Standard name Systematic name Name description Description
ISW1 YBR245C ATPase subunit of imitation-switch (ISWI) class chromatin remodelers ATPase subunit of imitation-switch (ISWI) class chromatin remodelers; with Ioc3p forms Isw1a complex involved in repression of transcription initiation; with Ioc2p and Ioc4p forms Isw1b complex involved in regulation of transcription elongation; Isw1b recruited to ORFs by H3K36 methylation and acts with Chd1p to prevent trans-histone exchange over coding regions; Isw1p import into nucleus depends on C-terminal bipartite nuclear targeting signal KRIR X19 KKAK
Visualize the interactome of ISW1
Links to external databases:
  SGD   |   KEGG   |  

Cell cycle phase and timing of transcription peak

Cell cycle phase Time (min)
G1(P) 28

CYCLoPs localization & abundance

WT1 WT2 WT3
Cytoplasm 0.062 NaN NaN
Nucleolus 0.359 0.246 0.205
Nucleus 0.781 0.856 0.882

GFP localization & abundance

GFP localization GFP abundance
nucleus 1500

GO term count

Metabolism Cell cycle Cell division Signal transduction DNA replication
ISW1 8 1 0 0 0

Enzyme information

Catalyzed reactions in Yeast8

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.
Standard name Systematic name Name description Type #Experiments #Methods #Publications Evidence
IOC3 YFR013W Subunit of the Isw1a complex physical 12 6 11 Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-Western, Co-crystal Structure, Co-purification, Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-Western
CHD1 YER164W Chromatin remodeler that regulates various aspects of transcription genetic 11 3 10 Synthetic Growth Defect, Synthetic Growth Defect, Negative Genetic, Synthetic Growth Defect, Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic, Negative Genetic, Phenotypic Enhancement, Phenotypic Enhancement, Phenotypic Enhancement
MOT1 YPL082C Essential protein involved in regulation of transcription physical 7 3 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-RNA
IOC2 YLR095C Subunit of the Isw1b complex physical 6 3 6 Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-Western
HTZ1 YOL012C Histone variant H2AZ genetic 6 3 4 Synthetic Lethality, Synthetic Lethality, Synthetic Lethality, Phenotypic Enhancement, Phenotypic Enhancement, Synthetic Growth Defect
ISW2 YOR304W ATP-dependent DNA translocase involved in chromatin remodeling genetic 5 2 5 Synthetic Growth Defect, Synthetic Growth Defect, Synthetic Growth Defect, Phenotypic Enhancement, Phenotypic Enhancement
SIN3 YOL004W Component of both the Rpd3S and Rpd3L histone deacetylase complexes physical 5 2 3 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
CHD1 YER164W Chromatin remodeler that regulates various aspects of transcription physical 4 3 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-RNA
HHF1 YBR009C Histone H4 physical 4 3 4 Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex
ISW2 YOR304W ATP-dependent DNA translocase involved in chromatin remodeling physical 4 3 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-RNA
HHT1 YBR010W Histone H3 physical 4 3 4 Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex
ITC1 YGL133W Subunit of ATP-dependent Isw2p-Itc1p chromatin remodeling complex physical 4 2 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
IOC4 YMR044W Member of a complex (Isw1b) with Isw1p and Ioc2p physical 4 2 4 Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
SLX5 YDL013W Subunit of the Slx5-Slx8 SUMO-targeted Ub ligase (STUbL) complex genetic 4 2 3 Negative Genetic, Synthetic Growth Defect, Negative Genetic, Negative Genetic
SEC22 YLR268W R-SNARE protein genetic 4 1 3 Negative Genetic, Negative Genetic, Negative Genetic, Negative Genetic
RET1 YOR207C Second-largest subunit of RNA polymerase III physical 4 3 2 Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western
ESA1 YOR244W Catalytic subunit of the histone acetyltransferase complex (NuA4) genetic 4 1 2 Synthetic Growth Defect, Synthetic Growth Defect, Synthetic Growth Defect, Synthetic Growth Defect
UME6 YDR207C Rpd3L histone deacetylase complex subunit genetic 3 2 3 Negative Genetic, Positive Genetic, Negative Genetic
ESC8 YOL017W Protein involved in telomeric and mating-type locus silencing physical 3 2 3 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
HTB1 YDR224C Histone H2B physical 3 2 3 Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex
YTA7 YGR270W Chromatin-binding ATPase that regulates histone gene expression genetic 3 1 3 Negative Genetic, Negative Genetic, Negative Genetic
MMR1 YLR190W Phosphorylated protein of the mitochondrial outer membrane genetic 3 1 3 Negative Genetic, Negative Genetic, Negative Genetic
HTA2 YBL003C Histone H2A physical 3 1 3 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
NCB2 YDR397C Subunit of a heterodimeric NC2 transcription regulator complex genetic 3 3 2 Synthetic Growth Defect, Phenotypic Enhancement, Negative Genetic
ERP1 YAR002C-A Member of the p24 family involved in ER to Golgi transport genetic 3 2 2 Phenotypic Enhancement, Phenotypic Enhancement, Negative Genetic
VPS71 YML041C Nucleosome-binding component of the SWR1 complex genetic 3 2 2 Phenotypic Enhancement, Phenotypic Enhancement, Synthetic Growth Defect
VPS72 YDR485C Htz1p-binding component of the SWR1 complex genetic 3 2 2 Phenotypic Enhancement, Phenotypic Enhancement, Synthetic Growth Defect
GCN5 YGR252W Catalytic subunit of ADA and SAGA histone acetyltransferase complexes genetic 3 2 2 Synthetic Rescue, Dosage Lethality, Synthetic Rescue
RSC8 YFR037C Component of the RSC chromatin remodeling complex physical 3 1 2 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
SLX8 YER116C Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex genetic 3 1 2 Negative Genetic, Negative Genetic, Negative Genetic
HHT1 YBR010W Histone H3 genetic 3 1 2 Synthetic Growth Defect, Synthetic Growth Defect, Synthetic Growth Defect
RSC8 YFR037C Component of the RSC chromatin remodeling complex genetic 3 2 1 Phenotypic Suppression, Phenotypic Enhancement, Phenotypic Enhancement
HHF2 YNL030W Histone H4 physical 2 2 2 Affinity Capture-Western, Affinity Capture-MS
TAF1 YGR274C TFIID subunit, involved in RNA pol II transcription initiation physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
STE12 YHR084W Transcription factor that is activated by a MAPK signaling cascade physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
SGD1 YLR336C Essential nuclear protein physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
RSC3 YDR303C Component of the RSC chromatin remodeling complex physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
YTA7 YGR270W Chromatin-binding ATPase that regulates histone gene expression physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
SMY1 YKL079W Kinesin-like myosin passenger-protein physical 2 2 2 Two-hybrid, Affinity Capture-RNA
NIP100 YPL174C Large subunit of the dynactin complex physical 2 2 2 Two-hybrid, Affinity Capture-RNA
SPT10 YJL127C Histone H3 acetylase with a role in transcriptional regulation physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
RPC82 YPR190C RNA polymerase III subunit C82 physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
SWR1 YDR334W Swi2/Snf2-related ATPase genetic 2 2 2 Synthetic Lethality, Synthetic Growth Defect
RPN4 YDL020C Transcription factor that stimulates expression of proteasome genes genetic 2 2 2 Synthetic Growth Defect, Negative Genetic
TFC6 YDR362C Subunit of RNA polymerase III transcription initiation factor complex physical 2 2 2 Affinity Capture-RNA, Affinity Capture-MS
UTP10 YJL109C Nucleolar protein physical 2 2 2 Affinity Capture-RNA, Affinity Capture-MS
ORC2 YBR060C Subunit of the origin recognition complex (ORC) genetic 2 2 2 Synthetic Lethality, Negative Genetic
MFT1 YML062C Subunit of the THO complex genetic 2 2 2 Synthetic Growth Defect, Synthetic Rescue
CMR1 YDL156W Nuclear protein with role in transcription, protein quality control physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
CDC6 YJL194W Essential ATP-binding protein required for DNA replication genetic 2 2 2 Synthetic Growth Defect, Negative Genetic
APJ1 YNL077W Hsp40 chaperone with a role in SUMO-mediated protein degradation physical 2 2 2 Affinity Capture-RNA, Affinity Capture-MS
EAF1 YDR359C Component of the NuA4 histone acetyltransferase complex genetic 2 1 2 Synthetic Lethality, Synthetic Lethality
CDC48 YDL126C AAA ATPase with protein-unfoldase activity genetic 2 1 2 Negative Genetic, Negative Genetic
HTB2 YBL002W Histone H2B physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
NPL6 YMR091C Component of the RSC chromatin remodeling complex physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
RSC2 YLR357W Component of the RSC chromatin remodeling complex physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
RSC4 YKR008W Component of the RSC chromatin remodeling complex physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
RSC6 YCR052W Component of the RSC chromatin remodeling complex physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
VPS1 YKR001C Dynamin-like GTPase required for vacuolar sorting physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
RSC58 YLR033W Component of the RSC chromatin remodeling complex physical 2 1 2 Affinity Capture-MS, Affinity Capture-MS
SPT16 YGL207W Subunit of the heterodimeric FACT complex (Spt16p-Pob3p) genetic 2 1 2 Synthetic Growth Defect, Synthetic Growth Defect
SNU114 YKL173W GTPase component of U5 snRNP involved in mRNA splicing via spliceosome genetic 2 1 2 Negative Genetic, Negative Genetic
NUP133 YKR082W Subunit of Nup84p subcomplex of nuclear pore complex (NPC) genetic 2 1 2 Negative Genetic, Negative Genetic
RIC1 YLR039C Protein involved in retrograde transport to the cis-Golgi network genetic 2 1 2 Negative Genetic, Negative Genetic
YNG2 YHR090C Subunit of NuA4, an essential histone acetyltransferase complex genetic 2 1 2 Synthetic Lethality, Synthetic Lethality
YHC1 YLR298C Component of the U1 snRNP complex required for pre-mRNA splicing genetic 2 1 2 Negative Genetic, Negative Genetic
PRP4 YPR178W Splicing factor genetic 2 1 2 Negative Genetic, Negative Genetic
NPL3 YDR432W RNA-binding protein genetic 2 1 2 Synthetic Rescue, Synthetic Rescue
APC5 YOR249C Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) genetic 2 1 2 Negative Genetic, Negative Genetic
ASF1 YJL115W Nucleosome assembly factor genetic 2 2 1 Synthetic Growth Defect, Phenotypic Enhancement
MOT1 YPL082C Essential protein involved in regulation of transcription genetic 2 2 1 Synthetic Growth Defect, Phenotypic Enhancement
MEX67 YPL169C Poly(A)RNA binding protein involved in nuclear mRNA export physical 2 2 1 Affinity Capture-Western, Affinity Capture-RNA
RAD26 YJR035W Protein involved in transcription-coupled nucleotide excision repair genetic 2 2 1 Phenotypic Suppression, Phenotypic Enhancement
SAS3 YBL052C Histone acetyltransferase catalytic subunit of NuA3 complex genetic 2 2 1 Synthetic Rescue, Dosage Lethality
RAD14 YMR201C Subunit of Nucleotide Excision Repair Factor 1 (NEF1) genetic 2 2 1 Phenotypic Suppression, Phenotypic Enhancement
OGG1 YML060W Nuclear and mitochondrial glycosylase/lyase genetic 2 2 1 Phenotypic Suppression, Phenotypic Enhancement
APN1 YKL114C Major apurinic/apyrimidinic endonuclease genetic 2 2 1 Phenotypic Suppression, Phenotypic Enhancement
BUR6 YER159C Subunit of a heterodimeric NC2 transcription regulator complex genetic 2 2 1 Synthetic Growth Defect, Phenotypic Enhancement
ARP4 YJL081C Nuclear actin-related protein involved in chromatin remodeling genetic 2 1 1 Synthetic Growth Defect, Synthetic Growth Defect
ERP2 YAL007C Member of the p24 family involved in ER to Golgi transport genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
RVB1 YDR190C ATP-dependent DNA helicase, also known as pontin physical 2 1 1 Affinity Capture-MS, Affinity Capture-MS
RRP6 YOR001W Nuclear exosome exonuclease component physical 2 1 1 Affinity Capture-Western, Affinity Capture-Western
SUM1 YDR310C Transcriptional repressor that regulates middle-sporulation genes genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
VPS54 YDR027C Component of the GARP (Golgi-associated retrograde protein) complex genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
TRS85 YDR108W Component of transport protein particle (TRAPP) complex III genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
RAD9 YDR217C DNA damage-dependent checkpoint protein genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
NEM1 YHR004C Probable catalytic subunit of Nem1p-Spo7p phosphatase holoenzyme genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
YHR078W YHR078W High osmolarity-regulated gene of unknown function genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
VPS53 YJL029C Component of the GARP (Golgi-associated retrograde protein) complex genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
VPS51 YKR020W Component of the GARP (Golgi-associated retrograde protein) complex genetic 2 1 1 Phenotypic Suppression, Phenotypic Suppression
VPS52 YDR484W Component of the GARP (Golgi-associated retrograde protein) complex genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
SWC3 YAL011W Protein of unknown function genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
SIL1 YOL031C Nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
KRE1 YNL322C Cell wall glycoprotein involved in beta-glucan assembly genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
MDY2 YOL111C Protein involved in inserting tail-anchored proteins into ER membranes genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
MNN2 YBR015C Alpha-1,2-mannosyltransferase genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
VPS3 YDR495C Component of CORVET membrane tethering complex genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
ADA2 YDR448W Transcription coactivator genetic 2 1 1 Synthetic Growth Defect, Synthetic Growth Defect
GET3 YDL100C Guanine nucleotide exchange factor for Gpa1p genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
GET4 YOR164C Protein involved in inserting tail-anchored proteins into ER membranes genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
ARF1 YDL192W ADP-ribosylation factor genetic 2 1 1 Phenotypic Suppression, Phenotypic Suppression
CYS3 YAL012W Cystathionine gamma-lyase genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
INP53 YOR109W Polyphosphatidylinositol phosphatase genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
BUG1 YDL099W Cis-golgi localized protein involved in ER to Golgi transport genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
BTS1 YPL069C Geranylgeranyl diphosphate synthase (GGPPS) genetic 2 1 1 Negative Genetic, Negative Genetic
GCS1 YDL226C ADP-ribosylation factor GTPase activating protein (ARF GAP) genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
CCW12 YLR110C Cell wall mannoprotein genetic 2 1 1 Phenotypic Enhancement, Phenotypic Enhancement
FKH1 YIL131C Forkhead family transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MSN2 YMR037C Stress-responsive transcriptional activator regulation 1 1 1 chromatin immunoprecipitation-chip evidence
YAP6 YDR259C Basic leucine zipper (bZIP) transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
YAP1 YML007W Basic leucine zipper (bZIP) transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
CDC28 YBR160W Cyclin-dependent kinase (CDK) catalytic subunit regulation 1 1 1 quantitative mass spectrometry evidence
CDC73 YLR418C Component of the Paf1p complex genetic 1 1 1 Negative Genetic
CTR9 YOL145C Component of the Paf1p complex involved in transcription elongation physical 1 1 1 Affinity Capture-RNA
CDC40 YDR364C Pre-mRNA splicing factor physical 1 1 1 Affinity Capture-RNA
CLF1 YLR117C Member of the NineTeen Complex (NTC) physical 1 1 1 Affinity Capture-RNA
CLF1 YLR117C Member of the NineTeen Complex (NTC) genetic 1 1 1 Negative Genetic
AME1 YBR211C Essential kinetochore protein associated with microtubules and SPBs physical 1 1 1 Affinity Capture-RNA
CHL4 YDR254W Outer kinetochore protein required for chromosome stability physical 1 1 1 Affinity Capture-RNA
CTF19 YPL018W Outer kinetochore protein, needed for accurate chromosome segregation physical 1 1 1 Affinity Capture-RNA
CTF3 YLR381W Outer kinetochore protein that forms a complex with Mcm16p and Mcm22p physical 1 1 1 Affinity Capture-RNA
DSN1 YIR010W Essential component of the outer kinetochore MIND complex physical 1 1 1 Affinity Capture-MS
IKI3 YLR384C Subunit of Elongator complex physical 1 1 1 Affinity Capture-RNA
EAF1 YDR359C Component of the NuA4 histone acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
GCD6 YDR211W Catalytic epsilon subunit of the translation initiation factor eIF2B physical 1 1 1 Affinity Capture-RNA
HOL1 YNR055C Putative transporter in the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
CAB3 YKL088W Subunit of PPCDC and CoA-SPC complexes involved in CoA biosynthesis physical 1 1 1 Affinity Capture-RNA
AMN1 YBR158W Modulator of cell separation and mitotic exit physical 1 1 1 Affinity Capture-RNA
AXL2 YIL140W Integral plasma membrane protein physical 1 1 1 Affinity Capture-RNA
BRR2 YER172C RNA-dependent ATPase RNA helicase (DEIH box) physical 1 1 1 Affinity Capture-RNA
ECM2 YBR065C Pre-mRNA splicing factor physical 1 1 1 Affinity Capture-RNA
EMW1 YNL313C Essential conserved protein with a role in cell wall integrity physical 1 1 1 Affinity Capture-RNA
FRT2 YAL028W Tail-anchored ER membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
DIP2 YLR129W Nucleolar protein physical 1 1 1 Affinity Capture-RNA
DBP7 YKR024C Putative ATP-dependent RNA helicase of the DEAD-box family physical 1 1 1 Affinity Capture-RNA
CSL4 YNL232W Exosome non-catalytic core component genetic 1 1 1 Negative Genetic
DIS3 YOL021C Exosome core complex catalytic subunit physical 1 1 1 Affinity Capture-RNA
HPR1 YDR138W Subunit of THO/TREX complexes physical 1 1 1 Affinity Capture-RNA
ARP7 YPR034W Component of both the SWI/SNF and RSC chromatin remodeling complexes physical 1 1 1 Affinity Capture-MS
ARP9 YMR033W Component of both the SWI/SNF and RSC chromatin remodeling complexes physical 1 1 1 Affinity Capture-RNA
DST1 YGL043W General transcription elongation factor TFIIS genetic 1 1 1 Synthetic Rescue
CEX1 YOR112W Component of nuclear aminoacylation-dependent tRNA export pathway physical 1 1 1 Affinity Capture-RNA
GCD1 YOR260W Gamma subunit of the translation initiation factor eIF2B physical 1 1 1 Affinity Capture-RNA
CFT2 YLR115W Subunit of the mRNA cleavage and polyadenlylation factor (CPF) physical 1 1 1 Affinity Capture-RNA
CFT1 YDR301W RNA-binding subunit of the mRNA cleavage and polyadenylation factor physical 1 1 1 Affinity Capture-RNA
AAH1 YNL141W Adenine deaminase (adenine aminohydrolase) genetic 1 1 1 Negative Genetic
AAR2 YBL074C Component of the U5 snRNP complex physical 1 1 1 Affinity Capture-RNA
BMS1 YPL217C GTPase required for ribosomal subunit synthesis and rRNA processing physical 1 1 1 Affinity Capture-RNA
ACC1 YNR016C Acetyl-CoA carboxylase, biotin containing enzyme physical 1 1 1 Affinity Capture-RNA
APC1 YNL172W Largest subunit of the Anaphase-Promoting Complex/Cyclosome genetic 1 1 1 Negative Genetic
APC2 YLR127C Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
APL2 YKL135C Beta-adaptin subunit of the clathrin-associated protein (AP-1) complex physical 1 1 1 Affinity Capture-RNA
APL1 YJR005W Beta-adaptin physical 1 1 1 Affinity Capture-RNA
APL3 YBL037W Alpha-adaptin physical 1 1 1 Affinity Capture-RNA
APL5 YPL195W Delta adaptin-like subunit of the clathrin associated protein complex physical 1 1 1 Affinity Capture-RNA
APL6 YGR261C Beta3-like subunit of the yeast AP-3 complex physical 1 1 1 Affinity Capture-RNA
ARD1 YHR013C Subunit of protein N-terminal acetyltransferase NatA genetic 1 1 1 Synthetic Growth Defect
ARO1 YDR127W Pentafunctional arom protein physical 1 1 1 Affinity Capture-RNA
ARO1 YDR127W Pentafunctional arom protein genetic 1 1 1 Positive Genetic
BDF1 YLR399C BET family transcriptional regulator physical 1 1 1 Affinity Capture-RNA
ASC1 YMR116C G-protein beta subunit and guanine dissociation inhibitor for Gpa2p physical 1 1 1 Affinity Capture-MS
BEM2 YER155C Rho GTPase activating protein (RhoGAP) physical 1 1 1 Affinity Capture-RNA
BUD14 YAR014C Protein involved in bud-site selection physical 1 1 1 Affinity Capture-RNA
CAF130 YGR134W Subunit of the CCR4-NOT transcriptional regulatory complex physical 1 1 1 Affinity Capture-RNA
BOI2 YER114C Protein involved in polar growth physical 1 1 1 Affinity Capture-RNA
CDC24 YAL041W Guanine nucleotide exchange factor (GEF) for Cdc42p physical 1 1 1 Affinity Capture-RNA
CDC28 YBR160W Cyclin-dependent kinase (CDK) catalytic subunit genetic 1 1 1 Synthetic Growth Defect
CDC10 YCR002C Component of the septin ring, required for cytokinesis genetic 1 1 1 Negative Genetic
CDC45 YLR103C DNA replication initiation factor physical 1 1 1 Affinity Capture-RNA
BNI1 YNL271C Formin physical 1 1 1 Affinity Capture-RNA
HDA1 YNL021W Catalytic subunit of class II HDA1 histone deacetylase complex physical 1 1 1 Affinity Capture-RNA
HDA1 YNL021W Catalytic subunit of class II HDA1 histone deacetylase complex genetic 1 1 1 Positive Genetic
IPI3 YNL182C Component of the Rix1 complex and pre-replicative complexes (pre-RCs) physical 1 1 1 Affinity Capture-RNA
AVO1 YOL078W Component of the membrane-bound TORC2 complex physical 1 1 1 Affinity Capture-RNA
CHC1 YGL206C Clathrin heavy chain physical 1 1 1 Affinity Capture-RNA
CIP1 YPL014W Cyclin-dependent kinase inhibitor physical 1 1 1 Affinity Capture-RNA
COP1 YDL145C Alpha subunit of COPI vesicle coatomer complex physical 1 1 1 Affinity Capture-RNA
CYR1 YJL005W Adenylate cyclase physical 1 1 1 Affinity Capture-RNA
DCP2 YNL118C Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex physical 1 1 1 Affinity Capture-RNA
DNA2 YHR164C ATP-dependent 5'-flap endonuclease and DNA helicase physical 1 1 1 Affinity Capture-RNA
DOA1 YKL213C WD-repeat protein involved in ubiquitin-mediated protein degradation physical 1 1 1 Affinity Capture-RNA
CDC16 YKL022C Subunit of the anaphase-promoting complex/cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
CDC23 YHR166C Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
DPB2 YPR175W Second largest subunit of DNA polymerase II (DNA polymerase epsilon) physical 1 1 1 Affinity Capture-RNA
EDE1 YBL047C Scaffold protein involved in the formation of early endocytic sites physical 1 1 1 Affinity Capture-RNA
EAF3 YPR023C Component of the Rpd3S histone deacetylase complex genetic 1 1 1 Synthetic Lethality
EPL1 YFL024C Subunit of NuA4, an essential histone H4/H2A acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
EXO84 YBR102C Exocyst subunit with dual roles in exocytosis and spliceosome assembly physical 1 1 1 Affinity Capture-RNA
FAP1 YNL023C Protein that binds to Fpr1p physical 1 1 1 Affinity Capture-RNA
FKS1 YLR342W Catalytic subunit of 1,3-beta-D-glucan synthase physical 1 1 1 Affinity Capture-RNA
FTH1 YBR207W Putative high affinity iron transporter physical 1 1 1 Affinity Capture-RNA
GCN2 YDR283C Protein kinase physical 1 1 1 Affinity Capture-RNA
GCN1 YGL195W Positive regulator of the Gcn2p kinase activity physical 1 1 1 Affinity Capture-RNA
GDI1 YER136W GDP dissociation inhibitor physical 1 1 1 Affinity Capture-RNA
GLO3 YER122C ADP-ribosylation factor GTPase activating protein (ARF GAP) genetic 1 1 1 Negative Genetic
ESP1 YGR098C Separase/separin, a caspase-like cysteine protease physical 1 1 1 Affinity Capture-RNA
GTR2 YGR163W Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex physical 1 1 1 Affinity Capture-RNA
