of V-ATPase	genetic	1	1	1	Synthetic Growth Defect
YAP6	YDR259C	Basic leucine zipper (bZIP) transcription factor	genetic	1	1	1	Negative Genetic
URN1	YPR152C	Protein of unknown function containing WW and FF domains	genetic	1	1	1	Positive Genetic
YMR1	YJR110W	Phosphatidylinositol 3-phosphate (PI3P) phosphatase	genetic	1	1	1	Positive Genetic
YKU70	YMR284W	Subunit of the telomeric Ku complex (Yku70p-Yku80p)	genetic	1	1	1	Negative Genetic
YNL190W	YNL190W	Hydrophilin essential in desiccation-rehydration process	genetic	1	1	1	Negative Genetic
VPS24	YKL041W	One of four subunits of the ESCRT-III complex	genetic	1	1	1	Negative Genetic
VPS30	YPL120W	Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II	genetic	1	1	1	Negative Genetic
VPS21	YOR089C	Endosomal Rab family GTPase	genetic	1	1	1	Negative Genetic
UTH1	YKR042W	Mitochondrial inner membrane protein	genetic	1	1	1	Negative Genetic
VPS55	YJR044C	Late endosomal protein involved in late endosome to vacuole transport	genetic	1	1	1	Negative Genetic
WBP1	YEL002C	Beta subunit of the oligosaccharyl transferase glycoprotein complex	genetic	1	1	1	Positive Genetic
YGR122W	YGR122W	Protein that may be involved in pH regulation	genetic	1	1	1	Positive Genetic
VPS29	YHR012W	Subunit of the membrane-associated retromer complex	genetic	1	1	1	Positive Genetic
URM1	YIL008W	Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs	genetic	1	1	1	Positive Genetic
YJR011C	YJR011C	Putative protein of unknown function	genetic	1	1	1	Positive Genetic
VPS28	YPL065W	Component of the ESCRT-I complex	genetic	1	1	1	Positive Genetic
YRB1	YDR002W	Ran GTPase binding protein	genetic	1	1	1	Negative Genetic
YIP1	YGR172C	Integral membrane protein	genetic	1	1	1	Negative Genetic
ZPR1	YGR211W	Essential protein with two zinc fingers	genetic	1	1	1	Negative Genetic
VTI1	YMR197C	Protein involved in cis-Golgi membrane traffic	genetic	1	1	1	Negative Genetic
WRS1	YOL097C	Cytoplasmic tryptophanyl-tRNA synthetase	genetic	1	1	1	Negative Genetic
YSY6	YBR162W-A	Protein of unknown function	genetic	1	1	1	Negative Genetic
YBR284W	YBR284W	Putative metallo-dependent hydrolase superfamily protein	genetic	1	1	1	Negative Genetic
ZTA1	YBR046C	NADPH-dependent quinone reductase	genetic	1	1	1	Negative Genetic
YMC2	YBR104W	Putative mitochondrial inner membrane transporter	genetic	1	1	1	Negative Genetic
YDL012C	YDL012C	Tail-anchored plasma membrane protein with a conserved CYSTM module	genetic	1	1	1	Negative Genetic
VAM6	YDL077C	Guanine nucleotide exchange factor for the GTPase Gtr1p	genetic	1	1	1	Negative Genetic
URH1	YDR400W	Uridine nucleosidase (uridine-cytidine N-ribohydrolase)	genetic	1	1	1	Negative Genetic
YFR035C	YFR035C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YGL108C	YGL108C	Protein of unknown function, predicted to be palmitoylated	genetic	1	1	1	Negative Genetic
VID30	YGL227W	Central component of GID Complex, involved in FBPase degradation	genetic	1	1	1	Negative Genetic
