GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
SSD1	YDR293C	Translational repressor	genetic	6	3	5	Phenotypic Enhancement, Synthetic Lethality, Synthetic Lethality, Synthetic Growth Defect, Synthetic Growth Defect, Phenotypic Enhancement
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	genetic	5	3	4	Synthetic Lethality, Dosage Rescue, Synthetic Growth Defect, Synthetic Growth Defect, Synthetic Growth Defect
CAF20	YOR276W	Phosphoprotein of the mRNA cap-binding complex	physical	5	2	4	Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
POP2	YNR052C	Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation	physical	4	3	4	Affinity Capture-Western, PCA, Affinity Capture-RNA, Affinity Capture-RNA
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	physical	4	2	4	PCA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PKC1	YBL105C	Protein serine/threonine kinase	genetic	4	2	4	Dosage Rescue, Dosage Rescue, Dosage Rescue, Negative Genetic
POP2	YNR052C	Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation	genetic	4	2	3	Dosage Rescue, Synthetic Growth Defect, Dosage Rescue, Synthetic Growth Defect
SST2	YLR452C	GTPase-activating protein for Gpa1p	physical	4	2	2	Affinity Capture-Western, Two-hybrid, Two-hybrid, Two-hybrid
CAF40	YNL288W	Component of the CCR4-NOT transcriptional complex	physical	3	2	3	PCA, Affinity Capture-RNA, Affinity Capture-RNA
LSM4	YER112W	Lsm (Like Sm) protein	physical	3	2	3	PCA, Affinity Capture-RNA, Affinity Capture-RNA
WHI3	YNL197C	RNA binding protein that modulates mRNA stability	physical	3	2	3	Protein-RNA, Affinity Capture-RNA, Affinity Capture-RNA
VTS1	YOR359W	Flap-structured DNA-binding and RNA-binding protein	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HO	YDL227C	Site-specific endonuclease	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
BRR1	YPR057W	snRNP protein component of spliceosomal snRNPs	genetic	3	3	2	Synthetic Lethality, Synthetic Growth Defect, Negative Genetic
CDC28	YBR160W	Cyclin-dependent kinase (CDK) catalytic subunit	physical	3	2	1	Affinity Capture-Western, Two-hybrid, Two-hybrid
FUS3	YBL016W	Mitogen-activated serine/threonine protein kinase involved in mating	physical	3	2	1	Affinity Capture-Western, Two-hybrid, Two-hybrid
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	2	2	2	Affinity Capture-Western, Affinity Capture-RNA
CDC28	YBR160W	Cyclin-dependent kinase (CDK) catalytic subunit	genetic	2	2	2	Synthetic Growth Defect, Negative Genetic
JSN1	YJR091C	Member of the Puf family of RNA-binding proteins	genetic	2	2	2	Phenotypic Enhancement, Phenotypic Suppression
TIF1	YKR059W	Translation initiation factor eIF4A	physical	2	2	2	Protein-RNA, Affinity Capture-RNA
SSD1	YDR293C	Translational repressor	physical	2	2	2	PCA, Affinity Capture-RNA
PUB1	YNL016W	Poly (A)+ RNA-binding protein	physical	2	2	2	PCA, Affinity Capture-MS
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	2	2	2	Co-purification, Affinity Capture-RNA
RVB2	YPL235W	ATP-dependent DNA helicase, also known as reptin	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
PUF4	YGL014W	Member of the PUF protein family	genetic	2	2	2	Synthetic Growth Defect, Phenotypic Enhancement
ROM2	YLR371W	Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p	genetic	2	2	2	Negative Genetic, Synthetic Growth Defect
CTR9	YOL145C	Component of the Paf1p complex involved in transcription elongation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AME1	YBR211C	Essential kinetochore protein associated with microtubules and SPBs	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DSN1	YIR010W	Essential component of the outer kinetochore MIND complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LEO1	YOR123C	Component of the Paf1 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ESF1	YDR365C	Nucleolar protein involved in pre-rRNA processing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EAF5	YEL018W	Non-essential subunit of the NuA4 acetyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GON7	YJL184W	Component of the EKC/KEOPS protein complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AMN1	YBR158W	Modulator of cell separation and mitotic exit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BRE1	YDL074C	E3 ubiquitin ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LOC1	YFR001W	Nucleolar protein involved in the asymmetric localization of ASH1 mRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GAR1	YHR089C	Protein component of the H/ACA snoRNP pseudouridylase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CFT1	YDR301W	RNA-binding subunit of the mRNA cleavage and polyadenylation factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GIR2	YDR152W	Highly-acidic RWD domain-containing cytoplasmic protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HGH1	YGR187C	Chaperone protein for translation factor eEF2	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARD1	YHR013C	Subunit of protein N-terminal acetyltransferase NatA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BDF1	YLR399C	BET family transcriptional regulator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BOI2	YER114C	Protein involved in polar growth	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DPB3	YBR278W	Third-largest subunit of DNA polymerase II (DNA polymerase epsilon)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EMG1	YLR186W	Methyltransferase for rRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ENP1	YBR247C	Protein associated with U3 and U14 snoRNAs	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BDF2	YDL070W	Protein involved in transcription initiation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HHF1	YBR009C	Histone H4	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	genetic	2	1	2	Synthetic Growth Defect, Synthetic Growth Defect
HSH155	YMR288W	U2-snRNP associated splicing factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HHF2	YNL030W	Histone H4	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HTB2	YBL002W	Histone H2B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
END3	YNL084C	EH domain-containing protein involved in endocytosis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MED6	YHR058C	Subunit of the RNA polymerase II mediator complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HTZ1	YOL012C	Histone variant H2AZ	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ITC1	YGL133W	Subunit of ATP-dependent Isw2p-Itc1p chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HMO1	YDR174W	Chromatin associated high mobility group (HMG) family member	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HTA1	YDR225W	Histone H2A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUD21	YOR078W	Component of small ribosomal subunit (SSU) processosome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DEP1	YAL013W	Component of the Rpd3L histone deacetylase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ABF2	YMR072W	Mitochondrial DNA-binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HFI1	YPL254W	Adaptor protein required for structural integrity of the SAGA complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MCM2	YBL023C	Protein involved in DNA replication	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DIA4	YHR011W	Probable mitochondrial seryl-tRNA synthetase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GAS1	YMR307W	Beta-1,3-glucanosyltransferase required for cell wall assembly	genetic	2	1	2	Negative Genetic, Negative Genetic
ISA2	YPR067W	Protein required for maturation of mitochondrial [4Fe-4S] proteins	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HTB1	YDR224C	Histone H2B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GSF2	YML048W	Endoplasmic reticulum (ER) localized integral membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FKH1	YIL131C	Forkhead family transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BOL2	YGL220W	Cytosolic protein involved in repression of iron regulon transcription	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
APT1	YML022W	Adenine phosphoribosyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ELM1	YKL048C	Serine/threonine protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ART10	YLR392C	Protein of unknown function that contains 2 PY motifs	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DSS4	YPR017C	Guanine nucleotide dissociation stimulator for Sec4p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CIN8	YEL061C	Bipolar kinesin motor protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HHT1	YBR010W	Histone H3	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HHO1	YPL127C	Histone H1, linker histone with roles in meiosis and sporulation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUD9	YGR041W	Protein involved in bud-site selection	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HAP3	YBL021C	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MCM4	YPR019W	Essential helicase component of heterohexameric MCM2-7 complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CIA1	YDR267C	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDH1	YGL003C	Activator of anaphase-promoting complex/cyclosome (APC/C)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HFL1	YKR051W	Vacuole membrane protein that interacts with Atg8p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CHZ1	YER030W	Histone chaperone for Htz1p/H2A-H2B dimer	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DAD1	YDR016C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CSM2	YIL132C	Subunit of the Shu complex (aka PCSS complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BAS1	YKR099W	Myb-related transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ACF4	YJR083C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MDE1	YJR024C	5'-methylthioribulose-1-phosphate dehydratase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BLI1	YKL061W	Subunit of the BLOC-1 complex involved in endosomal maturation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CDC31	YOR257W	Calcium-binding component of the spindle pole body (SPB) half-bridge	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DAL81	YIR023W	Positive regulator of genes in multiple nitrogen degradation pathways	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ARP5	YNL059C	Nuclear actin-related protein involved in chromatin remodeling	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IES3	YLR052W	Subunit of the INO80 chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUB1	YGR188C	Protein kinase involved in the cell cycle checkpoint into anaphase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
COX18	YGR062C	Protein required for membrane insertion of C-terminus of Cox2p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IOC4	YMR044W	Member of a complex (Isw1b) with Isw1p and Ioc2p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KAR3	YPR141C	Minus-end-directed microtubule motor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MCM3	YEL032W	Protein involved in DNA replication	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CNM67	YNL225C	Component of the spindle pole body outer plaque	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BBP1	YPL255W	Protein required for the spindle pole body (SPB) duplication	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL22B	YFL034C-A	Ribosomal 60S subunit protein L22A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL28	YGL103W	Ribosomal 60S subunit protein L28	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL39	YJL189W	Ribosomal 60S subunit protein L39	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL22A	YLR061W	Ribosomal 60S subunit protein L22A	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTR2	YEL040W	Chitin transglycosylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRS2	YJL092W	DNA helicase and DNA-dependent ATPase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SGO1	YOR073W	Component of the spindle checkpoint	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PSA1	YDL055C	GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRP68	YPL243W	Core component of the signal recognition particle (SRP) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRM112	YNR046W	Protein involved in methylation of tRNA, rRNA, and translation factors	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MSB2	YGR014W	Mucin family member involved in various signaling pathways	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOG1	YPL093W	Putative GTPase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPA49	YNL248C	RNA polymerase I subunit A49	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRP102	YKL154W	Signal recognition particle (SRP) receptor beta subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MSH1	YHR120W	DNA-binding protein of the mitochondria	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTR4	YEL038W	Protein with sequence similarity to acireductone synthases	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MUD2	YKL074C	Protein involved in early pre-mRNA splicing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRB7	YDR308C	Subunit of the RNA polymerase II mediator complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRM5	YHR070W	tRNA(m(1)G37)methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YHM2	YMR241W	Citrate and oxoglutarate carrier protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOC3	YLR002C	Subunit of a nuclear complex with Noc2p and pre-replicative complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP15	YNL110C	Constituent of 66S pre-ribosomal particles	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SSS1	YDR086C	Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP1	YDL014W	Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAS2	YNL098C	GTP-binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL27B	YDR471W	Ribosomal 60S subunit protein L27B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UAF30	YOR295W	Subunit of UAF (upstream activation factor) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PPN2	YNL217W	Zn2+-dependent endopolyphosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PAM16	YJL104W	Subunit of the import motor (PAM complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NRK1	YNL129W	Nicotinamide riboside kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSA3	YLR221C	Protein with a likely role in ribosomal maturation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PUF6	YDR496C	Pumilio-homology domain protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP17	YDR412W	5' exoribonuclease required for 5' end processing of pre-60S rRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TFC7	YOR110W	RNA pol III transcription initiation factor complex (TFIIIC) subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SSK2	YNR031C	MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NPR3	YHL023C	Subunit of the Iml1p/SEACIT complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STR2	YJR130C	Cystathionine gamma-synthase, converts cysteine into cystathionine	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRM1	YDR120C	tRNA methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ORC3	YLL004W	Subunit of the origin recognition complex (ORC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PKH3	YDR466W	Protein kinase with similarity to mammalian PDK1 and yeast Pkh1p/Phk2p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL21B	YPL079W	Ribosomal 60S subunit protein L21B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RFS1	YBR052C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRM1	YGL097W	Nucleotide exchange factor for Gsp1p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOS4	YLR183C	Putative transcription factor, contains Forkhead Associated domain	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PIF1	YML061C	DNA helicase, potent G-quadruplex DNA binder/unwinder	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP6	YDL213C	rRNA-binding protein required for 40S ribosomal subunit biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRM8	YDL201W	Catalytic subunit of a tRNA methyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SNL1	YIL016W	Ribosome-associated protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAT4	YCR008W	Ser/Thr protein kinase involved in salt tolerance, nutrient response	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SKI3	YPR189W	Ski complex component and TPR protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSC58	YLR033W	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRP10	YDL045W-A	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDL157C	YDL157C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRM7	YBR061C	2'-O-ribose methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP5	YDR398W	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP45	YDR280W	Exosome non-catalytic core component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDL180W	YDL180W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YNG1	YOR064C	Subunit of the NuA3 histone acetyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRP13	YGR084C	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPT7	YBR081C	Subunit of the SAGA transcriptional regulatory complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRY3	YJL078C	GPI-anchored cell wall protein involved in export of sterols	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RLP24	YLR009W	Essential protein required for ribosomal large subunit biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RNH201	YNL072W	Ribonuclease H2 catalytic subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YPP1	YGR198W	Cargo-transport protein involved in endocytosis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRS1	YOR294W	Essential protein that binds ribosomal protein L11	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPF2	YKR081C	Essential protein involved in rRNA maturation and ribosomal assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIP20	YGL145W	Peripheral membrane protein required for COPI vesicle fusion to the ER	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YKT6	YKL196C	Vesicle membrane protein (v-SNARE) with acyltransferase activity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOS7	YOL019W	Protein involved in secretion and cell wall organization	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TIM21	YGR033C	Nonessential component of the TIM23 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPS16	YPL013C	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPC19	YNL113W	RNA polymerase subunit AC19	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YRA2	YKL214C	Member of the REF (RNA and export factor binding proteins) family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
THO1	YER063W	Conserved nuclear RNA-binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRN6	YBL014C	Component of the core factor (CF) rDNA transcription factor complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NPC2	YDL046W	Sterol transport protein and functional homolog of human NPC2/He1	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP14	YML093W	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TAF5	YBR198C	Subunit (90 kDa) of TFIID and SAGA complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRP43	YCR035C	Exosome non-catalytic core component	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAS1	YOR101W	GTPase involved in G-protein signaling in adenylate cyclase activation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SMD1	YGR074W	Core Sm protein Sm D1	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YOX1	YML027W	Homeobox transcriptional repressor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGR017W	YGR017W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOR1	YJR066W	PIK-related protein kinase and rapamycin target	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWE1	YJL187C	Protein kinase that regulates the G2/M transition	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPH1	YER169W	JmjC domain-containing histone demethylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SNU13	YEL026W	RNA binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NAB2	YGL122C	Nuclear polyadenylated RNA-binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YDR262W	YDR262W	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TFB1	YDR311W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YHR127W	YHR127W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PLB2	YMR006C	Phospholipase B (lysophospholipase) involved in lipid metabolism	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWI3	YJL176C	Subunit of the SWI/SNF chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RXT3	YDL076C	Component of the Rpd3L histone deacetylase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRT4	YKL009W	Protein involved in mRNA turnover and ribosome assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUP100	YKL068W	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP19	YGR251W	Ribosome biogenesis factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAD51	YER095W	Strand exchange protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPC98	YNL126W	Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRK1	YIL095W	Ser/Thr protein kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
THP2	YHR167W	Subunit of the THO and TREX complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