DYN1 YKR054C Cytoplasmic heavy chain dynein physical 1 1 1 Two-hybrid
ECM5 YMR176W Subunit of the Snt2C complex physical 1 1 1 Affinity Capture-RNA
HHF1 YBR009C Histone H4 genetic 1 1 1 Synthetic Growth Defect
DHH1 YDL160C Cytoplasmic DEAD-box helicase and mRNA decapping activator physical 1 1 1 Affinity Capture-RNA
AEP1 YMR064W Protein required for expression of the mitochondrial OLI1 gene physical 1 1 1 Affinity Capture-RNA
AEP2 YMR282C Mitochondrial protein physical 1 1 1 Affinity Capture-RNA
ATP22 YDR350C Specific translational activator for the mitochondrial ATP6 mRNA physical 1 1 1 Affinity Capture-RNA
HSH155 YMR288W U2-snRNP associated splicing factor physical 1 1 1 Affinity Capture-RNA
HHF2 YNL030W Histone H4 genetic 1 1 1 Synthetic Growth Defect
HST1 YOL068C NAD(+)-dependent histone deacetylase physical 1 1 1 Affinity Capture-RNA
ACK1 YDL203C Protein that functions in the cell wall integrity pathway physical 1 1 1 Affinity Capture-RNA
IRR1 YIL026C Subunit of the cohesin complex physical 1 1 1 Affinity Capture-RNA
ITC1 YGL133W Subunit of ATP-dependent Isw2p-Itc1p chromatin remodeling complex genetic 1 1 1 Synthetic Growth Defect
NPL6 YMR091C Component of the RSC chromatin remodeling complex genetic 1 1 1 Synthetic Rescue
RPC40 YPR110C RNA polymerase subunit AC40 physical 1 1 1 Affinity Capture-MS
RSC2 YLR357W Component of the RSC chromatin remodeling complex genetic 1 1 1 Synthetic Rescue
RSC4 YKR008W Component of the RSC chromatin remodeling complex genetic 1 1 1 Synthetic Rescue
SIN3 YOL004W Component of both the Rpd3S and Rpd3L histone deacetylase complexes genetic 1 1 1 Negative Genetic
MAS1 YLR163C Beta subunit of the mitochondrial processing protease (MPP) physical 1 1 1 Affinity Capture-MS
NHP10 YDL002C Non-essential INO80 chromatin remodeling complex subunit physical 1 1 1 Affinity Capture-MS
NHP6B YBR089C-A High-mobility group (HMG) protein physical 1 1 1 Affinity Capture-MS
RFX1 YLR176C Major transcriptional repressor of DNA-damage-regulated genes physical 1 1 1 Affinity Capture-MS
SMT3 YDR510W Ubiquitin-like protein of the SUMO family physical 1 1 1 Affinity Capture-MS
TOP1 YOL006C Topoisomerase I physical 1 1 1 Affinity Capture-MS
PRI1 YIR008C Subunit of DNA primase physical 1 1 1 Affinity Capture-MS
PRI1 YIR008C Subunit of DNA primase genetic 1 1 1 Positive Genetic
LGE1 YPL055C Protein involved in histone H2B ubiquitination physical 1 1 1 Affinity Capture-MS
RSC3 YDR303C Component of the RSC chromatin remodeling complex genetic 1 1 1 Synthetic Rescue
NAB2 YGL122C Nuclear polyadenylated RNA-binding protein physical 1 1 1 Affinity Capture-RNA
NAB2 YGL122C Nuclear polyadenylated RNA-binding protein genetic 1 1 1 Synthetic Rescue
RFA1 YAR007C Subunit of heterotrimeric Replication Protein A (RPA) physical 1 1 1 Affinity Capture-MS
LRS4 YDR439W Nucleolar protein that forms a complex with Csm1p physical 1 1 1 Affinity Capture-MS
KIN3 YAR018C Nonessential serine/threonine protein kinase physical 1 1 1 Two-hybrid
NNF1 YJR112W Essential component of the outer kinetochore MIND complex physical 1 1 1 Two-hybrid
NUF2 YOL069W Component of the kinetochore-associated Ndc80 complex physical 1 1 1 Two-hybrid
TYE7 YOR344C Serine-rich protein that contains a bHLH DNA binding motif physical 1 1 1 Two-hybrid
SRP1 YNL189W Karyopherin alpha homolog physical 1 1 1 Affinity Capture-Western
SBP1 YHL034C Protein that binds eIF4G and has a role in repression of translation physical 1 1 1 Affinity Capture-RNA
SPT21 YMR179W Protein with a role in transcriptional silencing physical 1 1 1 Affinity Capture-MS
SSB2 YNL209W Cytoplasmic ATPase that is a ribosome-associated molecular chaperone physical 1 1 1 Co-purification
MEX67 YPL169C Poly(A)RNA binding protein involved in nuclear mRNA export genetic 1 1 1 Synthetic Rescue
RRP6 YOR001W Nuclear exosome exonuclease component genetic 1 1 1 Phenotypic Enhancement
YAL064W-B YAL064W-B Fungal-specific protein of unknown function physical 1 1 1 Affinity Capture-RNA
LTE1 YAL024C Protein similar to GDP/GTP exchange factors physical 1 1 1 Affinity Capture-RNA
PSK1 YAL017W PAS domain-containing serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
YBL113C YBL113C Helicase-like protein encoded within the telomeric Y' element physical 1 1 1 Affinity Capture-RNA
YBL112C YBL112C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YBL111C YBL111C Helicase-like protein encoded within the telomeric Y' element physical 1 1 1 Affinity Capture-RNA
SEA4 YBL104C Subunit of SEACAT, a subcomplex of the SEA complex physical 1 1 1 Affinity Capture-RNA
RTG3 YBL103C bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways physical 1 1 1 Affinity Capture-RNA
YBL081W YBL081W Non-essential protein of unknown function physical 1 1 1 Affinity Capture-RNA
YBL081W YBL081W Non-essential protein of unknown function genetic 1 1 1 Negative Genetic
SSA3 YBL075C ATPase involved in protein folding and the response to stress physical 1 1 1 Affinity Capture-RNA
RRN6 YBL014C Component of the core factor (CF) rDNA transcription factor complex physical 1 1 1 Affinity Capture-RNA
SCT1 YBL011W Glycerol 3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase physical 1 1 1 Affinity Capture-RNA
SPT7 YBR081C Subunit of the SAGA transcriptional regulatory complex physical 1 1 1 Affinity Capture-RNA
TEC1 YBR083W Transcription factor targeting filamentation genes and Ty1 expression physical 1 1 1 Affinity Capture-RNA
SMY2 YBR172C GYF domain protein physical 1 1 1 Affinity Capture-RNA
PRP5 YBR237W RNA helicase in the DEAD-box family physical 1 1 1 Affinity Capture-RNA
RIF1 YBR275C Protein involved in control of DNA replication physical 1 1 1 Affinity Capture-RNA
SNF5 YBR289W Subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
PCA1 YBR295W Cadmium transporting P-type ATPase physical 1 1 1 Affinity Capture-RNA
MRC1 YCL061C S-phase checkpoint protein required for DNA replication physical 1 1 1 Affinity Capture-RNA
LRE1 YCL051W Protein involved in control of cell wall structure and stress response physical 1 1 1 Affinity Capture-RNA
TAF2 YCR042C TFIID subunit (150 kDa) physical 1 1 1 Affinity Capture-RNA
TVS1 YCR061W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
TVS1 YCR061W Protein of unknown function genetic 1 1 1 Negative Genetic
KIN82 YCR091W Putative serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
PRR2 YDL214C Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
SNF3 YDL194W Plasma membrane low glucose sensor, regulates glucose transport physical 1 1 1 Affinity Capture-RNA
RPO21 YDL140C RNA polymerase II largest subunit B220 physical 1 1 1 Affinity Capture-RNA
PHO2 YDL106C Homeobox transcription factor physical 1 1 1 Affinity Capture-RNA
PHO2 YDL106C Homeobox transcription factor genetic 1 1 1 Negative Genetic
STP4 YDL048C Protein containing a Kruppel-type zinc-finger domain physical 1 1 1 Affinity Capture-RNA
SLM3 YDL033C tRNA-specific 2-thiouridylase physical 1 1 1 Affinity Capture-RNA
SLM3 YDL033C tRNA-specific 2-thiouridylase genetic 1 1 1 Negative Genetic
OSH2 YDL019C Member of an oxysterol-binding protein family with seven members physical 1 1 1 Affinity Capture-RNA
LYS14 YDR034C Transcriptional activator involved in regulating lysine biosynthesis physical 1 1 1 Affinity Capture-RNA
SAN1 YDR143C Ubiquitin-protein ligase physical 1 1 1 Affinity Capture-RNA
STB3 YDR169C Ribosomal RNA processing element (RRPE)-binding protein physical 1 1 1 Affinity Capture-RNA
UME6 YDR207C Rpd3L histone deacetylase complex subunit physical 1 1 1 Affinity Capture-RNA
UPC2 YDR213W Sterol regulatory element binding protein physical 1 1 1 Affinity Capture-RNA
VHS1 YDR247W Cytoplasmic serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
SSD1 YDR293C Translational repressor physical 1 1 1 Affinity Capture-RNA
SUM1 YDR310C Transcriptional repressor that regulates middle-sporulation genes physical 1 1 1 Affinity Capture-RNA
RAD34 YDR314C Protein involved in nucleotide excision repair (NER) physical 1 1 1 Affinity Capture-RNA
SWR1 YDR334W Swi2/Snf2-related ATPase physical 1 1 1 Affinity Capture-RNA
SBE2 YDR351W Protein required for bud growth physical 1 1 1 Affinity Capture-RNA
SAC7 YDR389W GTPase activating protein (GAP) for Rho1p physical 1 1 1 Affinity Capture-RNA
PDR15 YDR406W Plasma membrane ATP binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
SIZ1 YDR409W SUMO E3 ligase physical 1 1 1 Affinity Capture-RNA
PPZ2 YDR436W Serine/threonine protein phosphatase Z, isoform of Ppz1p physical 1 1 1 Affinity Capture-RNA
SSN2 YDR443C Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
TOM1 YDR457W E3 ubiquitin ligase of the hect-domain class physical 1 1 1 Affinity Capture-RNA
SPP41 YDR464W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
PKH3 YDR466W Protein kinase with similarity to mammalian PDK1 and yeast Pkh1p/Phk2p physical 1 1 1 Affinity Capture-RNA
PAC11 YDR488C Dynein intermediate chain, microtubule motor protein physical 1 1 1 Affinity Capture-RNA
PSP1 YDR505C Asn and gln rich protein of unknown function physical 1 1 1 Affinity Capture-RNA
YRF1-1 YDR545W Helicase encoded by the Y' element of subtelomeric regions physical 1 1 1 Affinity Capture-RNA
YEL077C YEL077C Helicase-like protein encoded within the telomeric Y' element physical 1 1 1 Affinity Capture-RNA
YEL076C-A YEL076C-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YEL076C YEL076C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YEL023C YEL023C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MIT1 YEL007W Transcriptional regulator of pseudohyphal growth physical 1 1 1 Affinity Capture-RNA
SEC3 YER008C Subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
SAK1 YER129W Upstream serine/threonine kinase for the SNF1 complex physical 1 1 1 Affinity Capture-RNA
PET122 YER153C Mitochondrial translational activator specific for the COX3 mRNA physical 1 1 1 Affinity Capture-RNA
YER158C YER158C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RAD4 YER162C Damaged-DNA binding subunit of Nuclear Excision Repair Factor 2 physical 1 1 1 Affinity Capture-RNA
RPH1 YER169W JmjC domain-containing histone demethylase physical 1 1 1 Affinity Capture-RNA
YRF1-2 YER190W Helicase encoded by the Y' element of subtelomeric regions physical 1 1 1 Affinity Capture-RNA
YFL066C YFL066C Helicase-like protein encoded within the telomeric Y' element physical 1 1 1 Affinity Capture-RNA
YFL065C YFL065C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YFL064C YFL064C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
ZNF1 YFL052W Zinc cluster transcription factor that regulates respiratory growth physical 1 1 1 Affinity Capture-RNA
RPO41 YFL036W Mitochondrial RNA polymerase physical 1 1 1 Affinity Capture-RNA
MIL1 YFL034W Predicted lipase physical 1 1 1 Affinity Capture-RNA
RIM15 YFL033C Protein kinase involved in cell proliferation in response to nutrients physical 1 1 1 Affinity Capture-RNA
SAP155 YFR040W Protein required for function of the Sit4p protein phosphatase physical 1 1 1 Affinity Capture-RNA
MTO1 YGL236C Mitochondrial protein physical 1 1 1 Affinity Capture-RNA
MDS3 YGL197W Putative component of the TOR regulatory pathway physical 1 1 1 Affinity Capture-RNA
MPT5 YGL178W mRNA-binding protein of the PUF family physical 1 1 1 Affinity Capture-RNA
SAE2 YGL175C Endonuclease required for telomere elongation physical 1 1 1 Affinity Capture-RNA
ROG1 YGL144C Lipase with specificity for monoacylglycerol physical 1 1 1 Affinity Capture-RNA
YGL140C YGL140C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SNT2 YGL131C Subunit of Snt2C complex, RING finger ubiquitin ligase (E3) physical 1 1 1 Affinity Capture-RNA
SPC105 YGL093W Subunit of a kinetochore-microtubule binding complex physical 1 1 1 Affinity Capture-RNA
PUS2 YGL063W Mitochondrial tRNA:pseudouridine synthase physical 1 1 1 Affinity Capture-RNA
MIG1 YGL035C Transcription factor involved in glucose repression physical 1 1 1 Affinity Capture-RNA
SCW11 YGL028C Cell wall protein with similarity to glucanases physical 1 1 1 Affinity Capture-RNA
MSB2 YGR014W Mucin family member involved in various signaling pathways physical 1 1 1 Affinity Capture-RNA
RSC1 YGR056W Component of the RSC chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
YAP1802 YGR241C Protein of the AP180 family, involved in clathrin cage assembly physical 1 1 1 Affinity Capture-RNA
SLH1 YGR271W Subunit of ribosome-associated quality control trigger complex (RQT) physical 1 1 1 Affinity Capture-RNA
YRF1-3 YGR296W Helicase encoded by the Y' element of subtelomeric regions physical 1 1 1 Affinity Capture-RNA
YHL050C YHL050C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YHL049C YHL049C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
OCA5 YHL029C Cytoplasmic protein required for replication of Brome mosaic virus physical 1 1 1 Affinity Capture-RNA
WSC4 YHL028W Endoplasmic reticulum (ER) membrane protein physical 1 1 1 Affinity Capture-RNA
YHL008C YHL008C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
LAM4 YHR080C Sterol-binding protein that localizes to puncta in the cortical ER physical 1 1 1 Affinity Capture-RNA
KIC1 YHR102W Protein kinase of the PAK/Ste20 family, required for cell integrity physical 1 1 1 Affinity Capture-RNA
KOG1 YHR186C Subunit of TORC1 physical 1 1 1 Affinity Capture-RNA
SCH9 YHR205W AGC family protein kinase physical 1 1 1 Affinity Capture-RNA
SKN7 YHR206W Nuclear response regulator and transcription factor physical 1 1 1 Affinity Capture-RNA
YHR218W YHR218W Helicase-like protein encoded within the telomeric Y' element physical 1 1 1 Affinity Capture-RNA
YHR219W YHR219W Putative protein of unknown function with similarity to helicases physical 1 1 1 Affinity Capture-RNA
YIL177C YIL177C Putative Y' element ATP-dependent helicase physical 1 1 1 Affinity Capture-RNA
VTH1 YIL173W Putative membrane glycoprotein physical 1 1 1 Affinity Capture-RNA
MCM10 YIL150C Essential chromatin-associated protein physical 1 1 1 Affinity Capture-RNA
SLN1 YIL147C Transmembrane histidine phosphotransfer kinase and osmosensor physical 1 1 1 Affinity Capture-RNA
XBP1 YIL101C Transcriptional repressor physical 1 1 1 Affinity Capture-RNA
PRK1 YIL095W Ser/Thr protein kinase physical 1 1 1 Affinity Capture-RNA
VHR1 YIL056W Transcriptional activator physical 1 1 1 Affinity Capture-RNA
SYG1 YIL047C Plasma membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
YIA6 YIL006W Mitochondrial NAD+ transporter physical 1 1 1 Affinity Capture-RNA
VLD1 YIR014W Component of Dsc E3 ligase complex in vacuolar membranes physical 1 1 1 Affinity Capture-RNA
YJL225C YJL225C Putative Y' element ATP-dependent helicase physical 1 1 1 Affinity Capture-RNA
OPT1 YJL212C Proton-coupled oligopeptide transporter of the plasma membrane physical 1 1 1 Affinity Capture-RNA
UBP12 YJL197W Ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
SET2 YJL168C Histone methyltransferase with a role in transcriptional elongation physical 1 1 1 Affinity Capture-RNA
TRK1 YJL129C Component of the Trk1p-Trk2p potassium transport system physical 1 1 1 Affinity Capture-RNA
SRS2 YJL092W DNA helicase and DNA-dependent ATPase physical 1 1 1 Affinity Capture-RNA
TAX4 YJL083W EH domain-containing protein physical 1 1 1 Affinity Capture-RNA
RAV1 YJR033C Subunit of RAVE complex (Rav1p, Rav2p, Skp1p) physical 1 1 1 Affinity Capture-RNA
RAD26 YJR035W Protein involved in transcription-coupled nucleotide excision repair physical 1 1 1 Affinity Capture-RNA
PTK2 YJR059W Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
PTK2 YJR059W Serine/threonine protein kinase genetic 1 1 1 Negative Genetic
JSN1 YJR091C Member of the Puf family of RNA-binding proteins physical 1 1 1 Affinity Capture-RNA
PTK1 YKL198C Putative serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
PEX1 YKL197C AAA-peroxin physical 1 1 1 Affinity Capture-RNA
LST4 YKL176C Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p physical 1 1 1 Affinity Capture-RNA
LST4 YKL176C Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p genetic 1 1 1 Negative Genetic
NNK1 YKL171W Protein kinase physical 1 1 1 Affinity Capture-RNA
NUP100 YKL068W FG-nucleoporin component of central core of the nuclear pore complex physical 1 1 1 Affinity Capture-RNA
RGT1 YKL038W Glucose-responsive transcription factor physical 1 1 1 Affinity Capture-RNA
SPT23 YKL020C ER membrane protein involved in regulation of OLE1 transcription physical 1 1 1 Affinity Capture-RNA
TRK2 YKR050W Component of the Trk1p-Trk2p potassium transport system physical 1 1 1 Affinity Capture-RNA
YLL067C YLL067C Putative Y' element ATP-dependent helicase physical 1 1 1 Affinity Capture-RNA
YLL066C YLL066C Putative Y' element ATP-dependent helicase physical 1 1 1 Affinity Capture-RNA
VPS13 YLL040C Lipid transport protein involved in prospore membrane morphogenesis physical 1 1 1 Affinity Capture-RNA
SPA2 YLL021W Component of the polarisome physical 1 1 1 Affinity Capture-RNA
KNS1 YLL019C Protein kinase involved in negative regulation of PolIII transcription physical 1 1 1 Affinity Capture-RNA
PUF3 YLL013C Protein of the mitochondrial outer surface physical 1 1 1 Affinity Capture-RNA
SSK1 YLR006C Cytoplasmic phosphorelay intermediate osmosensor and regulator physical 1 1 1 Affinity Capture-RNA
IZH3 YLR023C Membrane protein involved in zinc ion homeostasis physical 1 1 1 Affinity Capture-RNA
MEF1 YLR069C Mitochondrial elongation factor involved in translational elongation physical 1 1 1 Affinity Capture-RNA
RAX2 YLR084C Protein required for the maintenance of bud site selection physical 1 1 1 Affinity Capture-RNA
KIN2 YLR096W S/T protein kinase physical 1 1 1 Affinity Capture-RNA
REA1 YLR106C Huge dynein-related AAA-type ATPase (midasin) physical 1 1 1 Affinity Capture-RNA
YLR156W YLR156W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YLR159W YLR159W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YLR161W YLR161W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MSC3 YLR219W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
TOP3 YLR234W DNA Topoisomerase III physical 1 1 1 Affinity Capture-RNA
MID2 YLR332W O-glycosylated plasma membrane protein physical 1 1 1 Affinity Capture-RNA
SWC7 YLR385C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
YLR464W YLR464W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YRF1-4 YLR466W Helicase encoded by the Y' element of subtelomeric regions physical 1 1 1 Affinity Capture-RNA
YRF1-5 YLR467W Helicase encoded by the Y' element of subtelomeric regions physical 1 1 1 Affinity Capture-RNA
YML133C YML133C Putative Y' element ATP-dependent helicase physical 1 1 1 Affinity Capture-RNA
NAB6 YML117W Putative RNA-binding protein physical 1 1 1 Affinity Capture-RNA
TSL1 YML100W Large subunit of trehalose 6-phosphate synthase/phosphatase complex physical 1 1 1 Affinity Capture-RNA
YML082W YML082W Putative protein predicted to have carbon-sulfur lyase activity physical 1 1 1 Affinity Capture-RNA
WAR1 YML076C Homodimeric Zn2Cys6 zinc finger transcription factor physical 1 1 1 Affinity Capture-RNA
WAR1 YML076C Homodimeric Zn2Cys6 zinc finger transcription factor genetic 1 1 1 Negative Genetic
NTE1 YML059C Serine esterase physical 1 1 1 Affinity Capture-RNA
SRC1 YML034W Inner nuclear membrane protein physical 1 1 1 Affinity Capture-RNA
YOX1 YML027W Homeobox transcriptional repressor physical 1 1 1 Affinity Capture-RNA
SOK2 YMR016C Nuclear protein that negatively regulates pseudohyphal differentiation physical 1 1 1 Affinity Capture-RNA
MSN2 YMR037C Stress-responsive transcriptional activator physical 1 1 1 Affinity Capture-RNA
STV1 YMR054W Subunit a of the vacuolar-ATPase V0 domain physical 1 1 1 Affinity Capture-RNA
MUB1 YMR100W MYND domain-containing protein physical 1 1 1 Affinity Capture-RNA
MSS11 YMR164C Transcription factor physical 1 1 1 Affinity Capture-RNA
PAH1 YMR165C Mg2+-dependent phosphatidate (PA) phosphatase physical 1 1 1 Affinity Capture-RNA
SGS1 YMR190C RecQ family nucleolar DNA helicase physical 1 1 1 Affinity Capture-RNA
SGS1 YMR190C RecQ family nucleolar DNA helicase genetic 1 1 1 Negative Genetic
SKY1 YMR216C SR protein kinase (SRPK) physical 1 1 1 Affinity Capture-RNA
TRS130 YMR218C Component of transport protein particle (TRAPP) complex II physical 1 1 1 Affinity Capture-RNA
MRE11 YMR224C Nuclease subunit of the MRX complex with Rad50p and Xrs2p physical 1 1 1 Affinity Capture-RNA
TDA1 YMR291W Protein kinase of unknown cellular role physical 1 1 1 Affinity Capture-RNA
YRF1-6 YNL339C Helicase encoded by the Y' element of subtelomeric regions physical 1 1 1 Affinity Capture-RNA
VNX1 YNL321W Calcium/H+ antiporter localized to the endoplasmic reticulum membrane physical 1 1 1 Affinity Capture-RNA
WSC2 YNL283C Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway physical 1 1 1 Affinity Capture-RNA
KEX2 YNL238W Kexin, a subtilisin-like protease (proprotein convertase) physical 1 1 1 Affinity Capture-RNA
SKO1 YNL167C Basic leucine zipper transcription factor of the ATF/CREB family physical 1 1 1 Affinity Capture-RNA
YNL144C YNL144C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MET4 YNL103W Leucine-zipper transcriptional activator physical 1 1 1 Affinity Capture-RNA
NST1 YNL091W Translational inhibitor and suppressor of proteasome-assembly defects physical 1 1 1 Affinity Capture-RNA
NST1 YNL091W Translational inhibitor and suppressor of proteasome-assembly defects genetic 1 1 1 Negative Genetic
MLF3 YNL074C Serine-rich protein of unknown function physical 1 1 1 Affinity Capture-RNA
LRO1 YNR008W Acyltransferase that converts diacylglycerol to triacylglycerol (TGA) physical 1 1 1 Affinity Capture-RNA
YNR014W YNR014W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SSK2 YNR031C MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway physical 1 1 1 Affinity Capture-RNA
PUL4 YNR063W Putative zinc-cluster transcription factor physical 1 1 1 Affinity Capture-RNA
YNR065C YNR065C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RTC1 YOL138C Subunit of SEACAT, a subcomplex of the SEA complex physical 1 1 1 Affinity Capture-RNA
WSC3 YOL105C Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway physical 1 1 1 Affinity Capture-RNA
PLB3 YOL011W Phospholipase B (lysophospholipase) involved in lipid metabolism physical 1 1 1 Affinity Capture-RNA
SFL1 YOR140W Transcriptional repressor and activator physical 1 1 1 Affinity Capture-RNA
NFI1 YOR156C SUMO E3 ligase physical 1 1 1 Affinity Capture-RNA
LAS17 YOR181W Actin assembly factor physical 1 1 1 Affinity Capture-RNA
RFC1 YOR217W Subunit of heteropentameric Replication factor C (RF-C) physical 1 1 1 Affinity Capture-RNA
SNF2 YOR290C Catalytic subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
SNF2 YOR290C Catalytic subunit of the SWI/SNF chromatin remodeling complex genetic 1 1 1 Phenotypic Enhancement
YPK9 YOR291W Vacuolar protein with a possible role in sequestering heavy metals physical 1 1 1 Affinity Capture-RNA
MIP1 YOR330C Mitochondrial DNA polymerase gamma physical 1 1 1 Affinity Capture-RNA
TEA1 YOR337W Ty1 enhancer activator involved in Ty enhancer-mediated transcription physical 1 1 1 Affinity Capture-RNA
PYK2 YOR347C Pyruvate kinase physical 1 1 1 Affinity Capture-RNA
YRF1-8 YOR396W One of several telomeric Y' element-encoded DNA helicases physical 1 1 1 Affinity Capture-RNA
YRF1-7 YPL283C Helicase encoded by the Y' element of subtelomeric regions physical 1 1 1 Affinity Capture-RNA
PCL8 YPL219W Cyclin physical 1 1 1 Affinity Capture-RNA
YIG1 YPL201C Protein that interacts with glycerol 3-phosphatase physical 1 1 1 Affinity Capture-RNA
TBF1 YPL128C Telobox-containing general regulatory factor physical 1 1 1 Affinity Capture-RNA