YGL235W	YGL235W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YGR127W	YGR127W	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YGR161W-C	YGR161W-C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YGR237C	YGR237C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YGR266W	YGR266W	Protein of unknown function	genetic	1	1	1	Negative Genetic
YHR213W	YHR213W	Pseudogenic fragment with similarity to flocculins	genetic	1	1	1	Negative Genetic
YJL163C	YJL163C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YJR084W	YJR084W	Protein that forms a complex with Thp3p	genetic	1	1	1	Negative Genetic
YSR3	YKR053C	Dihydrosphingosine 1-phosphate phosphatase	genetic	1	1	1	Negative Genetic
YLR046C	YLR046C	Putative membrane protein	genetic	1	1	1	Negative Genetic
ZRT2	YLR130C	Low-affinity zinc transporter of the plasma membrane	genetic	1	1	1	Negative Genetic
YLR152C	YLR152C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
YLR156C-A	YLR156C-A	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
VIP1	YLR410W	Bifunctional inositol pyrophosphate kinase and phosphatase	genetic	1	1	1	Negative Genetic
YMR209C	YMR209C	Putative S-adenosylmethionine-dependent methyltransferase	genetic	1	1	1	Negative Genetic
WSC2	YNL283C	Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway	genetic	1	1	1	Negative Genetic
YOR008C-A	YOR008C-A	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
VPH1	YOR270C	Subunit a of the vacuolar-ATPase V0 domain	genetic	1	1	1	Negative Genetic
VPS4	YPR173C	AAA-ATPase involved in multivesicular body (MVB) protein sorting	genetic	1	1	1	Synthetic Lethality
YPK1	YKL126W	S/T protein kinase	genetic	1	1	1	Phenotypic Enhancement
PUF4	YGL014W	Member of the PUF protein family	genetic	1	1	1	Negative Genetic
SEM1	YDR363W-A	19S proteasome regulatory particle lid subcomplex component	genetic	1	1	1	Negative Genetic
RAD30	YDR419W	DNA polymerase eta	genetic	1	1	1	Negative Genetic
HTD2	YHR067W	Mitochondrial 3-hydroxyacyl-thioester dehydratase	genetic	1	1	1	Negative Genetic
ISD11	YER048W-A	Cysteine desulfurase (Nfs1p) activator	genetic	1	1	1	Positive Genetic
MTC1	YJL123C	Protein of unknown function that may interact with ribosomes	genetic	1	1	1	Negative Genetic
UBP3	YER151C	Ubiquitin-specific protease that cleaves Ub-protein fusions	genetic	1	1	1	Negative Genetic
UBP2	YOR124C	Ubiquitin-specific protease	genetic	1	1	1	Negative Genetic
PMR1	YGL167C	High affinity Ca2+/Mn2+ P-type ATPase	genetic	1	1	1	Negative Genetic
NEL1	YHR035W	Activator of Sar1p GTPase activity	genetic	1	1	1	Negative Genetic
TFG2	YGR005C	TFIIF (Transcription Factor II) middle subunit	genetic	1	1	1	Negative Genetic
MSS1	YMR023C	Mitochondrial protein	genetic	1	1	1	Negative Genetic
PSD2	YGR170W	Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes	genetic	1	1	1	Negative Genetic
CAB4	YGR277C	Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC)	genetic	1	1	1	Negative Genetic
OCA4	YCR095C	Cytoplasmic protein required for replication of Brome mosaic virus	genetic	1	1	1	Positive Genetic
MSC7	YHR039C	Protein of unknown function	genetic	1	1	1	Negative Genetic
ORC4	YPR162C	Subunit of the origin recognition complex (ORC)	genetic	1	1	1	Negative Genetic