OST2	YOR103C	Epsilon subunit of the oligosaccharyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SKO1	YNL167C	Basic leucine zipper transcription factor of the ATF/CREB family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PUF4	YGL014W	Member of the PUF protein family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SET2	YJL168C	Histone methyltransferase with a role in transcriptional elongation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAR1	YPL218W	ARF family GTPase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SRL1	YOR247W	Mannoprotein that exhibits a tight association with the cell wall	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS21A	YKR057W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RKI1	YOR095C	Ribose-5-phosphate ketol-isomerase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PIS1	YPR113W	Phosphatidylinositol synthase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRT14	YIL127C	Putative protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TYW3	YGL050W	tRNA methyltransferase required for synthesis of wybutosine	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPC17	YJL011C	RNA polymerase III subunit C17	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS28A	YOR167C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPL31B	YLR406C	Ribosomal 60S subunit protein L31B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PDS1	YDR113C	Securin	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRI1	YIR008C	Subunit of DNA primase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP30	YKR060W	Subunit of U3-containing 90S preribosome complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SNC2	YOR327C	Vesicle membrane receptor protein (v-SNARE)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSC4	YKR008W	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TRS20	YBR254C	Core component of transport protein particle (TRAPP) complexes I-III	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RHO3	YIL118W	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PTC2	YER089C	Type 2C protein phosphatase (PP2C)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGR130C	YGR130C	Component of the eisosome with unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS27A	YKL156W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SUR7	YML052W	Plasma membrane protein, component of eisosomes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRPS17	YMR188C	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSM18	YER050C	Mitochondrial ribosomal protein of the small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
OPY1	YBR129C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NOP53	YPL146C	Nucleolar protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SMX3	YPR182W	Core Sm protein Sm F	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS26B	YER131W	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YLR108C	YLR108C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SLX9	YGR081C	Protein required for pre-rRNA processing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRP19	YLL036C	Splicing factor associated with the spliceosome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NFI1	YOR156C	SUMO E3 ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PEX14	YGL153W	Central component of the peroxisomal importomer complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TUS1	YLR425W	Guanine nucleotide exchange factor (GEF) that modulates Rho1p activity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPS29B	YDL061C	Protein component of the small (40S) ribosomal subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SEN34	YAR008W	Subunit of the tRNA splicing endonuclease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UTP23	YOR004W	Component of the small subunit processome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SUT2	YPR009W	Zn2Cys6 family transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PAM18	YLR008C	Subunit of the import motor (PAM complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RGT1	YKL038W	Glucose-responsive transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOS6	YNL300W	Glycosylphosphatidylinositol-dependent cell wall protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPO7	YAL009W	Putative regulatory subunit of Nem1p-Spo7p phosphatase holoenzyme	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGK1	YGL101W	5'-deoxynucleotidase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPB7	YDR404C	RNA polymerase II subunit B16	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STH1	YIL126W	ATPase component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PMP3	YDR276C	Small plasma membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPB8	YOR224C	RNA polymerase subunit ABC14.5	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
UME1	YPL139C	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YKE2	YLR200W	Subunit of the heterohexameric Gim/prefoldin protein complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PAP2	YOL115W	Non-canonical poly(A) polymerase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TBF1	YPL128C	Telobox-containing general regulatory factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ORC2	YBR060C	Subunit of the origin recognition complex (ORC)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPC31	YNL151C	RNA polymerase III subunit C31	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TDA9	YML081W	Transcription factor that regulates acetate production	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SBE2	YDR351W	Protein required for bud growth	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPG3	YDR504C	Protein required for high temperature survival during stationary phase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YGR079W	YGR079W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NUD1	YOR373W	Mitotic exit network (MEN) scaffold protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MTW1	YAL034W-A	Essential component of the MIND kinetochore complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SMB1	YER029C	Core Sm protein Sm B	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPC19	YDR201W	Essential subunit of the Dam1 complex (aka DASH complex)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MZM1	YDR493W	Protein required for assembly of the cytochrome bc(1) complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPL2	YHR136C	Protein with similarity to cyclin-dependent kinase inhibitors	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
REB1	YBR049C	RNA polymerase I enhancer binding protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STE7	YDL159W	Signal transducing MAP kinase kinase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RRN9	YMR270C	Protein involved in promoting high level transcription of rDNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOS1	YBR162C	Covalently-bound cell wall protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RPB9	YGL070C	RNA polymerase II subunit B12.6	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SFH1	YLR321C	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MSN1	YOL116W	Transcriptional activator	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SPT8	YLR055C	Subunit of the SAGA transcriptional regulatory complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SAS3	YBL052C	Histone acetyltransferase catalytic subunit of NuA3 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RSC2	YLR357W	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PPH3	YDR075W	Catalytic subunit of protein phosphatase PP4 complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ZEO1	YOL109W	Peripheral membrane protein of the plasma membrane	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWI6	YLR182W	Transcription cofactor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWR1	YDR334W	Swi2/Snf2-related ATPase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TOA2	YKL058W	TFIIA small subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
TAF1	YGR274C	TFIID subunit, involved in RNA pol II transcription initiation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YHP1	YDR451C	Homeobox transcriptional repressor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
YBL028C	YBL028C	Protein of unknown function that may interact with ribosomes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MRX8	YDR336W	Protein that associates with mitochondrial ribosome	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
RAX2	YLR084C	Protein required for the maintenance of bud site selection	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SWC3	YAL011W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SME1	YOR159C	Core Sm protein Sm E	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PRP45	YAL032C	Protein required for pre-mRNA splicing	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PDP3	YLR455W	Component of the NuA3b histone acetyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
SUN4	YNL066W	Cell wall protein related to glucanases localized in birth scars	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NHP10	YDL002C	Non-essential INO80 chromatin remodeling complex subunit	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PHM6	YDR281C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NHP6A	YPR052C	High-mobility group (HMG) protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MTH1	YDR277C	Negative regulator of the glucose-sensing signal transduction pathway	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PHD1	YKL043W	Transcriptional activator that enhances pseudohyphal growth	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
PET117	YER058W	Assembly factor that couples heme a synthesis to complex IV assembly	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
STM1	YLR150W	Protein required for optimal translation under nutrient stress	genetic	2	1	2	Dosage Rescue, Dosage Rescue
SLG1	YOR008C	Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway	genetic	2	1	2	Dosage Rescue, Dosage Rescue
ABF1	YKL112W	DNA binding protein with possible chromatin-reorganizing activity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MCM7	YBR202W	Component of the Mcm2-7 hexameric helicase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LRG1	YDL240W	GTPase-activating protein (GAP)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LRG1	YDL240W	GTPase-activating protein (GAP)	genetic	2	1	2	Synthetic Rescue, Synthetic Rescue
DOT1	YDR440W	Nucleosomal histone H3-Lys79 methylase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HMT1	YBR034C	Nuclear SAM-dependent mono- and asymmetric methyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MET31	YPL038W	Zinc-finger DNA-binding transcription factor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KAR1	YNL188W	Protein involved in karyogamy and spindle pole body duplication	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HHT2	YNL031C	Histone H3	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MNN11	YJL183W	Subunit of a Golgi mannosyltransferase complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ERV14	YGL054C	COPII-coated vesicle protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AQR1	YNL065W	Plasma membrane transporter of the major facilitator superfamily	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
INN1	YNL152W	Essential protein that associates with contractile actomyosin ring	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KIP1	YBL063W	Kinesin-related motor protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
FUR1	YHR128W	Uracil phosphoribosyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HLR1	YDR528W	Protein involved in regulation of cell wall composition and integrity	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BUD22	YMR014W	Protein required for rRNA maturation and ribosomal subunit biogenesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HEH2	YDR458C	Inner nuclear membrane (INM) protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GPI2	YPL076W	Protein involved in the synthesis of GlcNAc-PI	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BDH1	YAL060W	NAD-dependent (R,R)-butanediol dehydrogenase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASE1	YOR058C	Mitotic spindle midzone-localized microtubule bundling protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BPL1	YDL141W	Biotin:apoprotein ligase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BRL1	YHR036W	Essential nuclear envelope/ER integral membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LYS14	YDR034C	Transcriptional activator involved in regulating lysine biosynthesis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
CYB5	YNL111C	Cytochrome b5	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
BYE1	YKL005C	Negative regulator of transcription elongation	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ELF1	YKL160W	Transcription elongation factor with a conserved zinc finger domain	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
COA4	YLR218C	Twin Cx(9)C protein involved in cytochrome c oxidase organization	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GTT3	YEL017W	Protein of unknown function may be involved in glutathione metabolism	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MIL1	YFL034W	Predicted lipase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LDB7	YBL006C	Component of the RSC chromatin remodeling complex	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIM11	YER093C-A	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
GGC1	YDL198C	Mitochondrial GTP/GDP transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
COA1	YIL157C	Mitochondrial inner membrane protein	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ALG14	YBR070C	Component of UDP-GlcNAc transferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HLJ1	YMR161W	Co-chaperone for Hsp40p	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
HPT1	YDR399W	Dimeric hypoxanthine-guanine phosphoribosyltransferase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
LCB3	YJL134W	Long-chain base-1-phosphate phosphatase	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DAT1	YML113W	DNA binding protein that recognizes oligo(dA).oligo(dT) tracts	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AIM20	YIL158W	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DSD1	YGL196W	D-serine dehydratase (aka D-serine ammonia-lyase)	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
DLT1	YMR126C	Protein of unknown function	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ENB1	YOL158C	Ferric enterobactin transmembrane transporter	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
AGP1	YCL025C	Broad-specificity, low-affinity amino acid permease	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ATX2	YOR079C	Golgi membrane protein involved in manganese homeostasis	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
EMP65	YER140W	Integral membrane protein of the ER	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
KCH1	YJR054W	Potassium transporter that mediates K+ influx	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ESP1	YGR098C	Separase/separin, a caspase-like cysteine protease	genetic	2	2	1	Dosage Rescue, Dosage Growth Defect
CBK1	YNL161W	Serine/threonine protein kinase of the the RAM signaling network	genetic	2	2	1	Phenotypic Suppression, Phenotypic Enhancement
KSS1	YGR040W	Mitogen-activated protein kinase (MAPK)	physical	2	1	1	Two-hybrid, Two-hybrid
STE12	YHR084W	Transcription factor that is activated by a MAPK signaling cascade	regulation	1	1	1	DNA to cDNA expression microarray evidence
TEC1	YBR083W	Transcription factor targeting filamentation genes and Ty1 expression	regulation	1	1	1	DNA to cDNA expression microarray evidence
SWI4	YER111C	DNA binding component of the SBF complex (Swi4p-Swi6p)	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SWI6	YLR182W	Transcription cofactor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC73	YLR418C	Component of the Paf1p complex	physical	1	1	1	Affinity Capture-RNA
CBF5	YLR175W	Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs	physical	1	1	1	Affinity Capture-RNA
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
CKB1	YGL019W	Beta regulatory subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
CKB2	YOR039W	Beta' regulatory subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
GLC7	YER133W	Type 1 S/T protein phosphatase (PP1) catalytic subunit	genetic	1	1	1	Negative Genetic
ARP4	YJL081C	Nuclear actin-related protein involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	physical	1	1	1	Affinity Capture-RNA
BRX1	YOL077C	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
EBP2	YKL172W	Required for 25S rRNA maturation and 60S ribosomal subunit assembly	physical	1	1	1	Affinity Capture-RNA
ERB1	YMR049C	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
HAS1	YMR290C	ATP-dependent RNA helicase	physical	1	1	1	Affinity Capture-RNA
MAK16	YAL025C	Essential nuclear protein	physical	1	1	1	Affinity Capture-RNA
CAB3	YKL088W	Subunit of PPCDC and CoA-SPC complexes involved in CoA biosynthesis	physical	1	1	1	Affinity Capture-RNA
KAP123	YER110C	Karyopherin beta	physical	1	1	1	Affinity Capture-RNA
KRE29	YER038C	Subunit of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
LTO1	YNL260C	Substrate-specific adaptor protein involved in apo-Rli1p maturation	physical	1	1	1	Affinity Capture-RNA
CDC42	YLR229C	Small rho-like GTPase	physical	1	1	1	Affinity Capture-RNA
HAP5	YOR358W	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	physical	1	1	1	Affinity Capture-RNA
KES1	YPL145C	Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger	physical	1	1	1	Affinity Capture-RNA
CIC1	YHR052W	Essential protein that interacts with proteasome components	physical	1	1	1	Affinity Capture-RNA
ARC1	YGL105W	Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases	physical	1	1	1	Affinity Capture-RNA
MES1	YGR264C	Methionyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
GUS1	YGL245W	Glutamyl-tRNA synthetase (GluRS)	physical	1	1	1	Affinity Capture-RNA
FUN12	YAL035W	Translation initiation factor eIF5B	physical	1	1	1	Affinity Capture-RNA
MAK21	YDR060W	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
ALB1	YJL122W	Shuttling pre-60S factor	physical	1	1	1	Affinity Capture-RNA
LSM5	YER146W	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
LSM1	YJL124C	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
LSM1	YJL124C	Lsm (Like Sm) protein	genetic	1	1	1	Phenotypic Enhancement
LSM6	YDR378C	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
LSM6	YDR378C	Lsm (Like Sm) protein	genetic	1	1	1	Negative Genetic
DED1	YOR204W	ATP-dependent DEAD-box RNA helicase with strand-annealing activity	physical	1	1	1	Affinity Capture-RNA
CSL4	YNL232W	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-RNA
DIS3	YOL021C	Exosome core complex catalytic subunit	physical	1	1	1	Affinity Capture-RNA
LRP1	YHR081W	Nuclear exosome-associated nucleic acid binding protein	physical	1	1	1	Affinity Capture-RNA
FMP52	YER004W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CBC2	YPL178W	Small subunit of the heterodimeric cap binding complex with Sto1p	genetic	1	1	1	Negative Genetic
MFT1	YML062C	Subunit of the THO complex	physical	1	1	1	Affinity Capture-RNA
ARP9	YMR033W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	physical	1	1	1	Affinity Capture-RNA
MED4	YOR174W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MED4	YOR174W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
MED7	YOL135C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
ILS1	YBL076C	Cytoplasmic isoleucine-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
ARX1	YDR101C	Nuclear export factor for the ribosomal pre-60S subunit	physical	1	1	1	Affinity Capture-RNA
GCD1	YOR260W	Gamma subunit of the translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-RNA
AAH1	YNL141W	Adenine deaminase (adenine aminohydrolase)	physical	1	1	1	Affinity Capture-RNA
ALA1	YOR335C	Cytoplasmic and mitochondrial alanyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
BCP1	YDR361C	Essential nuclear chaperone for ribosomal protein Rpl23p	physical	1	1	1	Affinity Capture-RNA
CDC39	YCR093W	Subunit of the CCR4-NOT1 core complex	physical	1	1	1	PCA
LSG1	YGL099W	Putative GTPase involved in 60S ribosomal subunit biogenesis	physical	1	1	1	Affinity Capture-RNA
BMS1	YPL217C	GTPase required for ribosomal subunit synthesis and rRNA processing	physical	1	1	1	Affinity Capture-RNA
EFT2	YDR385W	Elongation factor 2 (EF-2), also encoded by EFT1	physical	1	1	1	Affinity Capture-RNA
ASF1	YJL115W	Nucleosome assembly factor	physical	1	1	1	Affinity Capture-RNA
ASF1	YJL115W	Nucleosome assembly factor	genetic	1	1	1	Negative Genetic
BEM1	YBR200W	Protein containing SH3-domains	physical	1	1	1	Affinity Capture-RNA
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	physical	1	1	1	Affinity Capture-RNA
AIM21	YIR003W	Subunit of a complex that associates with actin filaments	physical	1	1	1	Affinity Capture-RNA
ATP11	YNL315C	Molecular chaperone	genetic	1	1	1	Phenotypic Suppression
CDC45	YLR103C	DNA replication initiation factor	physical	1	1	1	Affinity Capture-RNA
CDC55	YGL190C	Regulatory subunit B of protein phosphatase 2A (PP2A)	physical	1	1	1	Affinity Capture-RNA
DBP10	YDL031W	Putative ATP-dependent RNA helicase of the DEAD-box protein family	physical	1	1	1	Affinity Capture-RNA
IPI3	YNL182C	Component of the Rix1 complex and pre-replicative complexes (pre-RCs)	physical	1	1	1	Affinity Capture-RNA
CKS1	YBR135W	Cyclin-dependent protein kinase regulatory subunit and adaptor	physical	1	1	1	Affinity Capture-RNA
CIP1	YPL014W	Cyclin-dependent kinase inhibitor	physical	1	1	1	Affinity Capture-RNA
COX5A	YNL052W	Subunit Va of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
CPR1	YDR155C	Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
CYS4	YGR155W	Cystathionine beta-synthase	physical	1	1	1	Affinity Capture-RNA
ECM1	YAL059W	Pre-ribosomal factor involved in 60S ribosomal protein subunit export	physical	1	1	1	Affinity Capture-RNA
EDE1	YBL047C	Scaffold protein involved in the formation of early endocytic sites	physical	1	1	1	Affinity Capture-RNA