SEC16 YPL085W COPII vesicle coat protein required for ER transport vesicle budding physical 1 1 1 Affinity Capture-RNA
MCM4 YPR019W Essential helicase component of heterohexameric MCM2-7 complexes physical 1 1 1 Affinity Capture-RNA
PUF2 YPR042C PUF family mRNA-binding protein physical 1 1 1 Affinity Capture-RNA
SYT1 YPR095C Guanine nucleotide exchange factor (GEF) for Arf proteins physical 1 1 1 Affinity Capture-RNA
YPR202W YPR202W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YPR203W YPR203W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YPR204W YPR204W DNA helicase encoded within the telomeric Y' element physical 1 1 1 Affinity Capture-RNA
OAF1 YAL051W Oleate-activated transcription factor physical 1 1 1 Affinity Capture-RNA
PTA1 YAL043C Subunit of holo-CPF physical 1 1 1 Affinity Capture-RNA
MYO4 YAL029C Type V myosin motor involved in actin-based transport of cargos physical 1 1 1 Affinity Capture-RNA
VPS8 YAL002W Membrane-binding component of the CORVET complex physical 1 1 1 Affinity Capture-RNA
TFC3 YAL001C Subunit of RNA polymerase III transcription initiation factor complex physical 1 1 1 Affinity Capture-RNA
SWD1 YAR003W Subunit of the COMPASS (Set1C) complex physical 1 1 1 Affinity Capture-RNA
YAR023C YAR023C Putative integral membrane protein physical 1 1 1 Affinity Capture-RNA
SWH1 YAR042W Protein similar to mammalian oxysterol-binding protein physical 1 1 1 Affinity Capture-RNA
YAR068W YAR068W Fungal-specific protein of unknown function physical 1 1 1 Affinity Capture-RNA
PKC1 YBL105C Protein serine/threonine kinase physical 1 1 1 Affinity Capture-RNA
PET112 YBL080C Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex physical 1 1 1 Affinity Capture-RNA
NUP170 YBL079W Subunit of inner ring of nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
UBP13 YBL067C Ubiquitin-specific protease that cleaves Ub-protein fusions physical 1 1 1 Affinity Capture-RNA
KIP1 YBL063W Kinesin-related motor protein physical 1 1 1 Affinity Capture-RNA
SKT5 YBL061C Activator of Chs3p (chitin synthase III) during vegetative growth physical 1 1 1 Affinity Capture-RNA
YEL1 YBL060W Guanine nucleotide exchange factor specific for Arf3p physical 1 1 1 Affinity Capture-RNA
TOD6 YBL054W PAC motif binding protein involved in rRNA and ribosome biogenesis physical 1 1 1 Affinity Capture-RNA
TOD6 YBL054W PAC motif binding protein involved in rRNA and ribosome biogenesis genetic 1 1 1 Negative Genetic
SAS3 YBL052C Histone acetyltransferase catalytic subunit of NuA3 complex physical 1 1 1 Affinity Capture-RNA
POL12 YBL035C B subunit of DNA polymerase alpha-primase complex physical 1 1 1 Affinity Capture-RNA
POL12 YBL035C B subunit of DNA polymerase alpha-primase complex genetic 1 1 1 Negative Genetic
PIM1 YBL022C ATP-dependent Lon protease physical 1 1 1 Affinity Capture-RNA
RFT1 YBL020W Membrane protein required for translocation of Man5GlcNac2-PP-Dol physical 1 1 1 Affinity Capture-RNA
PEP1 YBL017C Type I transmembrane sorting receptor for multiple vacuolar hydrolases physical 1 1 1 Affinity Capture-RNA
SLA1 YBL007C Cytoskeletal protein binding protein physical 1 1 1 Affinity Capture-RNA
PDR3 YBL005W Transcriptional activator of the pleiotropic drug resistance network physical 1 1 1 Affinity Capture-RNA
UTP20 YBL004W Component of the small-subunit (SSU) processome physical 1 1 1 Affinity Capture-RNA
NTH2 YBR001C Putative neutral trehalase, required for thermotolerance physical 1 1 1 Affinity Capture-RNA
UGA2 YBR006W Succinate semialdehyde dehydrogenase physical 1 1 1 Affinity Capture-RNA
YPK3 YBR028C AGC kinase physical 1 1 1 Affinity Capture-RNA
QDR3 YBR043C Multidrug transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
TCM62 YBR044C Protein involved in assembly of the succinate dehydrogenase complex physical 1 1 1 Affinity Capture-RNA
REB1 YBR049C RNA polymerase I enhancer binding protein physical 1 1 1 Affinity Capture-RNA
PRP6 YBR055C Splicing factor physical 1 1 1 Affinity Capture-RNA
UBP14 YBR058C Ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
TAT1 YBR069C Amino acid transporter for valine, leucine, isoleucine, and tyrosine physical 1 1 1 Affinity Capture-RNA
RDH54 YBR073W DNA-dependent ATPase physical 1 1 1 Affinity Capture-RNA
PFF1 YBR074W Multi-spanning vacuolar membrane protease physical 1 1 1 Affinity Capture-RNA
PBY1 YBR094W Putative tubulin tyrosine ligase associated with P-bodies physical 1 1 1 Affinity Capture-RNA
VPS15 YBR097W Serine/threonine protein kinase involved in vacuolar protein sorting physical 1 1 1 Affinity Capture-RNA
MMS4 YBR098W Subunit of structure-specific Mms4p-Mus81p endonuclease physical 1 1 1 Affinity Capture-RNA
SIF2 YBR103W WD40 repeat-containing subunit of Set3C histone deacetylase complex physical 1 1 1 Affinity Capture-RNA
VID24 YBR105C GID Complex regulatory subunit physical 1 1 1 Affinity Capture-RNA
RAD16 YBR114W Nucleotide excision repair (NER) protein physical 1 1 1 Affinity Capture-RNA
LYS2 YBR115C Alpha aminoadipate reductase physical 1 1 1 Affinity Capture-RNA
MAK5 YBR142W Essential nucleolar protein physical 1 1 1 Affinity Capture-RNA
UBS1 YBR165W Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p physical 1 1 1 Affinity Capture-RNA
RIM2 YBR192W Mitochondrial pyrimidine nucleotide transporter physical 1 1 1 Affinity Capture-RNA
MCM7 YBR202W Component of the Mcm2-7 hexameric helicase complex physical 1 1 1 Affinity Capture-RNA
NGR1 YBR212W RNA binding protein that negatively regulates growth rate physical 1 1 1 Affinity Capture-RNA
SDS24 YBR214W Protein involved in cell separation during budding physical 1 1 1 Affinity Capture-RNA
YBP1 YBR216C Protein involved in cellular response to oxidative stress physical 1 1 1 Affinity Capture-RNA
PYC2 YBR218C Pyruvate carboxylase isoform physical 1 1 1 Affinity Capture-RNA
YBR225W YBR225W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
ROT2 YBR229C Glucosidase II catalytic subunit physical 1 1 1 Affinity Capture-RNA
VHC1 YBR235W Vacuolar membrane cation-chloride cotransporter (CCC) physical 1 1 1 Affinity Capture-RNA
YBR238C YBR238C Mitochondrial membrane protein physical 1 1 1 Affinity Capture-RNA
ISW1 YBR245C ATPase subunit of imitation-switch (ISWI) class chromatin remodelers physical 1 1 1 Affinity Capture-RNA
SPO23 YBR250W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
MTC4 YBR255W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
YBR259W YBR259W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RGD1 YBR260C GTPase-activating protein (RhoGAP) for Rho3p and Rho4p physical 1 1 1 Affinity Capture-RNA
PPS1 YBR276C Protein phosphatase physical 1 1 1 Affinity Capture-RNA
SAF1 YBR280C F-Box protein involved in proteasome-dependent degradation of Aah1p physical 1 1 1 Affinity Capture-RNA
SSH1 YBR283C Subunit of the Ssh1 translocon complex physical 1 1 1 Affinity Capture-RNA
YBR284W YBR284W Putative metallo-dependent hydrolase superfamily protein physical 1 1 1 Affinity Capture-RNA
VBA2 YBR293W Permease of basic amino acids in the vacuolar membrane physical 1 1 1 Affinity Capture-RNA
MAL33 YBR297W MAL-activator protein physical 1 1 1 Affinity Capture-RNA
MAL31 YBR298C Maltose permease physical 1 1 1 Affinity Capture-RNA
MAL32 YBR299W Maltase (alpha-D-glucosidase) physical 1 1 1 Affinity Capture-RNA
PBN1 YCL052C Component of glycosylphosphatidylinositol-mannosyltransferase I physical 1 1 1 Affinity Capture-RNA
YCL021W-A YCL021W-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SGF29 YCL010C Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes physical 1 1 1 Affinity Capture-RNA
YCL002C YCL002C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SAT4 YCR008W Ser/Thr protein kinase involved in salt tolerance, nutrient response physical 1 1 1 Affinity Capture-RNA
YCR023C YCR023C Vacuolar membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
NPP1 YCR026C Nucleotide pyrophosphatase/phosphodiesterase physical 1 1 1 Affinity Capture-RNA
SYP1 YCR030C Negative regulator of WASP-Arp23 complex physical 1 1 1 Affinity Capture-RNA
PHO87 YCR037C Low-affinity inorganic phosphate (Pi) transporter physical 1 1 1 Affinity Capture-RNA
PWP2 YCR057C Conserved 90S pre-ribosomal component physical 1 1 1 Affinity Capture-RNA
SED4 YCR067C Integral ER membrane protein that stimulates Sar1p GTPase activity physical 1 1 1 Affinity Capture-RNA
SSK22 YCR073C MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway physical 1 1 1 Affinity Capture-RNA
PAT1 YCR077C Deadenylation-dependent mRNA-decapping factor physical 1 1 1 Affinity Capture-RNA
PAT1 YCR077C Deadenylation-dependent mRNA-decapping factor genetic 1 1 1 Negative Genetic
PTC6 YCR079W Mitochondrial type 2C protein phosphatase (PP2C) physical 1 1 1 Affinity Capture-RNA
SRB8 YCR081W Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
MSH3 YCR092C Mismatch repair protein physical 1 1 1 Affinity Capture-RNA
YCR099C YCR099C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YCR101C YCR101C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RDS1 YCR106W Putative zinc cluster transcription factor physical 1 1 1 Affinity Capture-RNA
MPH2 YDL247W Alpha-glucoside permease physical 1 1 1 Affinity Capture-RNA
MFG1 YDL233W Regulator of filamentous growth physical 1 1 1 Affinity Capture-RNA
WHI4 YDL224C Putative RNA binding protein physical 1 1 1 Affinity Capture-RNA
RRI1 YDL216C Catalytic subunit of the COP9 signalosome (CSN) complex physical 1 1 1 Affinity Capture-RNA
YDL206W YDL206W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RTN2 YDL204W Reticulon protein physical 1 1 1 Affinity Capture-RNA
YDL199C YDL199C Putative transporter physical 1 1 1 Affinity Capture-RNA
SEC31 YDL195W Component of the Sec13p-Sec31p complex of the COPII vesicle coat physical 1 1 1 Affinity Capture-RNA
UFD2 YDL190C Ubiquitin (Ub) chain assembly factor (E4) physical 1 1 1 Affinity Capture-RNA
YDL180W YDL180W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PCL9 YDL179W Cyclin physical 1 1 1 Affinity Capture-RNA
MSH5 YDL154W Protein of the MutS family physical 1 1 1 Affinity Capture-RNA
LDB17 YDL146W Protein involved in the regulation of endocytosis physical 1 1 1 Affinity Capture-RNA
RGT2 YDL138W Plasma membrane high glucose sensor that regulates glucose transport physical 1 1 1 Affinity Capture-RNA
UBP1 YDL122W Ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
NUP84 YDL116W Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
NUP84 YDL116W Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) genetic 1 1 1 Negative Genetic
TRM3 YDL112W 2'-O-ribose methyltransferase physical 1 1 1 Affinity Capture-RNA
TRM3 YDL112W 2'-O-ribose methyltransferase genetic 1 1 1 Negative Genetic
YDL109C YDL109C Putative lipase physical 1 1 1 Affinity Capture-RNA
POL3 YDL102W Catalytic subunit of DNA polymerase delta physical 1 1 1 Affinity Capture-RNA
PMT1 YDL095W Protein O-mannosyltransferase of the ER membrane physical 1 1 1 Affinity Capture-RNA
PMT5 YDL093W Protein O-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
NDE2 YDL085W Mitochondrial external NADH dehydrogenase physical 1 1 1 Affinity Capture-RNA
THI3 YDL080C Regulatory protein that binds Pdc2p and Thi2p transcription factors physical 1 1 1 Affinity Capture-RNA
MRK1 YDL079C Glycogen synthase kinase 3 (GSK-3) homolog physical 1 1 1 Affinity Capture-RNA
VAM6 YDL077C Guanine nucleotide exchange factor for the GTPase Gtr1p physical 1 1 1 Affinity Capture-RNA
SYO1 YDL063C Transport adaptor or symportin physical 1 1 1 Affinity Capture-RNA
USO1 YDL058W Essential protein involved in vesicle-mediated ER to Golgi transport physical 1 1 1 Affinity Capture-RNA
MBP1 YDL056W Transcription factor physical 1 1 1 Affinity Capture-RNA
MPS1 YDL028C Dual-specificity kinase physical 1 1 1 Affinity Capture-RNA
RTK1 YDL025C Putative protein kinase, potentially phosphorylated by Cdc28p physical 1 1 1 Affinity Capture-RNA
RPN4 YDL020C Transcription factor that stimulates expression of proteasome genes physical 1 1 1 Affinity Capture-RNA
SLX5 YDL013W Subunit of the Slx5-Slx8 SUMO-targeted Ub ligase (STUbL) complex physical 1 1 1 Affinity Capture-RNA
NTH1 YDR001C Neutral trehalase, degrades trehalose physical 1 1 1 Affinity Capture-RNA
RAD57 YDR004W Protein that stimulates strand exchange physical 1 1 1 Affinity Capture-RNA
MAF1 YDR005C Highly conserved negative regulator of RNA polymerase III physical 1 1 1 Affinity Capture-RNA
SOK1 YDR006C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SNQ2 YDR011W Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
RAD61 YDR014W Subunit of a complex that inhibits sister chromatid cohesion physical 1 1 1 Affinity Capture-RNA
KCS1 YDR017C Inositol hexakisphosphate and inositol heptakisphosphate kinase physical 1 1 1 Affinity Capture-RNA
KCS1 YDR017C Inositol hexakisphosphate and inositol heptakisphosphate kinase genetic 1 1 1 Negative Genetic
VPS54 YDR027C Component of the GARP (Golgi-associated retrograde protein) complex physical 1 1 1 Affinity Capture-RNA
REG1 YDR028C Regulatory subunit of type 1 protein phosphatase Glc7p physical 1 1 1 Affinity Capture-RNA
RAD28 YDR030C Protein involved in DNA repair physical 1 1 1 Affinity Capture-RNA
YOS9 YDR057W ER quality-control lectin physical 1 1 1 Affinity Capture-RNA
MAK21 YDR060W Constituent of 66S pre-ribosomal particles physical 1 1 1 Affinity Capture-RNA
YDR061W YDR061W Protein with similarity to ABC transporter family members physical 1 1 1 Affinity Capture-RNA
LCB2 YDR062W Component of serine palmitoyltransferase physical 1 1 1 Affinity Capture-RNA
RRG1 YDR065W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
TPS2 YDR074W Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex physical 1 1 1 Affinity Capture-RNA
TPS2 YDR074W Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex genetic 1 1 1 Negative Genetic
PPH3 YDR075W Catalytic subunit of protein phosphatase PP4 complex physical 1 1 1 Affinity Capture-RNA
VPS41 YDR080W Subunit of the HOPS endocytic tethering complex physical 1 1 1 Affinity Capture-RNA
PDC2 YDR081C Transcription factor for thiamine-regulated genes physical 1 1 1 Affinity Capture-RNA
STN1 YDR082W Telomere end-binding and capping protein physical 1 1 1 Affinity Capture-RNA
VTC5 YDR089W Novel subunit of the vacuolar transporter chaperone complex physical 1 1 1 Affinity Capture-RNA
MSH6 YDR097C Protein required for mismatch repair in mitosis and meiosis physical 1 1 1 Affinity Capture-RNA
STE5 YDR103W Pheromone-responsive MAPK scaffold protein physical 1 1 1 Affinity Capture-RNA
SPO71 YDR104C Meiosis-specific protein required for prospore membrane morphogenesis physical 1 1 1 Affinity Capture-RNA
TRS85 YDR108W Component of transport protein particle (TRAPP) complex III physical 1 1 1 Affinity Capture-RNA
YDR109C YDR109C D-ribulokinase physical 1 1 1 Affinity Capture-RNA
TMA64 YDR117C Protein of unknown function that associates with ribosomes physical 1 1 1 Affinity Capture-RNA
KIN1 YDR122W S/T protein kinase physical 1 1 1 Affinity Capture-RNA
MTC5 YDR128W Subunit of SEACAT, a subcomplex of the SEA complex physical 1 1 1 Affinity Capture-RNA
YDR131C YDR131C F-box protein subunit of SCF ubiquitin ligase complex physical 1 1 1 Affinity Capture-RNA
MRX16 YDR132C Protein that associates with the large mitoribosomal subunit physical 1 1 1 Affinity Capture-RNA
YCF1 YDR135C Vacuolar glutathione S-conjugate transporter physical 1 1 1 Affinity Capture-RNA
RGP1 YDR137W Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) physical 1 1 1 Affinity Capture-RNA
RGP1 YDR137W Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) genetic 1 1 1 Negative Genetic
MKC7 YDR144C GPI-anchored aspartyl protease physical 1 1 1 Affinity Capture-RNA
SSY1 YDR160W Component of the SPS plasma membrane amino acid sensor system physical 1 1 1 Affinity Capture-RNA
SEC1 YDR164C Sm-like protein involved in docking and fusion of exocytic vesicles physical 1 1 1 Affinity Capture-RNA
SEC5 YDR166C Essential 107kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
SEC7 YDR170C Guanine nucleotide exchange factor (GEF) for ADP ribosylation factors physical 1 1 1 Affinity Capture-RNA
SCC2 YDR180W Subunit of cohesin loading factor (Scc2p-Scc4p) physical 1 1 1 Affinity Capture-RNA
SCC2 YDR180W Subunit of cohesin loading factor (Scc2p-Scc4p) genetic 1 1 1 Dosage Rescue
SND1 YDR186C Protein involved in SRP-independent targeting of substrates to the ER physical 1 1 1 Affinity Capture-RNA
VPS64 YDR200C Protein required for cytoplasm to vacuole targeting of proteins physical 1 1 1 Affinity Capture-RNA
MSC2 YDR205W Endoplasmic reticulum zinc transporter physical 1 1 1 Affinity Capture-RNA
MSS4 YDR208W Phosphatidylinositol-4-phosphate 5-kinase physical 1 1 1 Affinity Capture-RNA
RAD9 YDR217C DNA damage-dependent checkpoint protein physical 1 1 1 Affinity Capture-RNA
YDR222W YDR222W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
PRP42 YDR235W U1 snRNP protein involved in splicing physical 1 1 1 Affinity Capture-RNA
SEC26 YDR238C Essential beta-coat protein of the COPI coatomer physical 1 1 1 Affinity Capture-RNA
YDR249C YDR249C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PAM1 YDR251W Essential protein of unknown function physical 1 1 1 Affinity Capture-RNA
RMD5 YDR255C Component of GID Complex that confers ubiquitin ligase (U3) activity physical 1 1 1 Affinity Capture-RNA
MTH1 YDR277C Negative regulator of the glucose-sensing signal transduction pathway physical 1 1 1 Affinity Capture-RNA
SRP101 YDR292C Signal recognition particle (SRP) receptor alpha subunit physical 1 1 1 Affinity Capture-RNA
TFB1 YDR311W Subunit of TFIIH and nucleotide excision repair factor 3 complexes physical 1 1 1 Affinity Capture-RNA
TFB1 YDR311W Subunit of TFIIH and nucleotide excision repair factor 3 complexes genetic 1 1 1 Positive Genetic
PEP7 YDR323C Adaptor protein involved in vesicle-mediated vacuolar protein sorting physical 1 1 1 Affinity Capture-RNA
YCG1 YDR325W Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
RQC1 YDR333C Component of the ribosome quality control complex (RQC) physical 1 1 1 Affinity Capture-RNA
MSN5 YDR335W Karyopherin physical 1 1 1 Affinity Capture-RNA
YDR338C YDR338C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YPS7 YDR349C Putative GPI-anchored aspartic protease physical 1 1 1 Affinity Capture-RNA
XRS2 YDR369C FHA domain-containing component of the Mre11 complex physical 1 1 1 Affinity Capture-RNA
RGA2 YDR379W GTPase-activating protein for polarity-establishment protein Cdc42p physical 1 1 1 Affinity Capture-RNA
UBA2 YDR390C Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Aos1p physical 1 1 1 Affinity Capture-RNA
SXM1 YDR395W Nuclear transport factor (karyopherin) physical 1 1 1 Affinity Capture-RNA
TRS120 YDR407C Component of transport protein particle (TRAPP) complex II physical 1 1 1 Affinity Capture-RNA
SYF1 YDR416W Member of the NineTeen Complex (NTC) physical 1 1 1 Affinity Capture-RNA
RAD30 YDR419W DNA polymerase eta physical 1 1 1 Affinity Capture-RNA
SIP1 YDR422C One of three alternate beta-subunits of the Snf1p kinase complex physical 1 1 1 Affinity Capture-RNA
THI74 YDR438W Mitochondrial transporter repressible by thiamine physical 1 1 1 Affinity Capture-RNA
NHX1 YDR456W Na+/H+ and K+/H+ exchanger physical 1 1 1 Affinity Capture-RNA
JIP4 YDR475C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SNF1 YDR477W AMP-activated S/T protein kinase physical 1 1 1 Affinity Capture-RNA
PEX29 YDR479C ER-resident protein involved in peroxisomal biogenesis physical 1 1 1 Affinity Capture-RNA
PKH1 YDR490C Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
URC2 YDR520C Putative Zn(II)2Cys6 motif containing transcription factor physical 1 1 1 Affinity Capture-RNA
SPS1 YDR523C STE20-family GCKIII protein kinase physical 1 1 1 Affinity Capture-RNA
YDR541C YDR541C Aldehyde reductase physical 1 1 1 Affinity Capture-RNA
YEL075C YEL075C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SIT1 YEL065W Ferrioxamine B transporter physical 1 1 1 Affinity Capture-RNA
NPR2 YEL062W Subunit of the Iml1p/SEACIT complex physical 1 1 1 Affinity Capture-RNA
POL5 YEL055C Protein involved in 60S assembly and pre-40S AFs recycling physical 1 1 1 Affinity Capture-RNA
MAK10 YEL053C Non-catalytic subunit of the NatC N-terminal acetyltransferase physical 1 1 1 Affinity Capture-RNA
MCM3 YEL032W Protein involved in DNA replication physical 1 1 1 Affinity Capture-RNA
SPF1 YEL031W P-type ATPase, ion transporter of the ER membrane physical 1 1 1 Affinity Capture-RNA
YEL025C YEL025C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PXP1 YEL020C Peroxisomal matrix protein physical 1 1 1 Affinity Capture-RNA
MMS21 YEL019C Highly conserved SUMO E3 ligase subunit of SMC5-SMC6 complex physical 1 1 1 Affinity Capture-RNA
NPP2 YEL016C Nucleotide pyrophosphatase/phosphodiesterase physical 1 1 1 Affinity Capture-RNA
VAC8 YEL013W Vacuole-specific Myo2p receptor physical 1 1 1 Affinity Capture-RNA
MNN1 YER001W Alpha-1,3-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
YND1 YER005W Apyrase with wide substrate specificity physical 1 1 1 Affinity Capture-RNA
PAC2 YER007W Microtubule effector required for tubulin heterodimer formation physical 1 1 1 Affinity Capture-RNA
PRP22 YER013W DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase physical 1 1 1 Affinity Capture-RNA
RPN3 YER021W Essential non-ATPase regulatory subunit of the 26S proteasome lid physical 1 1 1 Affinity Capture-RNA
YAT2 YER024W Carnitine acetyltransferase physical 1 1 1 Affinity Capture-RNA
YEN1 YER041W Holliday junction resolvase physical 1 1 1 Affinity Capture-RNA
JHD1 YER051W JmjC domain family histone demethylase specific for H3-K36 physical 1 1 1 Affinity Capture-RNA
RRT13 YER066W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RNR1 YER070W Major isoform of large subunit of ribonucleotide-diphosphate reductase physical 1 1 1 Affinity Capture-RNA
PTP3 YER075C Phosphotyrosine-specific protein phosphatase physical 1 1 1 Affinity Capture-RNA
MRX1 YER077C Protein that associates with mitochondrial ribosome physical 1 1 1 Affinity Capture-RNA
UBP9 YER098W Ubiquitin-specific protease that cleaves ubiquitin-protein fusions physical 1 1 1 Affinity Capture-RNA
NUP157 YER105C Subunit of the inner ring of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
KAP123 YER110C Karyopherin beta physical 1 1 1 Affinity Capture-RNA
TMN3 YER113C Protein with a role in cellular adhesion and filamentous growth physical 1 1 1 Affinity Capture-RNA
YCK3 YER123W Palmitoylated vacuolar membrane-localized casein kinase I isoform physical 1 1 1 Affinity Capture-RNA
RSP5 YER125W NEDD4 family E3 ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
UBP5 YER144C Putative ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
UBP3 YER151C Ubiquitin-specific protease that cleaves Ub-protein fusions physical 1 1 1 Affinity Capture-RNA
YER152C YER152C Protein with 2-aminoadipate transaminase activity physical 1 1 1 Affinity Capture-RNA
RAD3 YER171W 5' to 3' DNA helicase physical 1 1 1 Affinity Capture-RNA
RAD24 YER173W Checkpoint protein physical 1 1 1 Affinity Capture-RNA
TOG1 YER184C Transcriptional activator of oleate genes physical 1 1 1 Affinity Capture-RNA
PUG1 YER185W Plasma membrane protein involved in protoprophyrin and heme transport physical 1 1 1 Affinity Capture-RNA
YER189W YER189W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RGD2 YFL047W GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p physical 1 1 1 Affinity Capture-RNA
LAM5 YFL042C Putative sterol transfer protein physical 1 1 1 Affinity Capture-RNA
STE2 YFL026W Receptor for alpha-factor pheromone physical 1 1 1 Affinity Capture-RNA
SMC1 YFL008W Subunit of the multiprotein cohesin complex physical 1 1 1 Affinity Capture-RNA