PPN1	YDR452W	Dual endo- and exopolyphosphatase with a role in phosphate metabolism	genetic	1	1	1	Negative Genetic
SNT2	YGL131C	Subunit of Snt2C complex, RING finger ubiquitin ligase (E3)	genetic	1	1	1	Positive Genetic
ETR1	YBR026C	2-enoyl thioester reductase	genetic	1	1	1	Negative Genetic
GCD14	YJL125C	Subunit of tRNA (1-methyladenosine) methyltransferase	genetic	1	1	1	Negative Genetic
RPL37A	YLR185W	Ribosomal 60S subunit protein L37A	genetic	1	1	1	Negative Genetic
CWP2	YKL096W-A	Covalently linked cell wall mannoprotein	genetic	1	1	1	Negative Genetic
RAD27	YKL113C	5' to 3' exonuclease, 5' flap endonuclease	genetic	1	1	1	Synthetic Lethality
ELF1	YKL160W	Transcription elongation factor with a conserved zinc finger domain	genetic	1	1	1	Positive Genetic
MGR1	YCL044C	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	genetic	1	1	1	Negative Genetic
PKR1	YMR123W	V-ATPase assembly factor	genetic	1	1	1	Positive Genetic
ROT1	YMR200W	Molecular chaperone involved in protein folding in ER	genetic	1	1	1	Positive Genetic
ADE12	YNL220W	Adenylosuccinate synthase	genetic	1	1	1	Negative Genetic
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	genetic	1	1	1	Negative Genetic
RIM21	YNL294C	pH sensor molecule, component of the RIM101 pathway	genetic	1	1	1	Positive Genetic
LIP5	YOR196C	Protein involved in biosynthesis of the coenzyme lipoic acid	genetic	1	1	1	Negative Genetic
NPT1	YOR209C	Nicotinate phosphoribosyltransferase	genetic	1	1	1	Negative Genetic
ISM1	YPL040C	Mitochondrial isoleucyl-tRNA synthetase	genetic	1	1	1	Negative Genetic
RMA1	YKL132C	Putative dihydrofolate synthetase	genetic	1	1	1	Negative Genetic
MUB1	YMR100W	MYND domain-containing protein	genetic	1	1	1	Positive Genetic
TYS1	YGR185C	Cytoplasmic tyrosyl-tRNA synthetase	genetic	1	1	1	Negative Genetic
OGG1	YML060W	Nuclear and mitochondrial glycosylase/lyase	genetic	1	1	1	Negative Genetic
PHB2	YGR231C	Subunit of the prohibitin complex (Phb1p-Phb2p)	genetic	1	1	1	Negative Genetic
SEH1	YGL100W	Subunit of the Nup84 nuclear pore and SEACAT subcomplexes	genetic	1	1	1	Positive Genetic
RPL4B	YDR012W	Ribosomal 60S subunit protein L4B	genetic	1	1	1	Negative Genetic
MRPL27	YBR282W	Mitochondrial ribosomal protein of the large subunit	genetic	1	1	1	Negative Genetic
UME1	YPL139C	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	1	1	1	Affinity Capture-MS
IDI1	YPL117C	Isopentenyl diphosphate:dimethylallyl diphosphate isomerase	genetic	1	1	1	Negative Genetic
ARO2	YGL148W	Bifunctional chorismate synthase and flavin reductase	genetic	1	1	1	Negative Genetic
AIM29	YKR074W	Protein of unknown function	genetic	1	1	1	Negative Genetic
DEG1	YFL001W	tRNA:pseudouridine synthase	genetic	1	1	1	Negative Genetic
AGE2	YIL044C	ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector	genetic	1	1	1	Positive Genetic
MSN4	YKL062W	Stress-responsive transcriptional activator	genetic	1	1	1	Phenotypic Suppression
PTK2	YJR059W	Serine/threonine protein kinase	physical	1	1	1	Biochemical Activity
PTK2	YJR059W	Serine/threonine protein kinase	genetic	1	1	1	Negative Genetic
ORM1	YGR038W	Protein that mediates sphingolipid homeostasis	genetic	1	1	1	Negative Genetic