EPL1	YFL024C	Subunit of NuA4, an essential histone H4/H2A acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
ERP1	YAR002C-A	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
FIP1	YJR093C	Subunit of cleavage polyadenylation factor (CPF)	physical	1	1	1	Affinity Capture-RNA
FKS1	YLR342W	Catalytic subunit of 1,3-beta-D-glucan synthase	genetic	1	1	1	Negative Genetic
GCN1	YGL195W	Positive regulator of the Gcn2p kinase activity	physical	1	1	1	Affinity Capture-RNA
CCT4	YDL143W	Subunit of the cytosolic chaperonin Cct ring complex	genetic	1	1	1	Negative Genetic
ERV25	YML012W	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
CTO1	YCR015C	Protein required for cold tolerance	physical	1	1	1	Affinity Capture-RNA
HAP2	YGL237C	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	physical	1	1	1	Affinity Capture-RNA
ECM5	YMR176W	Subunit of the Snt2C complex	physical	1	1	1	Affinity Capture-RNA
AEP2	YMR282C	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
HST1	YOL068C	NAD(+)-dependent histone deacetylase	physical	1	1	1	Affinity Capture-RNA
DPB4	YDR121W	Subunit of DNA pol epsilon and of ISW2 chromatin accessibility complex	physical	1	1	1	Affinity Capture-RNA
IPP1	YBR011C	Cytoplasmic inorganic pyrophosphatase (PPase)	physical	1	1	1	Affinity Capture-RNA
ACK1	YDL203C	Protein that functions in the cell wall integrity pathway	physical	1	1	1	Affinity Capture-RNA
ACK1	YDL203C	Protein that functions in the cell wall integrity pathway	genetic	1	1	1	Negative Genetic
IOC3	YFR013W	Subunit of the Isw1a complex	physical	1	1	1	Affinity Capture-RNA
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	physical	1	1	1	Affinity Capture-RNA
ARB1	YER036C	ATPase of the ATP-binding cassette (ABC) family	physical	1	1	1	Affinity Capture-RNA
KRE33	YNL132W	Acetyltransferase required for biogenesis of small ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
IMP3	YHR148W	Component of the SSU processome	physical	1	1	1	Affinity Capture-RNA
KRR1	YCL059C	Nucleolar protein required for rRNA synthesis and ribosomal assembly	physical	1	1	1	Affinity Capture-RNA
CRM1	YGR218W	Nuclear export factor, exportin	physical	1	1	1	Affinity Capture-MS
LCB2	YDR062W	Component of serine palmitoyltransferase	genetic	1	1	1	Negative Genetic
LSM2	YBL026W	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
DIB1	YPR082C	17-kDa component of the U4/U6aU5 tri-snRNP	physical	1	1	1	Affinity Capture-RNA
LSM7	YNL147W	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
MAK3	YPR051W	Catalytic subunit of the NatC type N-terminal acetyltransferase (NAT)	physical	1	1	1	Affinity Capture-RNA
MAK5	YBR142W	Essential nucleolar protein	physical	1	1	1	Affinity Capture-RNA
INP2	YMR163C	Peroxisome-specific receptor important for peroxisome inheritance	physical	1	1	1	Affinity Capture-RNA
MCD1	YDL003W	Essential alpha-kleisin subunit of the cohesin complex	physical	1	1	1	Affinity Capture-RNA
MCM6	YGL201C	Protein involved in DNA replication	physical	1	1	1	Affinity Capture-RNA
GAL11	YOL051W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MED11	YMR112C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
ADA2	YDR448W	Transcription coactivator	physical	1	1	1	Affinity Capture-RNA
FBA1	YKL060C	Fructose 1,6-bisphosphate aldolase	physical	1	1	1	Affinity Capture-RNA
MOT1	YPL082C	Essential protein involved in regulation of transcription	physical	1	1	1	Affinity Capture-RNA
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	physical	1	1	1	Affinity Capture-RNA
IMG2	YCR071C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
HDA3	YPR179C	Subunit of HDA1 histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
LCD1	YDR499W	Essential protein required for the DNA integrity checkpoint pathways	physical	1	1	1	Affinity Capture-RNA
MPH1	YIR002C	3'-5' DNA helicase involved in error-free bypass of DNA lesions	physical	1	1	1	Affinity Capture-RNA
CMD1	YBR109C	Calmodulin	physical	1	1	1	Affinity Capture-RNA
GIN4	YDR507C	Protein kinase involved in bud growth and assembly of the septin ring	physical	1	1	1	Affinity Capture-RNA
MIS1	YBR084W	Mitochondrial C1-tetrahydrofolate synthase	physical	1	1	1	Affinity Capture-RNA
IES5	YER092W	Non-essential INO80 chromatin remodeling complex subunit	physical	1	1	1	Affinity Capture-RNA
IES1	YFL013C	Subunit of the INO80 chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
GIM3	YNL153C	Subunit of the heterohexameric cochaperone prefoldin complex	genetic	1	1	1	Negative Genetic
GIM5	YML094W	Subunit of the heterohexameric cochaperone prefoldin complex	physical	1	1	1	Affinity Capture-RNA
MGS1	YNL218W	Protein with DNA-dependent ATPase and ssDNA annealing activities	physical	1	1	1	Affinity Capture-RNA
AAP1	YHR047C	Arginine/alanine amino peptidase	physical	1	1	1	Affinity Capture-RNA
HSP82	YPL240C	Hsp90 chaperone	genetic	1	1	1	Negative Genetic
DAM1	YGR113W	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
IMP4	YNL075W	Component of the SSU processome	physical	1	1	1	Affinity Capture-RNA
CPA2	YJR109C	Large subunit of carbamoyl phosphate synthetase	physical	1	1	1	Affinity Capture-RNA
GPM1	YKL152C	Tetrameric phosphoglycerate mutase	physical	1	1	1	Affinity Capture-RNA
GPT2	YKR067W	Glycerol-3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase	physical	1	1	1	Affinity Capture-RNA
MED8	YBR193C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
ADE3	YGR204W	Cytoplasmic trifunctional enzyme	physical	1	1	1	Affinity Capture-RNA
CDC6	YJL194W	Essential ATP-binding protein required for DNA replication	physical	1	1	1	Affinity Capture-RNA
ANP1	YEL036C	Subunit of the alpha-1,6 mannosyltransferase complex	physical	1	1	1	Affinity Capture-RNA
MNN10	YDR245W	Subunit of a Golgi mannosyltransferase complex	physical	1	1	1	Affinity Capture-RNA
KTR3	YBR205W	Putative alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
HOS2	YGL194C	Histone deacetylase and subunit of Set3 and Rpd3L complexes	physical	1	1	1	Affinity Capture-RNA
BGL2	YGR282C	Endo-beta-1,3-glucanase	physical	1	1	1	Affinity Capture-RNA
CCT2	YIL142W	Subunit beta of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
HRK1	YOR267C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
BZZ1	YHR114W	SH3 domain protein implicated in regulating actin polymerization	physical	1	1	1	Two-hybrid
BSP1	YPR171W	Adapter that links synaptojanins to the cortical actin cytoskeleton	physical	1	1	1	Affinity Capture-RNA
MLP1	YKR095W	Myosin-like protein associated with the nuclear envelope	physical	1	1	1	Affinity Capture-RNA
IST2	YBR086C	Cortical ER protein involved in ER-plasma membrane (PM) tethering	physical	1	1	1	Affinity Capture-RNA
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	genetic	1	1	1	Negative Genetic
CCT7	YJL111W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
CAM1	YPL048W	One of two isoforms of the gamma subunit of eEF1B	physical	1	1	1	Affinity Capture-RNA
EFB1	YAL003W	Translation elongation factor 1 beta	physical	1	1	1	Affinity Capture-RNA
ATG9	YDL149W	Transmembrane protein involved in forming Cvt and autophagic vesicles	physical	1	1	1	Affinity Capture-RNA
MKS1	YNL076W	Pleiotropic negative transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
BET5	YML077W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
ECM30	YLR436C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ALT2	YDR111C	Catalytically inactive alanine transaminase	physical	1	1	1	Affinity Capture-RNA
DRS2	YAL026C	Trans-golgi network aminophospholipid translocase (flippase)	genetic	1	1	1	Negative Genetic
HEK2	YBL032W	RNA binding protein involved in asymmetric localization of ASH1 mRNA	physical	1	1	1	Affinity Capture-RNA
DOT6	YER088C	Protein involved in rRNA and ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
GET3	YDL100C	Guanine nucleotide exchange factor for Gpa1p	physical	1	1	1	Affinity Capture-RNA
CYM1	YDR430C	Lysine-specific metalloprotease of the pitrilysin family	physical	1	1	1	Affinity Capture-RNA
CRZ1	YNL027W	Transcription factor, activates transcription of stress response genes	physical	1	1	1	Affinity Capture-RNA
GAS1	YMR307W	Beta-1,3-glucanosyltransferase required for cell wall assembly	physical	1	1	1	Affinity Capture-RNA
LSP1	YPL004C	Eisosome core component	physical	1	1	1	Affinity Capture-RNA
ASA1	YPR085C	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
AAC3	YBR085W	Mitochondrial inner membrane ADP/ATP translocator	physical	1	1	1	Affinity Capture-RNA
APP1	YNL094W	Phosphatidate phosphatase, converts phosphatidate to diacylglycerol	physical	1	1	1	Affinity Capture-RNA
ARF1	YDL192W	ADP-ribosylation factor	genetic	1	1	1	Negative Genetic
IDH1	YNL037C	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
AHP1	YLR109W	Thiol-specific peroxiredoxin	physical	1	1	1	Affinity Capture-RNA
GSP1	YLR293C	Ran GTPase	physical	1	1	1	Affinity Capture-RNA
FET3	YMR058W	Ferro-O2-oxidoreductase	physical	1	1	1	Affinity Capture-RNA
ARO4	YBR249C	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Affinity Capture-RNA
ILV5	YLR355C	Acetohydroxyacid reductoisomerase and mtDNA binding protein	physical	1	1	1	Affinity Capture-RNA
FYV10	YIL097W	Subunit of GID complex	physical	1	1	1	Affinity Capture-RNA
FDO1	YMR144W	Protein involved in directionality of mating type switching	physical	1	1	1	Affinity Capture-RNA
AAT2	YLR027C	Cytosolic aspartate aminotransferase involved in nitrogen metabolism	physical	1	1	1	Affinity Capture-RNA
LCP5	YER127W	Essential protein involved in maturation of 18S rRNA	physical	1	1	1	Affinity Capture-RNA
GLC8	YMR311C	Regulatory subunit of protein phosphatase 1 (Glc7p)	physical	1	1	1	Affinity Capture-RNA
CHK1	YBR274W	Serine/threonine kinase and DNA damage checkpoint effector	physical	1	1	1	Affinity Capture-RNA
BFA1	YJR053W	Subunit of a two-component GTPase-activating protein, Bfa1p-Bub2p	physical	1	1	1	Affinity Capture-RNA
CAF120	YNL278W	Part of the CCR4-NOT transcriptional regulatory complex	physical	1	1	1	Affinity Capture-RNA
CMK1	YFR014C	Calmodulin-dependent protein kinase	physical	1	1	1	Affinity Capture-RNA
GYP6	YJL044C	GTPase-activating protein (GAP) for yeast Rab family member Ypt6p	physical	1	1	1	Affinity Capture-RNA
CCT5	YJR064W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
ADK1	YDR226W	Adenylate kinase, required for purine metabolism	physical	1	1	1	Affinity Capture-RNA
CLN1	YMR199W	G1 cyclin involved in regulation of the cell cycle	physical	1	1	1	Affinity Capture-RNA
GPD2	YOL059W	NAD-dependent glycerol 3-phosphate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
MDM30	YLR368W	F-box component of an SCF ubiquitin protein ligase complex	physical	1	1	1	Affinity Capture-RNA
FAR1	YJL157C	CDK inhibitor and nuclear anchor	physical	1	1	1	Affinity Capture-RNA
ATG12	YBR217W	Ubiquitin-like modifier involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-RNA
ATG11	YPR049C	Adapter protein for pexophagy and the Cvt targeting pathway	physical	1	1	1	Affinity Capture-RNA
KDX1	YKL161C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
CYC8	YBR112C	General transcriptional co-repressor	physical	1	1	1	Affinity Capture-RNA
DBF20	YPR111W	Ser/Thr kinase involved in late nuclear division	physical	1	1	1	Affinity Capture-RNA
LIA1	YJR070C	Deoxyhypusine hydroxylase	physical	1	1	1	Affinity Capture-RNA
MAE1	YKL029C	Mitochondrial malic enzyme	physical	1	1	1	Affinity Capture-RNA
CBK1	YNL161W	Serine/threonine protein kinase of the the RAM signaling network	physical	1	1	1	Affinity Capture-RNA
KRE6	YPR159W	Glucosyl hydrolase required for beta-1,6-glucan biosynthesis	physical	1	1	1	Affinity Capture-RNA
DSS1	YMR287C	3'-5' exoribonuclease	physical	1	1	1	Affinity Capture-RNA
CCT3	YJL014W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
ELM1	YKL048C	Serine/threonine protein kinase	genetic	1	1	1	Negative Genetic
HRT3	YLR097C	Putative SCF-ubiquitin ligase F-box protein	physical	1	1	1	Affinity Capture-RNA
GUF1	YLR289W	Mitochondrial matrix GTPase	physical	1	1	1	Affinity Capture-RNA
GPA2	YER020W	Nucleotide binding alpha subunit of the heterotrimeric G protein	physical	1	1	1	Affinity Capture-RNA
FHL1	YPR104C	Regulator of ribosomal protein (RP) transcription	physical	1	1	1	Affinity Capture-RNA
DSK2	YMR276W	Nuclear-enriched ubiquitin-like polyubiquitin-binding protein	physical	1	1	1	Affinity Capture-RNA
HMF1	YER057C	Member of the p14.5 protein family	physical	1	1	1	Affinity Capture-RNA
BUD32	YGR262C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
CDC60	YPL160W	Cytosolic leucyl tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
GRS1	YBR121C	Cytoplasmic and mitochondrial glycyl-tRNA synthase	physical	1	1	1	Affinity Capture-RNA
IPA1	YJR141W	Protein implicated in pre-mRNA processing and proteasomal degradation	physical	1	1	1	Affinity Capture-RNA
GPN3	YLR243W	Putative GTPase with a role in biogenesis of RNA pol II and polIII	physical	1	1	1	Affinity Capture-RNA
MET6	YER091C	Cobalamin-independent methionine synthase	physical	1	1	1	Affinity Capture-RNA
MNP1	YGL068W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MAG2	YLR427W	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LAS1	YKR063C	Endonuclease involved in pre-rRNA processing at both ends of ITS2	physical	1	1	1	Affinity Capture-RNA
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	physical	1	1	1	Affinity Capture-RNA
CAC2	YML102W	Subunit of chromatin assembly factor I (CAF-1), with Rlf2p and Msi1p	physical	1	1	1	Affinity Capture-RNA
CWC21	YDR482C	Protein involved in RNA splicing by the spliceosome	physical	1	1	1	Affinity Capture-RNA
HIR2	YOR038C	Subunit of HIR nucleosome assembly complex	physical	1	1	1	Affinity Capture-RNA
ISU1	YPL135W	Conserved protein of the mitochondrial matrix	physical	1	1	1	Affinity Capture-RNA
DIA2	YOR080W	Origin-binding F-box protein	physical	1	1	1	Affinity Capture-RNA
DPB11	YJL090C	DNA replication initiation protein	physical	1	1	1	Affinity Capture-RNA
CDC123	YLR215C	Assembly factor for the eIF2 translation initiation factor complex	physical	1	1	1	Affinity Capture-RNA
CAF4	YKR036C	WD40 repeat-containing protein associated with the CCR4-NOT complex	physical	1	1	1	Affinity Capture-RNA
BEM4	YPL161C	Protein involved in establishment of cell polarity and bud emergence	physical	1	1	1	Affinity Capture-RNA
KIN28	YDL108W	Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly	physical	1	1	1	Affinity Capture-RNA
CIK1	YMR198W	Kinesin-associated protein	physical	1	1	1	Affinity Capture-RNA
ARF2	YDL137W	ADP-ribosylation factor	physical	1	1	1	Affinity Capture-RNA
ECM33	YBR078W	GPI-anchored protein involved in efficient glucose uptake	physical	1	1	1	Affinity Capture-RNA
MAP2	YBL091C	Methionine aminopeptidase	physical	1	1	1	Affinity Capture-RNA
CLB2	YPR119W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-RNA
AIR1	YIL079C	Zinc knuckle protein	physical	1	1	1	Affinity Capture-RNA
MDH2	YOL126C	Cytoplasmic malate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ELC1	YPL046C	Elongin C, conserved among eukaryotes	physical	1	1	1	Affinity Capture-RNA
ELG1	YOR144C	Subunit of an alternative replication factor C complex	physical	1	1	1	Affinity Capture-RNA
MCK1	YNL307C	Dual-specificity ser/thr and tyrosine protein kinase	physical	1	1	1	Affinity Capture-RNA
MFB1	YDR219C	Mitochondria-associated F-box protein	physical	1	1	1	Affinity Capture-RNA
LSM8	YJR022W	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
FAL1	YDR021W	Nucleolar protein required for maturation of 18S rRNA	physical	1	1	1	Affinity Capture-RNA
LIF1	YGL090W	Component of the DNA ligase IV complex	physical	1	1	1	Affinity Capture-RNA
FUB1	YCR076C	Proteasome-binding protein	physical	1	1	1	Affinity Capture-RNA
EAP1	YKL204W	eIF4E-associated protein, competes with eIF4G for binding to eIF4E	physical	1	1	1	Affinity Capture-Western
DUT1	YBR252W	Deoxyuridine triphosphate diphosphatase (dUTPase)	physical	1	1	1	Affinity Capture-RNA
LOS1	YKL205W	Nuclear pore protein	physical	1	1	1	Affinity Capture-RNA
DEF1	YKL054C	RNAPII degradation factor	physical	1	1	1	PCA
IST3	YIR005W	Component of the U2 snRNP	physical	1	1	1	Affinity Capture-RNA
FUS3	YBL016W	Mitogen-activated serine/threonine protein kinase involved in mating	genetic	1	1	1	Synthetic Rescue
CBR1	YIL043C	Cytochrome b reductase and NADH-dependent reductase for Dph3p	physical	1	1	1	Affinity Capture-RNA
MDJ1	YFL016C	Co-chaperone that stimulates HSP70 protein Ssc1p ATPase activity	physical	1	1	1	Affinity Capture-RNA
MEC3	YLR288C	DNA damage and meiotic pachytene checkpoint protein	physical	1	1	1	Affinity Capture-RNA
GCR2	YNL199C	Transcriptional activator of genes involved in glycolysis	physical	1	1	1	Affinity Capture-RNA
ARA1	YBR149W	NADP+ dependent arabinose dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ADE6	YGR061C	Formylglycinamidine-ribonucleotide (FGAM)-synthetase	physical	1	1	1	Affinity Capture-RNA
HOM2	YDR158W	Aspartic beta semi-aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-RNA
MDH3	YDL078C	Peroxisomal malate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ATG5	YPL149W	Conserved protein involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-RNA
APE3	YBR286W	Vacuolar aminopeptidase Y	physical	1	1	1	Affinity Capture-RNA
MET16	YPR167C	3'-phosphoadenylsulfate reductase	physical	1	1	1	Affinity Capture-RNA
ERG11	YHR007C	Lanosterol 14-alpha-demethylase	physical	1	1	1	Affinity Capture-RNA
EXG1	YLR300W	Major exo-1,3-beta-glucanase of the cell wall	physical	1	1	1	Affinity Capture-RNA
ARO9	YHR137W	Aromatic aminotransferase II	physical	1	1	1	Affinity Capture-RNA
MMS22	YLR320W	Subunit of E3 ubiquitin ligase complex involved in replication repair	physical	1	1	1	Affinity Capture-RNA
MMS22	YLR320W	Subunit of E3 ubiquitin ligase complex involved in replication repair	genetic	1	1	1	Negative Genetic
APM4	YOL062C	Cargo-binding mu subunit of AP-2	physical	1	1	1	Affinity Capture-RNA
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	physical	1	1	1	Affinity Capture-RNA
ATP7	YKL016C	Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ADH5	YBR145W	Alcohol dehydrogenase isoenzyme V	physical	1	1	1	Affinity Capture-RNA
DAD2	YKR083C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
DUO1	YGL061C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
DDI1	YER143W	Aspartic-type endopeptidase	physical	1	1	1	Affinity Capture-RNA
BUD27	YFL023W	Unconventional prefoldin protein involved in translation initiation	physical	1	1	1	Affinity Capture-RNA
GLG2	YJL137C	Glycogenin glucosyltransferase	physical	1	1	1	Affinity Capture-RNA
LAC1	YKL008C	Ceramide synthase component	physical	1	1	1	Affinity Capture-RNA
ATG1	YGL180W	Protein serine/threonine kinase	physical	1	1	1	Affinity Capture-RNA
ATG13	YPR185W	Regulatory subunit of the Atg1p signaling complex	physical	1	1	1	Affinity Capture-RNA
ATG16	YMR159C	Conserved protein involved in autophagy	physical	1	1	1	Affinity Capture-RNA
ATP20	YPR020W	Subunit g of the mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
DAL82	YNL314W	Positive regulator of allophanate inducible genes	physical	1	1	1	Affinity Capture-RNA
BIM1	YER016W	Microtubule plus end-tracking protein	physical	1	1	1	Affinity Capture-RNA
ECM19	YLR390W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FUI1	YBL042C	High affinity uridine permease, localizes to the plasma membrane	physical	1	1	1	Affinity Capture-RNA
GDH1	YOR375C	NADP(+)-dependent glutamate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
GFD1	YMR255W	Coiled-coiled protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CUP2	YGL166W	Copper-binding transcription factor	physical	1	1	1	Affinity Capture-RNA
GZF3	YJL110C	GATA zinc finger protein	physical	1	1	1	Affinity Capture-RNA
INO2	YDR123C	Transcription factor	physical	1	1	1	Affinity Capture-RNA
IPK1	YDR315C	Inositol 1,3,4,5,6-pentakisphosphate 2-kinase	physical	1	1	1	Affinity Capture-RNA
CWC24	YLR323C	General splicing factor	physical	1	1	1	Affinity Capture-RNA
ISU2	YOR226C	Mitochondrial protein required for iron-sulfur protein synthesis	physical	1	1	1	Affinity Capture-RNA
LST7	YGR057C	Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p	physical	1	1	1	Affinity Capture-RNA
MCM16	YPR046W	Component of the Ctf19 complex and the COMA subcomplex	physical	1	1	1	Affinity Capture-RNA
MOB2	YFL034C-B	Activator of Cbk1p kinase	genetic	1	1	1	Positive Genetic
HAA1	YPR008W	Transcriptional activator involved in adaptation to weak acid stress	physical	1	1	1	Affinity Capture-RNA
COG2	YGR120C	Essential component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
ASM4	YDL088C	FG-nucleoporin component of central core of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-RNA
CLG1	YGL215W	Cyclin-like protein that interacts with Pho85p	physical	1	1	1	Affinity Capture-RNA
ACA1	YER045C	ATF/CREB family basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
MND2	YIR025W	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
JSN1	YJR091C	Member of the Puf family of RNA-binding proteins	physical	1	1	1	Affinity Capture-RNA
FOB1	YDR110W	Nucleolar protein that binds the rDNA replication fork barrier site	physical	1	1	1	Affinity Capture-RNA
ECI1	YLR284C	Peroxisomal delta3,delta2-enoyl-CoA isomerase	physical	1	1	1	Affinity Capture-RNA
DAS2	YDR020C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
BMT2	YBR141C	Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
CTL1	YMR180C	RNA 5'-triphosphatase, localizes to both the nucleus and cytoplasm	physical	1	1	1	Affinity Capture-RNA
CHA4	YLR098C	DNA binding transcriptional activator	physical	1	1	1	Affinity Capture-RNA
AIM7	YDR063W	Protein that interacts with Arp2/3 complex	physical	1	1	1	Affinity Capture-RNA
IRC6	YFR043C	Clathrin coat accessory factor	physical	1	1	1	Affinity Capture-RNA
ASK10	YGR097W	Regulator of the Fps1p glycerol channel	physical	1	1	1	Affinity Capture-RNA
ASK10	YGR097W	Regulator of the Fps1p glycerol channel	genetic	1	1	1	Negative Genetic
ITT1	YML068W	Protein that modulates the efficiency of translation termination	physical	1	1	1	Affinity Capture-RNA
MET14	YKL001C	Adenylylsulfate kinase	physical	1	1	1	Affinity Capture-RNA