MSH4 YFL003C Protein involved in meiotic recombination physical 1 1 1 Affinity Capture-RNA
SAD1 YFR005C Conserved zinc-finger domain protein involved in pre-mRNA splicing physical 1 1 1 Affinity Capture-RNA
ROG3 YFR022W Alpha-arrestin involved in ubiquitin-dependent endocytosis physical 1 1 1 Affinity Capture-RNA
PTR3 YFR029W Component of the SPS plasma membrane amino acid sensor system physical 1 1 1 Affinity Capture-RNA
MET10 YFR030W Subunit alpha of assimilatory sulfite reductase physical 1 1 1 Affinity Capture-RNA
SMC2 YFR031C Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
PHO4 YFR034C Basic helix-loop-helix (bHLH) transcription factor of the myc-family physical 1 1 1 Affinity Capture-RNA
OSW7 YFR039C Protein involved in outer spore wall assembly physical 1 1 1 Affinity Capture-RNA
MRX20 YFR045W Putative mitochondrial transport protein physical 1 1 1 Affinity Capture-RNA
RMD8 YFR048W Cytosolic protein required for sporulation physical 1 1 1 Affinity Capture-RNA
YGL262W YGL262W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YPS5 YGL259W Protein with similarity to GPI-anchored aspartic proteases physical 1 1 1 Affinity Capture-RNA
YGL258W-A YGL258W-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
VEL1 YGL258W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
MNT2 YGL257C Mannosyltransferase physical 1 1 1 Affinity Capture-RNA
ZRT1 YGL255W High-affinity zinc transporter of the plasma membrane physical 1 1 1 Affinity Capture-RNA
ZIP2 YGL249W Meiosis-specific protein physical 1 1 1 Affinity Capture-RNA
KAP114 YGL241W Karyopherin, responsible for nuclear import of specific proteins physical 1 1 1 Affinity Capture-RNA
SEC15 YGL233W Essential 113 kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
SAP4 YGL229C Protein required for function of the Sit4p protein phosphatase physical 1 1 1 Affinity Capture-RNA
VID30 YGL227W Central component of GID Complex, involved in FBPase degradation physical 1 1 1 Affinity Capture-RNA
KIP3 YGL216W Kinesin-related antiparallel sliding motor protein physical 1 1 1 Affinity Capture-RNA
MIG2 YGL209W Zinc finger transcriptional repressor physical 1 1 1 Affinity Capture-RNA
SPT16 YGL207W Subunit of the heterodimeric FACT complex (Spt16p-Pob3p) physical 1 1 1 Affinity Capture-RNA
KEX1 YGL203C Cell death protease essential for hypochlorite-induced apoptosis physical 1 1 1 Affinity Capture-RNA
MCM6 YGL201C Protein involved in DNA replication physical 1 1 1 Affinity Capture-RNA
YGL193C YGL193C Haploid-specific gene repressed by a1-alpha2 physical 1 1 1 Affinity Capture-RNA
TOS3 YGL179C Protein kinase physical 1 1 1 Affinity Capture-RNA
YGL176C YGL176C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
XRN1 YGL173C Evolutionarily-conserved 5'-3' exonuclease physical 1 1 1 Affinity Capture-RNA
XRN1 YGL173C Evolutionarily-conserved 5'-3' exonuclease genetic 1 1 1 Synthetic Growth Defect
NUP49 YGL172W FG-nucleoporin component of central core of the nuclear pore complex physical 1 1 1 Affinity Capture-RNA
PMR1 YGL167C High affinity Ca2+/Mn2+ P-type ATPase physical 1 1 1 Affinity Capture-RNA
RAD54 YGL163C DNA-dependent ATPase that stimulates strand exchange physical 1 1 1 Affinity Capture-RNA
NUT1 YGL151W Component of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
TIP20 YGL145W Peripheral membrane protein required for COPI vesicle fusion to the ER physical 1 1 1 Affinity Capture-RNA
PCL10 YGL134W Pho85p cyclin physical 1 1 1 Affinity Capture-RNA
MON1 YGL124C Subunit of a heterodimeric guanine nucleotide exchange factor (GEF) physical 1 1 1 Affinity Capture-RNA
YGL114W YGL114W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RMD9 YGL107C Mitochondrial protein that controls mitochondrial gene expression physical 1 1 1 Affinity Capture-RNA
TOS8 YGL096W Homeodomain-containing protein and putative transcription factor physical 1 1 1 Affinity Capture-RNA
PAN2 YGL094C Catalytic subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex physical 1 1 1 Affinity Capture-RNA
NUP145 YGL092W Essential protein with distinct roles in two nuclear pore subcomplexes physical 1 1 1 Affinity Capture-RNA
LIF1 YGL090W Component of the DNA ligase IV complex physical 1 1 1 Affinity Capture-RNA
SCY1 YGL083W Putative kinase physical 1 1 1 Affinity Capture-RNA
PYC1 YGL062W Pyruvate carboxylase isoform physical 1 1 1 Affinity Capture-RNA
YBP2 YGL060W Central kinetochore associated protein physical 1 1 1 Affinity Capture-RNA
PKP2 YGL059W Mitochondrial protein kinase physical 1 1 1 Affinity Capture-RNA
RIM8 YGL045W Protein involved in proteolytic activation of Rim101p physical 1 1 1 Affinity Capture-RNA
YGL036W YGL036W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
KAP122 YGL016W Karyopherin beta physical 1 1 1 Affinity Capture-RNA
PUF4 YGL014W Member of the PUF protein family physical 1 1 1 Affinity Capture-RNA
PDR1 YGL013C Transcription factor that regulates the pleiotropic drug response physical 1 1 1 Affinity Capture-RNA
PMC1 YGL006W Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions physical 1 1 1 Affinity Capture-RNA
TAM41 YGR046W Mitochondrial phosphatidate cytidylyltransferase (CDP-DAG synthase) physical 1 1 1 Affinity Capture-RNA
TFC4 YGR047C Subunit of RNA polymerase III transcription initiation factor complex physical 1 1 1 Affinity Capture-RNA
SPR3 YGR059W Sporulation-specific homolog of the CDC3/10/11/12 family of genes physical 1 1 1 Affinity Capture-RNA
YGR067C YGR067C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
ROM1 YGR070W Guanine nucleotide exchange factor (GEF) for Rho1p physical 1 1 1 Affinity Capture-RNA
PEX8 YGR077C Intraperoxisomal organizer of the peroxisomal import machinery physical 1 1 1 Affinity Capture-RNA
NNF2 YGR089W Protein that exhibits physical and genetic interactions with Rpb8p physical 1 1 1 Affinity Capture-RNA
UTP22 YGR090W Component of the small-subunit processome physical 1 1 1 Affinity Capture-RNA
TEL2 YGR099W Subunit of the ASTRA complex, involved in chromatin remodeling physical 1 1 1 Affinity Capture-RNA
MDR1 YGR100W Cytoplasmic GTPase-activating protein physical 1 1 1 Affinity Capture-RNA
SPT6 YGR116W Nucleosome remodeling protein physical 1 1 1 Affinity Capture-RNA
YGR117C YGR117C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YGR122W YGR122W Protein that may be involved in pH regulation physical 1 1 1 Affinity Capture-RNA
VSB1 YGR125W Vacuolar membrane protein required for uptake and storage of arginine physical 1 1 1 Affinity Capture-RNA
YGR126W YGR126W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
TPO2 YGR138C Polyamine transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
VPS62 YGR141W Vacuolar protein sorting (VPS) protein physical 1 1 1 Affinity Capture-RNA
SKN1 YGR143W Protein involved in sphingolipid biosynthesis physical 1 1 1 Affinity Capture-RNA
TRS65 YGR166W Component of transport protein particle (TRAPP) complex II physical 1 1 1 Affinity Capture-RNA
PSD2 YGR170W Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes physical 1 1 1 Affinity Capture-RNA
MSM1 YGR171C Mitochondrial methionyl-tRNA synthetase (MetRS) physical 1 1 1 Affinity Capture-RNA
PBP1 YGR178C Component of glucose deprivation induced stress granules physical 1 1 1 Affinity Capture-RNA
UBR1 YGR184C E3 ubiquitin ligase (N-recognin) physical 1 1 1 Affinity Capture-RNA
XKS1 YGR194C Xylulokinase physical 1 1 1 Affinity Capture-RNA
SNG1 YGR197C Protein involved in resistance to nitrosoguanidine and 6-azauracil physical 1 1 1 Affinity Capture-RNA
YPP1 YGR198W Cargo-transport protein involved in endocytosis physical 1 1 1 Affinity Capture-RNA
PMT6 YGR199W Protein O-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
SLI1 YGR212W N-acetyltransferase physical 1 1 1 Affinity Capture-RNA
TOS2 YGR221C Protein involved in localization of Cdc24p to the site of bud growth physical 1 1 1 Affinity Capture-RNA
PHO81 YGR233C Cyclin-dependent kinase (CDK) inhibitor physical 1 1 1 Affinity Capture-RNA
YGR237C YGR237C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RIE1 YGR250C RNA binding protein and negative regulator of START physical 1 1 1 Affinity Capture-RNA
RAD2 YGR258C Single-stranded DNA endonuclease physical 1 1 1 Affinity Capture-RNA
YOR1 YGR281W Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
MAL13 YGR288W MAL-activator protein physical 1 1 1 Affinity Capture-RNA
MAL11 YGR289C High-affinity maltose transporter (alpha-glucoside transporter) physical 1 1 1 Affinity Capture-RNA
MAL12 YGR292W Maltase (alpha-D-glucosidase) physical 1 1 1 Affinity Capture-RNA
PAU13 YHL046C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
MUP3 YHL036W Low affinity methionine permease physical 1 1 1 Affinity Capture-RNA
RIM101 YHL027W Cys2His2 zinc-finger transcriptional repressor physical 1 1 1 Affinity Capture-RNA
NPR3 YHL023C Subunit of the Iml1p/SEACIT complex physical 1 1 1 Affinity Capture-RNA
YHL017W YHL017W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
STE20 YHL007C Cdc42p-activated signal transducing kinase physical 1 1 1 Affinity Capture-RNA
NEM1 YHR004C Probable catalytic subunit of Nem1p-Spo7p phosphatase holoenzyme physical 1 1 1 Affinity Capture-RNA
STP2 YHR006W Transcription factor physical 1 1 1 Affinity Capture-RNA
TDA3 YHR009C Putative oxidoreductase involved in late endosome to Golgi transport physical 1 1 1 Affinity Capture-RNA
YHR022C YHR022C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RPN1 YHR027C Non-ATPase base subunit of the 19S RP of the 26S proteasome physical 1 1 1 Affinity Capture-RNA
YHR033W YHR033W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
NEL1 YHR035W Activator of Sar1p GTPase activity physical 1 1 1 Affinity Capture-RNA
NCP1 YHR042W NADP-cytochrome P450 reductase physical 1 1 1 Affinity Capture-RNA
SMF2 YHR050W Divalent metal ion transporter involved in manganese homeostasis physical 1 1 1 Affinity Capture-RNA
YHR054C YHR054C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RSC30 YHR056C Component of the RSC chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
OSH3 YHR073W Member of an oxysterol-binding protein family physical 1 1 1 Affinity Capture-RNA
NMD2 YHR077C Protein involved in the nonsense-mediated mRNA decay (NMD) pathway physical 1 1 1 Affinity Capture-RNA
YHR078W YHR078W High osmolarity-regulated gene of unknown function physical 1 1 1 Affinity Capture-RNA
KSP1 YHR082C Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
NAM8 YHR086W RNA binding protein, component of the U1 snRNP protein physical 1 1 1 Affinity Capture-RNA
MSR1 YHR091C Mitochondrial arginyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
SFB3 YHR098C Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat physical 1 1 1 Affinity Capture-RNA
SBE22 YHR103W Protein involved in bud growth physical 1 1 1 Affinity Capture-RNA
SET1 YHR119W Histone methyltransferase, subunit of the COMPASS (Set1C) complex physical 1 1 1 Affinity Capture-RNA
SET1 YHR119W Histone methyltransferase, subunit of the COMPASS (Set1C) complex genetic 1 1 1 Synthetic Rescue
MSH1 YHR120W DNA-binding protein of the mitochondria physical 1 1 1 Affinity Capture-RNA
YHR131C YHR131C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SKG6 YHR149C Integral membrane protein physical 1 1 1 Affinity Capture-RNA
PEX28 YHR150W Peroxisomal integral membrane peroxin physical 1 1 1 Affinity Capture-RNA
MTC6 YHR151C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
LAM1 YHR155W Putative sterol transfer protein physical 1 1 1 Affinity Capture-RNA
KEL1 YHR158C Protein required for proper cell fusion and cell morphology physical 1 1 1 Affinity Capture-RNA
TDA11 YHR159W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YAP1801 YHR161C Protein of the AP180 family, involved in clathrin cage assembly physical 1 1 1 Affinity Capture-RNA
MTG2 YHR168W Putative GTPase physical 1 1 1 Affinity Capture-RNA
SPC97 YHR172W Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex physical 1 1 1 Affinity Capture-RNA
ROF1 YHR177W Putative transcription factor containing a WOPR domain physical 1 1 1 Affinity Capture-RNA
STB5 YHR178W Transcription factor physical 1 1 1 Affinity Capture-RNA
RGD3 YHR182W GTPase activating protein (GAP) for Rho3p, involved in cell polarity g physical 1 1 1 Affinity Capture-RNA
PTH1 YHR189W One of two mitochondrially-localized peptidyl-tRNA hydrolases physical 1 1 1 Affinity Capture-RNA
MDM31 YHR194W Mitochondrial protein that may have a role in phospholipid metabolism physical 1 1 1 Affinity Capture-RNA
SMN1 YHR202W Putative AMP hydrolase physical 1 1 1 Affinity Capture-RNA
MNL1 YHR204W Alpha-1,2-specific exomannosidase of the endoplasmic reticulum physical 1 1 1 Affinity Capture-RNA
YHR210C YHR210C Putative aldose 1-epimerase superfamily protein physical 1 1 1 Affinity Capture-RNA
SOA1 YIL166C Sulfonate and inorganic sulfur transporter physical 1 1 1 Affinity Capture-RNA
SSL2 YIL143C Component of RNA polymerase transcription factor TFIIH holoenzyme physical 1 1 1 Affinity Capture-RNA
TMA108 YIL137C Ribosome-associated, nascent chain binding factor physical 1 1 1 Affinity Capture-RNA
MET18 YIL128W Component of cytosolic iron-sulfur protein assembly (CIA) machinery physical 1 1 1 Affinity Capture-RNA
MET18 YIL128W Component of cytosolic iron-sulfur protein assembly (CIA) machinery genetic 1 1 1 Negative Genetic
STH1 YIL126W ATPase component of the RSC chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
KGD1 YIL125W Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex physical 1 1 1 Affinity Capture-RNA
SIM1 YIL123W Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p) physical 1 1 1 Affinity Capture-RNA
NUP159 YIL115C FG-nucleoporin component of central core of the nuclear pore complex physical 1 1 1 Affinity Capture-RNA
SEC24 YIL109C Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat physical 1 1 1 Affinity Capture-RNA
YIL108W YIL108W Putative metalloendopeptidase physical 1 1 1 Affinity Capture-RNA
PFK26 YIL107C 6-phosphofructo-2-kinase physical 1 1 1 Affinity Capture-RNA
SLM1 YIL105C Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p physical 1 1 1 Affinity Capture-RNA
YIL092W YIL092W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
KTR7 YIL085C Putative mannosyltransferase involved in protein glycosylation physical 1 1 1 Affinity Capture-RNA
RPN2 YIL075C Subunit of the 26S proteasome physical 1 1 1 Affinity Capture-RNA
PCI8 YIL071C Possible shared subunit of Cop9 signalosome (CSN) and eIF3 physical 1 1 1 Affinity Capture-RNA
SEC6 YIL068C Essential 88kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
YIL067C YIL067C Uncharacterized protein of unknown function physical 1 1 1 Affinity Capture-RNA
RNR3 YIL066C Minor isoform of large subunit of ribonucleotide-diphosphate reductase physical 1 1 1 Affinity Capture-RNA
YIL055C YIL055C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
NEO1 YIL048W Phospholipid translocase (flippase) physical 1 1 1 Affinity Capture-RNA
MET30 YIL046W F-box protein containing five copies of the WD40 motif physical 1 1 1 Affinity Capture-RNA
PIG2 YIL045W Putative type-1 protein phosphatase targeting subunit physical 1 1 1 Affinity Capture-RNA
NOT3 YIL038C Component of the CCR4-NOT core complex, involved in mRNA decapping physical 1 1 1 Affinity Capture-RNA
PRM2 YIL037C Pheromone-regulated protein physical 1 1 1 Affinity Capture-RNA
SSM4 YIL030C Membrane-embedded ubiquitin-protein ligase and retrotranslocase physical 1 1 1 Affinity Capture-RNA
VID28 YIL017C GID Complex subunit, serves as adaptor for regulatory subunit Vid24p physical 1 1 1 Affinity Capture-RNA
MNT3 YIL014W Alpha-1,3-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
PDR11 YIL013C ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
TIR3 YIL011W Cell wall mannoprotein physical 1 1 1 Affinity Capture-RNA
YIL001W YIL001W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MPH1 YIR002C 3'-5' DNA helicase involved in error-free bypass of DNA lesions physical 1 1 1 Affinity Capture-RNA
PAN1 YIR006C Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p physical 1 1 1 Affinity Capture-RNA
RPR2 YIR015W Subunit of nuclear RNase P physical 1 1 1 Affinity Capture-RNA
MGA2 YIR033W ER membrane protein involved in regulation of OLE1 transcription physical 1 1 1 Affinity Capture-RNA
YPS6 YIR039C Putative GPI-anchored aspartic protease physical 1 1 1 Affinity Capture-RNA
YJL213W YJL213W Protein of unknown function that may interact with ribosomes physical 1 1 1 Affinity Capture-RNA
LAA1 YJL207C AP-1 accessory protein physical 1 1 1 Affinity Capture-RNA
YJL206C YJL206C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PHO90 YJL198W Low-affinity phosphate transporter physical 1 1 1 Affinity Capture-RNA
SWE1 YJL187C Protein kinase that regulates the G2/M transition physical 1 1 1 Affinity Capture-RNA
RBH1 YJL181W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SWI3 YJL176C Subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
TPK1 YJL164C cAMP-dependent protein kinase catalytic subunit physical 1 1 1 Affinity Capture-RNA
SSY5 YJL156C Serine protease of SPS plasma membrane amino acid sensor system physical 1 1 1 Affinity Capture-RNA
VPS35 YJL154C Endosomal subunit of membrane-associated retromer complex physical 1 1 1 Affinity Capture-RNA
YAK1 YJL141C Serine-threonine protein kinase physical 1 1 1 Affinity Capture-RNA
YUR1 YJL139C Mannosyltransferase involved in protein N-glycosylation physical 1 1 1 Affinity Capture-RNA
YJL132W YJL132W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
URA2 YJL130C Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase physical 1 1 1 Affinity Capture-RNA
PBS2 YJL128C MAP kinase kinase of the HOG signaling pathway physical 1 1 1 Affinity Capture-RNA
MDV1 YJL112W Peripheral protein of cytosolic face of mitochondrial outer membrane physical 1 1 1 Affinity Capture-RNA
PRM10 YJL108C Pheromone-regulated protein physical 1 1 1 Affinity Capture-RNA
YJL107C YJL107C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SET4 YJL105W Chromatin-associated protein involved in control of stress response physical 1 1 1 Affinity Capture-RNA
MEF2 YJL102W Mitochondrial elongation factor involved in translational elongation physical 1 1 1 Affinity Capture-RNA
SAP185 YJL098W Protein that forms a complex with the Sit4p protein phosphatase physical 1 1 1 Affinity Capture-RNA
KHA1 YJL094C Putative K+/H+ antiporter physical 1 1 1 Affinity Capture-RNA
TOK1 YJL093C Outward-rectifier potassium channel of the plasma membrane physical 1 1 1 Affinity Capture-RNA
TRL1 YJL087C tRNA ligase physical 1 1 1 Affinity Capture-RNA
SCP160 YJL080C Essential RNA-binding G protein effector of mating response pathway physical 1 1 1 Affinity Capture-RNA
PRY3 YJL078C GPI-anchored cell wall protein involved in export of sterols physical 1 1 1 Affinity Capture-RNA
NET1 YJL076W Core subunit of the RENT complex physical 1 1 1 Affinity Capture-RNA
SMC3 YJL074C Subunit of the multiprotein cohesin complex physical 1 1 1 Affinity Capture-RNA
YJL070C YJL070C Putative metallo-dependent hydrolase superfamily protein physical 1 1 1 Affinity Capture-RNA
NUP82 YJL061W Linker nucleoporin component of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
ZAP1 YJL056C Zinc-regulated transcription factor physical 1 1 1 Affinity Capture-RNA
RTT101 YJL047C Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex physical 1 1 1 Affinity Capture-RNA
MHP1 YJL042W Microtubule-associated protein involved in microtubule organization physical 1 1 1 Affinity Capture-RNA
NSP1 YJL041W FG-nucleoporin component of central core of the nuclear pore complex physical 1 1 1 Affinity Capture-RNA
NUP192 YJL039C Essential subunit of inner ring of nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
VPS53 YJL029C Component of the GARP (Golgi-associated retrograde protein) complex physical 1 1 1 Affinity Capture-RNA
MPS3 YJL019W Nuclear envelope protein physical 1 1 1 Affinity Capture-RNA
TPH3 YJL016W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
OST1 YJL002C Alpha subunit of the oligosaccharyltransferase complex of the ER lumen physical 1 1 1 Affinity Capture-RNA
MRX12 YJR003C Protein that associates with mitochondrial ribosome physical 1 1 1 Affinity Capture-RNA
MET3 YJR010W ATP sulfurylase physical 1 1 1 Affinity Capture-RNA
RBH2 YJR030C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MLO127 YJR039W Mitochondrial protein of unknown function physical 1 1 1 Affinity Capture-RNA
URB2 YJR041C Protein required for normal metabolism of the rRNA primary transcript physical 1 1 1 Affinity Capture-RNA
NUP85 YJR042W Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
TAH11 YJR046W DNA replication licensing factor physical 1 1 1 Affinity Capture-RNA
RAD7 YJR052W Nucleotide excision repair (NER) protein physical 1 1 1 Affinity Capture-RNA
KCH1 YJR054W Potassium transporter that mediates K+ influx physical 1 1 1 Affinity Capture-RNA
MNN14 YJR061W Protein required for N-glycan mannosylphosphorylation physical 1 1 1 Affinity Capture-RNA
YMR1 YJR110W Phosphatidylinositol 3-phosphate (PI3P) phosphatase physical 1 1 1 Affinity Capture-RNA
STE24 YJR117W Highly conserved zinc metalloprotease physical 1 1 1 Affinity Capture-RNA
JHD2 YJR119C JmjC domain family histone demethylase physical 1 1 1 Affinity Capture-RNA
YJR124C YJR124C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
VPS70 YJR126C Protein of unknown function involved in vacuolar protein sorting physical 1 1 1 Affinity Capture-RNA
RSF2 YJR127C Zinc-finger protein physical 1 1 1 Affinity Capture-RNA
STR2 YJR130C Cystathionine gamma-synthase, converts cysteine into cystathionine physical 1 1 1 Affinity Capture-RNA
NMD5 YJR132W Karyopherin physical 1 1 1 Affinity Capture-RNA
MET5 YJR137C Sulfite reductase beta subunit physical 1 1 1 Affinity Capture-RNA
YJR149W YJR149W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YJR154W YJR154W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MPH3 YJR160C Alpha-glucoside permease physical 1 1 1 Affinity Capture-RNA
YKL222C YKL222C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
JEN1 YKL217W Monocarboxylate/proton symporter of the plasma membrane physical 1 1 1 Affinity Capture-RNA
OXP1 YKL215C 5-oxoprolinase physical 1 1 1 Affinity Capture-RNA
STE6 YKL209C Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
LOS1 YKL205W Nuclear pore protein physical 1 1 1 Affinity Capture-RNA
MNN4 YKL201C Putative positive regulator of mannosylphosphate transferase Mnn6p physical 1 1 1 Affinity Capture-RNA
PXA2 YKL188C Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa1p physical 1 1 1 Affinity Capture-RNA
SPE1 YKL184W Ornithine decarboxylase physical 1 1 1 Affinity Capture-RNA
SNU114 YKL173W GTPase component of U5 snRNP involved in mRNA splicing via spliceosome physical 1 1 1 Affinity Capture-RNA
KKQ8 YKL168C Putative serine/threonine protein kinase with unknown cellular role physical 1 1 1 Affinity Capture-RNA
MCD4 YKL165C Protein involved in GPI anchor synthesis physical 1 1 1 Affinity Capture-RNA
KDX1 YKL161C Protein kinase physical 1 1 1 Affinity Capture-RNA
TGL1 YKL140W Steryl ester hydrolase physical 1 1 1 Affinity Capture-RNA
OCT1 YKL134C Mitochondrial intermediate peptidase physical 1 1 1 Affinity Capture-RNA
RMA1 YKL132C Putative dihydrofolate synthetase physical 1 1 1 Affinity Capture-RNA
MYO3 YKL129C One of two type I myosins physical 1 1 1 Affinity Capture-RNA
YPK1 YKL126W S/T protein kinase physical 1 1 1 Affinity Capture-RNA
PRR1 YKL116C Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
SEG2 YKL105C Eisosome component physical 1 1 1 Affinity Capture-RNA
YPF1 YKL100C Intramembrane aspartyl protease of the perinuclear ER membrane physical 1 1 1 Affinity Capture-RNA
LHS1 YKL073W Molecular chaperone of the endoplasmic reticulum lumen physical 1 1 1 Affinity Capture-RNA