MGR3	YMR115W	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	genetic	1	1	1	Negative Genetic
GUP1	YGL084C	Plasma membrane protein involved in remodeling GPI anchors	genetic	1	1	1	Negative Genetic
RCM1	YNL022C	rRNA m5C methyltransferase	genetic	1	1	1	Negative Genetic
SCH9	YHR205W	AGC family protein kinase	genetic	1	1	1	Negative Genetic
SUB1	YMR039C	Transcriptional regulator	genetic	1	1	1	Negative Genetic
TOS3	YGL179C	Protein kinase	genetic	1	1	1	Positive Genetic
THP1	YOL072W	Nuclear pore-associated protein	genetic	1	1	1	Negative Genetic
TRP1	YDR007W	Phosphoribosylanthranilate isomerase	genetic	1	1	1	Negative Genetic
SLM5	YCR024C	Mitochondrial asparaginyl-tRNA synthetase	genetic	1	1	1	Negative Genetic
EOS1	YNL080C	Protein involved in N-glycosylation	genetic	1	1	1	Positive Genetic
PKH3	YDR466W	Protein kinase with similarity to mammalian PDK1 and yeast Pkh1p/Phk2p	genetic	1	1	1	Positive Genetic
MDM38	YOL027C	Membrane-associated mitochondrial ribosome receptor	genetic	1	1	1	Negative Genetic
SGO1	YOR073W	Component of the spindle checkpoint	genetic	1	1	1	Negative Genetic
MNN2	YBR015C	Alpha-1,2-mannosyltransferase	genetic	1	1	1	Negative Genetic
TOM70	YNL121C	Component of the TOM (translocase of outer membrane) complex	genetic	1	1	1	Negative Genetic
CDC50	YCR094W	Endosomal protein that interacts with phospholipid flippase Drs2p	genetic	1	1	1	Positive Genetic
UBX2	YML013W	Bridging factor involved in ER-associated protein degradation (ERAD)	genetic	1	1	1	Negative Genetic
CYC2	YOR037W	Mitochondrial peripheral inner membrane protein	genetic	1	1	1	Negative Genetic
RBA50	YDR527W	Protein involved in transcription	genetic	1	1	1	Negative Genetic
CHS2	YBR038W	Chitin synthase II	genetic	1	1	1	Positive Genetic
RCR2	YDR003W	Vacuolar ubiquitin ligase-substrate adaptor	genetic	1	1	1	Negative Genetic
NTG2	YOL043C	DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase	genetic	1	1	1	Negative Genetic
NPR1	YNL183C	Protein kinase	genetic	1	1	1	Negative Genetic
PDR3	YBL005W	Transcriptional activator of the pleiotropic drug resistance network	genetic	1	1	1	Phenotypic Enhancement
NCB2	YDR397C	Subunit of a heterodimeric NC2 transcription regulator complex	genetic	1	1	1	Negative Genetic
TIM54	YJL054W	Component of the mitochondrial TIM22 complex	genetic	1	1	1	Negative Genetic
SHE4	YOR035C	Protein containing a UCS (UNC-45/CRO1/SHE4) domain	genetic	1	1	1	Positive Genetic
SAD1	YFR005C	Conserved zinc-finger domain protein involved in pre-mRNA splicing	genetic	1	1	1	Negative Genetic
ILM1	YJR118C	Protein of unknown function	genetic	1	1	1	Positive Genetic
RTC1	YOL138C	Subunit of SEACAT, a subcomplex of the SEA complex	genetic	1	1	1	Negative Genetic
MDM32	YOR147W	Mitochondrial inner membrane protein with similarity to Mdm31p	genetic	1	1	1	Positive Genetic
CEM1	YER061C	Mitochondrial beta-keto-acyl synthase	genetic	1	1	1	Negative Genetic
DYN3	YMR299C	Dynein light intermediate chain (LIC)	genetic	1	1	1	Negative Genetic
GPI13	YLL031C	ER membrane localized phosphoryltransferase	genetic	1	1	1	Negative Genetic