IBD2	YNL164C	Component of the BUB2-dependent spindle checkpoint pathway	physical	1	1	1	Affinity Capture-RNA
DSE3	YOR264W	Daughter cell-specific protein, may help establish daughter fate	physical	1	1	1	Affinity Capture-RNA
BOS1	YLR078C	v-SNARE (vesicle specific SNAP receptor)	physical	1	1	1	Affinity Capture-RNA
APC5	YOR249C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
CDC27	YBL084C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
CDC26	YFR036W	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
CLB1	YGR108W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-RNA
BRE5	YNR051C	Ubiquitin protease cofactor	physical	1	1	1	Affinity Capture-RNA
CET1	YPL228W	RNA 5'-triphosphatase involved in mRNA 5' capping	physical	1	1	1	Affinity Capture-RNA
DAL81	YIR023W	Positive regulator of genes in multiple nitrogen degradation pathways	genetic	1	1	1	Positive Genetic
IES4	YOR189W	Component of the INO80 chromatiin remodeling complex	physical	1	1	1	Affinity Capture-RNA
IES6	YEL044W	Component of the INO80 chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
HOS3	YPL116W	Trichostatin A-insensitive homodimeric histone deacetylase (HDAC)	physical	1	1	1	Affinity Capture-RNA
MCM1	YMR043W	Transcription factor	physical	1	1	1	Affinity Capture-RNA
CBF1	YJR060W	Basic helix-loop-helix (bHLH) protein	physical	1	1	1	Affinity Capture-RNA
BUD5	YCR038C	GTP/GDP exchange factor for Rsr1p (Bud1p)	physical	1	1	1	Affinity Capture-RNA
BUR6	YER159C	Subunit of a heterodimeric NC2 transcription regulator complex	physical	1	1	1	Affinity Capture-RNA
ATG8	YBL078C	Ub-like protein	physical	1	1	1	Affinity Capture-RNA
DBF4	YDR052C	Regulatory subunit of Cdc7p-Dbf4p kinase complex	physical	1	1	1	Affinity Capture-RNA
DBP5	YOR046C	Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family	physical	1	1	1	Affinity Capture-RNA
ELO2	YCR034W	Fatty acid elongase, involved in sphingolipid biosynthesis	physical	1	1	1	Affinity Capture-RNA
KAR3	YPR141C	Minus-end-directed microtubule motor	genetic	1	1	1	Negative Genetic
KAR9	YPL269W	Spindle positioning factor	physical	1	1	1	Affinity Capture-RNA
MAD1	YGL086W	Coiled-coil protein involved in spindle-assembly checkpoint	physical	1	1	1	Affinity Capture-RNA
FIG4	YNL325C	Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase	physical	1	1	1	Affinity Capture-RNA
CCZ1	YBR131W	Subunit of a heterodimeric guanine nucleotide exchange factor (GEF)	physical	1	1	1	Affinity Capture-RNA
DPH1	YIL103W	Protein required for synthesis of diphthamide	physical	1	1	1	Affinity Capture-RNA
JNM1	YMR294W	Component of the yeast dynactin complex	physical	1	1	1	Affinity Capture-RNA
BUD8	YLR353W	Protein involved in bud-site selection	physical	1	1	1	Affinity Capture-RNA
GLN3	YER040W	Transcriptional activator in nitrogen catabolite repression system	physical	1	1	1	Affinity Capture-RNA
HIP1	YGR191W	High-affinity histidine permease	physical	1	1	1	Affinity Capture-RNA
SST2	YLR452C	GTPase-activating protein for Gpa1p	genetic	1	1	1	Negative Genetic
RPN12	YFR052W	Subunit of the 19S regulatory particle of the 26S proteasome lid	physical	1	1	1	Affinity Capture-MS
RPN12	YFR052W	Subunit of the 19S regulatory particle of the 26S proteasome lid	genetic	1	1	1	Negative Genetic
SRO9	YCL037C	Cytoplasmic RNA-binding protein	physical	1	1	1	PCA
RPN3	YER021W	Essential non-ATPase regulatory subunit of the 26S proteasome lid	physical	1	1	1	PCA
PUF2	YPR042C	PUF family mRNA-binding protein	physical	1	1	1	Affinity Capture-RNA
PUF2	YPR042C	PUF family mRNA-binding protein	genetic	1	1	1	Phenotypic Enhancement
RPS26A	YGL189C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TRP1	YDR007W	Phosphoribosylanthranilate isomerase	physical	1	1	1	Affinity Capture-RNA
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	physical	1	1	1	Affinity Capture-RNA
YNR029C	YNR029C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PRI2	YKL045W	Subunit of DNA primase	physical	1	1	1	Affinity Capture-RNA
NRD1	YNL251C	RNA-binding subunit of Nrd1 complex	physical	1	1	1	Affinity Capture-RNA
TAF3	YPL011C	TFIID subunit (47 kDa)	physical	1	1	1	Affinity Capture-RNA
NDC1	YML031W	Subunit of the transmembrane ring of the nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-RNA
RRD1	YIL153W	Peptidyl-prolyl cis/trans-isomerase	physical	1	1	1	Affinity Capture-RNA
SNU71	YGR013W	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-RNA
UBP9	YER098W	Ubiquitin-specific protease that cleaves ubiquitin-protein fusions	physical	1	1	1	Affinity Capture-RNA
YMC2	YBR104W	Putative mitochondrial inner membrane transporter	physical	1	1	1	Affinity Capture-RNA
TVP18	YMR071C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
MRPS28	YDR337W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
NAM7	YMR080C	ATP-dependent RNA helicase of the SFI superfamily	physical	1	1	1	Affinity Capture-RNA
TAF13	YML098W	TFIID subunit (19 kDa)	physical	1	1	1	Affinity Capture-RNA
PNO1	YOR145C	Essential nucleolar protein required for pre-18S rRNA processing	physical	1	1	1	Affinity Capture-RNA
YIL152W	YIL152W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SYS1	YJL004C	Integral membrane protein of the Golgi	physical	1	1	1	Affinity Capture-RNA
PKH2	YOL100W	Serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
PCL10	YGL134W	Pho85p cyclin	physical	1	1	1	Affinity Capture-RNA
SAS10	YDL153C	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	1	1	1	Affinity Capture-RNA
MRPL8	YJL063C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
RAD53	YPL153C	DNA damage response kinase	physical	1	1	1	Affinity Capture-RNA
PRB1	YEL060C	Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity	physical	1	1	1	Affinity Capture-RNA
RBS1	YDL189W	Protein involved in assembly of the RNA Pol III complex	physical	1	1	1	Affinity Capture-RNA
PAR32	YDL173W	Low complexity protein	physical	1	1	1	Affinity Capture-RNA
NMD4	YLR363C	Protein that may be involved in nonsense-mediated mRNA decay	physical	1	1	1	Affinity Capture-RNA
SIR2	YDL042C	Conserved NAD+ dependent histone deacetylase of the Sirtuin family	physical	1	1	1	Affinity Capture-RNA
SIR2	YDL042C	Conserved NAD+ dependent histone deacetylase of the Sirtuin family	genetic	1	1	1	Synthetic Rescue
MRPL9	YGR220C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
YRB2	YIL063C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RIM2	YBR192W	Mitochondrial pyrimidine nucleotide transporter	physical	1	1	1	Affinity Capture-RNA
TAF9	YMR236W	Subunit (17 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
PIN4	YBL051C	Protein involved in G2/M phase progression and response to DNA damage	physical	1	1	1	Affinity Capture-RNA
QCR2	YPR191W	Subunit 2 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Affinity Capture-RNA
RHO5	YNL180C	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	physical	1	1	1	Affinity Capture-RNA
POR2	YIL114C	Putative mitochondrial porin (voltage-dependent anion channel)	physical	1	1	1	Affinity Capture-RNA
PGD1	YGL025C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MRPL16	YBL038W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
YLH47	YPR125W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
TAF4	YMR005W	TFIID subunit (48 kDa)	physical	1	1	1	Affinity Capture-RNA
NPR2	YEL062W	Subunit of the Iml1p/SEACIT complex	physical	1	1	1	Affinity Capture-RNA
TRM11	YOL124C	Catalytic subunit of adoMet-dependent tRNA methyltransferase complex	physical	1	1	1	Affinity Capture-RNA
TFC4	YGR047C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Affinity Capture-RNA
YAP1	YML007W	Basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
RRN7	YJL025W	Component of the core factor (CF) rDNA transcription factor complex	physical	1	1	1	Affinity Capture-RNA
ORC5	YNL261W	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Affinity Capture-RNA
TGL3	YMR313C	Bifunctional triacylglycerol lipase and LPE acyltransferase	physical	1	1	1	Affinity Capture-RNA
MRPL39	YML009C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
NMA1	YLR328W	Nicotinic acid mononucleotide adenylyltransferase	physical	1	1	1	Affinity Capture-RNA
TMC1	YOR052C	AN1-type zinc finger protein, effector of proteotoxic stress response	physical	1	1	1	Affinity Capture-RNA
SIR4	YDR227W	SIR protein involved in assembly of silent chromatin domains	physical	1	1	1	Affinity Capture-RNA
SIR4	YDR227W	SIR protein involved in assembly of silent chromatin domains	genetic	1	1	1	Synthetic Rescue
YNL208W	YNL208W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SDA1	YGR245C	Protein required for actin organization and passage through Start	physical	1	1	1	Affinity Capture-RNA
URB2	YJR041C	Protein required for normal metabolism of the rRNA primary transcript	physical	1	1	1	Affinity Capture-RNA
SCW11	YGL028C	Cell wall protein with similarity to glucanases	physical	1	1	1	Affinity Capture-RNA
PPR1	YLR014C	Zinc finger transcription factor	physical	1	1	1	Affinity Capture-RNA
STB4	YMR019W	Putative transcription factor	physical	1	1	1	Affinity Capture-RNA
PPS1	YBR276C	Protein phosphatase	physical	1	1	1	Affinity Capture-RNA
SBE22	YHR103W	Protein involved in bud growth	physical	1	1	1	Affinity Capture-RNA
PAN3	YKL025C	Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex	physical	1	1	1	Affinity Capture-RNA
YIM1	YMR152W	Aldehyde reductase	physical	1	1	1	Affinity Capture-RNA
NDJ1	YOL104C	Protein that regulates meiotic SPB cohesion and telomere clustering	physical	1	1	1	Affinity Capture-RNA
RAD7	YJR052W	Nucleotide excision repair (NER) protein	physical	1	1	1	Affinity Capture-RNA
TTI2	YJR136C	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
USB1	YLR132C	Putative poly(U)-specific 3'-to-5' RNA exonuclease	physical	1	1	1	Affinity Capture-RNA
TAF10	YDR167W	Subunit (145 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
SYG1	YIL047C	Plasma membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RAD2	YGR258C	Single-stranded DNA endonuclease	physical	1	1	1	Affinity Capture-RNA
SLP1	YOR154W	Glycosylated integral ER membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RIM21	YNL294C	pH sensor molecule, component of the RIM101 pathway	physical	1	1	1	Affinity Capture-RNA
TYE7	YOR344C	Serine-rich protein that contains a bHLH DNA binding motif	physical	1	1	1	Affinity Capture-RNA
SKG3	YLR187W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RRP14	YKL082C	Essential protein, constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
SSN3	YPL042C	Component of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
RCM1	YNL022C	rRNA m5C methyltransferase	physical	1	1	1	Affinity Capture-RNA
ZDS1	YMR273C	Protein with a role in regulating Swe1p-dependent polarized growth	physical	1	1	1	Affinity Capture-RNA
YER134C	YER134C	Magnesium-dependent acid phosphatase	physical	1	1	1	Affinity Capture-RNA
RPR2	YIR015W	Subunit of nuclear RNase P	physical	1	1	1	Affinity Capture-RNA
PHO4	YFR034C	Basic helix-loop-helix (bHLH) transcription factor of the myc-family	physical	1	1	1	Affinity Capture-RNA
SGF11	YPL047W	Integral subunit of SAGA histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
NPL3	YDR432W	RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
YFH7	YFR007W	Putative kinase with similarity to the PRK/URK/PANK kinase subfamily	physical	1	1	1	Affinity Capture-RNA
SAC3	YDR159W	mRNA export factor	physical	1	1	1	Affinity Capture-RNA
YML018C	YML018C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PET123	YOR158W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
MTR2	YKL186C	mRNA transport regulator	physical	1	1	1	Affinity Capture-RNA
RMD9	YGL107C	Mitochondrial protein that controls mitochondrial gene expression	physical	1	1	1	Affinity Capture-RNA
PRR1	YKL116C	Serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
YEA4	YEL004W	Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter	physical	1	1	1	Affinity Capture-RNA
PUS6	YGR169C	tRNA:pseudouridine synthase	physical	1	1	1	Affinity Capture-RNA
YCT1	YLL055W	High-affinity cysteine-specific transporter	physical	1	1	1	Affinity Capture-RNA
PPG1	YNR032W	Serine protein phosphatase involved in formation of FAR complex	physical	1	1	1	Affinity Capture-RNA
RRP7	YCL031C	Essential protein involved in rRNA processing and ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
SDC1	YDR469W	Subunit of the COMPASS (Set1C) complex	physical	1	1	1	Affinity Capture-RNA
SMY2	YBR172C	GYF domain protein	physical	1	1	1	Affinity Capture-RNA
MRE11	YMR224C	Nuclease subunit of the MRX complex with Rad50p and Xrs2p	physical	1	1	1	Affinity Capture-RNA
YDL241W	YDL241W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RSM19	YNR037C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
SOK2	YMR016C	Nuclear protein that negatively regulates pseudohyphal differentiation	physical	1	1	1	Affinity Capture-RNA
MTG1	YMR097C	Putative GTPase peripheral to the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
SGN1	YIR001C	Cytoplasmic RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
RTR1	YER139C	Dual specificity protein phosphatase	physical	1	1	1	Affinity Capture-RNA
MRP49	YKL167C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL31	YKL138C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
YIL092W	YIL092W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YOR385W	YOR385W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPC25	YKL144C	RNA polymerase III subunit C25	physical	1	1	1	Affinity Capture-RNA
RMD5	YDR255C	Component of GID Complex that confers ubiquitin ligase (U3) activity	physical	1	1	1	Affinity Capture-RNA
YML082W	YML082W	Putative protein predicted to have carbon-sulfur lyase activity	physical	1	1	1	Affinity Capture-RNA
TPO1	YLL028W	Polyamine transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
WHI5	YOR083W	Repressor of G1 transcription	physical	1	1	1	Affinity Capture-RNA
RMI1	YPL024W	Subunit of the RecQ (Sgs1p) - Topo III (Top3p) complex	physical	1	1	1	Affinity Capture-RNA
RCL1	YOL010W	Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis	physical	1	1	1	Affinity Capture-RNA
NAB3	YPL190C	RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p)	physical	1	1	1	Affinity Capture-RNA
TCM62	YBR044C	Protein involved in assembly of the succinate dehydrogenase complex	physical	1	1	1	Affinity Capture-RNA
PIN2	YOR104W	Exomer-dependent cargo protein	physical	1	1	1	Affinity Capture-RNA
MUS81	YDR386W	Subunit of structure-specific Mms4p-Mus81p endonuclease	physical	1	1	1	Affinity Capture-RNA
SBH2	YER019C-A	Ssh1p-Sss1p-Sbh2p complex component	physical	1	1	1	Affinity Capture-RNA
SSK22	YCR073C	MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway	physical	1	1	1	Affinity Capture-RNA
URC2	YDR520C	Putative Zn(II)2Cys6 motif containing transcription factor	physical	1	1	1	Affinity Capture-RNA
PEX29	YDR479C	ER-resident protein involved in peroxisomal biogenesis	physical	1	1	1	Affinity Capture-RNA
NPP2	YEL016C	Nucleotide pyrophosphatase/phosphodiesterase	physical	1	1	1	Affinity Capture-RNA
VPS9	YML097C	Guanine nucleotide exchange factor (GEF) and ubiquitin receptor	physical	1	1	1	Affinity Capture-RNA
VPS52	YDR484W	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-RNA
RDH54	YBR073W	DNA-dependent ATPase	physical	1	1	1	Affinity Capture-RNA
UPS2	YLR168C	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
MRP2	YPR166C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
RTG1	YOL067C	Transcription factor (bHLH) involved in interorganelle communication	physical	1	1	1	Affinity Capture-RNA
TRS33	YOR115C	Core component of TRAPP complexes I, II and IV	physical	1	1	1	Affinity Capture-RNA
SRB8	YCR081W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
SSH4	YKL124W	Specificity factor required for Rsp5p-dependent ubiquitination	physical	1	1	1	Affinity Capture-RNA
SRP14	YDL092W	Signal recognition particle (SRP) subunit	physical	1	1	1	Affinity Capture-RNA
URE2	YNL229C	Nitrogen catabolite repression transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
TOK1	YJL093C	Outward-rectifier potassium channel of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
NVJ1	YHR195W	Nuclear envelope protein	physical	1	1	1	Affinity Capture-RNA
RAD34	YDR314C	Protein involved in nucleotide excision repair (NER)	physical	1	1	1	Affinity Capture-RNA
NAM9	YNL137C	Mitochondrial ribosomal component of the small subunit	physical	1	1	1	Affinity Capture-RNA
PMP1	YCR024C-A	Regulatory subunit for the plasma membrane H(+)-ATPase Pma1p	physical	1	1	1	Affinity Capture-RNA
SPC110	YDR356W	Inner plaque spindle pole body (SPB) component	physical	1	1	1	Affinity Capture-RNA
RKM2	YDR198C	Ribosomal protein lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
MSC3	YLR219W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MSS116	YDR194C	Mitochondrial transcription elongation factor	physical	1	1	1	Affinity Capture-RNA
SAM35	YHR083W	Component of the sorting and assembly machinery (SAM) complex	physical	1	1	1	Affinity Capture-RNA
YLR177W	YLR177W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NOP16	YER002W	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
MTR3	YGR158C	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-RNA
PET127	YOR017W	Protein with a role in 5'-end processing of mitochondrial RNAs	physical	1	1	1	Affinity Capture-RNA
PLM2	YDR501W	Putative transcription factor, contains Forkhead Associated domain	physical	1	1	1	Affinity Capture-RNA
SUR1	YPL057C	Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit	physical	1	1	1	Affinity Capture-RNA
UBS1	YBR165W	Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p	physical	1	1	1	Affinity Capture-RNA
SUT1	YGL162W	Zn(II)2Cys6 family transcription factor	physical	1	1	1	Affinity Capture-RNA
RBA50	YDR527W	Protein involved in transcription	physical	1	1	1	Affinity Capture-RNA
MRC1	YCL061C	S-phase checkpoint protein required for DNA replication	physical	1	1	1	Affinity Capture-RNA
RRI1	YDL216C	Catalytic subunit of the COP9 signalosome (CSN) complex	physical	1	1	1	Affinity Capture-RNA
MSA1	YOR066W	Activator of G1-specific transcription factors MBF and SBF	physical	1	1	1	Affinity Capture-RNA
SPT21	YMR179W	Protein with a role in transcriptional silencing	physical	1	1	1	Affinity Capture-RNA
NNF2	YGR089W	Protein that exhibits physical and genetic interactions with Rpb8p	physical	1	1	1	Affinity Capture-RNA
MVP1	YMR004W	Protein required for sorting proteins to the vacuole	physical	1	1	1	Affinity Capture-RNA
SEC5	YDR166C	Essential 107kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-RNA
PUF6	YDR496C	Pumilio-homology domain protein	genetic	1	1	1	Synthetic Rescue
NSE3	YDR288W	Component of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
STB1	YNL309W	Protein with role in regulation of MBF-specific transcription at Start	physical	1	1	1	Affinity Capture-RNA
SMC6	YLR383W	Subunit of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
RNA15	YGL044C	Component of the cleavage and polyadenylation factor I (CF I)	physical	1	1	1	Affinity Capture-RNA
SLI15	YBR156C	Subunit of the conserved chromosomal passenger complex (CPC)	physical	1	1	1	Affinity Capture-RNA
NSL1	YPL233W	Essential component of the MIND kinetochore complex	physical	1	1	1	Affinity Capture-RNA
NSI1	YDR026C	RNA polymerase I termination factor	physical	1	1	1	Affinity Capture-RNA
PCL1	YNL289W	Cyclin, interacts with cyclin-dependent kinase Pho85p	physical	1	1	1	Affinity Capture-RNA
PRP5	YBR237W	RNA helicase in the DEAD-box family	physical	1	1	1	Affinity Capture-RNA
SPP1	YPL138C	Subunit of COMPASS (Set1C)	physical	1	1	1	Affinity Capture-RNA
UBP13	YBL067C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-RNA
SOH1	YGL127C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
TDP1	YBR223C	Tyrosyl-DNA phosphodiesterase I	physical	1	1	1	Affinity Capture-RNA
YAP3	YHL009C	Basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
RIX7	YLL034C	Putative ATPase of the AAA family	physical	1	1	1	Affinity Capture-RNA
RNT1	YMR239C	Nuclear dsRNA-specific ribonuclease (RNase III)	physical	1	1	1	Affinity Capture-RNA
TIM13	YGR181W	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
STB5	YHR178W	Transcription factor	physical	1	1	1	Affinity Capture-RNA
STB5	YHR178W	Transcription factor	genetic	1	1	1	Negative Genetic
YRR1	YOR162C	Zn2-Cys6 zinc-finger transcription factor	physical	1	1	1	Affinity Capture-RNA
ULP1	YPL020C	Protease that specifically cleaves Smt3p protein conjugates	physical	1	1	1	Affinity Capture-RNA
RAD6	YGL058W	Ubiquitin-conjugating enzyme (E2)	physical	1	1	1	Affinity Capture-RNA
RLF2	YPR018W	Largest subunit (p90) of the Chromatin Assembly Complex (CAF-1)	physical	1	1	1	Affinity Capture-RNA
REC107	YJR021C	Protein involved in early stages of meiotic recombination	physical	1	1	1	Affinity Capture-RNA
PHO3	YBR092C	Constitutively expressed acid phosphatase similar to Pho5p	physical	1	1	1	Affinity Capture-RNA
USE1	YGL098W	Essential SNARE protein localized to the ER	physical	1	1	1	Affinity Capture-RNA
RMD8	YFR048W	Cytosolic protein required for sporulation	physical	1	1	1	Affinity Capture-RNA
MSM1	YGR171C	Mitochondrial methionyl-tRNA synthetase (MetRS)	physical	1	1	1	Affinity Capture-RNA
PSP1	YDR505C	Asn and gln rich protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PEX2	YJL210W	RING-finger peroxin and E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
MRS3	YJL133W	Iron transporter, mediates Fe2+ transport across inner mito membrane	physical	1	1	1	Affinity Capture-RNA
SVF1	YDR346C	Protein with a potential role in cell survival pathways	physical	1	1	1	Affinity Capture-RNA
TFC6	YDR362C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Affinity Capture-RNA
SWM1	YDR260C	Subunit of the anaphase-promoting complex (APC)	physical	1	1	1	Affinity Capture-RNA
RXT2	YBR095C	Component of the histone deacetylase Rpd3L complex	physical	1	1	1	Affinity Capture-RNA
PZF1	YPR186C	Transcription factor IIIA (TFIIIA)	physical	1	1	1	Affinity Capture-RNA
RCR2	YDR003W	Vacuolar ubiquitin ligase-substrate adaptor	physical	1	1	1	Affinity Capture-RNA
PEX3	YDR329C	Peroxisomal membrane protein (PMP)	physical	1	1	1	Affinity Capture-RNA