STB6 YKL072W Protein that binds Sin3p in a two-hybrid assay physical 1 1 1 Affinity Capture-RNA
OSI1 YKL071W NADH-dependent aldehyde reductase physical 1 1 1 Affinity Capture-RNA
YKL070W YKL070W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MNR2 YKL064W Vacuolar membrane protein required for magnesium homeostasis physical 1 1 1 Affinity Capture-RNA
MSN4 YKL062W Stress-responsive transcriptional activator physical 1 1 1 Affinity Capture-RNA
NUP120 YKL057C Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
YKL050C YKL050C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
PHD1 YKL043W Transcriptional activator that enhances pseudohyphal growth physical 1 1 1 Affinity Capture-RNA
PTM1 YKL039W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
TUL1 YKL034W Subunit of the DSC ubiquitin ligase complex physical 1 1 1 Affinity Capture-RNA
PAN3 YKL025C Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex physical 1 1 1 Affinity Capture-RNA
PUT3 YKL015W Transcriptional activator physical 1 1 1 Affinity Capture-RNA
URB1 YKL014C Protein required for the normal accumulation of 25S and 5.8S rRNAs physical 1 1 1 Affinity Capture-RNA
UFD4 YKL010C Ubiquitin-protein ligase (E3) physical 1 1 1 Affinity Capture-RNA
PAP1 YKR002W Poly(A) polymerase physical 1 1 1 Affinity Capture-RNA
TOF2 YKR010C Protein required for rDNA silencing and mitotic rDNA condensation physical 1 1 1 Affinity Capture-RNA
YKR018C YKR018C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SAP190 YKR028W Protein that forms a complex with the Sit4p protein phosphatase physical 1 1 1 Affinity Capture-RNA
KTR2 YKR061W Mannosyltransferase involved in N-linked protein glycosylation physical 1 1 1 Affinity Capture-RNA
OAF3 YKR064W Putative transcriptional repressor with Zn(2)-Cys(6) finger physical 1 1 1 Affinity Capture-RNA
VPS501 YKR078W Vacuolar SNX-BAR protein physical 1 1 1 Affinity Capture-RNA
TRZ1 YKR079C tRNA 3'-end processing endonuclease tRNase Z physical 1 1 1 Affinity Capture-RNA
NUP133 YKR082W Subunit of Nup84p subcomplex of nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
PRP16 YKR086W DEAH-box RNA helicase physical 1 1 1 Affinity Capture-RNA
TGL4 YKR089C Multifunctional lipase/hydrolase/phospholipase physical 1 1 1 Affinity Capture-RNA
UBP11 YKR098C Ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
SKG1 YKR100C Transmembrane protein with a role in cell wall polymer composition physical 1 1 1 Affinity Capture-RNA
PAU18 YLL064C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
YCT1 YLL055W High-affinity cysteine-specific transporter physical 1 1 1 Affinity Capture-RNA
YLL054C YLL054C Putative protein of unknown function with similarity to Pip2p physical 1 1 1 Affinity Capture-RNA
YBT1 YLL048C Transporter of the ATP-binding cassette (ABC) family physical 1 1 1 Affinity Capture-RNA
YLL032C YLL032C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
TPO1 YLL028W Polyamine transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
LMO1 YLL007C Homolog of mammalian ELMO (Engulfment and celL MOtility) physical 1 1 1 Affinity Capture-RNA
SFI1 YLL003W Centrin (Cdc31p)-binding protein required for SPB duplication physical 1 1 1 Affinity Capture-RNA
YLR001C YLR001C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
THI73 YLR004C Putative plasma membrane permease physical 1 1 1 Affinity Capture-RNA
PPR1 YLR014C Zinc finger transcription factor physical 1 1 1 Affinity Capture-RNA
PSR2 YLR019W Putative plasma membrane phosphatase physical 1 1 1 Affinity Capture-RNA
YEH2 YLR020C Steryl ester hydrolase physical 1 1 1 Affinity Capture-RNA
RAD5 YLR032W DNA helicase/Ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
RIC1 YLR039C Protein involved in retrograde transport to the cis-Golgi network physical 1 1 1 Affinity Capture-RNA
STU2 YLR045C Microtubule polymerase of the XMAP215/Dis1 family physical 1 1 1 Affinity Capture-RNA
YLR046C YLR046C Putative membrane protein physical 1 1 1 Affinity Capture-RNA
SPT8 YLR055C Subunit of the SAGA transcriptional regulatory complex physical 1 1 1 Affinity Capture-RNA
MNL2 YLR057W Putative mannosidase involved in ER-associated protein degradation physical 1 1 1 Affinity Capture-RNA
PET309 YLR067C Specific translational activator for the COX1 mRNA physical 1 1 1 Affinity Capture-RNA
RGR1 YLR071C Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
LAM6 YLR072W Sterol transporter that transfers sterols between membranes physical 1 1 1 Affinity Capture-RNA
SMC4 YLR086W Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
XDJ1 YLR090W Chaperone with a role in facilitating mitochondrial protein import physical 1 1 1 Affinity Capture-RNA
YLR108C YLR108C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
MSL5 YLR116W Component of commitment complex physical 1 1 1 Affinity Capture-RNA
YPS1 YLR120C Aspartic protease physical 1 1 1 Affinity Capture-RNA
ZRT2 YLR130C Low-affinity zinc transporter of the plasma membrane physical 1 1 1 Affinity Capture-RNA
NHA1 YLR138W Na+/H+ antiporter physical 1 1 1 Affinity Capture-RNA
PEP3 YLR148W Component of CORVET membrane tethering complex physical 1 1 1 Affinity Capture-RNA
YLR152C YLR152C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SEC10 YLR166C Essential 100kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
TAG1 YLR173W Vacuolar membrane protein involved in termination of autophagy physical 1 1 1 Affinity Capture-RNA
YLR177W YLR177W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SWI6 YLR182W Transcription cofactor physical 1 1 1 Affinity Capture-RNA
SWI6 YLR182W Transcription cofactor genetic 1 1 1 Negative Genetic
MDL1 YLR188W Mitochondrial inner membrane half-type ABC transporter physical 1 1 1 Affinity Capture-RNA
UCC1 YLR224W F-box protein and component of SCF ubiquitin ligase complexes physical 1 1 1 Affinity Capture-RNA
THI7 YLR237W Plasma membrane transporter responsible for the uptake of thiamine physical 1 1 1 Affinity Capture-RNA
VPS34 YLR240W Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate physical 1 1 1 Affinity Capture-RNA
YEF3 YLR249W Translation elongation factor 3 physical 1 1 1 Affinity Capture-RNA
NEJ1 YLR265C DNA end-binding protein required for nonhomologous end joining (NHEJ) physical 1 1 1 Affinity Capture-RNA
PDR8 YLR266C Transcription factor physical 1 1 1 Affinity Capture-RNA
YCS4 YLR272C Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
PIG1 YLR273C Putative targeting subunit for type-1 protein phosphatase Glc7p physical 1 1 1 Affinity Capture-RNA
MCM5 YLR274W Component of the Mcm2-7 hexameric helicase complex physical 1 1 1 Affinity Capture-RNA
YSH1 YLR277C Endoribonuclease physical 1 1 1 Affinity Capture-RNA
STT4 YLR305C Phosphatidylinositol-4-kinase physical 1 1 1 Affinity Capture-RNA
SPH1 YLR313C Protein involved in shmoo formation and bipolar bud site selection physical 1 1 1 Affinity Capture-RNA
REC102 YLR329W Protein involved in early stages of meiotic recombination physical 1 1 1 Affinity Capture-RNA
VRP1 YLR337C Verprolin, proline-rich actin-associated protein physical 1 1 1 Affinity Capture-RNA
KAP95 YLR347C Karyopherin beta physical 1 1 1 Affinity Capture-RNA
LUG1 YLR352W Protein of unknown function with similarity to F-box proteins physical 1 1 1 Affinity Capture-RNA
VPS38 YLR360W Part of a Vps34p phosphatidylinositol 3-kinase complex physical 1 1 1 Affinity Capture-RNA
VID22 YLR373C G-quadruplex (G4) DNA binding protein physical 1 1 1 Affinity Capture-RNA
NAM2 YLR382C Mitochondrial leucyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
SMC6 YLR383W Subunit of the SMC5-SMC6 complex physical 1 1 1 Affinity Capture-RNA
VAC14 YLR386W Enzyme regulator physical 1 1 1 Affinity Capture-RNA
REH1 YLR387C Cytoplasmic 60S subunit biogenesis factor physical 1 1 1 Affinity Capture-RNA
STE23 YLR389C Metalloprotease physical 1 1 1 Affinity Capture-RNA
VPS33 YLR396C ATP-binding protein that is a subunit of the HOPS and CORVET complexes physical 1 1 1 Affinity Capture-RNA
SKI2 YLR398C Ski complex component and putative RNA helicase physical 1 1 1 Affinity Capture-RNA
UTP21 YLR409C Subunit of U3-containing 90S preribosome and SSU processome complexes physical 1 1 1 Affinity Capture-RNA
VIP1 YLR410W Bifunctional inositol pyrophosphate kinase and phosphatase physical 1 1 1 Affinity Capture-RNA
VPS36 YLR417W Component of the ESCRT-II complex physical 1 1 1 Affinity Capture-RNA
YLR419W YLR419W Putative helicase with limited sequence similarity to human Rb protein physical 1 1 1 Affinity Capture-RNA
MAG2 YLR427W Cytoplasmic protein of unknown function physical 1 1 1 Affinity Capture-RNA
SEC39 YLR440C Component of the Dsl1p tethering complex physical 1 1 1 Affinity Capture-RNA
SIR3 YLR442C Silencing protein physical 1 1 1 Affinity Capture-RNA
YLR446W YLR446W Putative hexokinase physical 1 1 1 Affinity Capture-RNA
LEU3 YLR451W Zinc-knuckle transcription factor, repressor and activator physical 1 1 1 Affinity Capture-RNA
YLR462W YLR462W Putative protein of unknown function with similarity to helicases physical 1 1 1 Affinity Capture-RNA
MSC1 YML128C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
NGL3 YML118W 3'-5' exonuclease specific for poly-A RNAs physical 1 1 1 Affinity Capture-RNA
ZDS2 YML109W Protein with a role in regulating Swe1p-dependent polarized growth physical 1 1 1 Affinity Capture-RNA
MDM1 YML104C PtdIns-3-P binding protein that tethers the ER to vacuoles at NVJs physical 1 1 1 Affinity Capture-RNA
NUP188 YML103C Subunit of the inner ring of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
RPM2 YML091C Protein subunit of mitochondrial RNase P physical 1 1 1 Affinity Capture-RNA
UFO1 YML088W F-box receptor protein physical 1 1 1 Affinity Capture-RNA
TDA9 YML081W Transcription factor that regulates acetate production physical 1 1 1 Affinity Capture-RNA
TCB3 YML072C Cortical ER protein involved in ER-plasma membrane tethering physical 1 1 1 Affinity Capture-RNA
ITT1 YML068W Protein that modulates the efficiency of translation termination physical 1 1 1 Affinity Capture-RNA
ORC1 YML065W Largest subunit of the origin recognition complex physical 1 1 1 Affinity Capture-RNA
PIF1 YML061C DNA helicase, potent G-quadruplex DNA binder/unwinder physical 1 1 1 Affinity Capture-RNA
RSE1 YML049C Protein involved in pre-mRNA splicing physical 1 1 1 Affinity Capture-RNA
PRP39 YML046W U1 snRNP protein involved in splicing physical 1 1 1 Affinity Capture-RNA
YMD8 YML038C Putative nucleotide sugar transporter physical 1 1 1 Affinity Capture-RNA
YML037C YML037C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RAD52 YML032C Protein involved in homologous recombination physical 1 1 1 Affinity Capture-RNA
NDC1 YML031W Subunit of the transmembrane ring of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
USA1 YML029W Scaffold subunit of the Hrd1p ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
NSE5 YML023C Component of the SMC5-SMC6 complex physical 1 1 1 Affinity Capture-RNA
NSE5 YML023C Component of the SMC5-SMC6 complex genetic 1 1 1 Positive Genetic
YML020W YML020W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PPZ1 YML016C Serine/threonine protein phosphatase Z, isoform of Ppz2p physical 1 1 1 Affinity Capture-RNA
YAP1 YML007W Basic leucine zipper (bZIP) transcription factor physical 1 1 1 Affinity Capture-RNA
YML003W YML003W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YML002W YML002W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PLB2 YMR006C Phospholipase B (lysophospholipase) involved in lipid metabolism physical 1 1 1 Affinity Capture-RNA
SEC59 YMR013C Dolichol kinase physical 1 1 1 Affinity Capture-RNA
PEX9 YMR018W Peroxisomal membrane signal receptor for peroxisomal matrix proteins physical 1 1 1 Affinity Capture-RNA
STB4 YMR019W Putative transcription factor physical 1 1 1 Affinity Capture-RNA
MIH1 YMR036C Protein tyrosine phosphatase physical 1 1 1 Affinity Capture-RNA
NUP116 YMR047C FG-nucleoporin component of central core of the nuclear pore complex physical 1 1 1 Affinity Capture-RNA
STB2 YMR053C Protein that interacts with Sin3p in a two-hybrid assay physical 1 1 1 Affinity Capture-RNA
RIM9 YMR063W Plasma membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
KAR5 YMR065W Protein required for nuclear membrane fusion during karyogamy physical 1 1 1 Affinity Capture-RNA
SOV1 YMR066W Mitochondrial protein of unknown function physical 1 1 1 Affinity Capture-RNA
NAT4 YMR069W N alpha-acetyl-transferase physical 1 1 1 Affinity Capture-RNA
PDS5 YMR076C Cohesion maintenance factor physical 1 1 1 Affinity Capture-RNA
NAM7 YMR080C ATP-dependent RNA helicase of the SFI superfamily physical 1 1 1 Affinity Capture-RNA
SEG1 YMR086W Component of eisosome required for proper eisosome assembly physical 1 1 1 Affinity Capture-RNA
VBA1 YMR088C Permease of basic amino acids in the vacuolar membrane physical 1 1 1 Affinity Capture-RNA
YTA12 YMR089C Mitochondrial inner membrane m-AAA protease component physical 1 1 1 Affinity Capture-RNA
LAF1 YMR102C Sterol-binding beta-propeller protein physical 1 1 1 Affinity Capture-RNA
YPK2 YMR104C AGC-type S/T protein kinase physical 1 1 1 Affinity Capture-RNA
YKU80 YMR106C Subunit of telomeric Ku complex (Yku70p-Yku80p) physical 1 1 1 Affinity Capture-RNA
MYO5 YMR109W One of two type I myosin motors physical 1 1 1 Affinity Capture-RNA
SPC24 YMR117C Component of the kinetochore-associated Ndc80 complex physical 1 1 1 Affinity Capture-RNA
STO1 YMR125W Large subunit of the nuclear mRNA cap-binding protein complex physical 1 1 1 Affinity Capture-RNA
POM152 YMR129W Glycoprotein subunit of transmembrane ring of nuclear pore complex physical 1 1 1 Affinity Capture-RNA
PSO2 YMR137C Nuclease required for DNA single- and double-strand break repair physical 1 1 1 Affinity Capture-RNA
RIM11 YMR139W Protein kinase physical 1 1 1 Affinity Capture-RNA
SIP5 YMR140W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
YMR155W YMR155W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YMR160W YMR160W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
MME1 YMR166C Transporter of the mitochondrial inner membrane that exports magnesium physical 1 1 1 Affinity Capture-RNA
MLH1 YMR167W Protein required for mismatch repair in mitosis and meiosis physical 1 1 1 Affinity Capture-RNA
MMT1 YMR177W Putative metal transporter involved in mitochondrial iron accumulation physical 1 1 1 Affinity Capture-RNA
YMR181C YMR181C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RTP1 YMR185W Protein required for the nuclear import and biogenesis of RNA pol II physical 1 1 1 Affinity Capture-RNA
YMR196W YMR196W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
UBP8 YMR223W Ubiquitin-specific protease component of the SAGA acetylation complex physical 1 1 1 Affinity Capture-RNA
RRP5 YMR229C RNA binding protein involved in synthesis of 18S and 5.8S rRNAs physical 1 1 1 Affinity Capture-RNA
PEP5 YMR231W Histone E3 ligase, component of CORVET membrane tethering complex physical 1 1 1 Affinity Capture-RNA
ZRC1 YMR243C Vacuolar membrane zinc transporter physical 1 1 1 Affinity Capture-RNA
RKR1 YMR247C RING domain E3 ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
PET111 YMR257C Mitochondrial translational activator specific for the COX2 mRNA physical 1 1 1 Affinity Capture-RNA
ROY1 YMR258C GTPase inhibitor with similarity to F-box proteins physical 1 1 1 Affinity Capture-RNA
TRM732 YMR259C Protein involved in 2'-O-methylation of C32 of substrate tRNAs physical 1 1 1 Affinity Capture-RNA
TPS3 YMR261C Regulatory subunit of trehalose-6-phosphate synthase/phosphatase physical 1 1 1 Affinity Capture-RNA
RSN1 YMR266W Membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
ZDS1 YMR273C Protein with a role in regulating Swe1p-dependent polarized growth physical 1 1 1 Affinity Capture-RNA
YKU70 YMR284W Subunit of the telomeric Ku complex (Yku70p-Yku80p) physical 1 1 1 Affinity Capture-RNA
YME2 YMR302C Integral inner mitochondrial membrane protein physical 1 1 1 Affinity Capture-RNA
UBP15 YMR304W Ubiquitin-specific protease involved in protein deubiquitination physical 1 1 1 Affinity Capture-RNA
PSE1 YMR308C Karyopherin/importin that interacts with the nuclear pore complex physical 1 1 1 Affinity Capture-RNA
NIP1 YMR309C eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3) physical 1 1 1 Affinity Capture-RNA
TGL3 YMR313C Bifunctional triacylglycerol lipase and LPE acyltransferase physical 1 1 1 Affinity Capture-RNA
YMR317W YMR317W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PEX6 YNL329C AAA-peroxin physical 1 1 1 Affinity Capture-RNA
SKP2 YNL311C F-box protein of unknown function physical 1 1 1 Affinity Capture-RNA
MON2 YNL297C Protein with a role in endocytosis and vacuole integrity physical 1 1 1 Affinity Capture-RNA
MRX6 YNL295W Mitochondrial ribosome-associated protein physical 1 1 1 Affinity Capture-RNA
RIM21 YNL294C pH sensor molecule, component of the RIM101 pathway physical 1 1 1 Affinity Capture-RNA
MSB3 YNL293W Rab GTPase-activating protein physical 1 1 1 Affinity Capture-RNA
MID1 YNL291C Stretch-activated Ca2+-permeable cation channel physical 1 1 1 Affinity Capture-RNA
SEC21 YNL287W Gamma subunit of coatomer physical 1 1 1 Affinity Capture-RNA
PRM1 YNL279W Pheromone-regulated multispanning membrane protein physical 1 1 1 Affinity Capture-RNA
TOF1 YNL273W Subunit of a replication-pausing checkpoint complex physical 1 1 1 Affinity Capture-RNA
SEC2 YNL272C Guanyl-nucleotide exchange factor for the small G-protein Sec4p physical 1 1 1 Affinity Capture-RNA
PIK1 YNL267W Phosphatidylinositol 4-kinase physical 1 1 1 Affinity Capture-RNA
POL2 YNL262W Catalytic subunit of DNA polymerase (II) epsilon physical 1 1 1 Affinity Capture-RNA
POL2 YNL262W Catalytic subunit of DNA polymerase (II) epsilon genetic 1 1 1 Negative Genetic
ORC5 YNL261W Subunit of the origin recognition complex (ORC) physical 1 1 1 Affinity Capture-RNA
ORC5 YNL261W Subunit of the origin recognition complex (ORC) genetic 1 1 1 Synthetic Lethality
SIP3 YNL257C Putative sterol transfer protein physical 1 1 1 Affinity Capture-RNA
RTC4 YNL254C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
NRD1 YNL251C RNA-binding subunit of Nrd1 complex physical 1 1 1 Affinity Capture-RNA
RAD50 YNL250W Subunit of MRX complex with Mre11p and Xrs2p physical 1 1 1 Affinity Capture-RNA
SLA2 YNL243W Adaptor protein that links actin to clathrin and endocytosis physical 1 1 1 Affinity Capture-RNA
SIN4 YNL236W Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
YNL234W YNL234W Protein of unknown function with similarity to globins physical 1 1 1 Affinity Capture-RNA
POP1 YNL221C Subunit of RNase MRP, nuclear RNase P and telomerase complexes physical 1 1 1 Affinity Capture-RNA
MGS1 YNL218W Protein with DNA-dependent ATPase and ssDNA annealing activities physical 1 1 1 Affinity Capture-RNA
RAP1 YNL216W Essential DNA-binding transcription regulator that binds many loci physical 1 1 1 Affinity Capture-RNA
RAP1 YNL216W Essential DNA-binding transcription regulator that binds many loci genetic 1 1 1 Negative Genetic
VID27 YNL212W Cytoplasmic protein of unknown function physical 1 1 1 Affinity Capture-RNA
SPS18 YNL204C Protein of unknown function, contains a putative zinc-binding domain physical 1 1 1 Affinity Capture-RNA
PSY2 YNL201C Subunit of protein phosphatase PP4 complex physical 1 1 1 Affinity Capture-RNA
YNL193W YNL193W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SWT21 YNL187W Protein involved in mRNA splicing physical 1 1 1 Affinity Capture-RNA
UBP10 YNL186W Ubiquitin-specific protease, deubiquitinates Ub-protein moieties physical 1 1 1 Affinity Capture-RNA
NPR1 YNL183C Protein kinase physical 1 1 1 Affinity Capture-RNA
RIA1 YNL163C Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis physical 1 1 1 Affinity Capture-RNA
THO2 YNL139C Subunit of the THO complex physical 1 1 1 Affinity Capture-RNA
NAM9 YNL137C Mitochondrial ribosomal component of the small subunit physical 1 1 1 Affinity Capture-RNA
KRE33 YNL132W Acetyltransferase required for biogenesis of small ribosomal subunit physical 1 1 1 Affinity Capture-RNA
SPC98 YNL126W Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex physical 1 1 1 Affinity Capture-RNA
POL1 YNL102W Catalytic subunit of the DNA polymerase I alpha-primase complex physical 1 1 1 Affinity Capture-RNA
YNL095C YNL095C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
TOP2 YNL088W Topoisomerase II physical 1 1 1 Affinity Capture-RNA
TOP2 YNL088W Topoisomerase II genetic 1 1 1 Negative Genetic
TCB2 YNL087W ER protein involved in ER-plasma membrane tethering physical 1 1 1 Affinity Capture-RNA
MKT1 YNL085W Protein similar to nucleases that forms a complex with Pbp1p physical 1 1 1 Affinity Capture-RNA
SAL1 YNL083W ADP/ATP transporter physical 1 1 1 Affinity Capture-RNA
PMS1 YNL082W ATP-binding protein required for mismatch repair physical 1 1 1 Affinity Capture-RNA
MKS1 YNL076W Pleiotropic negative transcriptional regulator physical 1 1 1 Affinity Capture-RNA
MSK1 YNL073W Mitochondrial lysine-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
SUN4 YNL066W Cell wall protein related to glucanases localized in birth scars physical 1 1 1 Affinity Capture-RNA
SFB2 YNL049C Component of the Sec23p-Sfb2p heterodimer of the COPII vesicle coat physical 1 1 1 Affinity Capture-RNA
SLM2 YNL047C Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p physical 1 1 1 Affinity Capture-RNA
SIW14 YNL032W Inositol phosphatase involved in inositol pyrophosphate metabolism physical 1 1 1 Affinity Capture-RNA
SSN8 YNL025C Cyclin-like component of RNA polymerase II holoenzyme physical 1 1 1 Affinity Capture-RNA
YNL011C YNL011C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PRP2 YNR011C RNA-dependent DExD/H-box ATPase physical 1 1 1 Affinity Capture-RNA
PRP2 YNR011C RNA-dependent DExD/H-box ATPase genetic 1 1 1 Negative Genetic
PHO91 YNR013C Low-affinity vacuolar phosphate transporter physical 1 1 1 Affinity Capture-RNA
PET494 YNR045W Mitochondrial translational activator specific for the COX3 mRNA physical 1 1 1 Affinity Capture-RNA
MNT4 YNR059W Putative alpha-1,3-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
YNR066C YNR066C Putative membrane-localized protein of unknown function physical 1 1 1 Affinity Capture-RNA
YNR068C YNR068C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YNR071C YNR071C Putative aldose 1-epimerase physical 1 1 1 Affinity Capture-RNA
PPM2 YOL141W AdoMet-dependent tRNA methyltransferase physical 1 1 1 Affinity Capture-RNA
PFK27 YOL136C 6-phosphofructo-2-kinase physical 1 1 1 Affinity Capture-RNA
MCH4 YOL119C Protein with similarity to mammalian monocarboxylate permeases physical 1 1 1 Affinity Capture-RNA
RRI2 YOL117W Subunit of the COP9 signalosome (CSN) complex physical 1 1 1 Affinity Capture-RNA
MSN1 YOL116W Transcriptional activator physical 1 1 1 Affinity Capture-RNA
SKM1 YOL113W Member of the PAK family of serine/threonine protein kinases physical 1 1 1 Affinity Capture-RNA
NDJ1 YOL104C Protein that regulates meiotic SPB cohesion and telomere clustering physical 1 1 1 Affinity Capture-RNA
ITR2 YOL103W Myo-inositol transporter physical 1 1 1 Affinity Capture-RNA
PKH2 YOL100W Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
SDD3 YOL098C Putative metalloprotease physical 1 1 1 Affinity Capture-RNA
MSH2 YOL090W Protein that binds to DNA mismatches physical 1 1 1 Affinity Capture-RNA
PHM7 YOL084W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
MDM20 YOL076W Non-catalytic subunit of the NatB N-terminal acetyltransferase physical 1 1 1 Affinity Capture-RNA
YOL075C YOL075C Putative ABC transporter physical 1 1 1 Affinity Capture-RNA
MAM3 YOL060C Protein involved in magnesium homeostasis physical 1 1 1 Affinity Capture-RNA