ARO7	YPR060C	Chorismate mutase	genetic	1	1	1	Negative Genetic
TYR1	YBR166C	Prephenate dehydrogenase involved in tyrosine biosynthesis	genetic	1	1	1	Negative Genetic
PHS1	YJL097W	Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane	genetic	1	1	1	Negative Genetic
RPE1	YJL121C	D-ribulose-5-phosphate 3-epimerase	genetic	1	1	1	Negative Genetic
GPI14	YJR013W	Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I	genetic	1	1	1	Negative Genetic
ISC1	YER019W	Inositol phosphosphingolipid phospholipase C	genetic	1	1	1	Negative Genetic
HAL9	YOL089C	Putative transcription factor containing a zinc finger	genetic	1	1	1	Positive Genetic
EDC1	YGL222C	RNA-binding protein that activates mRNA decapping directly	genetic	1	1	1	Negative Genetic
GPI18	YBR004C	Functional ortholog of human PIG-V	genetic	1	1	1	Negative Genetic
FCY22	YER060W-A	Putative purine-cytosine permease	genetic	1	1	1	Negative Genetic
EMI1	YDR512C	Non-essential protein of unknown function	genetic	1	1	1	Negative Genetic
BSC4	YNL269W	Protein of unknown function	genetic	1	1	1	Negative Genetic
TRS65	YGR166W	Component of transport protein particle (TRAPP) complex II	genetic	1	1	1	Positive Genetic
OPI3	YJR073C	Methylene-fatty-acyl-phospholipid synthase	genetic	1	1	1	Negative Genetic
TOS6	YNL300W	Glycosylphosphatidylinositol-dependent cell wall protein	genetic	1	1	1	Negative Genetic
PFD1	YJL179W	Subunit of heterohexameric prefoldin	genetic	1	1	1	Synthetic Lethality
RPH1	YER169W	JmjC domain-containing histone demethylase	genetic	1	1	1	Positive Genetic
MIC60	YKR016W	Component of the MICOS complex	genetic	1	1	1	Negative Genetic
RPL33A	YPL143W	Ribosomal 60S subunit protein L33A	genetic	1	1	1	Negative Genetic
MTC3	YGL226W	Protein of unknown function	genetic	1	1	1	Negative Genetic
NCE103	YNL036W	Carbonic anhydrase	genetic	1	1	1	Negative Genetic
NBL1	YHR199C-A	Subunit of the conserved chromosomal passenger complex (CPC)	genetic	1	1	1	Negative Genetic
FMC1	YIL098C	Mitochondrial matrix protein	genetic	1	1	1	Positive Genetic
CRD1	YDL142C	Cardiolipin synthase	genetic	1	1	1	Negative Genetic
MAL31	YBR298C	Maltose permease	genetic	1	1	1	Negative Genetic
IRC20	YLR247C	E3 ubiquitin ligase and putative helicase	genetic	1	1	1	Negative Genetic
MUM3	YOR298W	Protein of unknown function involved in outer spore wall organization	genetic	1	1	1	Negative Genetic
KEI1	YDR367W	Component of inositol phosphorylceramide (IPC) synthase	genetic	1	1	1	Negative Genetic
IMA2	YOL157C	Isomaltase (alpha-1,6-glucosidase/alpha-methylglucosidase)	genetic	1	1	1	Negative Genetic
LIP2	YLR239C	Lipoyl ligase	genetic	1	1	1	Negative Genetic
ALG11	YNL048W	Alpha-1,2-mannosyltransferase	genetic	1	1	1	Negative Genetic
NHX1	YDR456W	Na+/H+ and K+/H+ exchanger	genetic	1	1	1	Negative Genetic
ALK2	YBL009W	Atypical protein kinase	genetic	1	1	1	Negative Genetic
PKP1	YIL042C	Mitochondrial protein kinase	genetic	1	1	1	Negative Genetic
TSC11	YER093C	Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p)	genetic	1	1	1	Positive Genetic
EMC2	YJR088C	Member of conserved ER transmembrane complex	genetic	1	1	1	Negative Genetic