MTF2	YDL044C	Mitochondrial protein that interacts with mitochondrial RNA polymerase	physical	1	1	1	Affinity Capture-RNA
PML39	YML107C	Protein required for nuclear retention of unspliced pre-mRNAs	physical	1	1	1	Affinity Capture-RNA
SAN1	YDR143C	Ubiquitin-protein ligase	physical	1	1	1	Affinity Capture-RNA
RNH202	YDR279W	Ribonuclease H2 subunit	physical	1	1	1	Affinity Capture-RNA
OPT1	YJL212C	Proton-coupled oligopeptide transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
VPS68	YOL129W	Vacuolar membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YDL012C	YDL012C	Tail-anchored plasma membrane protein with a conserved CYSTM module	physical	1	1	1	Affinity Capture-RNA
YBR242W	YBR242W	5'-deoxynucleotidase involved in deoxyribonucleoside monophosphate deg	physical	1	1	1	Affinity Capture-RNA
RQT4	YKR023W	Subunit of ribosome-associated quality control trigger complex (RQT)	physical	1	1	1	Affinity Capture-RNA
SCM4	YGR049W	Mitochondrial outer membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SHY1	YGR112W	Mitochondrial inner membrane protein required for complex IV assembly	physical	1	1	1	Affinity Capture-RNA
MSD1	YPL104W	Mitochondrial aspartyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
PTP2	YOR208W	Phosphotyrosine-specific phosphatase	physical	1	1	1	Affinity Capture-RNA
TOM20	YGR082W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
POA1	YBR022W	Phosphatase that is highly specific for ADP-ribose 1''-phosphate	physical	1	1	1	Affinity Capture-RNA
YBR016W	YBR016W	Tail-anchored plasma membrane protein with a conserved CYSTM module	physical	1	1	1	Affinity Capture-RNA
PET54	YGR222W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
UBP11	YKR098C	Ubiquitin-specific protease	physical	1	1	1	Affinity Capture-RNA
MRPL37	YBR268W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
PEX10	YDR265W	Peroxisomal membrane E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
MTM1	YGR257C	Mitochondrial protein of the mitochondrial carrier family	physical	1	1	1	Affinity Capture-RNA
UIP5	YKR044W	Protein of unknown function that interacts with Ulp1p	physical	1	1	1	Affinity Capture-RNA
SPB4	YFL002C	Putative ATP-dependent RNA helicase	physical	1	1	1	Affinity Capture-RNA
SML1	YML058W	Ribonucleotide reductase inhibitor	physical	1	1	1	Affinity Capture-RNA
TRS23	YDR246W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
PKP1	YIL042C	Mitochondrial protein kinase	physical	1	1	1	Affinity Capture-RNA
SKN7	YHR206W	Nuclear response regulator and transcription factor	physical	1	1	1	Affinity Capture-RNA
TFC3	YAL001C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Affinity Capture-RNA
RRG1	YDR065W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SNF12	YNR023W	73 kDa subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
YCP4	YCR004C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PCT1	YGR202C	Cholinephosphate cytidylyltransferase	physical	1	1	1	Affinity Capture-RNA
PTR2	YKR093W	Integral membrane peptide transporter	physical	1	1	1	Affinity Capture-RNA
TOM7	YNL070W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
RPC11	YDR045C	RNA polymerase III subunit C11	physical	1	1	1	Affinity Capture-RNA
TIM17	YJL143W	Essential component of the TIM23 complex	physical	1	1	1	Affinity Capture-RNA
TIM17	YJL143W	Essential component of the TIM23 complex	genetic	1	1	1	Dosage Rescue
NHP2	YDL208W	Protein related to mammalian high mobility group (HMG) proteins	physical	1	1	1	Affinity Capture-RNA
PCL7	YIL050W	Pho85p cyclin of the Pho80p subfamily	physical	1	1	1	Affinity Capture-RNA
SMD3	YLR147C	Core Sm protein Sm D3	physical	1	1	1	Affinity Capture-RNA
MSB4	YOL112W	GTPase-activating protein of the Ras superfamily	physical	1	1	1	Affinity Capture-RNA
SMY1	YKL079W	Kinesin-like myosin passenger-protein	physical	1	1	1	Affinity Capture-RNA
RPS27B	YHR021C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RFU1	YLR073C	Protein that inhibits Doa4p deubiquitinating activity	physical	1	1	1	Affinity Capture-RNA
RSM22	YKL155C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
PSR1	YLL010C	Plasma membrane-associated protein phosphatase	physical	1	1	1	Affinity Capture-RNA
SWT1	YOR166C	RNA endoribonuclease involved in perinuclear mRNP quality control	physical	1	1	1	Affinity Capture-RNA
SPT10	YJL127C	Histone H3 acetylase with a role in transcriptional regulation	physical	1	1	1	Affinity Capture-RNA
RPF1	YHR088W	Protein involved in assembly and export of the large ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
PBP4	YDL053C	Pbp1p binding protein	physical	1	1	1	Affinity Capture-RNA
SKM1	YOL113W	Member of the PAK family of serine/threonine protein kinases	physical	1	1	1	Affinity Capture-RNA
YJR096W	YJR096W	Xylose and arabinose reductase	physical	1	1	1	Affinity Capture-RNA
SLX4	YLR135W	Endonuclease involved in processing DNA	physical	1	1	1	Affinity Capture-RNA
TAF12	YDR145W	Subunit (61/68 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
YKU70	YMR284W	Subunit of the telomeric Ku complex (Yku70p-Yku80p)	physical	1	1	1	Affinity Capture-RNA
MRPL33	YMR286W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
SWC4	YGR002C	Component of the Swr1p complex that incorporates Htz1p into chromatin	physical	1	1	1	Affinity Capture-RNA
UPC2	YDR213W	Sterol regulatory element binding protein	physical	1	1	1	Affinity Capture-RNA
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	physical	1	1	1	Affinity Capture-RNA
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	genetic	1	1	1	Negative Genetic
PRP18	YGR006W	Splicing factor and component of snRNP U5	physical	1	1	1	Affinity Capture-RNA
RRP9	YPR137W	Protein involved in pre-rRNA processing	physical	1	1	1	Affinity Capture-RNA
SED5	YLR026C	cis-Golgi t-SNARE syntaxin	physical	1	1	1	Affinity Capture-RNA
YSY6	YBR162W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TDA1	YMR291W	Protein kinase of unknown cellular role	physical	1	1	1	Affinity Capture-RNA
SOV1	YMR066W	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SWD3	YBR175W	Essential subunit of the COMPASS (Set1C) complex	physical	1	1	1	Affinity Capture-RNA
SRL2	YLR082C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YCR090C	YCR090C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YBR225W	YBR225W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
REX2	YLR059C	3'-5' RNA exonuclease	physical	1	1	1	Affinity Capture-RNA
OSW7	YFR039C	Protein involved in outer spore wall assembly	physical	1	1	1	Affinity Capture-RNA
NRP1	YDL167C	Putative RNA binding protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NEJ1	YLR265C	DNA end-binding protein required for nonhomologous end joining (NHEJ)	physical	1	1	1	Affinity Capture-RNA
RIP1	YEL024W	Ubiquinol-cytochrome-c reductase	physical	1	1	1	Affinity Capture-RNA
YMR209C	YMR209C	Putative S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
PRP40	YKL012W	U1 snRNP protein involved in splicing	physical	1	1	1	Affinity Capture-RNA
WSS1	YHR134W	SUMO-ligase and SUMO-targeted metalloprotease	physical	1	1	1	Affinity Capture-RNA
YHR033W	YHR033W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPT15	YER148W	TATA-binding protein (TBP)	physical	1	1	1	Affinity Capture-RNA
NGL2	YMR285C	Protein involved in 5.8S rRNA processing	physical	1	1	1	Affinity Capture-RNA
TFB3	YDR460W	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	1	1	1	Affinity Capture-RNA
SPT4	YGR063C	Spt4p/5p (DSIF) transcription elongation factor complex subunit	physical	1	1	1	Affinity Capture-RNA
PRP4	YPR178W	Splicing factor	physical	1	1	1	Affinity Capture-RNA
SYN8	YAL014C	Endosomal SNARE related to mammalian syntaxin 8	physical	1	1	1	Affinity Capture-RNA
SNU56	YDR240C	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-RNA
NSE1	YLR007W	Component of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
SWI1	YPL016W	Subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
NOB1	YOR056C	Protein involved in proteasomal and 40S ribosomal subunit biogenesis	physical	1	1	1	Affinity Capture-RNA
PCL9	YDL179W	Cyclin	physical	1	1	1	Affinity Capture-RNA
TOM6	YOR045W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
VIK1	YPL253C	Protein that forms a kinesin-14 heterodimeric motor with Kar3p	physical	1	1	1	Affinity Capture-RNA
YNR048W	YNR048W	Potential noncatalytic subunit for phospholipid translocase Dnf3p	physical	1	1	1	Affinity Capture-RNA
PIB2	YGL023C	Phosphatidylinositol 3-phosphate binding protein	physical	1	1	1	Affinity Capture-RNA
RRP8	YDR083W	Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
YPR084W	YPR084W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SLI1	YGR212W	N-acetyltransferase	physical	1	1	1	Affinity Capture-RNA
STP2	YHR006W	Transcription factor	physical	1	1	1	Affinity Capture-RNA
PET309	YLR067C	Specific translational activator for the COX1 mRNA	physical	1	1	1	Affinity Capture-RNA
MTC2	YKL098W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MVB12	YGR206W	ESCRT-I subunit required to stabilize ESCRT-I core complex oligomers	physical	1	1	1	Affinity Capture-RNA
PAF1	YBR279W	Component of the Paf1p complex involved in transcription elongation	physical	1	1	1	Affinity Capture-RNA
PPT2	YPL148C	Phosphopantetheine:protein transferase (PPTase)	physical	1	1	1	Affinity Capture-RNA
SWE1	YJL187C	Protein kinase that regulates the G2/M transition	genetic	1	1	1	Phenotypic Enhancement
YOR342C	YOR342C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SCT1	YBL011W	Glycerol 3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase	physical	1	1	1	Affinity Capture-RNA
MRPL50	YNR022C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
RSC8	YFR037C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
RSA1	YPL193W	Protein involved in the assembly of 60S ribosomal subunits	physical	1	1	1	Affinity Capture-RNA
MSW1	YDR268W	Mitochondrial tryptophanyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
SPB1	YCL054W	AdoMet-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
REX4	YOL080C	Putative RNA exonuclease	physical	1	1	1	Affinity Capture-RNA
TAM41	YGR046W	Mitochondrial phosphatidate cytidylyltransferase (CDP-DAG synthase)	physical	1	1	1	Affinity Capture-RNA
SAW1	YAL027W	5'- and 3'-flap DNA binding protein	physical	1	1	1	Affinity Capture-RNA
SLS1	YLR139C	Mitochondrial membrane protein	physical	1	1	1	Affinity Capture-RNA
WSC4	YHL028W	Endoplasmic reticulum (ER) membrane protein	physical	1	1	1	Affinity Capture-RNA
RTG3	YBL103C	bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways	physical	1	1	1	Affinity Capture-RNA
YCL002C	YCL002C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SRB6	YBR253W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
TRL1	YJL087C	tRNA ligase	physical	1	1	1	Affinity Capture-RNA
PFK27	YOL136C	6-phosphofructo-2-kinase	physical	1	1	1	Affinity Capture-RNA
PEX32	YBR168W	Peroxisomal integral membrane protein	physical	1	1	1	Affinity Capture-RNA
YAP7	YOL028C	Transcriptional repressor of nitric oxide oxidase	physical	1	1	1	Affinity Capture-RNA
PAC1	YOR269W	Regulator of dynein, involved in intracellular transport	physical	1	1	1	Affinity Capture-RNA
VAM3	YOR106W	Syntaxin-like vacuolar t-SNARE	physical	1	1	1	Affinity Capture-RNA
SSN8	YNL025C	Cyclin-like component of RNA polymerase II holoenzyme	physical	1	1	1	Affinity Capture-RNA
NSG2	YNL156C	Protein involved in regulation of sterol biosynthesis	physical	1	1	1	Affinity Capture-RNA
RPP2A	YOL039W	Ribosomal protein P2 alpha	physical	1	1	1	Affinity Capture-RNA
POC4	YPL144W	Component of a heterodimeric Poc4p-Irc25p chaperone	physical	1	1	1	Affinity Capture-RNA
RFC3	YNL290W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Affinity Capture-RNA
RSC3	YDR303C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
RRG7	YOR305W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SET3	YKR029C	Defining member of the SET3 histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
YGL176C	YGL176C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RIB7	YBR153W	Diaminohydroxyphoshoribosylaminopyrimidine deaminase	physical	1	1	1	Affinity Capture-RNA
SLX1	YBR228W	Endonuclease involved in DNA recombination and repair	physical	1	1	1	Affinity Capture-RNA
NIT1	YIL164C	Nitrilase	physical	1	1	1	Affinity Capture-RNA
RNH1	YMR234W	Ribonuclease H1	physical	1	1	1	Affinity Capture-RNA
TRR2	YHR106W	Mitochondrial thioredoxin reductase	physical	1	1	1	Affinity Capture-RNA
YHL008C	YHL008C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
POG1	YIL122W	DNA-binding transcriptional activator	physical	1	1	1	Affinity Capture-RNA
OCA2	YNL056W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SNF11	YDR073W	Subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
RPB10	YOR210W	RNA polymerase subunit ABC10-beta	physical	1	1	1	Affinity Capture-RNA
TDA11	YHR159W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PRP9	YDL030W	Subunit of the SF3a splicing factor complex	physical	1	1	1	Affinity Capture-RNA
YAF9	YNL107W	Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes	physical	1	1	1	Affinity Capture-RNA
SFI1	YLL003W	Centrin (Cdc31p)-binding protein required for SPB duplication	physical	1	1	1	Affinity Capture-RNA
YDR210W	YDR210W	Predicted tail-anchored plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
PEX12	YMR026C	C3HC4-type RING-finger peroxin and E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
UTP6	YDR449C	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
TEA1	YOR337W	Ty1 enhancer activator involved in Ty enhancer-mediated transcription	physical	1	1	1	Affinity Capture-RNA
MRH1	YDR033W	Protein that localizes primarily to the plasma membrane	physical	1	1	1	Affinity Capture-RNA
SPT20	YOL148C	Subunit of the SAGA transcriptional regulatory complex	physical	1	1	1	Affinity Capture-RNA
YUH1	YJR099W	Ubiquitin C-terminal hydrolase	physical	1	1	1	Affinity Capture-RNA
QCR6	YFR033C	Subunit 6 of the ubiquinol cytochrome-c reductase complex	physical	1	1	1	Affinity Capture-RNA
NEL1	YHR035W	Activator of Sar1p GTPase activity	physical	1	1	1	Affinity Capture-RNA
TAD2	YJL035C	Subunit of tRNA-specific adenosine-34 deaminase	physical	1	1	1	Affinity Capture-RNA
YPR071W	YPR071W	Putative membrane protein	physical	1	1	1	Affinity Capture-RNA
SPC34	YKR037C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
SNX41	YDR425W	Sorting nexin	physical	1	1	1	Affinity Capture-RNA
TBS1	YBR150C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YBR090C	YBR090C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VID27	YNL212W	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YJL206C	YJL206C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
OMS1	YDR316W	Protein integral to the mitochondrial membrane	physical	1	1	1	Affinity Capture-RNA
PTC6	YCR079W	Mitochondrial type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-RNA
YGR127W	YGR127W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPH1	YLR313C	Protein involved in shmoo formation and bipolar bud site selection	physical	1	1	1	Affinity Capture-RNA
RBH1	YJL181W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPB3	YIL021W	RNA polymerase II third largest subunit B44	physical	1	1	1	Affinity Capture-RNA
SEI1	YLR404W	Seipin involved in lipid droplet (LD) assembly	physical	1	1	1	Affinity Capture-RNA
RNH203	YLR154C	Ribonuclease H2 subunit	physical	1	1	1	Affinity Capture-RNA
YBR013C	YBR013C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SVL3	YPL032C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NRM1	YNR009W	Transcriptional co-repressor of MBF-regulated gene expression	physical	1	1	1	Affinity Capture-RNA
SSK1	YLR006C	Cytoplasmic phosphorelay intermediate osmosensor and regulator	physical	1	1	1	Affinity Capture-RNA
YLR407W	YLR407W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YOL014W	YOL014W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PRP3	YDR473C	Splicing factor	physical	1	1	1	Affinity Capture-RNA
YBR071W	YBR071W	Protein of unknown function found in the cytoplasm and bud neck	physical	1	1	1	Affinity Capture-RNA
TPO4	YOR273C	Polyamine transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
SFK1	YKL051W	Protein that regulates phospholipid asymmetry at plasma membrane	physical	1	1	1	Affinity Capture-RNA
YPT35	YHR105W	Endosomal protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MUM2	YBR057C	Protein essential for meiotic DNA replication and sporulation	physical	1	1	1	Affinity Capture-RNA
YNG2	YHR090C	Subunit of NuA4, an essential histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
PEX34	YCL056C	Protein that regulates peroxisome populations	physical	1	1	1	Affinity Capture-RNA
URN1	YPR152C	Protein of unknown function containing WW and FF domains	physical	1	1	1	Affinity Capture-RNA
SLD3	YGL113W	Protein involved in the initiation of DNA replication	physical	1	1	1	Affinity Capture-RNA
PIB1	YDR313C	RING-type ubiquitin ligase of the endosomal and vacuolar membranes	physical	1	1	1	Affinity Capture-RNA
YHR210C	YHR210C	Putative aldose 1-epimerase superfamily protein	physical	1	1	1	Affinity Capture-RNA
YCK3	YER123W	Palmitoylated vacuolar membrane-localized casein kinase I isoform	physical	1	1	1	Affinity Capture-RNA
TLG1	YDR468C	Essential t-SNARE that mediates fusion of vesicles with the late Golgi	physical	1	1	1	Affinity Capture-RNA
STE50	YCL032W	Adaptor protein for various signaling pathways	physical	1	1	1	Affinity Capture-RNA
SRB5	YGR104C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
VHS1	YDR247W	Cytoplasmic serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
YPT52	YKR014C	Endosomal Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
YPL039W	YPL039W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ROX1	YPR065W	Heme-dependent repressor of hypoxic genes	physical	1	1	1	Affinity Capture-RNA
YNL144C	YNL144C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RRP15	YPR143W	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
YNL234W	YNL234W	Protein of unknown function with similarity to globins	physical	1	1	1	Affinity Capture-RNA
MSN4	YKL062W	Stress-responsive transcriptional activator	physical	1	1	1	Affinity Capture-RNA
SYH1	YPL105C	Protein of unknown function that influences nuclear pore distribution	physical	1	1	1	Affinity Capture-RNA
YDL211C	YDL211C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RSM10	YDR041W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
NTG2	YOL043C	DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase	physical	1	1	1	Affinity Capture-RNA
YIA6	YIL006W	Mitochondrial NAD+ transporter	physical	1	1	1	Affinity Capture-RNA
RMD6	YEL072W	Protein required for sporulation	physical	1	1	1	Affinity Capture-RNA
YFH1	YDL120W	Mitochondrial matrix iron chaperone	physical	1	1	1	Affinity Capture-RNA
ORC6	YHR118C	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Affinity Capture-RNA
YPL247C	YPL247C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PCL5	YHR071W	Cyclin	physical	1	1	1	Affinity Capture-RNA
SLF1	YDR515W	RNA binding protein that associates with polysomes	physical	1	1	1	Affinity Capture-RNA
MSL1	YIR009W	U2B component of U2 snRNP	physical	1	1	1	Affinity Capture-RNA
YPL034W	YPL034W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
REF2	YDR195W	RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
THG1	YGR024C	tRNAHis guanylyltransferase	physical	1	1	1	Affinity Capture-RNA
YBR259W	YBR259W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TRS65	YGR166W	Component of transport protein particle (TRAPP) complex II	physical	1	1	1	Affinity Capture-RNA
NAM2	YLR382C	Mitochondrial leucyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
MRS2	YOR334W	Mitochondrial inner membrane Mg(2+) channel	physical	1	1	1	Affinity Capture-RNA
SPP381	YBR152W	mRNA splicing factor, component of U4/U6.U5 tri-snRNP	physical	1	1	1	Affinity Capture-RNA
PET20	YPL159C	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
SRL3	YKR091W	Repressor of transcription at Start	physical	1	1	1	Affinity Capture-RNA
PXR1	YGR280C	Essential protein involved in rRNA and snoRNA maturation	physical	1	1	1	Affinity Capture-RNA
OAZ1	YPL052W	Regulator of ornithine decarboxylase Spe1p	physical	1	1	1	Affinity Capture-RNA
RCF1	YML030W	Cytochrome c oxidase subunit	physical	1	1	1	Affinity Capture-RNA
VID22	YLR373C	G-quadruplex (G4) DNA binding protein	physical	1	1	1	Affinity Capture-RNA
MRPL38	YKL170W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL51	YPR100W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
PDL32	YMR087W	Putative ADP-ribose-1''-monophosphatase	physical	1	1	1	Affinity Capture-RNA
SPT2	YER161C	Protein involved in negative regulation of transcription	physical	1	1	1	Affinity Capture-RNA
RGL1	YPL066W	Regulator of Rho1p signaling, cofactor of Tus1p	physical	1	1	1	Affinity Capture-RNA
MPT5	YGL178W	mRNA-binding protein of the PUF family	physical	1	1	1	Affinity Capture-RNA
QRI5	YLR204W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
YML053C	YML053C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RAD57	YDR004W	Protein that stimulates strand exchange	physical	1	1	1	Affinity Capture-RNA
SWS2	YNL081C	Putative mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
TIM54	YJL054W	Component of the mitochondrial TIM22 complex	physical	1	1	1	Affinity Capture-RNA
RGI1	YER067W	Protein involved in energy metabolism under respiratory conditions	physical	1	1	1	Affinity Capture-RNA
SMN1	YHR202W	Putative AMP hydrolase	physical	1	1	1	Affinity Capture-RNA
PTH1	YHR189W	One of two mitochondrially-localized peptidyl-tRNA hydrolases	physical	1	1	1	Affinity Capture-RNA
SNU23	YDL098C	Component of the U4/U6.U5 snRNP complex	physical	1	1	1	Affinity Capture-RNA
YOR012W	YOR012W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SEN2	YLR105C	Subunit of the tRNA splicing endonuclease	physical	1	1	1	Affinity Capture-RNA
PBP2	YBR233W	RNA binding protein	physical	1	1	1	Affinity Capture-RNA
YLF2	YHL014C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ODC1	YPL134C	Mitochondrial inner membrane transporter	physical	1	1	1	Affinity Capture-RNA