YOL057W YOL057W Dipeptidyl-peptidase III physical 1 1 1 Affinity Capture-RNA
NGL1 YOL042W Putative endonuclease physical 1 1 1 Affinity Capture-RNA
YOL036W YOL036W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SMC5 YOL034W Subunit of the SMC5-SMC6 complex physical 1 1 1 Affinity Capture-RNA
YOL029C YOL029C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
LAG2 YOL025W Protein that negatively regulates the SCF E3-ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
TAT2 YOL020W High affinity tryptophan and tyrosine permease physical 1 1 1 Affinity Capture-RNA
PHO80 YOL001W Cyclin physical 1 1 1 Affinity Capture-RNA
SLG1 YOR008C Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway physical 1 1 1 Affinity Capture-RNA
TIR2 YOR010C Putative cell wall mannoprotein physical 1 1 1 Affinity Capture-RNA
RTS1 YOR014W B-type regulatory subunit of protein phosphatase 2A (PP2A) physical 1 1 1 Affinity Capture-RNA
RTS1 YOR014W B-type regulatory subunit of protein phosphatase 2A (PP2A) genetic 1 1 1 Negative Genetic
PET127 YOR017W Protein with a role in 5'-end processing of mitochondrial RNAs physical 1 1 1 Affinity Capture-RNA
ROD1 YOR018W Alpha-arrestin involved in ubiquitin-dependent endocytosis physical 1 1 1 Affinity Capture-RNA
YOR034C-A YOR034C-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SHE4 YOR035C Protein containing a UCS (UNC-45/CRO1/SHE4) domain physical 1 1 1 Affinity Capture-RNA
WHI2 YOR043W Negative regulator of TORC1 in response to limiting leucine physical 1 1 1 Affinity Capture-RNA
RAT1 YOR048C Nuclear 5' to 3' single-stranded RNA exonuclease physical 1 1 1 Affinity Capture-RNA
RSB1 YOR049C Sphingoid long-chain base (LCB) efflux transporter physical 1 1 1 Affinity Capture-RNA
VHS3 YOR054C Negative regulatory subunit of protein phosphatase 1 Ppz1p physical 1 1 1 Affinity Capture-RNA
LPL1 YOR059C Phospholipase physical 1 1 1 Affinity Capture-RNA
VPS5 YOR069W Nexin-1 homolog physical 1 1 1 Affinity Capture-RNA
NRT1 YOR071C High-affinity nicotinamide riboside transporter physical 1 1 1 Affinity Capture-RNA
SKI7 YOR076C GTP-binding protein that couples the Ski complex and exosome physical 1 1 1 Affinity Capture-RNA
TGL5 YOR081C Bifunctional triacylglycerol lipase and LPA acyltransferase physical 1 1 1 Affinity Capture-RNA
TCB1 YOR086C Lipid-binding ER protein involved in ER-plasma membrane tethering physical 1 1 1 Affinity Capture-RNA
RPO31 YOR116C RNA polymerase III largest subunit C160 physical 1 1 1 Affinity Capture-RNA
RTC5 YOR118W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
UBP2 YOR124C Ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
SIA1 YOR137C Protein of unassigned function physical 1 1 1 Affinity Capture-RNA
RUP1 YOR138C Protein that regulates ubiquitination of Rsp5p physical 1 1 1 Affinity Capture-RNA
MDM32 YOR147W Mitochondrial inner membrane protein with similarity to Mdm31p physical 1 1 1 Affinity Capture-RNA
SMP3 YOR149C Alpha 1,2-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
SMP3 YOR149C Alpha 1,2-mannosyltransferase genetic 1 1 1 Positive Genetic
RPB2 YOR151C RNA polymerase II second largest subunit B150 physical 1 1 1 Affinity Capture-RNA
PDR5 YOR153W Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
SLP1 YOR154W Glycosylated integral ER membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
MTR10 YOR160W Nuclear import receptor physical 1 1 1 Affinity Capture-RNA
YRR1 YOR162C Zn2-Cys6 zinc-finger transcription factor physical 1 1 1 Affinity Capture-RNA
SEY1 YOR165W Dynamin-like GTPase that mediates homotypic ER fusion physical 1 1 1 Affinity Capture-RNA
SWT1 YOR166C RNA endoribonuclease involved in perinuclear mRNP quality control physical 1 1 1 Affinity Capture-RNA
LCB4 YOR171C Sphingoid long-chain base kinase physical 1 1 1 Affinity Capture-RNA
YRM1 YOR172W Zinc finger transcription factor involved in multidrug resistance physical 1 1 1 Affinity Capture-RNA
MSB1 YOR188W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SPR1 YOR190W Sporulation-specific exo-1,3-beta-glucanase physical 1 1 1 Affinity Capture-RNA
THI72 YOR192C Transporter of thiamine or related compound physical 1 1 1 Affinity Capture-RNA
PTP2 YOR208W Phosphotyrosine-specific phosphatase physical 1 1 1 Affinity Capture-RNA
MGM1 YOR211C Mitochondrial GTPase, present in complex with Ugo1p and Fzo1p physical 1 1 1 Affinity Capture-RNA
STE13 YOR219C Dipeptidyl aminopeptidase physical 1 1 1 Affinity Capture-RNA
MKK1 YOR231W MAPKK involved in the protein kinase C signaling pathway physical 1 1 1 Affinity Capture-RNA
KIN4 YOR233W Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
SSP2 YOR242C Sporulation specific protein that localizes to the spore wall physical 1 1 1 Affinity Capture-RNA
SRL1 YOR247W Mannoprotein that exhibits a tight association with the cell wall physical 1 1 1 Affinity Capture-RNA
TRE2 YOR256C Transferrin receptor-like protein physical 1 1 1 Affinity Capture-RNA
PAC1 YOR269W Regulator of dynein, involved in intracellular transport physical 1 1 1 Affinity Capture-RNA
TPO4 YOR273C Polyamine transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
RIM20 YOR275C Protein involved in proteolytic activation of Rim101p physical 1 1 1 Affinity Capture-RNA
YOR296W YOR296W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MUM3 YOR298W Protein of unknown function involved in outer spore wall organization physical 1 1 1 Affinity Capture-RNA
MCH5 YOR306C Plasma membrane riboflavin transporter physical 1 1 1 Affinity Capture-RNA
SLY41 YOR307C Protein involved in ER-to-Golgi transport physical 1 1 1 Affinity Capture-RNA
LDB19 YOR322C Alpha-arrestin, Ub-ligase adaptor for Rsp5p physical 1 1 1 Affinity Capture-RNA
MYO2 YOR326W Type V myosin motor involved in actin-based transport of cargos physical 1 1 1 Affinity Capture-RNA
PDR10 YOR328W ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
SCD5 YOR329C Protein required for normal actin organization and endocytosis physical 1 1 1 Affinity Capture-RNA
MRS2 YOR334W Mitochondrial inner membrane Mg(2+) channel physical 1 1 1 Affinity Capture-RNA
KRE5 YOR336W Protein required for beta-1,6 glucan biosynthesis physical 1 1 1 Affinity Capture-RNA
RPA190 YOR341W RNA polymerase I largest subunit A190 physical 1 1 1 Affinity Capture-RNA
YOR342C YOR342C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
REV1 YOR346W Deoxycytidyl transferase physical 1 1 1 Affinity Capture-RNA
MNE1 YOR350C Protein involved in splicing Group I aI5-beta intron from COX1 mRNA physical 1 1 1 Affinity Capture-RNA
MNE1 YOR350C Protein involved in splicing Group I aI5-beta intron from COX1 mRNA genetic 1 1 1 Negative Genetic
SOG2 YOR353C Key component of the RAM signaling network physical 1 1 1 Affinity Capture-RNA
MSC6 YOR354C Multicopy suppressor of HER2 involved in mitochondrial translation physical 1 1 1 Affinity Capture-RNA
VTS1 YOR359W Flap-structured DNA-binding and RNA-binding protein physical 1 1 1 Affinity Capture-RNA
VTS1 YOR359W Flap-structured DNA-binding and RNA-binding protein genetic 1 1 1 Negative Genetic
PDE2 YOR360C High-affinity cyclic AMP phosphodiesterase physical 1 1 1 Affinity Capture-RNA
PIP2 YOR363C Autoregulatory, oleate-activated transcription factor physical 1 1 1 Affinity Capture-RNA
MRS6 YOR370C Rab escort protein physical 1 1 1 Affinity Capture-RNA
NUD1 YOR373W Mitotic exit network (MEN) scaffold protein physical 1 1 1 Affinity Capture-RNA
PHR1 YOR386W DNA photolyase involved in photoreactivation physical 1 1 1 Affinity Capture-RNA
PBI1 YPL272C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MDL2 YPL270W Mitochondrial inner membrane half-type ABC transporter physical 1 1 1 Affinity Capture-RNA
KAR9 YPL269W Spindle positioning factor physical 1 1 1 Affinity Capture-RNA
PLC1 YPL268W Phospholipase C physical 1 1 1 Affinity Capture-RNA
THI21 YPL258C Hydroxymethylpyrimidine (HMP) and HMP-phosphate kinase physical 1 1 1 Affinity Capture-RNA
MMT2 YPL224C Putative metal transporter involved in mitochondrial iron accumulation physical 1 1 1 Affinity Capture-RNA
YPL216W YPL216W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
THI6 YPL214C Thiamine-phosphate diphosphorylase and hydroxyethylthiazole kinase physical 1 1 1 Affinity Capture-RNA
MRN1 YPL184C RNA-binding protein that may be involved in translational regulation physical 1 1 1 Affinity Capture-RNA
RTT10 YPL183C WD40 domain-containing protein involved in endosomal recycling physical 1 1 1 Affinity Capture-RNA
TCO89 YPL180W Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p) physical 1 1 1 Affinity Capture-RNA
PPQ1 YPL179W Protein phosphatase that regulates the mating response physical 1 1 1 Affinity Capture-RNA
TRE1 YPL176C Transferrin receptor-like protein physical 1 1 1 Affinity Capture-RNA
SPT14 YPL175W UDP-glycosyltransferase subunit of the GPI-GnT complex physical 1 1 1 Affinity Capture-RNA
MRX4 YPL168W Protein that associates with mitochondrial ribosome physical 1 1 1 Affinity Capture-RNA
REV3 YPL167C Catalytic subunit of DNA polymerase zeta physical 1 1 1 Affinity Capture-RNA
MLH3 YPL164C Protein involved in DNA mismatch repair and meiotic recombination physical 1 1 1 Affinity Capture-RNA
RAD53 YPL153C DNA damage response kinase physical 1 1 1 Affinity Capture-RNA
YPL150W YPL150W Protein kinase of unknown cellular role physical 1 1 1 Affinity Capture-RNA
PXA1 YPL147W Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa2p physical 1 1 1 Affinity Capture-RNA
KES1 YPL145C Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger physical 1 1 1 Affinity Capture-RNA
MKK2 YPL140C MAPKK involved in the protein kinase C signaling pathway physical 1 1 1 Affinity Capture-RNA
RDS2 YPL133C Transcription factor involved in regulating gluconeogenesis physical 1 1 1 Affinity Capture-RNA
NAN1 YPL126W U3 snoRNP protein physical 1 1 1 Affinity Capture-RNA
KAP120 YPL125W Karyopherin responsible for the nuclear import of Rpf1p physical 1 1 1 Affinity Capture-RNA
YPL113C YPL113C Glyoxylate reductase physical 1 1 1 Affinity Capture-RNA
SYH1 YPL105C Protein of unknown function that influences nuclear pore distribution physical 1 1 1 Affinity Capture-RNA
MSD1 YPL104W Mitochondrial aspartyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
MSY1 YPL097W Mitochondrial tyrosyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
YTA6 YPL074W Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family physical 1 1 1 Affinity Capture-RNA
MUK1 YPL070W Guanine nucleotide exchange factor (GEF) physical 1 1 1 Affinity Capture-RNA
RGL1 YPL066W Regulator of Rho1p signaling, cofactor of Tus1p physical 1 1 1 Affinity Capture-RNA
PDR12 YPL058C Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
LEE1 YPL054W Zinc-finger protein of unknown function physical 1 1 1 Affinity Capture-RNA
VPS16 YPL045W Subunit of the HOPS and the CORVET complexes physical 1 1 1 Affinity Capture-RNA
SSN3 YPL042C Component of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
SVL3 YPL032C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SUV3 YPL029W ATP-dependent RNA helicase physical 1 1 1 Affinity Capture-RNA
SKS1 YPL026C Putative serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
MET12 YPL023C Protein with MTHFR activity in vitro physical 1 1 1 Affinity Capture-RNA
RAD1 YPL022W Single-stranded DNA endonuclease (with Rad10p) physical 1 1 1 Affinity Capture-RNA
VTC3 YPL019C Regulatory subunit of the vacuolar transporter chaperone (VTC) complex physical 1 1 1 Affinity Capture-RNA
SWI1 YPL016W Subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
RRP12 YPL012W Protein required for export of the ribosomal subunits physical 1 1 1 Affinity Capture-RNA
TFC8 YPL007C Subunit of RNA polymerase III transcription initiation factor complex physical 1 1 1 Affinity Capture-RNA
NCR1 YPL006W Vacuolar membrane protein involved with Npc2p in sterol trafficking physical 1 1 1 Affinity Capture-RNA
PDH1 YPR002W Putative 2-methylcitrate dehydratase physical 1 1 1 Affinity Capture-RNA
RPA135 YPR010C RNA polymerase I second largest subunit A135 physical 1 1 1 Affinity Capture-RNA
SDD4 YPR022C Putative transcription factor, as suggested by computational analysis physical 1 1 1 Affinity Capture-RNA
YME1 YPR024W Catalytic subunit of i-AAA protease complex physical 1 1 1 Affinity Capture-RNA
NTO1 YPR031W Subunit of the NuA3 histone acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
SRO7 YPR032W Effector of Rab GTPase Sec4p physical 1 1 1 Affinity Capture-RNA
THP3 YPR045C Protein that may have a role in transcription elongation physical 1 1 1 Affinity Capture-RNA
SEC8 YPR055W Essential 121 kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
MED1 YPR070W Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
MDM36 YPR083W Mitochondrial protein physical 1 1 1 Affinity Capture-RNA
YPR084W YPR084W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YPR089W YPR089W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
NVJ2 YPR091C Lipid-binding ER protein, enriched at nucleus-vacuolar junctions (NVJ) physical 1 1 1 Affinity Capture-RNA
YPR114W YPR114W Protein distantly similar to ceramide synthases, Lag1p and Lac1p physical 1 1 1 Affinity Capture-RNA
RGC1 YPR115W Putative regulator of the Fps1p glycerol channel physical 1 1 1 Affinity Capture-RNA
THI22 YPR121W Protein with similarity to hydroxymethylpyrimidine phosphate kinases physical 1 1 1 Affinity Capture-RNA
MEP3 YPR138C Ammonium permease of high capacity and low affinity physical 1 1 1 Affinity Capture-RNA
NCA2 YPR155C Protein that regulates expression of Fo-F1 ATP synthase subunits physical 1 1 1 Affinity Capture-RNA
TPO3 YPR156C Polyamine transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
KRE6 YPR159W Glucosyl hydrolase required for beta-1,6-glucan biosynthesis physical 1 1 1 Affinity Capture-RNA
MMS1 YPR164W Subunit of E3 ubiquitin ligase complex involved in replication repair physical 1 1 1 Affinity Capture-RNA
SEC23 YPR181C GTPase-activating protein, stimulates the GTPase activity of Sar1p physical 1 1 1 Affinity Capture-RNA
SKI3 YPR189W Ski complex component and TPR protein physical 1 1 1 Affinity Capture-RNA
OPT2 YPR194C Oligopeptide transporter physical 1 1 1 Affinity Capture-RNA
YPR196W YPR196W Putative maltose-responsive transcription factor physical 1 1 1 Affinity Capture-RNA
SGE1 YPR198W Plasma membrane multidrug transporter physical 1 1 1 Affinity Capture-RNA
SEC61 YLR378C Conserved ER protein translocation channel physical 1 1 1 Affinity Capture-MS
RPS0A YGR214W Ribosomal 40S subunit protein S0A physical 1 1 1 Affinity Capture-MS
RPS1A YLR441C Ribosomal protein of the small (40S) subunit physical 1 1 1 Affinity Capture-MS
RPS2 YGL123W Protein component of the small (40S) subunit physical 1 1 1 Affinity Capture-MS
RPS6A YPL090C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS8A YBL072C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS9A YPL081W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS10A YOR293W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS12 YOR369C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS15 YOL040C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS17A YML024W Ribosomal protein 51 (rp51) of the small (40s) subunit physical 1 1 1 Affinity Capture-MS
RPS18A YDR450W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS19A YOL121C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS20 YHL015W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPS22A YJL190C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPL25 YOL127W Ribosomal 60S subunit protein L25 physical 1 1 1 Affinity Capture-MS
RPL26A YLR344W Ribosomal 60S subunit protein L26A physical 1 1 1 Affinity Capture-MS
RPS27A YKL156W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
RPL31A YDL075W Ribosomal 60S subunit protein L31A physical 1 1 1 Affinity Capture-MS
RPS3 YNL178W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-MS
SPT4 YGR063C Spt4p/5p (DSIF) transcription elongation factor complex subunit genetic 1 1 1 Synthetic Rescue
YAF9 YNL107W Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes genetic 1 1 1 Synthetic Lethality
PAC10 YGR078C Part of the heteromeric co-chaperone GimC/prefoldin complex genetic 1 1 1 Negative Genetic
VPH2 YKL119C Integral membrane protein required for V-ATPase function genetic 1 1 1 Negative Genetic
YPT6 YLR262C Rab family GTPase genetic 1 1 1 Negative Genetic
UMP1 YBR173C Chaperone required for correct maturation of the 20S proteasome genetic 1 1 1 Negative Genetic
YKE2 YLR200W Subunit of the heterohexameric Gim/prefoldin protein complex genetic 1 1 1 Negative Genetic
TAF14 YPL129W Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes genetic 1 1 1 Positive Genetic
TAF7 YMR227C TFIID subunit (67 kDa) genetic 1 1 1 Positive Genetic
TFG1 YGR186W TFIIF (Transcription Factor II) largest subunit genetic 1 1 1 Positive Genetic
NDD1 YOR372C Transcriptional activator essential for nuclear division genetic 1 1 1 Synthetic Rescue
SDD1 YEL057C Protein of unknown function genetic 1 1 1 Negative Genetic
PHB1 YGR132C Subunit of the prohibitin complex (Phb1p-Phb2p) genetic 1 1 1 Negative Genetic
ORM2 YLR350W Protein that mediates sphingolipid homeostasis genetic 1 1 1 Negative Genetic
KAR2 YJL034W ATPase involved in protein import into the ER genetic 1 1 1 Positive Genetic
NAT1 YDL040C Subunit of protein N-terminal acetyltransferase NatA genetic 1 1 1 Synthetic Growth Defect
VMA21 YGR105W Integral membrane protein required for V-ATPase function genetic 1 1 1 Synthetic Growth Defect
VOA1 YGR106C ER protein that functions in assembly of the V0 sector of V-ATPase genetic 1 1 1 Synthetic Growth Defect
SWC5 YBR231C Component of the SWR1 complex genetic 1 1 1 Synthetic Growth Defect
TTI1 YKL033W Subunit of the ASTRA complex, involved in chromatin remodeling genetic 1 1 1 Negative Genetic
LSM6 YDR378C Lsm (Like Sm) protein genetic 1 1 1 Positive Genetic
SUT1 YGL162W Zn(II)2Cys6 family transcription factor genetic 1 1 1 Positive Genetic
ROM2 YLR371W Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p genetic 1 1 1 Positive Genetic
RPA49 YNL248C RNA polymerase I subunit A49 genetic 1 1 1 Positive Genetic
TRS23 YDR246W Core component of transport protein particle (TRAPP) complexes I-III genetic 1 1 1 Negative Genetic
NSE3 YDR288W Component of the SMC5-SMC6 complex genetic 1 1 1 Negative Genetic
PRP3 YDR473C Splicing factor genetic 1 1 1 Negative Genetic
SNM1 YDR478W Ribonuclease MRP complex subunit genetic 1 1 1 Negative Genetic
SPB4 YFL002C Putative ATP-dependent RNA helicase genetic 1 1 1 Negative Genetic
OKP1 YGR179C Outer kinetochore protein required for accurate chromosome segregation genetic 1 1 1 Negative Genetic
RRP4 YHR069C Exosome non-catalytic core component genetic 1 1 1 Negative Genetic
ORC3 YLL004W Subunit of the origin recognition complex (ORC) genetic 1 1 1 Negative Genetic
VTI1 YMR197C Protein involved in cis-Golgi membrane traffic genetic 1 1 1 Negative Genetic
TIF11 YMR260C Translation initiation factor eIF1A genetic 1 1 1 Negative Genetic
TIF6 YPR016C Constituent of 66S pre-ribosomal particles genetic 1 1 1 Negative Genetic
PDA1 YER178W E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex genetic 1 1 1 Negative Genetic
MRM2 YGL136C Mitochondrial 2' O-ribose methyltransferase genetic 1 1 1 Negative Genetic
RTF1 YGL244W Subunit of RNAPII-associated chromatin remodeling Paf1 complex genetic 1 1 1 Negative Genetic
SRB2 YHR041C Subunit of the RNA polymerase II mediator complex genetic 1 1 1 Negative Genetic
RPS4B YHR203C Protein component of the small (40S) ribosomal subunit genetic 1 1 1 Negative Genetic
RPE1 YJL121C D-ribulose-5-phosphate 3-epimerase genetic 1 1 1 Negative Genetic
TPK3 YKL166C cAMP-dependent protein kinase catalytic subunit genetic 1 1 1 Negative Genetic
MIC60 YKR016W Component of the MICOS complex genetic 1 1 1 Negative Genetic
RPS0B YLR048W Protein component of the small (40S) ribosomal subunit genetic 1 1 1 Negative Genetic
SND2 YLR065C Protein involved in SRP-independent targeting of substrates to the ER genetic 1 1 1 Negative Genetic
SST2 YLR452C GTPase-activating protein for Gpa1p genetic 1 1 1 Negative Genetic
RCO1 YMR075W Essential component of the Rpd3S histone deacetylase complex genetic 1 1 1 Negative Genetic
SCS7 YMR272C Sphingolipid alpha-hydroxylase genetic 1 1 1 Negative Genetic
YRA1 YDR381W Nuclear polyadenylated RNA-binding protein genetic 1 1 1 Synthetic Rescue
MLP1 YKR095W Myosin-like protein associated with the nuclear envelope genetic 1 1 1 Synthetic Growth Defect
MLP2 YIL149C Myosin-like protein associated with the nuclear envelope genetic 1 1 1 Synthetic Growth Defect
PAP2 YOL115W Non-canonical poly(A) polymerase genetic 1 1 1 Phenotypic Enhancement
MRPS16 YPL013C Mitochondrial ribosomal protein of the small subunit genetic 1 1 1 Negative Genetic
SNT309 YPR101W Member of the NineTeen Complex (NTC) genetic 1 1 1 Negative Genetic
NTG1 YAL015C DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase genetic 1 1 1 Phenotypic Suppression
NTG2 YOL043C DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase genetic 1 1 1 Phenotypic Suppression
SLT2 YHR030C Serine/threonine MAP kinase genetic 1 1 1 Synthetic Rescue
CLU1 YMR012W Subunit of the eukaryotic translation initiation factor 3 (eIF3) physical 1 1 1 Affinity Capture-RNA
ECM29 YHL030W Scaffold protein physical 1 1 1 Affinity Capture-RNA
HSL1 YKL101W Nim1p-related protein kinase physical 1 1 1 Affinity Capture-RNA
END3 YNL084C EH domain-containing protein involved in endocytosis physical 1 1 1 Two-hybrid
CRM1 YGR218W Nuclear export factor, exportin physical 1 1 1 Affinity Capture-RNA
GEA2 YEL022W Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs) physical 1 1 1 Affinity Capture-RNA
INP2 YMR163C Peroxisome-specific receptor important for peroxisome inheritance physical 1 1 1 Affinity Capture-RNA
GLT1 YDL171C NAD(+)-dependent glutamate synthase (GOGAT) physical 1 1 1 Affinity Capture-RNA
CSE2 YNR010W Subunit of the RNA polymerase II mediator complex genetic 1 1 1 Negative Genetic
GAL11 YOL051W Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
COG3 YER157W Essential component of the conserved oligomeric Golgi complex physical 1 1 1 Affinity Capture-RNA
FAB1 YFR019W 1-phosphatidylinositol-3-phosphate 5-kinase physical 1 1 1 Affinity Capture-RNA
HRR25 YPL204W Conserved casein kinase, monopolin subunit physical 1 1 1 Affinity Capture-RNA
BUD3 YCL014W Guanine nucleotide exchange factor (GEF) for Cdc42p physical 1 1 1 Affinity Capture-RNA
ATG26 YLR189C UDP-glucose:sterol glucosyltransferase physical 1 1 1 Affinity Capture-RNA
CCM1 YGR150C Mitochondrial 15S rRNA-binding protein physical 1 1 1 Affinity Capture-RNA
GIN4 YDR507C Protein kinase involved in bud growth and assembly of the septin ring physical 1 1 1 Affinity Capture-RNA
HTZ1 YOL012C Histone variant H2AZ physical 1 1 1 Affinity Capture-MS
ARP8 YOR141C Nuclear actin-related protein involved in chromatin remodeling physical 1 1 1 Affinity Capture-RNA
ARP8 YOR141C Nuclear actin-related protein involved in chromatin remodeling genetic 1 1 1 Positive Genetic
INO80 YGL150C Nucleosome spacing factor physical 1 1 1 Affinity Capture-RNA
IES1 YFL013C Subunit of the INO80 chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
ATG18 YFR021W Phosphoinositide binding protein physical 1 1 1 Affinity Capture-RNA
HER1 YOR227W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
FAS2 YPL231W Alpha subunit of fatty acid synthetase physical 1 1 1 Affinity Capture-RNA
AFG2 YLR397C ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex genetic 1 1 1 Negative Genetic
GIM5 YML094W Subunit of the heterohexameric cochaperone prefoldin complex genetic 1 1 1 Negative Genetic
HMO1 YDR174W Chromatin associated high mobility group (HMG) family member physical 1 1 1 Affinity Capture-MS