RRG9	YNL213C	Protein of unknown function	genetic	1	1	1	Negative Genetic
PDR16	YNL231C	Phosphatidylinositol transfer protein (PITP)	genetic	1	1	1	Negative Genetic
RTC2	YBR147W	Putative vacuolar membrane transporter for cationic amino acids	genetic	1	1	1	Negative Genetic
SNG1	YGR197C	Protein involved in resistance to nitrosoguanidine and 6-azauracil	genetic	1	1	1	Negative Genetic
SER2	YGR208W	Phosphoserine phosphatase of the phosphoglycerate pathway	genetic	1	1	1	Negative Genetic
NAR1	YNL240C	Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery	genetic	1	1	1	Positive Genetic
PUT1	YLR142W	Proline oxidase	genetic	1	1	1	Negative Genetic
PUL4	YNR063W	Putative zinc-cluster transcription factor	genetic	1	1	1	Negative Genetic
PHO3	YBR092C	Constitutively expressed acid phosphatase similar to Pho5p	genetic	1	1	1	Positive Genetic
LST4	YKL176C	Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p	genetic	1	1	1	Negative Genetic
UBC13	YDR092W	E2 ubiquitin-conjugating enzyme	genetic	1	1	1	Positive Genetic
GPI11	YDR302W	ER membrane protein involved in a late step of GPI anchor assembly	genetic	1	1	1	Negative Genetic
QRI7	YDL104C	Protein involved in threonylcarbamoyl adenosine biosynthesis	genetic	1	1	1	Negative Genetic
ALP1	YNL270C	Arginine transporter	genetic	1	1	1	Negative Genetic
PRM15	YMR278W	Phosphoribomutase	genetic	1	1	1	Negative Genetic
MRX11	YPL041C	Protein that associates with mitochondrial ribosome	genetic	1	1	1	Negative Genetic
ODC2	YOR222W	Mitochondrial inner membrane transporter	genetic	1	1	1	Negative Genetic
HEM4	YOR278W	Uroporphyrinogen III synthase	genetic	1	1	1	Negative Genetic
PET20	YPL159C	Mitochondrial protein	genetic	1	1	1	Negative Genetic
THR4	YCR053W	Threonine synthase	genetic	1	1	1	Positive Genetic
TSC10	YBR265W	3-ketosphinganine reductase	genetic	1	1	1	Negative Genetic
SPF1	YEL031W	P-type ATPase, ion transporter of the ER membrane	genetic	1	1	1	Negative Genetic
FMT1	YBL013W	Methionyl-tRNA formyltransferase	genetic	1	1	1	Negative Genetic
HXT13	YEL069C	Putative transmembrane polyol transporter	genetic	1	1	1	Negative Genetic
BUD25	YER014C-A	Protein involved in bud-site selection	genetic	1	1	1	Negative Genetic
TGS1	YPL157W	Trimethyl guanosine synthase, conserved nucleolar methyl transferase	genetic	1	1	1	Negative Genetic
ADF1	YCL058W-A	Transcriptional repressor encoded by the FYV5 antisense strand	genetic	1	1	1	Negative Genetic
TMH18	YPR098C	Mitochondrial protein of unknown function	genetic	1	1	1	Negative Genetic
TSC3	YBR058C-A	Protein that stimulates the activity of serine palmitoyltransferase	genetic	1	1	1	Positive Genetic
MTC6	YHR151C	Protein of unknown function	genetic	1	1	1	Positive Genetic
TOS2	YGR221C	Protein involved in localization of Cdc24p to the site of bud growth	genetic	1	1	1	Negative Genetic
PAU10	YDR542W	Protein of unknown function	genetic	1	1	1	Negative Genetic
PAU15	YIR041W	Protein of unknown function	genetic	1	1	1	Negative Genetic
SUT2	YPR009W	Zn2Cys6 family transcription factor	genetic	1	1	1	Negative Genetic
SPL2	YHR136C	Protein with similarity to cyclin-dependent kinase inhibitors	genetic	1	1	1	Negative Genetic