YDL129W	YDL129W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YDR222W	YDR222W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SHU2	YDR078C	Component of Shu complex (aka PCSS complex)	physical	1	1	1	Affinity Capture-RNA
SPI1	YER150W	GPI-anchored cell wall protein involved in weak acid resistance	physical	1	1	1	Affinity Capture-RNA
PHM8	YER037W	Lysophosphatidic acid (LPA) phosphatase, nucleotidase	physical	1	1	1	Affinity Capture-RNA
TIP41	YPR040W	Tap42p-interacting protein	physical	1	1	1	Affinity Capture-RNA
VID24	YBR105C	GID Complex regulatory subunit	physical	1	1	1	Affinity Capture-RNA
PAC2	YER007W	Microtubule effector required for tubulin heterodimer formation	physical	1	1	1	Affinity Capture-RNA
YPL071C	YPL071C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SEF1	YBL066C	Putative transcription factor	physical	1	1	1	Affinity Capture-RNA
NVJ3	YDR179W-A	Protein with a potential role in tethering ER and vacuoles	physical	1	1	1	Affinity Capture-RNA
TMA23	YMR269W	Nucleolar protein implicated in ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
NSE4	YDL105W	Component of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
YPK3	YBR028C	AGC kinase	physical	1	1	1	Affinity Capture-RNA
NUT2	YPR168W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
YDL206W	YDL206W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRPS18	YNL306W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
TSC10	YBR265W	3-ketosphinganine reductase	physical	1	1	1	Affinity Capture-RNA
PRP38	YGR075C	Unique component of the U4/U6.U5 tri-snRNP particle	physical	1	1	1	Affinity Capture-RNA
PET100	YDR079W	Chaperone that facilitates the assembly of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
POL32	YJR043C	Third subunit of DNA polymerase delta	physical	1	1	1	Affinity Capture-RNA
SWP82	YFL049W	Member of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
YBL081W	YBL081W	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YBR238C	YBR238C	Mitochondrial membrane protein	physical	1	1	1	Affinity Capture-RNA
TOD6	YBL054W	PAC motif binding protein involved in rRNA and ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
MRX15	YNR040W	Membrane-associated mitoribosome receptor	physical	1	1	1	Affinity Capture-RNA
POP7	YBR167C	Subunit of RNase MRP, nuclear RNase P and telomerase	physical	1	1	1	Affinity Capture-RNA
YPT11	YNL304W	Rab GTPase	physical	1	1	1	Affinity Capture-RNA
SAS5	YOR213C	Subunit of the SAS complex (Sas2p, Sas4p, Sas5p)	physical	1	1	1	Affinity Capture-RNA
THI80	YOR143C	Thiamine pyrophosphokinase	physical	1	1	1	Affinity Capture-RNA
VPS64	YDR200C	Protein required for cytoplasm to vacuole targeting of proteins	physical	1	1	1	Affinity Capture-RNA
TRX3	YCR083W	Mitochondrial thioredoxin	physical	1	1	1	Affinity Capture-RNA
POP3	YNL282W	Subunit of both RNase MRP and nuclear RNase P	physical	1	1	1	Affinity Capture-RNA
PRP24	YMR268C	Splicing factor that reanneals snRNPs during spliceosome recycling	physical	1	1	1	Affinity Capture-RNA
SNT309	YPR101W	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
STE12	YHR084W	Transcription factor that is activated by a MAPK signaling cascade	physical	1	1	1	Affinity Capture-RNA
YGR079W	YGR079W	Protein of unknown function	genetic	1	1	1	Negative Genetic
MRX14	YDR115W	Putative mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
TRP3	YKL211C	Indole-3-glycerol-phosphate synthase	physical	1	1	1	Affinity Capture-RNA
YPT6	YLR262C	Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
RAD18	YCR066W	E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
RAD52	YML032C	Protein involved in homologous recombination	physical	1	1	1	Affinity Capture-RNA
MTO1	YGL236C	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
SMT1	YJL147C	Translational repressor of the mitochondrial ATP6/8 mRNA	physical	1	1	1	Affinity Capture-RNA
RPL37A	YLR185W	Ribosomal 60S subunit protein L37A	physical	1	1	1	Affinity Capture-RNA
PFY1	YOR122C	Profilin	physical	1	1	1	Affinity Capture-RNA
TAD3	YLR316C	Subunit of tRNA-specific adenosine-34 deaminase	physical	1	1	1	Affinity Capture-RNA
RPL33B	YOR234C	Ribosomal 60S subunit protein L33B	physical	1	1	1	Affinity Capture-RNA
YGR035C	YGR035C	Putative protein of unknown function, potential Cdc28p substrate	physical	1	1	1	Affinity Capture-RNA
TRI1	YMR233W	Non-essential sumoylated protein of unknown function	physical	1	1	1	Affinity Capture-RNA
URA10	YMR271C	Minor orotate phosphoribosyltransferase (OPRTase) isozyme	physical	1	1	1	Affinity Capture-RNA
NTR2	YKR022C	Essential protein that forms a dimer with Ntr1p	physical	1	1	1	Affinity Capture-RNA
YIR042C	YIR042C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
OST4	YDL232W	Subunit of the oligosaccharyltransferase complex of the ER lumen	physical	1	1	1	Affinity Capture-RNA
PUT7	YLR283W	Regulator of mitochondrial proline metabolism	physical	1	1	1	Affinity Capture-RNA
SFL1	YOR140W	Transcriptional repressor and activator	physical	1	1	1	Affinity Capture-RNA
RRN11	YML043C	Component of the core factor (CF) rDNA transcription factor complex	physical	1	1	1	Affinity Capture-RNA
RPC10	YHR143W-A	RNA polymerase subunit ABC10-alpha, found in RNA pol I, II, and III	physical	1	1	1	Affinity Capture-RNA
SWI6	YLR182W	Transcription cofactor	genetic	1	1	1	Synthetic Lethality
RRG9	YNL213C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RMR1	YGL250W	Protein required for meiotic recombination and gene conversion	physical	1	1	1	Affinity Capture-RNA
SKN1	YGR143W	Protein involved in sphingolipid biosynthesis	physical	1	1	1	Affinity Capture-RNA
YGL185C	YGL185C	Putative protein with sequence similar to hydroxyacid dehydrogenases	physical	1	1	1	Affinity Capture-RNA
RPI1	YIL119C	Transcription factor, allelic differences between S288C and Sigma1278b	physical	1	1	1	Affinity Capture-RNA
YJR154W	YJR154W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MTC6	YHR151C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TOS3	YGL179C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
PEX22	YAL055W	Putative peroxisomal membrane protein	physical	1	1	1	Affinity Capture-RNA
NAM8	YHR086W	RNA binding protein, component of the U1 snRNP protein	physical	1	1	1	Affinity Capture-RNA
RGS2	YOR107W	Negative regulator of glucose-induced cAMP signaling	physical	1	1	1	Affinity Capture-RNA
PUN1	YLR414C	Plasma membrane protein with a role in cell wall integrity	physical	1	1	1	Affinity Capture-RNA
SFG1	YOR315W	Nuclear protein putative transcription factor	physical	1	1	1	Affinity Capture-RNA
YDL177C	YDL177C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VAC17	YCL063W	Phosphoprotein involved in vacuole inheritance	physical	1	1	1	Affinity Capture-RNA
TOS2	YGR221C	Protein involved in localization of Cdc24p to the site of bud growth	physical	1	1	1	Affinity Capture-RNA
NDL1	YLR254C	Homolog of nuclear distribution factor NudE	physical	1	1	1	Affinity Capture-RNA
TAX4	YJL083W	EH domain-containing protein	physical	1	1	1	Affinity Capture-RNA
RPL26B	YGR034W	Ribosomal 60S subunit protein L26B	physical	1	1	1	Affinity Capture-RNA
YHB1	YGR234W	Nitric oxide oxidoreductase	physical	1	1	1	Affinity Capture-RNA
RPS16B	YDL083C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TPK3	YKL166C	cAMP-dependent protein kinase catalytic subunit	physical	1	1	1	Affinity Capture-RNA
SEC53	YFL045C	Phosphomannomutase	physical	1	1	1	Affinity Capture-RNA
PHO84	YML123C	High-affinity inorganic phosphate (Pi) transporter	physical	1	1	1	Affinity Capture-RNA
RPS9A	YPL081W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TRM2	YKR056W	tRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
PKR1	YMR123W	V-ATPase assembly factor	physical	1	1	1	Affinity Capture-RNA
RPS16A	YMR143W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YDR524C-B	YDR524C-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPL1A	YPL220W	Ribosomal 60S subunit protein L1A	physical	1	1	1	Affinity Capture-RNA
SEC63	YOR254C	Essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-RNA
SHM2	YLR058C	Cytosolic serine hydroxymethyltransferase	physical	1	1	1	Affinity Capture-RNA
RPS14A	YCR031C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS30B	YOR182C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPL40B	YKR094C	Ubiquitin-ribosomal 60S subunit protein L40B fusion protein	physical	1	1	1	Affinity Capture-RNA
RPL8A	YHL033C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Affinity Capture-RNA
TNA1	YGR260W	High affinity nicotinic acid plasma membrane permease	physical	1	1	1	Affinity Capture-RNA
SAC6	YDR129C	Fimbrin, actin-bundling protein	physical	1	1	1	Affinity Capture-RNA
SSH1	YBR283C	Subunit of the Ssh1 translocon complex	physical	1	1	1	Affinity Capture-RNA
RPL38	YLR325C	Ribosomal 60S subunit protein L38	physical	1	1	1	Affinity Capture-RNA
RPL26A	YLR344W	Ribosomal 60S subunit protein L26A	physical	1	1	1	Affinity Capture-RNA
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	1	1	1	Affinity Capture-RNA
VTC1	YER072W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Affinity Capture-RNA
RPL19B	YBL027W	Ribosomal 60S subunit protein L19B	physical	1	1	1	Affinity Capture-RNA
RPS24B	YIL069C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
RPL18B	YNL301C	Ribosomal 60S subunit protein L18B	physical	1	1	1	Affinity Capture-RNA
RNR1	YER070W	Major isoform of large subunit of ribonucleotide-diphosphate reductase	physical	1	1	1	Affinity Capture-RNA
SAC7	YDR389W	GTPase activating protein (GAP) for Rho1p	physical	1	1	1	Affinity Capture-RNA
UBC9	YDL064W	SUMO-conjugating enzyme involved in the Smt3p conjugation pathway	physical	1	1	1	Affinity Capture-RNA
PRE1	YER012W	Beta 4 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
RPO31	YOR116C	RNA polymerase III largest subunit C160	physical	1	1	1	Affinity Capture-RNA
RPL19A	YBR084C-A	Ribosomal 60S subunit protein L19A	physical	1	1	1	Affinity Capture-RNA
WRS1	YOL097C	Cytoplasmic tryptophanyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
SAM2	YDR502C	S-adenosylmethionine synthetase	physical	1	1	1	Affinity Capture-RNA
UTH1	YKR042W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
RPA34	YJL148W	RNA polymerase I subunit A34.5	physical	1	1	1	Affinity Capture-RNA
NUP57	YGR119C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-RNA
NUP57	YGR119C	FG-nucleoporin component of central core of the nuclear pore complex	genetic	1	1	1	Negative Genetic
YTM1	YOR272W	Ribosomal assembly factor and 66S pre-ribosomal particle constituent	physical	1	1	1	Affinity Capture-RNA
TCB2	YNL087W	ER protein involved in ER-plasma membrane tethering	physical	1	1	1	Affinity Capture-RNA
RIM1	YCR028C-A	ssDNA-binding protein essential for mitochondrial genome maintenance	physical	1	1	1	Affinity Capture-RNA
RPS23B	YPR132W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPL41A	YDL184C	Ribosomal 60S subunit protein L41A	physical	1	1	1	Affinity Capture-RNA
SUR2	YDR297W	Sphinganine C4-hydroxylase	physical	1	1	1	Affinity Capture-RNA
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPL43B	YJR094W-A	Ribosomal 60S subunit protein L43B	physical	1	1	1	Affinity Capture-RNA
RPL43B	YJR094W-A	Ribosomal 60S subunit protein L43B	genetic	1	1	1	Synthetic Rescue
TPA1	YER049W	Prolyl hydroxylase	physical	1	1	1	Affinity Capture-RNA
YGR210C	YGR210C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPL18A	YOL120C	Ribosomal 60S subunit protein L18A	physical	1	1	1	Affinity Capture-RNA
PBI2	YNL015W	Cytosolic inhibitor of vacuolar proteinase B (PRB1)	physical	1	1	1	Affinity Capture-RNA
SMX2	YFL017W-A	Core Sm protein Sm G	physical	1	1	1	Affinity Capture-RNA
RVB1	YDR190C	ATP-dependent DNA helicase, also known as pontin	physical	1	1	1	Affinity Capture-RNA
SRP72	YPL210C	Core component of the signal recognition particle (SRP)	physical	1	1	1	Affinity Capture-RNA
NPL6	YMR091C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
RPL17A	YKL180W	Ribosomal 60S subunit protein L17A	physical	1	1	1	Affinity Capture-RNA
RPS9B	YBR189W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	1	1	1	Affinity Capture-RNA
PWP2	YCR057C	Conserved 90S pre-ribosomal component	physical	1	1	1	Affinity Capture-RNA
RPL8B	YLL045C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Affinity Capture-RNA
NOC2	YOR206W	Protein involved in ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
RPL34A	YER056C-A	Ribosomal 60S subunit protein L34A	physical	1	1	1	Affinity Capture-RNA
YOR283W	YOR283W	Phosphatase with a broad substrate specificity	physical	1	1	1	Affinity Capture-RNA
RPL14A	YKL006W	Ribosomal 60S subunit protein L14A	physical	1	1	1	Affinity Capture-RNA
RPL14A	YKL006W	Ribosomal 60S subunit protein L14A	genetic	1	1	1	Negative Genetic
TIP1	YBR067C	Major cell wall mannoprotein with possible lipase activity	physical	1	1	1	Affinity Capture-RNA
TAN1	YGL232W	Putative tRNA acetyltransferase	physical	1	1	1	Affinity Capture-RNA
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	physical	1	1	1	Affinity Capture-RNA
SND3	YBR106W	Involved in SRP-independent protein targeting to the ER	physical	1	1	1	Affinity Capture-RNA
RSM26	YJR101W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
RSC1	YGR056W	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
YCG1	YDR325W	Subunit of the condensin complex	physical	1	1	1	Affinity Capture-RNA
UTP20	YBL004W	Component of the small-subunit (SSU) processome	physical	1	1	1	Affinity Capture-RNA
RPB2	YOR151C	RNA polymerase II second largest subunit B150	physical	1	1	1	Affinity Capture-RNA
RLP7	YNL002C	Nucleolar protein similar to large ribosomal subunit L7 proteins	physical	1	1	1	Affinity Capture-RNA
SKG6	YHR149C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
RRP1	YDR087C	Essential evolutionarily conserved nucleolar protein	physical	1	1	1	Affinity Capture-RNA
RPL16A	YIL133C	Ribosomal 60S subunit protein L16A	physical	1	1	1	Affinity Capture-RNA
PGM1	YKL127W	Phosphoglucomutase, minor isoform	physical	1	1	1	Affinity Capture-RNA
RLI1	YDR091C	Essential Fe-S protein	physical	1	1	1	Affinity Capture-RNA
YIP3	YNL044W	Protein localized to COPII vesicles	physical	1	1	1	Affinity Capture-RNA
RPL12A	YEL054C	Ribosomal 60S subunit protein L12A	physical	1	1	1	Affinity Capture-RNA
YLR363W-A	YLR363W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
XPT1	YJR133W	Xanthine-guanine phosphoribosyl transferase	physical	1	1	1	Affinity Capture-RNA
NCB2	YDR397C	Subunit of a heterodimeric NC2 transcription regulator complex	physical	1	1	1	Affinity Capture-RNA
TRM82	YDR165W	Noncatalytic subunit of a tRNA methyltransferase complex	physical	1	1	1	Affinity Capture-RNA
SKI8	YGL213C	Ski complex component and WD-repeat protein	physical	1	1	1	Affinity Capture-RNA
MYO5	YMR109W	One of two type I myosin motors	physical	1	1	1	Affinity Capture-RNA
RPL36A	YMR194W	Ribosomal 60S subunit protein L36A	physical	1	1	1	Affinity Capture-RNA
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	physical	1	1	1	Affinity Capture-RNA
PRO2	YOR323C	Gamma-glutamyl phosphate reductase	physical	1	1	1	Affinity Capture-RNA
RPL5	YPL131W	Ribosomal 60S subunit protein L5	physical	1	1	1	Affinity Capture-RNA
TAF14	YPL129W	Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes	physical	1	1	1	Affinity Capture-RNA
RPL13B	YMR142C	Ribosomal 60S subunit protein L13B	physical	1	1	1	Affinity Capture-RNA
RPS24A	YER074W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS24A	YER074W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
TOM22	YNL131W	Component of the TOM (Translocase of Outer Membrane) complex	physical	1	1	1	Affinity Capture-RNA
RPL23B	YER117W	Ribosomal 60S subunit protein L23B	physical	1	1	1	Affinity Capture-RNA
RPL31A	YDL075W	Ribosomal 60S subunit protein L31A	physical	1	1	1	Affinity Capture-RNA
PAB1	YER165W	Poly(A) binding protein	physical	1	1	1	Affinity Capture-RNA
RGD1	YBR260C	GTPase-activating protein (RhoGAP) for Rho3p and Rho4p	physical	1	1	1	Affinity Capture-RNA
YDR415C	YDR415C	Putative aminopeptidase	physical	1	1	1	Affinity Capture-RNA
RPL33A	YPL143W	Ribosomal 60S subunit protein L33A	physical	1	1	1	Affinity Capture-RNA
TMA19	YKL056C	Protein that associates with ribosomes	physical	1	1	1	Affinity Capture-RNA
RPS5	YJR123W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
STU1	YBL034C	Microtubule plus-end-tracking non-motor protein	physical	1	1	1	Affinity Capture-RNA
RPS29A	YLR388W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SFH5	YJL145W	Unusual phosphatidylinositol transfer protein (PITP) that binds heme	physical	1	1	1	Affinity Capture-RNA
SEC62	YPL094C	Essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-RNA
YEF3	YLR249W	Translation elongation factor 3	physical	1	1	1	Affinity Capture-RNA
YKL033W-A	YKL033W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPO26	YPR187W	RNA polymerase subunit ABC23	physical	1	1	1	Affinity Capture-RNA
SOF1	YLL011W	Protein required for biogenesis of 40S (small) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS11A	YDR025W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RAI1	YGL246C	Nuclear decapping endonuclease	physical	1	1	1	Affinity Capture-RNA
VMA9	YCL005W-A	Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex	physical	1	1	1	Affinity Capture-RNA
MRP51	YPL118W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YDR476C	YDR476C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NBP1	YLR457C	Spindle pole body (SPB) component	physical	1	1	1	Affinity Capture-RNA
SLA1	YBL007C	Cytoskeletal protein binding protein	physical	1	1	1	Affinity Capture-RNA
OSH7	YHR001W	Oxysterol-binding phosphatidylserine transferase	physical	1	1	1	Affinity Capture-RNA
YJR011C	YJR011C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPE2	YOL052C	S-adenosylmethionine decarboxylase	physical	1	1	1	Affinity Capture-RNA
SDS3	YIL084C	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
PYP1	YNL010W	Sugar alcohol phosphatase	physical	1	1	1	Affinity Capture-RNA
RPS25A	YGR027C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Affinity Capture-RNA
ZUO1	YGR285C	Ribosome-associated chaperone	physical	1	1	1	Affinity Capture-RNA
SPT6	YGR116W	Nucleosome remodeling protein	physical	1	1	1	Affinity Capture-RNA
PYC2	YBR218C	Pyruvate carboxylase isoform	physical	1	1	1	Affinity Capture-RNA
STE18	YJR086W	G protein gamma subunit	physical	1	1	1	Affinity Capture-RNA
SEC18	YBR080C	AAA ATPase and SNARE disassembly chaperone	physical	1	1	1	Affinity Capture-RNA
TEF4	YKL081W	Gamma subunit of translational elongation factor eEF1B	physical	1	1	1	Affinity Capture-RNA
RDI1	YDL135C	Rho GDP dissociation inhibitor	physical	1	1	1	Affinity Capture-RNA
POR1	YNL055C	Mitochondrial porin (voltage-dependent anion channel)	physical	1	1	1	Affinity Capture-RNA
RPL1B	YGL135W	Ribosomal 60S subunit protein L1B	physical	1	1	1	Affinity Capture-RNA
RPA135	YPR010C	RNA polymerase I second largest subunit A135	physical	1	1	1	Affinity Capture-RNA
OST5	YGL226C-A	Zeta subunit of the oligosaccharyltransferase complex of the ER lumen	physical	1	1	1	Affinity Capture-RNA
RPN7	YPR108W	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	1	1	1	Affinity Capture-RNA
RPN7	YPR108W	Essential non-ATPase regulatory subunit of the 26S proteasome	genetic	1	1	1	Negative Genetic
TSA1	YML028W	Thioredoxin peroxidase	physical	1	1	1	Affinity Capture-RNA
TRK2	YKR050W	Component of the Trk1p-Trk2p potassium transport system	physical	1	1	1	Affinity Capture-RNA
NHP6B	YBR089C-A	High-mobility group (HMG) protein	physical	1	1	1	Affinity Capture-RNA
OLA1	YBR025C	P-loop ATPase with similarity to human OLA1 and bacterial YchF	physical	1	1	1	Affinity Capture-RNA
NGL1	YOL042W	Putative endonuclease	physical	1	1	1	Affinity Capture-RNA
RAD23	YEL037C	Protein with ubiquitin-like N terminus	physical	1	1	1	Affinity Capture-RNA
POL5	YEL055C	Protein involved in 60S assembly and pre-40S AFs recycling	physical	1	1	1	Affinity Capture-RNA
PDB1	YBR221C	E1 beta subunit of the pyruvate dehydrogenase (PDH) complex	physical	1	1	1	Affinity Capture-RNA
TSR2	YLR435W	Protein with a potential role in pre-rRNA processing	physical	1	1	1	Affinity Capture-RNA
TRA1	YHR099W	Subunit of SAGA and NuA4 histone acetyltransferase complexes	physical	1	1	1	Affinity Capture-RNA
YBL086C	YBL086C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YIP4	YGL198W	Protein that interacts with Rab GTPases	physical	1	1	1	Affinity Capture-RNA
RPL9B	YNL067W	Ribosomal 60S subunit protein L9B	physical	1	1	1	Affinity Capture-RNA
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-RNA
YPT1	YFL038C	Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
YCR016W	YCR016W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YTP1	YNL237W	Probable type-III integral membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SAP30	YMR263W	Component of Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
TOF1	YNL273W	Subunit of a replication-pausing checkpoint complex	physical	1	1	1	Affinity Capture-RNA
YBL055C	YBL055C	3'-->5' exonuclease and endonuclease with a possible role in apoptosis	physical	1	1	1	Affinity Capture-RNA
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	physical	1	1	1	Affinity Capture-RNA
PRE3	YJL001W	Beta 1 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
POM33	YLL023C	Transmembrane nucleoporin	physical	1	1	1	Affinity Capture-RNA
RPL34B	YIL052C	Ribosomal 60S subunit protein L34B	physical	1	1	1	Affinity Capture-RNA
RPA14	YDR156W	RNA polymerase I subunit A14	physical	1	1	1	Affinity Capture-RNA
NOP7	YGR103W	Component of several different pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
RPS4A	YJR145C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RFA1	YAR007C	Subunit of heterotrimeric Replication Protein A (RPA)	physical	1	1	1	Affinity Capture-RNA
TIM9	YEL020W-A	Essential protein of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
PRP21	YJL203W	Subunit of the SF3a splicing factor complex	physical	1	1	1	Affinity Capture-RNA
TDH2	YJR009C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2	physical	1	1	1	Affinity Capture-RNA
NSR1	YGR159C	Nucleolin, nucleolar protein that binds nuclear localization sequences	physical	1	1	1	Affinity Capture-RNA
RIB3	YDR487C	3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase)	physical	1	1	1	Affinity Capture-RNA