DOA4 YDR069C Ubiquitin hydrolase physical 1 1 1 Affinity Capture-RNA
DUR12 YBR208C Urea amidolyase physical 1 1 1 Affinity Capture-RNA
AAP1 YHR047C Arginine/alanine amino peptidase physical 1 1 1 Affinity Capture-RNA
HSP82 YPL240C Hsp90 chaperone genetic 1 1 1 Synthetic Lethality
BLM10 YFL007W Proteasome activator physical 1 1 1 Affinity Capture-RNA
HTA1 YDR225W Histone H2A physical 1 1 1 Reconstituted Complex
HTA1 YDR225W Histone H2A genetic 1 1 1 Synthetic Growth Defect
HTA2 YBL003C Histone H2A genetic 1 1 1 Synthetic Growth Defect
ILV1 YER086W Threonine deaminase, catalyzes first step in isoleucine biosynthesis genetic 1 1 1 Negative Genetic
GPT2 YKR067W Glycerol-3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase physical 1 1 1 Affinity Capture-RNA
ADE3 YGR204W Cytoplasmic trifunctional enzyme physical 1 1 1 Affinity Capture-RNA
CDC6 YJL194W Essential ATP-binding protein required for DNA replication physical 1 1 1 Affinity Capture-RNA
CSE1 YGL238W Nuclear envelope protein that acts as a recycling factor physical 1 1 1 Affinity Capture-RNA
HOS2 YGL194C Histone deacetylase and subunit of Set3 and Rpd3L complexes physical 1 1 1 Affinity Capture-RNA
ABF2 YMR072W Mitochondrial DNA-binding protein physical 1 1 1 Affinity Capture-MS
AVT4 YNL101W Vacuolar transporter physical 1 1 1 Affinity Capture-RNA
BZZ1 YHR114W SH3 domain protein implicated in regulating actin polymerization physical 1 1 1 Affinity Capture-RNA
ECM25 YJL201W Endocytic site protein required for stress-induced cell elongation physical 1 1 1 Affinity Capture-RNA
INP52 YNL106C Polyphosphatidylinositol phosphatase physical 1 1 1 Affinity Capture-RNA
BSP1 YPR171W Adapter that links synaptojanins to the cortical actin cytoskeleton physical 1 1 1 Affinity Capture-RNA
IST2 YBR086C Cortical ER protein involved in ER-plasma membrane (PM) tethering physical 1 1 1 Affinity Capture-RNA
ATG9 YDL149W Transmembrane protein involved in forming Cvt and autophagic vesicles physical 1 1 1 Affinity Capture-RNA
BCK1 YJL095W MAPKKK acting in the protein kinase C signaling pathway physical 1 1 1 Affinity Capture-RNA
ECM30 YLR436C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ALT2 YDR111C Catalytically inactive alanine transaminase physical 1 1 1 Affinity Capture-RNA
BRO1 YPL084W Cytoplasmic class E vacuolar protein sorting (VPS) factor physical 1 1 1 Affinity Capture-RNA
FUN30 YAL019W Snf2p family member with ATP-dependent chromatin remodeling activity physical 1 1 1 Affinity Capture-RNA
FUN30 YAL019W Snf2p family member with ATP-dependent chromatin remodeling activity genetic 1 1 1 Phenotypic Enhancement
DRS2 YAL026C Trans-golgi network aminophospholipid translocase (flippase) physical 1 1 1 Affinity Capture-RNA
FLC2 YAL053W Putative calcium channel involved in calcium release under hypotonic physical 1 1 1 Affinity Capture-RNA
BOI1 YBL085W Protein involved in polar growth, functionally redundant with Boi2p physical 1 1 1 Affinity Capture-RNA
DOT6 YER088C Protein involved in rRNA and ribosome biogenesis physical 1 1 1 Affinity Capture-RNA
CYM1 YDR430C Lysine-specific metalloprotease of the pitrilysin family physical 1 1 1 Affinity Capture-RNA
DIA4 YHR011W Probable mitochondrial seryl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
CDC13 YDL220C Single stranded DNA-binding protein found at TG1-3 telomere G-tails physical 1 1 1 Affinity Capture-RNA
GPH1 YPR160W Glycogen phosphorylase required for the mobilization of glycogen physical 1 1 1 Affinity Capture-RNA
CRZ1 YNL027W Transcription factor, activates transcription of stress response genes physical 1 1 1 Affinity Capture-RNA
BBC1 YJL020C Protein possibly involved in assembly of actin patches physical 1 1 1 Affinity Capture-RNA
AKL1 YBR059C Ser/Thr protein kinase physical 1 1 1 Affinity Capture-RNA
FET4 YMR319C Low-affinity Fe(II) transporter of the plasma membrane physical 1 1 1 Affinity Capture-RNA
ADR1 YDR216W Carbon source-responsive zinc-finger transcription factor physical 1 1 1 Affinity Capture-RNA
HEL2 YDR266C RING finger ubiquitin ligase (E3) physical 1 1 1 Affinity Capture-RNA
IRA2 YOL081W GTPase-activating protein genetic 1 1 1 Negative Genetic
CSR2 YPR030W Nuclear ubiquitin protein ligase binding protein physical 1 1 1 Affinity Capture-RNA
HYP2 YEL034W Translation elongation factor eIF-5A genetic 1 1 1 Positive Genetic
APP1 YNL094W Phosphatidate phosphatase, converts phosphatidate to diacylglycerol physical 1 1 1 Affinity Capture-RNA
HIR3 YJR140C Subunit of the HIR complex physical 1 1 1 Affinity Capture-RNA
CMP2 YML057W Calcineurin A physical 1 1 1 Affinity Capture-RNA
CNB1 YKL190W Calcineurin B genetic 1 1 1 Negative Genetic
GDE1 YPL110C Glycerophosphocholine (GroPCho) phosphodiesterase physical 1 1 1 Affinity Capture-RNA
CDC53 YDL132W Cullin physical 1 1 1 Affinity Capture-RNA
GRR1 YJR090C F-box protein component of an SCF ubiquitin-ligase complex physical 1 1 1 Affinity Capture-RNA
GID7 YCL039W Subunit of GID Complex that binds directly to central component Vid30p physical 1 1 1 Affinity Capture-RNA
FYV10 YIL097W Subunit of GID complex genetic 1 1 1 Negative Genetic
HXT6 YDR343C High-affinity glucose transporter physical 1 1 1 Affinity Capture-RNA
GET2 YER083C Subunit of the GET complex genetic 1 1 1 Negative Genetic
ESL2 YKR096W hEST1A/B (SMG5/6)-like protein physical 1 1 1 Affinity Capture-RNA
CHK1 YBR274W Serine/threonine kinase and DNA damage checkpoint effector physical 1 1 1 Affinity Capture-RNA
BFA1 YJR053W Subunit of a two-component GTPase-activating protein, Bfa1p-Bub2p physical 1 1 1 Affinity Capture-RNA
GYP6 YJL044C GTPase-activating protein (GAP) for yeast Rab family member Ypt6p physical 1 1 1 Affinity Capture-RNA
CDC9 YDL164C DNA ligase I found in nucleus and mitochondria physical 1 1 1 Affinity Capture-RNA
CLN1 YMR199W G1 cyclin involved in regulation of the cell cycle physical 1 1 1 Affinity Capture-RNA
DIP5 YPL265W Dicarboxylic amino acid permease physical 1 1 1 Affinity Capture-RNA
FAR1 YJL157C CDK inhibitor and nuclear anchor physical 1 1 1 Affinity Capture-RNA
ATG11 YPR049C Adapter protein for pexophagy and the Cvt targeting pathway physical 1 1 1 Affinity Capture-RNA
CYC8 YBR112C General transcriptional co-repressor physical 1 1 1 Affinity Capture-RNA
AXL1 YPR122W Haploid specific endoprotease of a-factor mating pheromone physical 1 1 1 Affinity Capture-RNA
DBF20 YPR111W Ser/Thr kinase involved in late nuclear division physical 1 1 1 Affinity Capture-RNA
HEF3 YNL014W Translational elongation factor EF-3 physical 1 1 1 Affinity Capture-RNA
CBK1 YNL161W Serine/threonine protein kinase of the the RAM signaling network physical 1 1 1 Affinity Capture-RNA
DSS1 YMR287C 3'-5' exoribonuclease physical 1 1 1 Affinity Capture-RNA
CDC20 YGL116W Activator of anaphase-promoting complex/cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
DOP1 YDR141C Protein involved in vesicular transport at trans-Golgi network (TGN) physical 1 1 1 Affinity Capture-RNA
DUG2 YBR281C Component of glutamine amidotransferase (GATase II) physical 1 1 1 Affinity Capture-RNA
GIP2 YER054C Putative regulatory subunit of protein phosphatase Glc7p physical 1 1 1 Affinity Capture-RNA
GDB1 YPR184W Glycogen debranching enzyme physical 1 1 1 Affinity Capture-RNA
COS111 YBR203W Protein required for antifungal drug ciclopirox olamine resistance physical 1 1 1 Affinity Capture-RNA
ELM1 YKL048C Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
HRT3 YLR097C Putative SCF-ubiquitin ligase F-box protein physical 1 1 1 Affinity Capture-RNA
GUF1 YLR289W Mitochondrial matrix GTPase physical 1 1 1 Affinity Capture-RNA
DAS1 YJL149W Putative SCF ubiquitin ligase F-box protein physical 1 1 1 Affinity Capture-RNA
GID8 YMR135C Subunit of GID Complex, binds strongly to central component Vid30p physical 1 1 1 Affinity Capture-RNA
FHL1 YPR104C Regulator of ribosomal protein (RP) transcription physical 1 1 1 Affinity Capture-RNA
ATG7 YHR171W Autophagy-related protein and dual specificity member of the E1 family physical 1 1 1 Affinity Capture-RNA
ETP1 YHL010C Protein of unknown function required for growth on ethanol physical 1 1 1 Affinity Capture-RNA
ART10 YLR392C Protein of unknown function that contains 2 PY motifs physical 1 1 1 Affinity Capture-RNA
BUL1 YMR275C Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex physical 1 1 1 Affinity Capture-RNA
HSL7 YBR133C Protein arginine N-methyltransferase physical 1 1 1 Affinity Capture-RNA
EST1 YLR233C TLC1 RNA-associated factor involved in telomere length regulation physical 1 1 1 Affinity Capture-RNA
HUL5 YGL141W Multiubiquitin chain assembly factor (E4) physical 1 1 1 Affinity Capture-RNA
CDC4 YFL009W F-box protein required for both the G1/S and G2/M phase transitions physical 1 1 1 Affinity Capture-RNA
AFR1 YDR085C Protein required for pheromone-induced projection (shmoo) formation physical 1 1 1 Affinity Capture-RNA
CTF13 YMR094W Subunit of the CBF3 complex physical 1 1 1 Affinity Capture-RNA
DNL4 YOR005C DNA ligase required for nonhomologous end-joining (NHEJ) physical 1 1 1 Affinity Capture-RNA
BEM3 YPL115C Rho GTPase activating protein (RhoGAP) physical 1 1 1 Affinity Capture-RNA
HIR1 YBL008W Subunit of the HIR complex physical 1 1 1 Affinity Capture-RNA
HYM1 YKL189W Component of the RAM signaling network physical 1 1 1 Affinity Capture-RNA
CDC15 YAR019C Hippo-like kinase of the Mitotic Exit Network physical 1 1 1 Affinity Capture-RNA
INA1 YLR413W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ARE1 YCR048W Acyl-CoA:sterol acyltransferase physical 1 1 1 Affinity Capture-RNA
GIS4 YML006C CAAX box containing protein of unknown function physical 1 1 1 Affinity Capture-RNA
CHS1 YNL192W Chitin synthase I physical 1 1 1 Affinity Capture-RNA
HIR2 YOR038C Subunit of HIR nucleosome assembly complex physical 1 1 1 Affinity Capture-RNA
AIP5 YFR016C Protein that positively regulates actin assembly physical 1 1 1 Affinity Capture-RNA
DIA2 YOR080W Origin-binding F-box protein physical 1 1 1 Affinity Capture-RNA
DIA2 YOR080W Origin-binding F-box protein genetic 1 1 1 Negative Genetic
CTF4 YPR135W Chromatin-associated protein physical 1 1 1 Affinity Capture-RNA
BUD7 YOR299W Member of the ChAPs family (Chs5p-Arf1p-binding proteins) physical 1 1 1 Affinity Capture-RNA
BEM4 YPL161C Protein involved in establishment of cell polarity and bud emergence physical 1 1 1 Affinity Capture-RNA
BCK2 YER167W Serine/threonine-rich protein involved in PKC1 signaling pathway physical 1 1 1 Affinity Capture-RNA
HOM3 YER052C Aspartate kinase (L-aspartate 4-P-transferase) physical 1 1 1 Affinity Capture-RNA
HAL5 YJL165C Snf1p-related nutrient-responsive protein kinase physical 1 1 1 Affinity Capture-RNA
FPK1 YNR047W Ser/Thr protein kinase physical 1 1 1 Affinity Capture-RNA
CIK1 YMR198W Kinesin-associated protein physical 1 1 1 Affinity Capture-RNA
BUD9 YGR041W Protein involved in bud-site selection physical 1 1 1 Affinity Capture-RNA
GAL3 YDR009W Transcriptional regulator physical 1 1 1 Affinity Capture-RNA
CLB2 YPR119W B-type cyclin involved in cell cycle progression physical 1 1 1 Affinity Capture-RNA
AHC1 YOR023C Subunit of the Ada histone acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
AIR1 YIL079C Zinc knuckle protein genetic 1 1 1 Synthetic Lethality
GSY1 YFR015C Glycogen synthase physical 1 1 1 Affinity Capture-RNA
FZO1 YBR179C Mitofusin, protein involved in mitochondrial outer membrane fusion physical 1 1 1 Affinity Capture-RNA
ELG1 YOR144C Subunit of an alternative replication factor C complex physical 1 1 1 Affinity Capture-RNA
HMG2 YLR450W HMG-CoA reductase physical 1 1 1 Affinity Capture-RNA
FKH2 YNL068C Forkhead family transcription factor physical 1 1 1 Affinity Capture-RNA
GTO1 YGR154C Omega-class glutathione transferase physical 1 1 1 Affinity Capture-RNA
BTN2 YGR142W v-SNARE binding protein physical 1 1 1 Affinity Capture-RNA
BUB3 YOR026W Kinetochore checkpoint WD40 repeat protein genetic 1 1 1 Negative Genetic
AVT2 YEL064C Putative transporter physical 1 1 1 Affinity Capture-RNA
DUF1 YOL087C Ubiquitin-binding protein of unknown function physical 1 1 1 Affinity Capture-RNA
CBP2 YHL038C Required for splicing of the group I intron bI5 of the COB pre-mRNA physical 1 1 1 Affinity Capture-RNA
CLN2 YPL256C G1 cyclin involved in regulation of the cell cycle physical 1 1 1 Affinity Capture-RNA
CSC1 YLR241W Calcium permeable gated cation channel physical 1 1 1 Affinity Capture-RNA
GCR2 YNL199C Transcriptional activator of genes involved in glycolysis physical 1 1 1 Affinity Capture-RNA
CKI1 YLR133W Choline kinase physical 1 1 1 Affinity Capture-RNA
ADE6 YGR061C Formylglycinamidine-ribonucleotide (FGAM)-synthetase physical 1 1 1 Affinity Capture-RNA
APE2 YKL157W Aminopeptidase yscII physical 1 1 1 Affinity Capture-RNA
CDH1 YGL003C Activator of anaphase-promoting complex/cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
HFL1 YKR051W Vacuole membrane protein that interacts with Atg8p physical 1 1 1 Affinity Capture-RNA
EXO70 YJL085W Subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
CNM1 YBR063C Molecular tether on nuclear membrane physical 1 1 1 Affinity Capture-RNA
BIR1 YJR089W Subunit of chromosomal passenger complex (CPC) genetic 1 1 1 Negative Genetic
GDH2 YDL215C NAD(+)-dependent glutamate dehydrogenase physical 1 1 1 Affinity Capture-RNA
APL4 YPR029C Gamma-adaptin physical 1 1 1 Affinity Capture-RNA
ASI3 YNL008C Subunit of the inner nuclear membrane Asi ubiquitin ligase complex physical 1 1 1 Affinity Capture-RNA
IME2 YJL106W Serine/threonine protein kinase involved in activation of meiosis physical 1 1 1 Affinity Capture-RNA
DCK1 YLR422W Dock family protein (Dedicator Of CytoKinesis), homolog of human DOCK1 physical 1 1 1 Affinity Capture-RNA
BIT2 YBR270C Subunit of TORC2 membrane-associated complex physical 1 1 1 Affinity Capture-RNA
HOF1 YMR032W F-BAR protein that regulates actin cytoskeleton organization physical 1 1 1 Affinity Capture-RNA
DSL1 YNL258C Peripheral membrane protein needed for Golgi-to-ER retrograde traffic physical 1 1 1 Affinity Capture-RNA
ALR1 YOL130W Plasma membrane Mg(2+) transporter physical 1 1 1 Affinity Capture-RNA
ATG1 YGL180W Protein serine/threonine kinase physical 1 1 1 Affinity Capture-RNA
ATG13 YPR185W Regulatory subunit of the Atg1p signaling complex physical 1 1 1 Affinity Capture-RNA
ARH1 YDR376W Oxidoreductase of the mitochondrial inner membrane physical 1 1 1 Affinity Capture-RNA
CDC43 YGL155W Beta subunit of geranylgeranyltransferase type I physical 1 1 1 Affinity Capture-RNA
CLN3 YAL040C G1 cyclin involved in cell cycle progression physical 1 1 1 Affinity Capture-RNA
CSM1 YCR086W Nucleolar protein that mediates homolog segregation during meiosis I genetic 1 1 1 Synthetic Growth Defect
EBS1 YDR206W Protein involved in translation inhibition and nonsense-mediated decay physical 1 1 1 Affinity Capture-RNA
FUI1 YBL042C High affinity uridine permease, localizes to the plasma membrane physical 1 1 1 Affinity Capture-RNA
ARG81 YML099C Zinc finger transcription factor involved in arginine-responsive genes physical 1 1 1 Affinity Capture-RNA
GZF3 YJL110C GATA zinc finger protein physical 1 1 1 Affinity Capture-RNA
GDS1 YOR355W Protein involved in histone H4 acetylation at ribosomal protein genes physical 1 1 1 Affinity Capture-RNA
HST3 YOR025W Sirtuin, histone H3 deacetylase physical 1 1 1 Affinity Capture-RNA
HST3 YOR025W Sirtuin, histone H3 deacetylase genetic 1 1 1 Negative Genetic
IRE1 YHR079C Serine-threonine kinase and endoribonuclease physical 1 1 1 Affinity Capture-RNA
ISC10 YER180C Meiosis-specific MAPK inhibitor physical 1 1 1 Affinity Capture-RNA
BSC5 YNR069C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
HAA1 YPR008W Transcriptional activator involved in adaptation to weak acid stress physical 1 1 1 Affinity Capture-RNA
CLG1 YGL215W Cyclin-like protein that interacts with Pho85p physical 1 1 1 Affinity Capture-RNA
IKS1 YJL057C Protein kinase of unknown cellular role physical 1 1 1 Affinity Capture-RNA
ACA1 YER045C ATF/CREB family basic leucine zipper (bZIP) transcription factor physical 1 1 1 Affinity Capture-RNA
AIM3 YBR108W Protein that inhibits barbed-end actin filament elongation physical 1 1 1 Affinity Capture-RNA
BAS1 YKR099W Myb-related transcription factor physical 1 1 1 Affinity Capture-RNA
ADP1 YCR011C Putative ATP-dependent permease of the ABC transporter family physical 1 1 1 Affinity Capture-RNA
ERC1 YHR032W Member of the multi-drug and toxin extrusion (MATE) family physical 1 1 1 Affinity Capture-RNA
IMA3 YIL172C Alpha-glucosidase physical 1 1 1 Affinity Capture-RNA
CHA4 YLR098C DNA binding transcriptional activator physical 1 1 1 Affinity Capture-RNA
ADY3 YDL239C Protein required for spore wall formation physical 1 1 1 Affinity Capture-RNA
AKR2 YOR034C Ankyrin repeat-containing protein physical 1 1 1 Affinity Capture-RNA
ESL1 YIL151C hEST1A/B (SMG5/6)-like protein physical 1 1 1 Affinity Capture-RNA
ASK10 YGR097W Regulator of the Fps1p glycerol channel physical 1 1 1 Affinity Capture-RNA
FMP40 YPL222W Mitochondrial AMPylator in the pseudokinase selenoprotein-O family physical 1 1 1 Affinity Capture-RNA
COG4 YPR105C Essential component of the conserved oligomeric Golgi complex physical 1 1 1 Affinity Capture-RNA
APC5 YOR249C Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
APC4 YDR118W Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
CDC27 YBL084C Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
CDC27 YBL084C Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) genetic 1 1 1 Negative Genetic
CEP3 YMR168C Essential kinetochore protein physical 1 1 1 Affinity Capture-RNA
COG7 YGL005C Component of the conserved oligomeric Golgi complex physical 1 1 1 Affinity Capture-RNA
COG6 YNL041C Component of the conserved oligomeric Golgi complex physical 1 1 1 Affinity Capture-RNA
ELP3 YPL086C Subunit of Elongator complex genetic 1 1 1 Negative Genetic
GIP3 YPL137C Cytoplasmic protein that regulates protein phosphatase 1 Glc7p physical 1 1 1 Affinity Capture-RNA
IPL1 YPL209C Aurora kinase of chromosomal passenger complex genetic 1 1 1 Negative Genetic
DOC1 YGL240W Processivity factor physical 1 1 1 Affinity Capture-RNA
CHL1 YPL008W Probable DNA helicase physical 1 1 1 Affinity Capture-RNA
GRC3 YLL035W Polynucleotide kinase present on rDNA physical 1 1 1 Affinity Capture-RNA
CST6 YIL036W Basic leucine zipper (bZIP) transcription factor from ATF/CREB family physical 1 1 1 Affinity Capture-RNA
AMD1 YML035C AMP deaminase physical 1 1 1 Affinity Capture-RNA
BRE5 YNR051C Ubiquitin protease cofactor genetic 1 1 1 Positive Genetic
GCR1 YPL075W Transcriptional activator of genes involved in glycolysis physical 1 1 1 Affinity Capture-RNA
HOS3 YPL116W Trichostatin A-insensitive homodimeric histone deacetylase (HDAC) physical 1 1 1 Affinity Capture-RNA
HPC2 YBR215W Subunit of the HIR complex genetic 1 1 1 Negative Genetic
CBF1 YJR060W Basic helix-loop-helix (bHLH) protein physical 1 1 1 Affinity Capture-Western
CBF1 YJR060W Basic helix-loop-helix (bHLH) protein genetic 1 1 1 Negative Genetic
AMA1 YGR225W Activator of meiotic anaphase promoting complex (APC/C) physical 1 1 1 Affinity Capture-RNA
BRN1 YBL097W Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
BUB1 YGR188C Protein kinase involved in the cell cycle checkpoint into anaphase genetic 1 1 1 Negative Genetic
BUD4 YJR092W Anillin-like protein involved in bud-site selection physical 1 1 1 Affinity Capture-RNA
EXO1 YOR033C 5'-3' exonuclease and flap-endonuclease physical 1 1 1 Affinity Capture-RNA
GIM4 YEL003W Subunit of the heterohexameric cochaperone prefoldin complex genetic 1 1 1 Negative Genetic
GEA1 YJR031C Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs) physical 1 1 1 Affinity Capture-RNA
HOS1 YPR068C Class I histone deacetylase (HDAC) family member physical 1 1 1 Affinity Capture-RNA
BIK1 YCL029C Microtubule-associated protein physical 1 1 1 Affinity Capture-RNA
CBF2 YGR140W Essential kinetochore protein physical 1 1 1 Affinity Capture-RNA
BET1 YIL004C Type II membrane protein required for vesicular transport genetic 1 1 1 Negative Genetic
FIG4 YNL325C Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase physical 1 1 1 Affinity Capture-RNA
CCZ1 YBR131W Subunit of a heterodimeric guanine nucleotide exchange factor (GEF) physical 1 1 1 Affinity Capture-RNA
CST9 YLR394W SUMO E3 ligase physical 1 1 1 Affinity Capture-RNA
ATG2 YNL242W Peripheral membrane protein required for autophagic vesicle formation physical 1 1 1 Affinity Capture-RNA
BBP1 YPL255W Protein required for the spindle pole body (SPB) duplication physical 1 1 1 Affinity Capture-RNA
CIN1 YOR349W Tubulin folding factor D involved in beta-tubulin (Tub2p) folding physical 1 1 1 Affinity Capture-RNA
HAP1 YLR256W Zinc finger transcription factor physical 1 1 1 Affinity Capture-RNA
GAL4 YPL248C DNA-binding transcription factor required for activating GAL genes physical 1 1 1 Affinity Capture-RNA
BUD8 YLR353W Protein involved in bud-site selection physical 1 1 1 Affinity Capture-RNA
FUS2 YMR232W Cell fusion regulator physical 1 1 1 Affinity Capture-RNA
GLN3 YER040W Transcriptional activator in nitrogen catabolite repression system physical 1 1 1 Affinity Capture-RNA
GAP1 YKR039W General amino acid permease physical 1 1 1 Affinity Capture-RNA
HIP1 YGR191W High-affinity histidine permease physical 1 1 1 Affinity Capture-RNA
BUD2 YKL092C GTPase activating factor for Rsr1p/Bud1p physical 1 1 1 Affinity Capture-RNA
GYP1 YOR070C Cis-golgi GTPase-activating protein (GAP) for yeast Rabs physical 1 1 1 Affinity Capture-RNA
GAL80 YML051W Transcriptional regulator involved in the repression of GAL genes physical 1 1 1 Affinity Capture-RNA
ABF1 YKL112W DNA binding protein with possible chromatin-reorganizing activity physical 1 1 1 Affinity Capture-RNA
BNR1 YIL159W Formin physical 1 1 1 Affinity Capture-RNA
FCP1 YMR277W Carboxy-terminal domain (CTD) phosphatase physical 1 1 1 Affinity Capture-RNA
FCP1 YMR277W Carboxy-terminal domain (CTD) phosphatase genetic 1 1 1 Negative Genetic
BUD6 YLR319C Actin- and formin-interacting protein physical 1 1 1 Affinity Capture-RNA
CHS3 YBR023C Chitin synthase III physical 1 1 1 Affinity Capture-RNA
AFI1 YOR129C Arf3p polarization-specific docking factor physical 1 1 1 Affinity Capture-RNA
ESC1 YMR219W Protein involved in telomeric silencing physical 1 1 1 Affinity Capture-RNA
ESC2 YDR363W Sumo-like domain protein physical 1 1 1 Affinity Capture-RNA
ESC2 YDR363W Sumo-like domain protein genetic 1 1 1 Negative Genetic
GAL1 YBR020W Galactokinase physical 1 1 1 Affinity Capture-RNA
GPB2 YAL056W Multistep regulator of cAMP-PKA signaling physical 1 1 1 Affinity Capture-RNA
GSY2 YLR258W Glycogen synthase physical 1 1 1 Affinity Capture-RNA
AKR1 YDR264C Palmitoyl transferase involved in protein palmitoylation physical 1 1 1 Affinity Capture-RNA
INP53 YOR109W Polyphosphatidylinositol phosphatase physical 1 1 1 Affinity Capture-RNA
GAD1 YMR250W Glutamate decarboxylase physical 1 1 1 Affinity Capture-RNA
DBP1 YPL119C ATP-dependent RNA helicase of the DEAD-box protein family physical 1 1 1 Affinity Capture-RNA
BCH1 YMR237W Member of the ChAPs family (Chs5p-Arf1p-binding proteins) physical 1 1 1 Affinity Capture-RNA
FBP26 YJL155C Fructose-2,6-bisphosphatase, required for glucose metabolism physical 1 1 1 Affinity Capture-RNA
DSE1 YER124C Daughter cell-specific protein physical 1 1 1 Affinity Capture-RNA
DSE1 YER124C Daughter cell-specific protein genetic 1 1 1 Phenotypic Suppression
HFM1 YGL251C Meiosis specific DNA helicase physical 1 1 1 Affinity Capture-RNA
AAD3 YCR107W Putative aryl-alcohol dehydrogenase physical 1 1 1 Affinity Capture-RNA
COQ1 YBR003W Hexaprenyl pyrophosphate synthetase physical 1 1 1 Affinity Capture-RNA