RCE1	YMR274C	Type II CAAX prenyl protease	physical	1	1	1	Affinity Capture-RNA
PDC1	YLR044C	Major of three pyruvate decarboxylase isozymes	physical	1	1	1	Affinity Capture-RNA
MRX16	YDR132C	Protein that associates with the large mitoribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TYS1	YGR185C	Cytoplasmic tyrosyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
SIS1	YNL007C	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p	physical	1	1	1	Affinity Capture-RNA
PMT2	YAL023C	Protein O-mannosyltransferase of the ER membrane	physical	1	1	1	Affinity Capture-RNA
SEG1	YMR086W	Component of eisosome required for proper eisosome assembly	physical	1	1	1	Affinity Capture-RNA
SUP45	YBR143C	Polypeptide release factor (eRF1) in translation termination	physical	1	1	1	Affinity Capture-RNA
NOP13	YNL175C	Nucleolar protein found in preribosomal complexes	physical	1	1	1	Affinity Capture-RNA
YLR285C-A	YLR285C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MSN5	YDR335W	Karyopherin	physical	1	1	1	Affinity Capture-RNA
NNT1	YLR285W	S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
NVJ2	YPR091C	Lipid-binding ER protein, enriched at nucleus-vacuolar junctions (NVJ)	physical	1	1	1	Affinity Capture-RNA
MVD1	YNR043W	Mevalonate pyrophosphate decarboxylase	physical	1	1	1	Affinity Capture-RNA
SRV2	YNL138W	CAP (cyclase-associated protein)	physical	1	1	1	Affinity Capture-RNA
SAH1	YER043C	S-adenosyl-L-homocysteine hydrolase	physical	1	1	1	Affinity Capture-RNA
SAM1	YLR180W	S-adenosylmethionine synthetase	physical	1	1	1	Affinity Capture-RNA
RPS2	YGL123W	Protein component of the small (40S) subunit	physical	1	1	1	Affinity Capture-RNA
RTN1	YDR233C	Reticulon protein	physical	1	1	1	Affinity Capture-RNA
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	physical	1	1	1	Affinity Capture-RNA
PSD1	YNL169C	Phosphatidylserine decarboxylase of the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
YOR296W	YOR296W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRPL44	YMR225C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
NOT5	YPR072W	Component of the CCR4-NOT core complex, involved in mRNA decapping	physical	1	1	1	Affinity Capture-RNA
TRR1	YDR353W	Cytoplasmic thioredoxin reductase	physical	1	1	1	Affinity Capture-RNA
NOP4	YPL043W	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
PHO12	YHR215W	One of three repressible acid phosphatases	physical	1	1	1	Affinity Capture-RNA
TVP15	YDR100W	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
SEM1	YDR363W-A	19S proteasome regulatory particle lid subcomplex component	physical	1	1	1	Affinity Capture-RNA
SLM2	YNL047C	Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p	physical	1	1	1	Affinity Capture-RNA
NSA2	YER126C	Protein constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
NMD3	YHR170W	Protein involved in nuclear export of the large ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TUB4	YLR212C	Gamma-tubulin	physical	1	1	1	Affinity Capture-RNA
RPS23A	YGR118W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YDJ1	YNL064C	Type I HSP40 co-chaperone	physical	1	1	1	Affinity Capture-RNA
RRP5	YMR229C	RNA binding protein involved in synthesis of 18S and 5.8S rRNAs	physical	1	1	1	Affinity Capture-RNA
RPS21B	YJL136C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SYP1	YCR030C	Negative regulator of WASP-Arp23 complex	physical	1	1	1	Affinity Capture-RNA
MSH6	YDR097C	Protein required for mismatch repair in mitosis and meiosis	physical	1	1	1	Affinity Capture-RNA
OSH2	YDL019C	Member of an oxysterol-binding protein family with seven members	physical	1	1	1	Affinity Capture-RNA
PIL1	YGR086C	Eisosome core component	physical	1	1	1	Affinity Capture-RNA
TIF4631	YGR162W	Translation initiation factor eIF4G and scaffold protein	physical	1	1	1	Affinity Capture-RNA
SRP1	YNL189W	Karyopherin alpha homolog	physical	1	1	1	Affinity Capture-RNA
YLR036C	YLR036C	Putative protein predicted to have transmembrane domains	physical	1	1	1	Affinity Capture-RNA
RPL35B	YDL136W	Ribosomal 60S subunit protein L35B	physical	1	1	1	Affinity Capture-RNA
SPF1	YEL031W	P-type ATPase, ion transporter of the ER membrane	physical	1	1	1	Affinity Capture-RNA
TRM3	YDL112W	2'-O-ribose methyltransferase	physical	1	1	1	Affinity Capture-RNA
RPL23A	YBL087C	Ribosomal 60S subunit protein L23A	physical	1	1	1	Affinity Capture-RNA
RPL7A	YGL076C	Ribosomal 60S subunit protein L7A	physical	1	1	1	Affinity Capture-RNA
PDS5	YMR076C	Cohesion maintenance factor	physical	1	1	1	Affinity Capture-RNA
NUC1	YJL208C	Major mitochondrial nuclease	physical	1	1	1	Affinity Capture-RNA
SHR5	YOL110W	Palmitoyltransferase subunit	physical	1	1	1	Affinity Capture-RNA
PRO3	YER023W	Delta 1-pyrroline-5-carboxylate reductase	physical	1	1	1	Affinity Capture-RNA
SUB2	YDL084W	Component of the TREX complex required for nuclear mRNA export	physical	1	1	1	Affinity Capture-RNA
PEP1	YBL017C	Type I transmembrane sorting receptor for multiple vacuolar hydrolases	physical	1	1	1	Affinity Capture-RNA
SSA2	YLL024C	HSP70 family ATP-binding protein	physical	1	1	1	Affinity Capture-RNA
MRP1	YDR347W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
SBA1	YKL117W	Co-chaperone that binds and regulates Hsp90 family chaperones	physical	1	1	1	Affinity Capture-RNA
UTP8	YGR128C	Nucleolar protein required for export of tRNAs from the nucleus	physical	1	1	1	Affinity Capture-RNA
NPT1	YOR209C	Nicotinate phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
YKL068W-A	YKL068W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPS22A	YJL190C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS18B	YML026C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YTA6	YPL074W	Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family	physical	1	1	1	Affinity Capture-RNA
NCS2	YNL119W	Protein required for uridine thiolation of Lys(UUU) and Glu(UUC) tRNAs	physical	1	1	1	Affinity Capture-RNA
YLR287C	YLR287C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PWP1	YLR196W	Protein with WD-40 repeats involved in rRNA processing	physical	1	1	1	Affinity Capture-RNA
RPL20B	YOR312C	Ribosomal 60S subunit protein L20B	physical	1	1	1	Affinity Capture-RNA
NCW1	YMR122W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VTC4	YJL012C	Vacuolar membrane polyphosphate polymerase	physical	1	1	1	Affinity Capture-RNA
RPP1A	YDL081C	Ribosomal stalk protein P1 alpha	physical	1	1	1	Affinity Capture-RNA
RPL20A	YMR242C	Ribosomal 60S subunit protein L20A	physical	1	1	1	Affinity Capture-RNA
SIR3	YLR442C	Silencing protein	physical	1	1	1	Affinity Capture-RNA
SIR3	YLR442C	Silencing protein	genetic	1	1	1	Synthetic Rescue
PMT1	YDL095W	Protein O-mannosyltransferase of the ER membrane	physical	1	1	1	Affinity Capture-RNA
SSC1	YJR045C	Hsp70 family ATPase	physical	1	1	1	Affinity Capture-RNA
STT4	YLR305C	Phosphatidylinositol-4-kinase	physical	1	1	1	Affinity Capture-RNA
PCC1	YKR095W-A	Component of the EKC/KEOPS protein complex	physical	1	1	1	Affinity Capture-RNA
SCH9	YHR205W	AGC family protein kinase	physical	1	1	1	Affinity Capture-RNA
RPL13A	YDL082W	Ribosomal 60S subunit protein L13A	physical	1	1	1	Affinity Capture-RNA
RPP1B	YDL130W	Ribosomal protein P1 beta	physical	1	1	1	Affinity Capture-RNA
SDH3	YKL141W	Subunit of succinate dehydrogenase and of TIM22 translocase	physical	1	1	1	Affinity Capture-RNA
TRM9	YML014W	tRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
SBH1	YER087C-B	Beta subunit of Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p)	physical	1	1	1	Affinity Capture-RNA
SOM1	YEL059C-A	Subunit of the mitochondrial inner membrane peptidase (IMP)	physical	1	1	1	Affinity Capture-RNA
SCY1	YGL083W	Putative kinase	physical	1	1	1	Affinity Capture-RNA
YDR003W-A	YDR003W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ORT1	YOR130C	Ornithine transporter of the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
ZPR1	YGR211W	Essential protein with two zinc fingers	physical	1	1	1	Affinity Capture-RNA
YMR317W	YMR317W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SNF5	YBR289W	Subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
YCR024C-B	YCR024C-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNR021W	YNR021W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
OXA1	YER154W	Mitochondrial inner membrane insertase	physical	1	1	1	Affinity Capture-RNA
RPS28B	YLR264W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
VTA1	YLR181C	Multivesicular body (MVB) protein	physical	1	1	1	Affinity Capture-RNA
SEC22	YLR268W	R-SNARE protein	physical	1	1	1	Affinity Capture-RNA
YIP1	YGR172C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
SEC1	YDR164C	Sm-like protein involved in docking and fusion of exocytic vesicles	physical	1	1	1	Affinity Capture-RNA
SPN1	YPR133C	Protein involved in RNA polymerase II transcription	physical	1	1	1	Affinity Capture-RNA
RPL12B	YDR418W	Ribosomal 60S subunit protein L12B	physical	1	1	1	Affinity Capture-RNA
OXR1	YPL196W	Protein involved in regulation of vacuolar V-ATPase	physical	1	1	1	Affinity Capture-RNA
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TAE1	YBR261C	AdoMet-dependent proline methyltransferase	physical	1	1	1	Affinity Capture-RNA
RPL2B	YIL018W	Ribosomal 60S subunit protein L2B	physical	1	1	1	Affinity Capture-RNA
VMA2	YBR127C	Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase	physical	1	1	1	Affinity Capture-RNA
PRY1	YJL079C	Lipid binding protein	physical	1	1	1	Affinity Capture-RNA
YDL086W	YDL086W	Putative carboxymethylenebutenolidase	physical	1	1	1	Affinity Capture-RNA
TIF3	YPR163C	Translation initiation factor eIF-4B	physical	1	1	1	Affinity Capture-RNA
THR1	YHR025W	Homoserine kinase	physical	1	1	1	Affinity Capture-RNA
YDR248C	YDR248C	Putative gluconokinase	physical	1	1	1	Affinity Capture-RNA
TFB6	YOR352W	Subunit of TFIIH complex	physical	1	1	1	Affinity Capture-RNA
PAM17	YKR065C	Constituent of the TIM23 complex	physical	1	1	1	Affinity Capture-RNA
RPP2B	YDR382W	Ribosomal protein P2 beta	physical	1	1	1	Affinity Capture-RNA
RPP2B	YDR382W	Ribosomal protein P2 beta	genetic	1	1	1	Negative Genetic
RPS6A	YPL090C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
UBC1	YDR177W	Ubiquitin-conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	physical	1	1	1	Affinity Capture-RNA
OSH3	YHR073W	Member of an oxysterol-binding protein family	physical	1	1	1	Affinity Capture-RNA
SER1	YOR184W	3-phosphoserine aminotransferase	physical	1	1	1	Affinity Capture-RNA
RSN1	YMR266W	Membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
THS1	YIL078W	Threonyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
PRT1	YOR361C	eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	physical	1	1	1	Affinity Capture-RNA
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	physical	1	1	1	Affinity Capture-RNA
RPS1B	YML063W	Ribosomal protein of the small (40S) subunit	physical	1	1	1	Affinity Capture-RNA
NNF1	YJR112W	Essential component of the outer kinetochore MIND complex	physical	1	1	1	Affinity Capture-RNA
RPL7B	YPL198W	Ribosomal 60S subunit protein L7B	physical	1	1	1	Affinity Capture-RNA
RHO1	YPR165W	GTP-binding protein of the rho subfamily of Ras-like proteins	physical	1	1	1	Affinity Capture-RNA
UTP22	YGR090W	Component of the small-subunit processome	physical	1	1	1	Affinity Capture-RNA
SGV1	YPR161C	Cyclin (Bur2p)-dependent protein kinase	physical	1	1	1	Affinity Capture-RNA
TEF2	YBR118W	Translational elongation factor EF-1 alpha	physical	1	1	1	Affinity Capture-RNA
RPS8A	YBL072C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
PFK2	YMR205C	Beta subunit of heterooctameric phosphofructokinase	physical	1	1	1	Affinity Capture-RNA
PRC1	YMR297W	Vacuolar carboxypeptidase Y (proteinase C, CPY)	physical	1	1	1	Affinity Capture-RNA
MTC7	YEL033W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SHO1	YER118C	Transmembrane osmosensor for filamentous growth and HOG pathways	physical	1	1	1	Affinity Capture-RNA
YHR020W	YHR020W	Prolyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
SKS1	YPL026C	Putative serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
YDR341C	YDR341C	Arginyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
PHS1	YJL097W	Essential 3-hydroxyacyl-CoA dehydratase of the ER membrane	physical	1	1	1	Affinity Capture-RNA
RFA2	YNL312W	Subunit of heterotrimeric Replication Protein A (RPA)	physical	1	1	1	Affinity Capture-RNA
MYO2	YOR326W	Type V myosin motor involved in actin-based transport of cargos	physical	1	1	1	Affinity Capture-RNA
SGD1	YLR336C	Essential nuclear protein	physical	1	1	1	Affinity Capture-RNA
VPS3	YDR495C	Component of CORVET membrane tethering complex	physical	1	1	1	Affinity Capture-RNA
RPL30	YGL030W	Ribosomal 60S subunit protein L30	physical	1	1	1	Affinity Capture-RNA
PLN1	YKR046C	Perilipin, involved in formation and stability of lipid droplets	physical	1	1	1	Affinity Capture-RNA
SER2	YGR208W	Phosphoserine phosphatase of the phosphoglycerate pathway	physical	1	1	1	Affinity Capture-RNA
SFM1	YOR021C	SPOUT methyltransferase	physical	1	1	1	Affinity Capture-RNA
PEX11	YOL147C	Peroxisomal protein required for medium-chain fatty acid oxidation	physical	1	1	1	Affinity Capture-RNA
SKP1	YDR328C	Evolutionarily conserved kinetochore protein	physical	1	1	1	Affinity Capture-RNA
TPI1	YDR050C	Triose phosphate isomerase, abundant glycolytic enzyme	physical	1	1	1	Affinity Capture-RNA
URA3	YEL021W	Orotidine-5'-phosphate (OMP) decarboxylase	physical	1	1	1	Affinity Capture-RNA
RPG1	YBR079C	eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
NIF3	YGL221C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VMA4	YOR332W	Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase)	physical	1	1	1	Affinity Capture-RNA
SCS2	YER120W	Integral ER membrane protein, regulates phospholipid metabolism	physical	1	1	1	Affinity Capture-RNA
RDL1	YOR285W	Thiosulfate sulfurtransferase	physical	1	1	1	Affinity Capture-RNA
UTP21	YLR409C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	1	1	1	Affinity Capture-RNA
RPB4	YJL140W	RNA polymerase II subunit B32	physical	1	1	1	Affinity Capture-RNA
RPL9A	YGL147C	Ribosomal 60S subunit protein L9A	physical	1	1	1	Affinity Capture-RNA
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	physical	1	1	1	Affinity Capture-RNA
YDL144C	YDL144C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRPL32	YCR003W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
NUP170	YBL079W	Subunit of inner ring of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-RNA
TMA46	YOR091W	Protein of unknown function that associates with translating ribosomes	physical	1	1	1	Affinity Capture-RNA
SLT2	YHR030C	Serine/threonine MAP kinase	genetic	1	1	1	Dosage Rescue
SWI4	YER111C	DNA binding component of the SBF complex (Swi4p-Swi6p)	genetic	1	1	1	Synthetic Lethality
PAN2	YGL094C	Catalytic subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex	genetic	1	1	1	Synthetic Growth Defect
SMI1	YGR229C	Protein involved in the regulation of cell wall synthesis	genetic	1	1	1	Negative Genetic
SRO7	YPR032W	Effector of Rab GTPase Sec4p	genetic	1	1	1	Positive Genetic
SEC9	YGR009C	t-SNARE protein required for secretory vesicle-plasma membrane fusion	genetic	1	1	1	Negative Genetic
NUM1	YDR150W	Protein required for nuclear migration	genetic	1	1	1	Positive Genetic
RPN6	YDL097C	Essential, non-ATPase regulatory subunit of the 26S proteasome lid	genetic	1	1	1	Negative Genetic
RPN11	YFR004W	Metalloprotease subunit of 19S regulatory particle	genetic	1	1	1	Negative Genetic
SCL1	YGL011C	Alpha 1 subunit of the 20S proteasome	genetic	1	1	1	Negative Genetic
URA6	YKL024C	Uridylate kinase	genetic	1	1	1	Negative Genetic
RPT1	YKL145W	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	1	1	1	Negative Genetic
RGR1	YLR071C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
POL1	YNL102W	Catalytic subunit of the DNA polymerase I alpha-primase complex	genetic	1	1	1	Negative Genetic
TIM23	YNR017W	Essential component of the TIM23 complex	genetic	1	1	1	Negative Genetic
SMP3	YOR149C	Alpha 1,2-mannosyltransferase	genetic	1	1	1	Negative Genetic
SLX5	YDL013W	Subunit of the Slx5-Slx8 SUMO-targeted Ub ligase (STUbL) complex	genetic	1	1	1	Negative Genetic
PAC10	YGR078C	Part of the heteromeric co-chaperone GimC/prefoldin complex	genetic	1	1	1	Negative Genetic
SRB2	YHR041C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
YJL163C	YJL163C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
SHE2	YKL130C	RNA-binding protein that binds specific mRNAs and interacts with She3p	genetic	1	1	1	Negative Genetic
SIC1	YLR079W	Cyclin-dependent kinase inhibitor (CKI)	genetic	1	1	1	Negative Genetic
PIG1	YLR273C	Putative targeting subunit for type-1 protein phosphatase Glc7p	genetic	1	1	1	Negative Genetic
RPS30A	YLR287C-A	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
PPZ1	YML016C	Serine/threonine protein phosphatase Z, isoform of Ppz2p	genetic	1	1	1	Negative Genetic
YMR310C	YMR310C	Putative methyltransferase	genetic	1	1	1	Negative Genetic
TOP1	YOL006C	Topoisomerase I	genetic	1	1	1	Negative Genetic
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	genetic	1	1	1	Negative Genetic
TGS1	YPL157W	Trimethyl guanosine synthase, conserved nucleolar methyl transferase	genetic	1	1	1	Negative Genetic
PUF3	YLL013C	Protein of the mitochondrial outer surface	genetic	1	1	1	Phenotypic Suppression
PBP1	YGR178C	Component of glucose deprivation induced stress granules	genetic	1	1	1	Synthetic Rescue
RPL43A	YPR043W	Ribosomal 60S subunit protein L43A	genetic	1	1	1	Synthetic Rescue
CSG2	YBR036C	Endoplasmic reticulum membrane protein	genetic	1	1	1	Negative Genetic
BUD2	YKL092C	GTPase activating factor for Rsr1p/Bud1p	physical	1	1	1	Affinity Capture-RNA
GYP1	YOR070C	Cis-golgi GTPase-activating protein (GAP) for yeast Rabs	physical	1	1	1	Affinity Capture-RNA
GAL80	YML051W	Transcriptional regulator involved in the repression of GAL genes	physical	1	1	1	Affinity Capture-RNA
GIC1	YHR061C	Rho-family GTPase interacting protein and Cdc42p effector	physical	1	1	1	Affinity Capture-RNA
FCP1	YMR277W	Carboxy-terminal domain (CTD) phosphatase	physical	1	1	1	Affinity Capture-RNA
ARG80	YMR042W	Transcription factor involved in regulating arginine-responsive genes	physical	1	1	1	Affinity Capture-RNA
AFI1	YOR129C	Arf3p polarization-specific docking factor	physical	1	1	1	Affinity Capture-RNA
CAD1	YDR423C	AP-1-like basic leucine zipper (bZIP) transcriptional activator	physical	1	1	1	Affinity Capture-RNA
GTS1	YGL181W	Protein involved in Arf3p regulation and in transcription regulation	physical	1	1	1	Affinity Capture-RNA
HCH1	YNL281W	Heat shock protein regulator	physical	1	1	1	Affinity Capture-RNA
GNT1	YOR320C	N-acetylglucosaminyltransferase	physical	1	1	1	Affinity Capture-RNA
ARG8	YOL140W	Acetylornithine aminotransferase	physical	1	1	1	Affinity Capture-RNA
MAC1	YMR021C	Copper-sensing transcription factor	physical	1	1	1	Affinity Capture-RNA
HKR1	YDR420W	Mucin family member that functions as an osmosensor in the HOG pathway	physical	1	1	1	Affinity Capture-RNA
GIC2	YDR309C	Rho-family GTPase interacting protein and Cdc42p effector	physical	1	1	1	Affinity Capture-RNA
FIR1	YER032W	Protein involved in 3' mRNA processing	physical	1	1	1	Affinity Capture-RNA
LSB5	YCL034W	Protein involved in membrane-trafficking events at plasma membrane	physical	1	1	1	Affinity Capture-RNA
ATP10	YLR393W	Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ATP1	YBL099W	Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CLA4	YNL298W	Cdc42p-activated signal transducing kinase	genetic	1	1	1	Negative Genetic
DFG5	YMR238W	Putative mannosidase	physical	1	1	1	Affinity Capture-RNA
MCA1	YOR197W	Ca2+-dependent cysteine protease	physical	1	1	1	Affinity Capture-RNA
FUS1	YCL027W	Membrane protein localized to the shmoo tip	physical	1	1	1	Affinity Capture-RNA
CHS5	YLR330W	Component of the exomer complex	physical	1	1	1	Affinity Capture-RNA
HMS1	YOR032C	bHLH protein with similarity to myc-family transcription factors	physical	1	1	1	Affinity Capture-RNA
CPR7	YJR032W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
MFA2	YNL145W	Mating pheromone a-factor	physical	1	1	1	Affinity Capture-RNA
MNN11	YJL183W	Subunit of a Golgi mannosyltransferase complex	genetic	1	1	1	Positive Genetic
HAC1	YFL031W	Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog)	physical	1	1	1	Affinity Capture-RNA
DID2	YKR035W-A	Class E protein of the vacuolar protein-sorting (Vps) pathway	physical	1	1	1	Affinity Capture-RNA
MDL1	YLR188W	Mitochondrial inner membrane half-type ABC transporter	physical	1	1	1	Affinity Capture-RNA
ENV11	YGR071C	Protein proposed to be involved in vacuolar functions	physical	1	1	1	Affinity Capture-RNA
ENT5	YDR153C	Protein containing an N-terminal epsin-like domain	physical	1	1	1	Affinity Capture-RNA
ARL3	YPL051W	ARF-like small GTPase of the RAS superfamily	physical	1	1	1	Affinity Capture-RNA
DOM34	YNL001W	Protein that facilitates ribosomal subunit dissociation	physical	1	1	1	Affinity Capture-RNA
DOM34	YNL001W	Protein that facilitates ribosomal subunit dissociation	genetic	1	1	1	Negative Genetic
DBP6	YNR038W	Essential protein involved in ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
COX14	YML129C	Mitochondrial cytochrome c oxidase (complex IV) assembly factor	physical	1	1	1	Affinity Capture-RNA
ACM1	YPL267W	Pseudosubstrate inhibitor of the APC/C	physical	1	1	1	Affinity Capture-RNA
CLB3	YDL155W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-RNA
FAF1	YIL019W	Protein required for pre-rRNA processing	physical	1	1	1	Affinity Capture-RNA
CBP1	YJL209W	Mitochondrial protein, regulator of COB mRNA stability and translation	physical	1	1	1	Affinity Capture-RNA
EAF6	YJR082C	Subunit of the NuA4 acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
FLO8	YER109C	Transcription factor	physical	1	1	1	Affinity Capture-RNA
EAF7	YNL136W	Subunit of the NuA4 histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
EFT1	YOR133W	Elongation factor 2 (EF-2), also encoded by EFT2	physical	1	1	1	Affinity Capture-RNA
MET1	YKR069W	S-adenosyl-L-methionine uroporphyrinogen III transmethylase	physical	1	1	1	Affinity Capture-RNA
ASG1	YIL130W	Zinc cluster protein proposed to be a transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	physical	1	1	1	Affinity Capture-MS
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	genetic	1	1	1	Negative Genetic
GDH3	YAL062W	NADP(+)-dependent glutamate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
MMT2	YPL224C	Putative metal transporter involved in mitochondrial iron accumulation	physical	1	1	1	Affinity Capture-RNA
MHP1	YJL042W	Microtubule-associated protein involved in microtubule organization	physical	1	1	1	Affinity Capture-RNA
EUC1	YMR111C	Sequence-specific DNA binding protein	physical	1	1	1	Affinity Capture-RNA
AIM44	YPL158C	Regulator of Cdc42p and Rho1p	physical	1	1	1	Affinity Capture-RNA
ILV6	YCL009C	Regulatory subunit of acetolactate synthase	physical	1	1	1	Affinity Capture-RNA
MEU1	YLR017W	Methylthioadenosine phosphorylase (MTAP)	physical	1	1	1	Affinity Capture-RNA
KAR5	YMR065W	Protein required for nuclear membrane fusion during karyogamy	physical	1	1	1	Affinity Capture-RNA
CCC1	YLR220W	Vacuolar Fe2+/Mn2+ transporter	physical	1	1	1	Affinity Capture-RNA
EMC6	YLL014W	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
MDM1	YML104C	PtdIns-3-P binding protein that tethers the ER to vacuoles at NVJs	physical	1	1	1	Affinity Capture-RNA
BUG1	YDL099W	Cis-golgi localized protein involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
HMG1	YML075C	HMG-CoA reductase	physical	1	1	1	Affinity Capture-RNA
ATX1	YNL259C	Cytosolic copper metallochaperone	physical	1	1	1	Affinity Capture-RNA
HCM1	YCR065W	Forkhead transcription factor	physical	1	1	1	Affinity Capture-RNA
ASF2	YDL197C	Anti-silencing protein	physical	1	1	1	Affinity Capture-RNA
HSP31	YDR533C	Methylglyoxalase that converts methylglyoxal to D-lactate	physical	1	1	1	Affinity Capture-RNA
EMP70	YLR083C	Protein with a role in cellular adhesion and filamentous growth	physical	1	1	1	Affinity Capture-RNA
BTS1	YPL069C	Geranylgeranyl diphosphate synthase (GGPPS)	genetic	1	1	1	Negative Genetic
FRK1	YPL141C	Protein kinase of unknown cellular role	physical	1	1	1	Affinity Capture-RNA
DUS3	YLR401C	Dihydrouridine synthase	physical	1	1	1	Affinity Capture-RNA
EGT2	YNL327W	Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase	physical	1	1	1	Affinity Capture-RNA
CIR1	YGR207C	Mitochondrial protein that interacts with frataxin (Yfh1p)	physical	1	1	1	Affinity Capture-RNA
ERG2	YMR202W	C-8 sterol isomerase	physical	1	1	1	Affinity Capture-RNA
INP1	YMR204C	Peripheral membrane protein of peroxisomes	physical	1	1	1	Affinity Capture-RNA
BSC6	YOL137W	Protein of unknown function with 8 putative transmembrane segments	physical	1	1	1	Affinity Capture-RNA
GDA1	YEL042W	Guanosine diphosphatase located in the Golgi	physical	1	1	1	Affinity Capture-RNA
ANT1	YPR128C	Peroxisomal adenine nucleotide transporter	physical	1	1	1	Affinity Capture-RNA
MF(ALPHA)1	YPL187W	Mating pheromone alpha-factor, made by alpha cells	physical	1	1	1	Affinity Capture-RNA
ERI1	YPL096C-A	Endoplasmic reticulum membrane protein that binds and inhibits Ras2p	physical	1	1	1	Affinity Capture-RNA
BNA7	YDR428C	Formylkynurenine formamidase	physical	1	1	1	Affinity Capture-RNA
ATP14	YLR295C	Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ATP15	YPL271W	Epsilon subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CUE1	YMR264W	Ubiquitin-binding protein	physical	1	1	1	Affinity Capture-RNA
DAD3	YBR233W-A	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
DAD4	YDR320C-A	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
BOL3	YAL046C	Protein involved in Fe-S cluster transfer to mitochondrial clients	physical	1	1	1	Affinity Capture-RNA
MET17	YLR303W	O-acetyl homoserine-O-acetyl serine sulfhydrylase	physical	1	1	1	Affinity Capture-RNA
IRC7	YFR055W	Cysteine desulphydrase, enables growth on cysteine as nitrogen source	physical	1	1	1	Affinity Capture-RNA
DRN1	YGR093W	Splicing factor that modulates turnover of branched RNAs by Dbr1p	physical	1	1	1	Affinity Capture-RNA
MAP1	YLR244C	Methionine aminopeptidase	physical	1	1	1	Affinity Capture-RNA
DCC1	YCL016C	Subunit of a complex with Ctf8p and Ctf18p	genetic	1	1	1	Negative Genetic
CPR5	YDR304C	Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the ER	physical	1	1	1	Affinity Capture-RNA
BUD23	YCR047C	Ribosome biogenesis factor	physical	1	1	1	Affinity Capture-RNA
HXK1	YFR053C	Hexokinase isoenzyme 1	physical	1	1	1	Protein-RNA
BUL2	YML111W	Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex	physical	1	1	1	Affinity Capture-RNA
GUK1	YDR454C	Guanylate kinase	physical	1	1	1	Affinity Capture-RNA
COQ11	YLR290C	Putative oxidoreductase, subunit of Coenzyme Q biosynthetic complexes	physical	1	1	1	Affinity Capture-RNA
AHK1	YDL073W	Scaffold protein in the HKR1 sub-branch of the Hog1p-signaling pathway	physical	1	1	1	Affinity Capture-RNA
GRX4	YER174C	Glutathione-dependent oxidoreductase and glutathione S-transferase	physical	1	1	1	Affinity Capture-RNA
GLG1	YKR058W	Glycogenin glucosyltransferase	physical	1	1	1	Affinity Capture-RNA
ATG38	YLR211C	Homodimeric subunit of autophagy-specific PtdIns-3-kinase complex I	physical	1	1	1	Affinity Capture-RNA
GEP7	YGL057C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CRS1	YNL247W	Cysteinyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
CUE3	YGL110C	Subunit of ribosome-associated quality control trigger complex (RQT)	physical	1	1	1	Affinity Capture-RNA
ATG32	YIL146C	Mitochondrial outer membrane protein required to initiate mitophagy	physical	1	1	1	Affinity Capture-RNA
ARA2	YMR041C	NAD-dependent arabinose dehydrogenase	physical	1	1	1	Affinity Capture-RNA
IPF1	YDL176W	Protein of unknown function involved in actin patch formation	physical	1	1	1	Affinity Capture-RNA
ACB1	YGR037C	Acyl-CoA-binding protein	physical	1	1	1	Affinity Capture-RNA
MPP6	YNR024W	Nuclear exosome-associated RNA binding protein	physical	1	1	1	Affinity Capture-RNA
GUT1	YHL032C	Glycerol kinase	physical	1	1	1	Affinity Capture-RNA
HOB2	YPR117W	Protein with structural similarity to lipid transport protein Vps13p	physical	1	1	1	Affinity Capture-RNA
MMF1	YIL051C	Mitochondrial protein required for transamination of isoleucine	physical	1	1	1	Affinity Capture-RNA
ALD6	YPL061W	Cytosolic aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ATP12	YJL180C	Assembly factor for F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CYB5	YNL111C	Cytochrome b5	genetic	1	1	1	Negative Genetic
CTP1	YBR291C	Mitochondrial inner membrane citrate transporter	physical	1	1	1	Affinity Capture-RNA
CBS1	YDL069C	Mitochondrial translational activator of the COB mRNA	physical	1	1	1	Affinity Capture-RNA
CYK3	YDL117W	SH3-domain protein located in the bud neck and cytokinetic actin ring	genetic	1	1	1	Negative Genetic
APS1	YLR170C	Small subunit of the clathrin-associated adaptor complex AP-1	physical	1	1	1	Affinity Capture-RNA
GCV3	YAL044C	H subunit of the mitochondrial glycine decarboxylase complex	physical	1	1	1	Affinity Capture-RNA
CAJ1	YER048C	Nuclear type II J heat shock protein of the E. coli dnaJ family	physical	1	1	1	Affinity Capture-RNA
MDM36	YPR083W	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
ANY1	YMR010W	Protein involved in phospholipid flippase function	physical	1	1	1	Affinity Capture-RNA
MGR1	YCL044C	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	physical	1	1	1	Affinity Capture-RNA
DIN7	YDR263C	Mitochondrial nuclease functioning in DNA repair and replication	physical	1	1	1	Affinity Capture-RNA
ADE12	YNL220W	Adenylosuccinate synthase	physical	1	1	1	Affinity Capture-RNA
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	physical	1	1	1	Affinity Capture-RNA
GOR1	YNL274C	Glyoxylate reductase	physical	1	1	1	Affinity Capture-RNA
GLN4	YOR168W	Glutamine tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
IRC25	YLR021W	Component of a heterodimeric Poc4p-Irc25p chaperone	physical	1	1	1	Affinity Capture-RNA
FAS1	YKL182W	Beta subunit of fatty acid synthetase	physical	1	1	1	Affinity Capture-RNA
MCY1	YGR012W	Putative cysteine synthase	physical	1	1	1	Affinity Capture-RNA
AHC2	YCR082W	Component of the ADA histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
KRE28	YDR532C	Subunit of a kinetochore-microtubule binding complex	physical	1	1	1	Affinity Capture-RNA
CWH41	YGL027C	Processing alpha glucosidase I	physical	1	1	1	Affinity Capture-RNA
ARO3	YDR035W	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Affinity Capture-RNA
MPA43	YNL249C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DPH5	YLR172C	Methyltransferase required for synthesis of diphthamide	physical	1	1	1	Affinity Capture-RNA
GCS1	YDL226C	ADP-ribosylation factor GTPase activating protein (ARF GAP)	physical	1	1	1	Affinity Capture-RNA
ARO2	YGL148W	Bifunctional chorismate synthase and flavin reductase	physical	1	1	1	Affinity Capture-RNA
HEM1	YDR232W	5-aminolevulinate synthase	physical	1	1	1	Affinity Capture-RNA
DEG1	YFL001W	tRNA:pseudouridine synthase	physical	1	1	1	Affinity Capture-RNA
AST1	YBL069W	Lipid raft associated protein	physical	1	1	1	Affinity Capture-RNA
DUS1	YML080W	Dihydrouridine synthase	physical	1	1	1	Affinity Capture-RNA
INP54	YOL065C	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase	physical	1	1	1	Affinity Capture-RNA
ICS2	YBR157C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
AIM39	YOL053W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MET2	YNL277W	L-homoserine-O-acetyltransferase	physical	1	1	1	Affinity Capture-RNA
MDG1	YNL173C	Plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
ECM22	YLR228C	Sterol regulatory element binding protein	physical	1	1	1	Affinity Capture-RNA
AGE1	YDR524C	ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector	physical	1	1	1	Affinity Capture-RNA
CHS7	YHR142W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MPD1	YOR288C	Member of the protein disulfide isomerase (PDI) family	physical	1	1	1	Affinity Capture-RNA
DIA1	YMR316W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MIC26	YGR235C	Component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
ALG6	YOR002W	ER-luminal alpha 1,3 glucosyltransferase	physical	1	1	1	Affinity Capture-RNA
EOS1	YNL080C	Protein involved in N-glycosylation	physical	1	1	1	Affinity Capture-RNA
COX10	YPL172C	Heme A:farnesyltransferase	physical	1	1	1	Affinity Capture-RNA
CYT1	YOR065W	Cytochrome c1	physical	1	1	1	Affinity Capture-RNA
GPI19	YDR437W	Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI	physical	1	1	1	Affinity Capture-RNA
MDM38	YOL027C	Membrane-associated mitochondrial ribosome receptor	physical	1	1	1	Affinity Capture-RNA
MNN5	YJL186W	Alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
ATR1	YML116W	Multidrug efflux pump of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
CDC50	YCR094W	Endosomal protein that interacts with phospholipid flippase Drs2p	physical	1	1	1	Affinity Capture-RNA
HEM2	YGL040C	Aminolevulinate dehydratase	physical	1	1	1	Affinity Capture-RNA
HIT1	YJR055W	Protein involved in C/D snoRNP assembly	physical	1	1	1	Affinity Capture-RNA
JJJ3	YJR097W	Iron-binding protein	physical	1	1	1	Affinity Capture-RNA
EAR1	YMR171C	Specificity factor required for Rsp5p-dependent ubiquitination	physical	1	1	1	Affinity Capture-RNA
ARF3	YOR094W	Glucose-repressible ADP-ribosylation factor	physical	1	1	1	Affinity Capture-RNA
HXT2	YMR011W	High-affinity glucose transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
HXT3	YDR345C	Low affinity glucose transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
DFG16	YOR030W	Probable multiple transmembrane protein	physical	1	1	1	Affinity Capture-RNA
KIP3	YGL216W	Kinesin-related antiparallel sliding motor protein	physical	1	1	1	Affinity Capture-RNA
COM2	YER130C	Transcription factor that binds IME1 Upstream Activation Signal (UAS)	physical	1	1	1	Affinity Capture-RNA
ERG4	YGL012W	C-24(28) sterol reductase	physical	1	1	1	Affinity Capture-RNA
AIM34	YMR003W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CIS3	YJL158C	Mannose-containing glycoprotein constituent of the cell wall	physical	1	1	1	Affinity Capture-RNA
LDB18	YLL049W	Component of the dynactin complex	genetic	1	1	1	Positive Genetic
MEP3	YPR138C	Ammonium permease of high capacity and low affinity	physical	1	1	1	Affinity Capture-RNA
BAP2	YBR068C	High-affinity leucine permease	physical	1	1	1	Affinity Capture-RNA
FCY2	YER056C	Purine-cytosine permease	physical	1	1	1	Affinity Capture-RNA
DPP1	YDR284C	Diacylglycerol pyrophosphate (DGPP) phosphatase	physical	1	1	1	Affinity Capture-RNA
ERP4	YOR016C	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	physical	1	1	1	Affinity Capture-RNA
MDM32	YOR147W	Mitochondrial inner membrane protein with similarity to Mdm31p	physical	1	1	1	Affinity Capture-RNA
BSC1	YDL037C	Protein of unconfirmed function	physical	1	1	1	Affinity Capture-RNA
COX7	YMR256C	Subunit VII of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
CGR1	YGL029W	Protein involved in nucleolar integrity and processing of pre-rRNA	physical	1	1	1	Affinity Capture-RNA
ERP6	YGL002W	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
LYP1	YNL268W	Lysine permease	physical	1	1	1	Affinity Capture-RNA
CHO2	YGR157W	Phosphatidylethanolamine methyltransferase (PEMT)	physical	1	1	1	Affinity Capture-RNA
FAA3	YIL009W	Long chain fatty acyl-CoA synthetase	physical	1	1	1	Affinity Capture-RNA
CCW12	YLR110C	Cell wall mannoprotein	genetic	1	1	1	Positive Genetic
ARO7	YPR060C	Chorismate mutase	physical	1	1	1	Affinity Capture-RNA
DAL2	YIR029W	Allantoicase	physical	1	1	1	Affinity Capture-RNA
CTT1	YGR088W	Cytosolic catalase T	physical	1	1	1	Affinity Capture-RNA
MAK31	YCR020C-A	Non-catalytic subunit of N-terminal acetyltransferase of the NatC type	physical	1	1	1	Affinity Capture-RNA
FRT1	YOR324C	Tail-anchored ER membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ALG2	YGL065C	Mannosyltransferase in the N-linked glycosylation pathway	physical	1	1	1	Affinity Capture-RNA
LOT5	YKL183W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ISC1	YER019W	Inositol phosphosphingolipid phospholipase C	physical	1	1	1	Affinity Capture-RNA
BUD16	YEL029C	Putative pyridoxal kinase	physical	1	1	1	Affinity Capture-RNA
HAL9	YOL089C	Putative transcription factor containing a zinc finger	physical	1	1	1	Affinity Capture-RNA
DUS4	YLR405W	Dihydrouridine synthase	physical	1	1	1	Affinity Capture-RNA
CHO1	YER026C	Phosphatidylserine synthase	physical	1	1	1	Affinity Capture-RNA
DSE2	YHR143W	Daughter cell-specific secreted protein with similarity to glucanases	physical	1	1	1	Affinity Capture-RNA
FIT2	YOR382W	Mannoprotein that is incorporated into the cell wall	genetic	1	1	1	Negative Genetic
EDC1	YGL222C	RNA-binding protein that activates mRNA decapping directly	physical	1	1	1	Affinity Capture-RNA
AGA2	YGL032C	Adhesion subunit of a-agglutinin of a-cells	physical	1	1	1	Affinity Capture-RNA
FLC3	YGL139W	Putative FAD transporter, similar to Flc1p and Flc2p	physical	1	1	1	Affinity Capture-RNA
CWC27	YPL064C	Component of a complex containing Cef1p	physical	1	1	1	Affinity Capture-RNA
EMI1	YDR512C	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FIT1	YDR534C	Mannoprotein that is incorporated into the cell wall	physical	1	1	1	Affinity Capture-RNA
BOR1	YNL275W	Boron efflux transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
ELO1	YJL196C	Elongase I, medium-chain acyl elongase	physical	1	1	1	Affinity Capture-RNA
DLD1	YDL174C	Major mitochondrial D-lactate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
COX13	YGL191W	Subunit VIa of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
COX9	YDL067C	Subunit VIIa of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
DUG3	YNL191W	Component of glutamine amidotransferase (GATase II)	physical	1	1	1	Affinity Capture-RNA
GIS3	YLR094C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
IML2	YJL082W	Protein required for clearance of inclusion bodies	physical	1	1	1	Affinity Capture-RNA
MHO1	YJR008W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
APT2	YDR441C	Potential adenine phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
LAM4	YHR080C	Sterol-binding protein that localizes to puncta in the cortical ER	physical	1	1	1	Affinity Capture-RNA
IFM1	YOL023W	Mitochondrial translation initiation factor 2	physical	1	1	1	Affinity Capture-RNA
APA2	YDR530C	Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase II	physical	1	1	1	Affinity Capture-RNA
JAC1	YGL018C	Specialized J-protein that functions in Fe-S cluster biogenesis	physical	1	1	1	Affinity Capture-RNA
HTS1	YPR033C	Cytoplasmic and mitochondrial histidine tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
HTS1	YPR033C	Cytoplasmic and mitochondrial histidine tRNA synthetase	genetic	1	1	1	Negative Genetic
GTF1	YGR102C	Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex	physical	1	1	1	Affinity Capture-RNA
HOR7	YMR251W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
COX8	YLR395C	Subunit VIII of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
MPC1	YGL080W	Highly conserved subunit of mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Affinity Capture-RNA
MIC12	YBR262C	Component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
CMC1	YKL137W	Copper-binding protein of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
FMC1	YIL098C	Mitochondrial matrix protein	physical	1	1	1	Affinity Capture-RNA
FAU1	YER183C	5,10-methenyltetrahydrofolate synthetase	physical	1	1	1	Affinity Capture-RNA
AIM32	YML050W	2Fe-2S mitochondrial protein involved in redox quality control	physical	1	1	1	Affinity Capture-RNA
MAL11	YGR289C	High-affinity maltose transporter (alpha-glucoside transporter)	physical	1	1	1	Affinity Capture-RNA
MPC2	YHR162W	Highly conserved subunit of the mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Affinity Capture-RNA
GLD1	YPR109W	Component of Dsc E3 ligase complex in Golgi and endosomes	physical	1	1	1	Affinity Capture-RNA
CMC4	YMR194C-B	Protein that localizes to the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
IZH2	YOL002C	Plasma membrane receptor for plant antifungal osmotin	physical	1	1	1	Affinity Capture-RNA
MAL33	YBR297W	MAL-activator protein	physical	1	1	1	Affinity Capture-RNA
HEL1	YKR017C	RING finger ubiquitin ligase (E3)	physical	1	1	1	Affinity Capture-RNA
EFM4	YIL064W	Lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
CDC1	YDR182W	Putative mannose-ethanolamine phosphate phosphodiesterase	genetic	1	1	1	Negative Genetic
FRE4	YNR060W	Ferric reductase	physical	1	1	1	Affinity Capture-RNA
CPR8	YNR028W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
LCL2	YLR104W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
JHD1	YER051W	JmjC domain family histone demethylase specific for H3-K36	physical	1	1	1	Affinity Capture-RNA
EMC3	YKL207W	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
DPC13	YGL041W-A	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LIP2	YLR239C	Lipoyl ligase	physical	1	1	1	Affinity Capture-RNA
CHM7	YJL049W	Yeast homolog of human CHMP7, localizes to the endoplasmic reticulum	physical	1	1	1	Affinity Capture-RNA
BER1	YLR412W	Protein involved in microtubule-related processes	physical	1	1	1	Affinity Capture-RNA
LAS21	YJL062W	Mannose-ethanolamine phosphotransferase	physical	1	1	1	Affinity Capture-RNA
DGK1	YOR311C	Diacylglycerol kinase	physical	1	1	1	Affinity Capture-RNA
MMM1	YLL006W	ER integral membrane protein, ERMES complex subunit	physical	1	1	1	Affinity Capture-RNA
ENV9	YOR246C	Conserved oxidoreductase involved in lipid droplet morphology	physical	1	1	1	Affinity Capture-RNA
COA6	YMR244C-A	Protein involved in cytochrome c oxidase (Complex IV) assembly	physical	1	1	1	Affinity Capture-RNA
FSH1	YHR049W	Lysophospholipase	physical	1	1	1	Affinity Capture-RNA
AIM24	YJR080C	Protein with a role in determining mitochondrial architecture	physical	1	1	1	Affinity Capture-RNA
AIM24	YJR080C	Protein with a role in determining mitochondrial architecture	genetic	1	1	1	Positive Genetic
EXO5	YBR163W	Mitochondrial 5'-3' exonuclease and sliding exonuclease	physical	1	1	1	Affinity Capture-RNA
ILT1	YDR090C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MFA1	YDR461W	Mating pheromone a-factor	physical	1	1	1	Affinity Capture-RNA
CSS3	YOL159C	Protein of unknown function, secreted when constitutively expressed	physical	1	1	1	Affinity Capture-RNA
DPI35	YMR130W	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
IAH1	YOR126C	Isoamyl acetate-hydrolyzing esterase	physical	1	1	1	Affinity Capture-RNA
HTC1	YPL067C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LCL3	YGL085W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GYP8	YFL027C	GTPase-activating protein for yeast Rab family members	physical	1	1	1	Affinity Capture-RNA
CWP1	YKL096W	Cell wall mannoprotein that localizes to birth scars of daughter cells	physical	1	1	1	Affinity Capture-RNA
ICE2	YIL090W	Integral ER membrane protein with type-III transmembrane domains	physical	1	1	1	Affinity Capture-RNA
LRE1	YCL051W	Protein involved in control of cell wall structure and stress response	physical	1	1	1	Affinity Capture-RNA
IRC21	YMR073C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MCH5	YOR306C	Plasma membrane riboflavin transporter	physical	1	1	1	Affinity Capture-RNA
DXO1	YDR370C	Cytoplasmic 5' exoribonuclease	physical	1	1	1	Affinity Capture-RNA
HNT3	YOR258W	DNA 5' AMP hydrolase involved in DNA repair	physical	1	1	1	Affinity Capture-RNA
AAT1	YKL106W	Mitochondrial aspartate aminotransferase	physical	1	1	1	Affinity Capture-RNA
FRE7	YOL152W	Putative ferric reductase with similarity to Fre2p	physical	1	1	1	Affinity Capture-RNA
APQ12	YIL040W	Nuclear envelope/ER integral membrane protein	physical	1	1	1	Affinity Capture-RNA
MPO1	YGL010W	Dioxygenase that catalyzes alpha-oxygenation of 2-hydroxy fatty acids	physical	1	1	1	Affinity Capture-RNA
KCH1	YJR054W	Potassium transporter that mediates K+ influx	genetic	1	1	1	Negative Genetic
CAX4	YGR036C	Dolichyl pyrophosphate (Dol-P-P) phosphatase	physical	1	1	1	Affinity Capture-RNA