ALY1 YKR021W Alpha arrestin, substrate of calcineurin physical 1 1 1 Affinity Capture-RNA
BPT1 YLL015W ABC type transmembrane transporter of MRP/CFTR family physical 1 1 1 Affinity Capture-RNA
ECM27 YJR106W Protein involved in calcium homeostasis and exit from quiescence physical 1 1 1 Affinity Capture-RNA
GPR1 YDL035C Plasma membrane G protein coupled receptor (GPCR) physical 1 1 1 Affinity Capture-RNA
GPR1 YDL035C Plasma membrane G protein coupled receptor (GPCR) genetic 1 1 1 Negative Genetic
CMR2 YOR093C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
ARK1 YNL020C Ser/Thr protein kinase physical 1 1 1 Affinity Capture-RNA
AZF1 YOR113W Zinc-finger transcription factor physical 1 1 1 Affinity Capture-RNA
CLA4 YNL298W Cdc42p-activated signal transducing kinase physical 1 1 1 Affinity Capture-RNA
ACF2 YLR144C Intracellular beta-1,3-endoglucanase physical 1 1 1 Affinity Capture-RNA
ENT2 YLR206W Epsin-like protein required for endocytosis and actin patch assembly physical 1 1 1 Affinity Capture-RNA
CCH1 YGR217W Voltage-gated high-affinity calcium channel physical 1 1 1 Affinity Capture-RNA
CQD1 YPL109C UbiB family mitochondrial protein physical 1 1 1 Affinity Capture-RNA
HO YDL227C Site-specific endonuclease physical 1 1 1 Affinity Capture-RNA
HHT2 YNL031C Histone H3 physical 1 1 1 Affinity Capture-Western
HHT2 YNL031C Histone H3 genetic 1 1 1 Synthetic Growth Defect
ASH1 YKL185W Component of the Rpd3L histone deacetylase complex physical 1 1 1 Affinity Capture-RNA
HPA2 YPR193C Tetrameric histone acetyltransferase physical 1 1 1 Affinity Capture-RNA
AUR1 YKL004W Phosphatidylinositol:ceramide phosphoinositol transferase physical 1 1 1 Affinity Capture-RNA
HRD1 YOL013C Ubiquitin-protein ligase involved in ER-associated degradation (ERAD) physical 1 1 1 Affinity Capture-RNA
HSV2 YGR223C Phosphatidylinositol 3,5-bisphosphate-binding protein physical 1 1 1 Affinity Capture-RNA
EIS1 YMR031C Component of the eisosome required for proper eisosome assembly physical 1 1 1 Affinity Capture-RNA
ENV11 YGR071C Protein proposed to be involved in vacuolar functions physical 1 1 1 Affinity Capture-RNA
GSM1 YJL103C Putative zinc cluster protein of unknown function physical 1 1 1 Affinity Capture-RNA
HBT1 YDL223C Shmoo tip protein, substrate of Hub1p ubiquitin-like protein physical 1 1 1 Affinity Capture-RNA
DBP6 YNR038W Essential protein involved in ribosome biogenesis physical 1 1 1 Affinity Capture-RNA
CBP1 YJL209W Mitochondrial protein, regulator of COB mRNA stability and translation physical 1 1 1 Affinity Capture-RNA
INP51 YIL002C Phosphatidylinositol 4,5-bisphosphate 5-phosphatase physical 1 1 1 Affinity Capture-RNA
AQR1 YNL065W Plasma membrane transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
FLO8 YER109C Transcription factor physical 1 1 1 Affinity Capture-RNA
ASG1 YIL130W Zinc cluster protein proposed to be a transcriptional regulator physical 1 1 1 Affinity Capture-RNA
ABZ1 YNR033W Para-aminobenzoate (PABA) synthase physical 1 1 1 Affinity Capture-RNA
GAB1 YLR459W Subunit of the glycosylphosphatidylinositol transamidase complex physical 1 1 1 Affinity Capture-RNA
CRR1 YLR213C Putative glycoside hydrolase of the spore wall envelope physical 1 1 1 Affinity Capture-RNA
ECM21 YBL101C Alpha-arrestin, ubiquitin ligase adaptor for Rsp5p physical 1 1 1 Affinity Capture-RNA
ARO80 YDR421W Zinc finger transcriptional activator of the Zn2Cys6 family physical 1 1 1 Affinity Capture-RNA
AUS1 YOR011W Plasma membrane sterol transporter of the ATP-binding cassette family physical 1 1 1 Affinity Capture-RNA
GTA1 YEL043W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
GPB1 YOR371C Multistep regulator of cAMP-PKA signaling physical 1 1 1 Affinity Capture-RNA
HMG1 YML075C HMG-CoA reductase physical 1 1 1 Affinity Capture-RNA
ATP18 YML081C-A Subunit of the mitochondrial F1F0 ATP synthase genetic 1 1 1 Negative Genetic
APM2 YHL019C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
HCM1 YCR065W Forkhead transcription factor physical 1 1 1 Affinity Capture-RNA
EXG2 YDR261C Exo-1,3-beta-glucanase physical 1 1 1 Affinity Capture-RNA
EMP70 YLR083C Protein with a role in cellular adhesion and filamentous growth physical 1 1 1 Affinity Capture-RNA
ATF1 YOR377W Alcohol acetyltransferase physical 1 1 1 Affinity Capture-RNA
ARR3 YPR201W Plasma membrane metalloid/H+ antiporter physical 1 1 1 Affinity Capture-RNA
HLR1 YDR528W Protein involved in regulation of cell wall composition and integrity physical 1 1 1 Affinity Capture-RNA
GEF1 YJR040W Voltage-gated chloride channel physical 1 1 1 Affinity Capture-RNA
FRA1 YLL029W Protein involved in negative regulation of iron regulon transcription physical 1 1 1 Affinity Capture-RNA
CSF1 YLR087C Protein with structural similarity to lipid transport protein Vps13p genetic 1 1 1 Positive Genetic
GEX1 YCL073C Proton:glutathione antiporter physical 1 1 1 Affinity Capture-RNA
EGT2 YNL327W Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase physical 1 1 1 Affinity Capture-RNA
BCH2 YKR027W Member of the ChAPs (Chs5p-Arf1p-binding proteins) family physical 1 1 1 Affinity Capture-RNA
IFH1 YLR223C Coactivator, regulates transcription of ribosomal protein (RP) genes physical 1 1 1 Affinity Capture-RNA
GTB1 YDR221W Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p physical 1 1 1 Affinity Capture-RNA
CAN1 YEL063C Plasma membrane arginine permease physical 1 1 1 Affinity Capture-RNA
FUR4 YBR021W Plasma membrane localized uracil permease physical 1 1 1 Affinity Capture-RNA
HUL4 YJR036C Protein with similarity to hect domain E3 ubiquitin-protein ligases physical 1 1 1 Affinity Capture-RNA
AGP2 YBR132C Plasma membrane regulator of polyamine and carnitine transport physical 1 1 1 Affinity Capture-RNA
BAP3 YDR046C Amino acid permease physical 1 1 1 Affinity Capture-RNA
DAL5 YJR152W Allantoate permease physical 1 1 1 Affinity Capture-RNA
ESBP6 YNL125C Protein with similarity to monocarboxylate permeases physical 1 1 1 Affinity Capture-RNA
ERG7 YHR072W Lanosterol synthase physical 1 1 1 Affinity Capture-RNA
HRD3 YLR207W ER membrane protein that plays a central role in ERAD physical 1 1 1 Affinity Capture-RNA
HSP12 YFL014W Plasma membrane protein involved in maintaining membrane organization genetic 1 1 1 Negative Genetic
FRE3 YOR381W Ferric reductase physical 1 1 1 Affinity Capture-RNA
HRQ1 YDR291W 3'-5' DNA helicase of the conserved RecQ family physical 1 1 1 Affinity Capture-RNA
HRQ1 YDR291W 3'-5' DNA helicase of the conserved RecQ family genetic 1 1 1 Negative Genetic
BPL1 YDL141W Biotin:apoprotein ligase physical 1 1 1 Affinity Capture-RNA
DSE4 YNR067C Daughter cell-specific secreted protein with similarity to glucanases physical 1 1 1 Affinity Capture-RNA
BUL2 YML111W Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex physical 1 1 1 Affinity Capture-RNA
ICL1 YER065C Isocitrate lyase physical 1 1 1 Affinity Capture-RNA
GID11 YLR149C Substrate receptor of the glucose-induced degradation-deficient (GID) physical 1 1 1 Affinity Capture-RNA
AIM22 YJL046W Lipoate-protein ligase physical 1 1 1 Affinity Capture-RNA
AEP3 YPL005W Peripheral mitochondrial inner membrane protein physical 1 1 1 Affinity Capture-RNA
AHK1 YDL073W Scaffold protein in the HKR1 sub-branch of the Hog1p-signaling pathway physical 1 1 1 Affinity Capture-RNA
GLG1 YKR058W Glycogenin glucosyltransferase physical 1 1 1 Affinity Capture-RNA
CUE3 YGL110C Subunit of ribosome-associated quality control trigger complex (RQT) physical 1 1 1 Affinity Capture-RNA
ATG32 YIL146C Mitochondrial outer membrane protein required to initiate mitophagy physical 1 1 1 Affinity Capture-RNA
IPF1 YDL176W Protein of unknown function involved in actin patch formation physical 1 1 1 Affinity Capture-RNA
CUL3 YGR003W Ubiquitin-protein ligase physical 1 1 1 Affinity Capture-RNA
IRC3 YDR332W Double-stranded DNA-dependent helicase of the DExH/D-box family physical 1 1 1 Affinity Capture-RNA
CAB4 YGR277C Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC) genetic 1 1 1 Negative Genetic
GUT1 YHL032C Glycerol kinase physical 1 1 1 Affinity Capture-RNA
BAR1 YIL015W Aspartyl protease secreted to periplasmic space of mating type a cell physical 1 1 1 Affinity Capture-RNA
IRC8 YJL051W Bud tip localized protein of unknown function physical 1 1 1 Affinity Capture-RNA
BYE1 YKL005C Negative regulator of transcription elongation physical 1 1 1 Affinity Capture-RNA
ANR2 YKL047W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
AQY3 YFL054C Putative channel-like protein physical 1 1 1 Affinity Capture-RNA
CYK3 YDL117W SH3-domain protein located in the bud neck and cytokinetic actin ring physical 1 1 1 Affinity Capture-RNA
CYK3 YDL117W SH3-domain protein located in the bud neck and cytokinetic actin ring genetic 1 1 1 Negative Genetic
AIM26 YKL037W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ECM3 YOR092W Non-essential protein of unknown function physical 1 1 1 Affinity Capture-RNA
ANY1 YMR010W Protein involved in phospholipid flippase function physical 1 1 1 Affinity Capture-RNA
FLO11 YIR019C GPI-anchored cell surface glycoprotein (flocculin) physical 1 1 1 Affinity Capture-RNA
DIN7 YDR263C Mitochondrial nuclease functioning in DNA repair and replication physical 1 1 1 Affinity Capture-RNA
ADE12 YNL220W Adenylosuccinate synthase genetic 1 1 1 Negative Genetic
FOL1 YNL256W Multifunctional enzyme of the folic acid biosynthesis pathway physical 1 1 1 Affinity Capture-RNA
GIP4 YAL031C Cytoplasmic protein that regulates protein phosphatase 1 Glc7p physical 1 1 1 Affinity Capture-RNA
DNF1 YER166W Aminophospholipid translocase (flippase) physical 1 1 1 Affinity Capture-RNA
CSS1 YIL169C Protein of unknown function, secreted when constitutively expressed physical 1 1 1 Affinity Capture-RNA
ISM1 YPL040C Mitochondrial isoleucyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
FAS1 YKL182W Beta subunit of fatty acid synthetase physical 1 1 1 Affinity Capture-RNA
GYP7 YDL234C GTPase-activating protein for yeast Rab family members physical 1 1 1 Affinity Capture-RNA
ATF2 YGR177C Alcohol acetyltransferase physical 1 1 1 Affinity Capture-RNA
EGH1 YIR007W Steryl-beta-glucosidase with broad specificity for aglycones physical 1 1 1 Affinity Capture-RNA
ALT1 YLR089C Alanine transaminase (glutamic pyruvic transaminase) physical 1 1 1 Affinity Capture-RNA
ERP3 YDL018C Protein with similarity to Emp24p and Erv25p physical 1 1 1 Two-hybrid
GEM1 YAL048C Outer mitochondrial membrane GTPase, subunit of the ERMES complex physical 1 1 1 Affinity Capture-RNA
GSH1 YJL101C Gamma glutamylcysteine synthetase physical 1 1 1 Affinity Capture-RNA
GPI17 YDR434W Transmembrane protein physical 1 1 1 Affinity Capture-RNA
IPT1 YDR072C Inositolphosphotransferase physical 1 1 1 Affinity Capture-RNA
BST1 YFL025C GPI inositol deacylase of the endoplasmic reticulum (ER) physical 1 1 1 Affinity Capture-RNA
HEM1 YDR232W 5-aminolevulinate synthase physical 1 1 1 Affinity Capture-RNA
AVT3 YKL146W Vacuolar transporter physical 1 1 1 Affinity Capture-RNA
CMR3 YPR013C Putative zinc finger protein physical 1 1 1 Affinity Capture-RNA
ARN2 YHL047C Transporter physical 1 1 1 Affinity Capture-RNA
FPS1 YLL043W Aquaglyceroporin, plasma membrane channel physical 1 1 1 Affinity Capture-RNA
IRC5 YFR038W Putative ATPase containing the DEAD/H helicase-related sequence motif physical 1 1 1 Affinity Capture-RNA
EUG1 YDR518W Protein disulfide isomerase of the endoplasmic reticulum lumen physical 1 1 1 Affinity Capture-RNA
EMA35 YCR100C Protein involved in protein sorting physical 1 1 1 Affinity Capture-RNA
FRE8 YLR047C Protein with sequence similarity to iron/copper reductases physical 1 1 1 Affinity Capture-RNA
ENT4 YLL038C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ICS2 YBR157C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
DGR2 YKL121W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ECM22 YLR228C Sterol regulatory element binding protein physical 1 1 1 Affinity Capture-RNA
AGE1 YDR524C ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector physical 1 1 1 Affinity Capture-RNA
DAP2 YHR028C Dipeptidyl aminopeptidase physical 1 1 1 Affinity Capture-RNA
ECM7 YLR443W Putative integral membrane protein with a role in calcium uptake physical 1 1 1 Affinity Capture-RNA
ALG6 YOR002W ER-luminal alpha 1,3 glucosyltransferase physical 1 1 1 Affinity Capture-RNA
AAD4 YDL243C Putative aryl-alcohol dehydrogenase physical 1 1 1 Affinity Capture-RNA
CWH43 YCR017C GPI lipid remodelase physical 1 1 1 Affinity Capture-RNA
COX10 YPL172C Heme A:farnesyltransferase physical 1 1 1 Affinity Capture-RNA
GSC2 YGR032W Catalytic subunit of 1,3-beta-glucan synthase physical 1 1 1 Affinity Capture-RNA
ATR1 YML116W Multidrug efflux pump of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
DNF2 YDR093W Aminophospholipid translocase (flippase) physical 1 1 1 Affinity Capture-RNA
DCR2 YLR361C Protein phosphatase physical 1 1 1 Affinity Capture-RNA
GUT2 YIL155C Mitochondrial glycerol-3-phosphate dehydrogenase physical 1 1 1 Affinity Capture-RNA
EST2 YLR318W Reverse transcriptase subunit of the telomerase holoenzyme physical 1 1 1 Affinity Capture-RNA
ASI1 YMR119W Subunit of the inner nuclear membrane Asi ubiquitin ligase complex physical 1 1 1 Affinity Capture-RNA
FMP45 YDL222C Integral membrane protein localized to mitochondria physical 1 1 1 Affinity Capture-RNA
GUD1 YDL238C Guanine deaminase physical 1 1 1 Affinity Capture-RNA
CTA1 YDR256C Catalase A physical 1 1 1 Affinity Capture-RNA
ECL1 YGR146C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
AAD14 YNL331C Putative aryl-alcohol dehydrogenase physical 1 1 1 Affinity Capture-RNA
EAR1 YMR171C Specificity factor required for Rsp5p-dependent ubiquitination physical 1 1 1 Affinity Capture-RNA
EAR1 YMR171C Specificity factor required for Rsp5p-dependent ubiquitination genetic 1 1 1 Negative Genetic
FRE1 YLR214W Ferric reductase and cupric reductase physical 1 1 1 Affinity Capture-RNA
HXT4 YHR092C High-affinity glucose transporter physical 1 1 1 Affinity Capture-RNA
ENA1 YDR040C P-type ATPase sodium pump physical 1 1 1 Affinity Capture-RNA
ENA2 YDR039C P-type ATPase sodium pump physical 1 1 1 Affinity Capture-RNA
ENA5 YDR038C Protein with similarity to P-type ATPase sodium pumps physical 1 1 1 Affinity Capture-RNA
DFG16 YOR030W Probable multiple transmembrane protein physical 1 1 1 Affinity Capture-RNA
BAP2 YBR068C High-affinity leucine permease physical 1 1 1 Affinity Capture-RNA
FLC1 YPL221W Flavin adenine dinucleotide transporter physical 1 1 1 Affinity Capture-RNA
DUR3 YHL016C Plasma membrane transporter for both urea and polyamines physical 1 1 1 Affinity Capture-RNA
BSC1 YDL037C Protein of unconfirmed function physical 1 1 1 Affinity Capture-RNA
FMP25 YLR077W Protein required for assembly of respiratory complex III physical 1 1 1 Affinity Capture-RNA
INO1 YJL153C Inositol-3-phosphate synthase physical 1 1 1 Affinity Capture-RNA
COS12 YGL263W Endosomal protein involved in turnover of plasma membrane proteins physical 1 1 1 Affinity Capture-RNA
CHO2 YGR157W Phosphatidylethanolamine methyltransferase (PEMT) physical 1 1 1 Affinity Capture-RNA
EFR3 YMR212C Protein required for Stt4-containing PI kinase complex localization physical 1 1 1 Affinity Capture-RNA
GPI13 YLL031C ER membrane localized phosphoryltransferase physical 1 1 1 Affinity Capture-RNA
CTT1 YGR088W Cytosolic catalase T physical 1 1 1 Affinity Capture-RNA
ATG15 YCR068W Phospholipase physical 1 1 1 Affinity Capture-RNA
FRT1 YOR324C Tail-anchored ER membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
AMD2 YDR242W Putative amidase physical 1 1 1 Affinity Capture-RNA
GPC1 YGR149W Glycerophosphocholine acyltransferase (GPCAT) physical 1 1 1 Affinity Capture-RNA
AVL9 YLR114C Conserved protein involved in exocytic transport from the Golgi physical 1 1 1 Affinity Capture-RNA
COS10 YNR075W Endosomal protein involved in turnover of plasma membrane proteins physical 1 1 1 Affinity Capture-RNA
HAL9 YOL089C Putative transcription factor containing a zinc finger physical 1 1 1 Affinity Capture-RNA
CUR1 YPR158W Sorting factor, central regulator of spatial protein quality control physical 1 1 1 Affinity Capture-RNA
DSE2 YHR143W Daughter cell-specific secreted protein with similarity to glucanases physical 1 1 1 Affinity Capture-RNA
CSI2 YOL007C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
CTS1 YLR286C Endochitinase physical 1 1 1 Affinity Capture-RNA
FLO1 YAR050W Lectin-like protein involved in flocculation physical 1 1 1 Affinity Capture-RNA
FRE5 YOR384W Putative ferric reductase with similarity to Fre2p physical 1 1 1 Affinity Capture-RNA
FIT3 YOR383C Mannoprotein that is incorporated into the cell wall physical 1 1 1 Affinity Capture-RNA
FLO9 YAL063C Lectin-like protein with similarity to Flo1p physical 1 1 1 Affinity Capture-RNA
DDL1 YOR022C DDHD domain-containing phospholipase A1 physical 1 1 1 Affinity Capture-RNA
EDS1 YBR033W Putative zinc cluster protein, predicted to be a transcription factor physical 1 1 1 Affinity Capture-RNA
DIT1 YDR403W Sporulation-specific enzyme required for spore wall maturation physical 1 1 1 Affinity Capture-RNA
FLC3 YGL139W Putative FAD transporter, similar to Flc1p and Flc2p physical 1 1 1 Affinity Capture-RNA
FIT1 YDR534C Mannoprotein that is incorporated into the cell wall physical 1 1 1 Affinity Capture-RNA
FEX1 YOR390W Protein involved in fluoride export physical 1 1 1 Affinity Capture-RNA
FRE6 YLL051C Putative ferric reductase with similarity to Fre2p physical 1 1 1 Affinity Capture-RNA
FEX2 YPL279C Protein involved in fluoride export physical 1 1 1 Affinity Capture-RNA
BRE4 YDL231C Zinc finger protein containing five transmembrane domains physical 1 1 1 Affinity Capture-RNA
FKS3 YMR306W Protein involved in spore wall assembly physical 1 1 1 Affinity Capture-RNA
ALK1 YGL021W Atypical protein kinase physical 1 1 1 Affinity Capture-RNA
HAL1 YPR005C Cytoplasmic protein involved in halotolerance physical 1 1 1 Affinity Capture-RNA
AIM14 YGL160W NADPH oxidase localized to the perinuclear ER physical 1 1 1 Affinity Capture-RNA
AAD15 YOL165C Putative aryl-alcohol dehydrogenase physical 1 1 1 Affinity Capture-RNA
DLD1 YDL174C Major mitochondrial D-lactate dehydrogenase physical 1 1 1 Affinity Capture-RNA
CRT10 YOL063C Protein required for the degradation of mutant 25S rRNAs physical 1 1 1 Affinity Capture-RNA
IML2 YJL082W Protein required for clearance of inclusion bodies physical 1 1 1 Affinity Capture-RNA
ATH1 YPR026W Acid trehalase required for utilization of extracellular trehalose physical 1 1 1 Affinity Capture-RNA
ARN1 YHL040C ARN family transporter for siderophore-iron chelates physical 1 1 1 Affinity Capture-RNA
DNF3 YMR162C Trans-golgi network aminophospholipid translocase (flippase) physical 1 1 1 Affinity Capture-RNA
GRS2 YPR081C Glycine-tRNA synthetase, not expressed under normal growth conditions physical 1 1 1 Affinity Capture-RNA
ERD1 YDR414C Predicted membrane protein required for lumenal ER protein retention physical 1 1 1 Affinity Capture-RNA
CCC2 YDR270W Cu(+2)-transporting P-type ATPase physical 1 1 1 Affinity Capture-RNA
GLC3 YEL011W Glycogen branching enzyme, involved in glycogen accumulation physical 1 1 1 Affinity Capture-RNA
AAD10 YJR155W Putative aryl-alcohol dehydrogenase physical 1 1 1 Affinity Capture-RNA
HPF1 YOL155C Haze-protective mannoprotein physical 1 1 1 Affinity Capture-RNA
AGC1 YPR021C Mitochondrial amino acid transporter physical 1 1 1 Affinity Capture-RNA
HEL1 YKR017C RING finger ubiquitin ligase (E3) physical 1 1 1 Affinity Capture-RNA
IRC20 YLR247C E3 ubiquitin ligase and putative helicase physical 1 1 1 Affinity Capture-RNA
FRE4 YNR060W Ferric reductase physical 1 1 1 Affinity Capture-RNA
IMA2 YOL157C Isomaltase (alpha-1,6-glucosidase/alpha-methylglucosidase) physical 1 1 1 Affinity Capture-RNA
ECM18 YDR125C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ALE1 YOR175C Broad-specificity lysophospholipid acyltransferase physical 1 1 1 Affinity Capture-RNA
CQD2 YLR253W Mitochondrial protein involved in lipid homeostasis physical 1 1 1 Affinity Capture-RNA
ALD3 YMR169C Cytoplasmic aldehyde dehydrogenase physical 1 1 1 Affinity Capture-RNA
AVT7 YIL088C Vacuolar amino acid transporter physical 1 1 1 Affinity Capture-RNA
IRC15 YPL017C Microtubule associated protein physical 1 1 1 Affinity Capture-RNA
ENB1 YOL158C Ferric enterobactin transmembrane transporter physical 1 1 1 Affinity Capture-RNA
AGP1 YCL025C Broad-specificity, low-affinity amino acid permease physical 1 1 1 Affinity Capture-RNA
ALG11 YNL048W Alpha-1,2-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
GMC1 YDR506C Protein involved in meiotic progression physical 1 1 1 Affinity Capture-RNA
FRE2 YKL220C Ferric reductase and cupric reductase physical 1 1 1 Affinity Capture-RNA
FEN2 YCR028C Plasma membrane H+-pantothenate symporter physical 1 1 1 Affinity Capture-RNA
GPI1 YGR216C Membrane protein involved in the synthesis of GlcNAc-PI physical 1 1 1 Affinity Capture-RNA
CIN10 YDR387C Putative transporter physical 1 1 1 Affinity Capture-RNA
HXT17 YNR072W Putative transmembrane polyol transporter physical 1 1 1 Affinity Capture-RNA
HXT17 YNR072W Putative transmembrane polyol transporter genetic 1 1 1 Negative Genetic
GAS4 YOL132W 1,3-beta-glucanosyltransferase physical 1 1 1 Affinity Capture-RNA
ALK2 YBL009W Atypical protein kinase physical 1 1 1 Affinity Capture-RNA
EFM3 YJR129C S-adenosylmethionine-dependent methyltransferase physical 1 1 1 Affinity Capture-RNA
IMA1 YGR287C Major isomaltase (alpha-1,6-glucosidase/alpha-methylglucosidase) physical 1 1 1 Affinity Capture-RNA
CTS2 YDR371W Putative chitinase physical 1 1 1 Affinity Capture-RNA
ECM32 YER176W DNA dependent ATPase/DNA helicase physical 1 1 1 Affinity Capture-RNA
EXO5 YBR163W Mitochondrial 5'-3' exonuclease and sliding exonuclease physical 1 1 1 Affinity Capture-RNA
HMS2 YJR147W Protein with similarity to heat shock transcription factors physical 1 1 1 Affinity Capture-RNA
EMP65 YER140W Integral membrane protein of the ER physical 1 1 1 Affinity Capture-RNA
ECM38 YLR299W Gamma-glutamyltranspeptidase physical 1 1 1 Affinity Capture-RNA
FLR1 YBR008C Plasma membrane transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
ICE2 YIL090W Integral ER membrane protein with type-III transmembrane domains physical 1 1 1 Affinity Capture-RNA
DAL7 YIR031C Malate synthase physical 1 1 1 Affinity Capture-RNA
IDP2 YLR174W Cytosolic NADP-specific isocitrate dehydrogenase physical 1 1 1 Affinity Capture-RNA
IRC10 YOL015W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ARG2 YJL071W Acetylglutamate synthase (glutamate N-acetyltransferase) physical 1 1 1 Affinity Capture-RNA
DXO1 YDR370C Cytoplasmic 5' exoribonuclease physical 1 1 1 Affinity Capture-RNA
CTM1 YHR109W Cytochrome c lysine methyltransferase physical 1 1 1 Affinity Capture-RNA
FRE7 YOL152W Putative ferric reductase with similarity to Fre2p physical 1 1 1 Affinity Capture-RNA
FMT1 YBL013W Methionyl-tRNA formyltransferase physical 1 1 1 Affinity Capture-RNA
FAT3 YKL187C Protein required for fatty acid uptake physical 1 1 1 Affinity Capture-RNA
IRS4 YKR019C EH domain-containing protein physical 1 1 1 Affinity Capture-RNA
FLO10 YKR102W Member of the FLO family of cell wall flocculation proteins physical 1 1 1 Affinity Capture-RNA
HXT13 YEL069C Putative transmembrane polyol transporter physical 1 1 1 Affinity Capture-RNA
BUD25 YER014C-A Protein involved in bud-site selection physical 1 1 1 Affinity Capture-RNA
AGP3 YFL055W Low-affinity amino acid permease physical 1 1 1 Affinity Capture-RNA
IMA4 YJL221C Alpha-glucosidase physical 1 1 1 Affinity Capture-RNA
IMA5 YJL216C Alpha-glucosidase physical 1 1 1 Affinity Capture-RNA