Standard name Systematic name Name description Description
PUF3 YLL013C Protein of the mitochondrial outer surface Protein of the mitochondrial outer surface; links the Arp2/3 complex with the mitochondria during anterograde mitochondrial movement; also binds to and promotes degradation of mRNAs for select nuclear-encoded mitochondrial proteins; translationally represses oxidative stress-linked genes; regulates CoQ biosynthesis
Visualize the interactome of PUF3
Links to external databases:
  SGD   |   KEGG   |  

Cell cycle phase and timing of transcription peak

Cell cycle phase Time (min)

CYCLoPs localization & abundance

WT1 WT2 WT3
Cytoplasm 0.994 0.944 0.921
Cell Periphery NaN NaN 0.054

GFP localization & abundance

GFP localization GFP abundance
cytoplasm 846

GO term count

Metabolism Cell cycle Cell division Signal transduction DNA replication
PUF3 5 0 0 0 0

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.
Standard name Systematic name Name description Type #Experiments #Methods #Publications Evidence
COX17 YLL009C Copper metallochaperone that transfers copper to Sco1p and Cox11p physical 9 3 8 Protein-RNA, Protein-RNA, Co-crystal Structure, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HRR25 YPL204W Conserved casein kinase, monopolin subunit physical 6 4 4 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-Western, Affinity Capture-Western, Two-hybrid
BMH1 YER177W 14-3-3 protein, major isoform physical 4 2 4 Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HSP82 YPL240C Hsp90 chaperone physical 4 2 4 Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
SSC1 YJR045C Hsp70 family ATPase physical 4 2 4 Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
PET309 YLR067C Specific translational activator for the COX1 mRNA physical 4 2 4 Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HSP60 YLR259C Tetradecameric mitochondrial chaperonin physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NUC1 YJL208C Major mitochondrial nuclease physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FUN12 YAL035W Translation initiation factor eIF5B physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ATP11 YNL315C Molecular chaperone physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CLU1 YMR012W Subunit of the eukaryotic translation initiation factor 3 (eIF3) physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MAS1 YLR163C Beta subunit of the mitochondrial processing protease (MPP) physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP1 YDR347W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP13 YGR084C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP4 YHL004W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
IMG1 YCR046C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MHR1 YDR296W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP7 YNL005C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL10 YNL284C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRM1 YOR201C Ribose methyltransferase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL1 YDR116C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL16 YBL038W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP20 YDR405W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL19 YNL185C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP49 YKL167C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL13 YKR006C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL20 YKR085C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL24 YMR193W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL25 YGR076C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL35 YDR322W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL39 YML009C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL44 YMR225C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL7 YDR237W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL8 YJL063C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRH4 YGL064C Mitochondrial ATP-dependent RNA helicase of the DEAD-box family physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FYV4 YHR059W Protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP10 YDL045W-A Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP17 YKL003C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP51 YPL118W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS5 YBR251W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS18 YNL306W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MAM33 YIL070C Acidic protein of the mitochondrial matrix physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL3 YMR024W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL38 YKL170W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL6 YHR147C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NAS6 YGR232W Evolutionarily conserved 19S regulatory particle assembly-chaperone physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL23 YOR150W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CYM1 YDR430C Lysine-specific metalloprotease of the pitrilysin family physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RIM2 YBR192W Mitochondrial pyrimidine nucleotide transporter physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIM22 YDL217C Essential core component of mitochondrial TIM22 complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM10 YDR041W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM24 YDR175C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM28 YDR494W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SDH7 YDR511W Mitochondrial protein involved in assembly of succinate dehydrogenase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM18 YER050C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPS26B YER131W Protein component of the small (40S) ribosomal subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YFH7 YFR007W Putative kinase with similarity to the PRK/URK/PANK kinase subfamily physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RMD9 YGL107C Mitochondrial protein that controls mitochondrial gene expression physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM23 YGL129C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SHY1 YGR112W Mitochondrial inner membrane protein required for complex IV assembly physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YGR161W-C YGR161W-C Putative protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YLF2 YHL014C Protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIM10 YHR005C-A Essential protein of the mitochondrial intermembrane space physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RRF1 YHR038W Mitochondrial ribosome recycling factor physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIM44 YIL022W Essential component of the TIM23 complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM25 YIL093C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIM17 YJL143W Essential component of the TIM23 complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM26 YJR101W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM7 YJR113C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
XPT1 YJR133W Xanthine-guanine phosphoribosyl transferase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIM8 YJR135W-A Mitochondrial intermembrane space protein physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM22 YKL155C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PUF3 YLL013C Protein of the mitochondrial outer surface physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
QRI5 YLR204W Mitochondrial inner membrane protein physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YML6 YML025C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RCF1 YML030W Cytochrome c oxidase subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SAM37 YMR060C Component of the Sorting and Assembly Machinery (SAM) complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YTA12 YMR089C Mitochondrial inner membrane m-AAA protease component physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TOM7 YNL070W Component of the TOM (translocase of outer membrane) complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TOM22 YNL131W Component of the TOM (Translocase of Outer Membrane) complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIM23 YNR017W Essential component of the TIM23 complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM19 YNR037C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TUF1 YOR187W Mitochondrial translation elongation factor Tu (EF-Tu) physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RTC6 YPL183W-A Protein involved in translation physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TOM5 YPR133W-A Component of the TOM (translocase of outer membrane) complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TAZ1 YPR140W Lyso-phosphatidylcholine acyltransferase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSD1 YPL104W Mitochondrial aspartyl-tRNA synthetase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ISA2 YPR067W Protein required for maturation of mitochondrial [4Fe-4S] proteins physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
DSS1 YMR287C 3'-5' exoribonuclease physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CAT5 YOR125C Protein required for ubiquinone (Coenzyme Q) biosynthesis physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MNP1 YGL068W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
KEL2 YGR238C Protein that negatively regulates mitotic exit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSS116 YDR194C Mitochondrial transcription elongation factor physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
OMS1 YDR316W Protein integral to the mitochondrial membrane physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FMP10 YER182W Putative protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CHZ1 YER030W Histone chaperone for Htz1p/H2A-H2B dimer physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ARH1 YDR376W Oxidoreductase of the mitochondrial inner membrane physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ECM19 YLR390W Protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GRX5 YPL059W Glutathione-dependent oxidoreductase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
IBA57 YJR122W Protein involved in incorporating iron-sulfur clusters into proteins physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HSP10 YOR020C Mitochondrial matrix co-chaperonin physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MTF1 YMR228W Mitochondrial RNA polymerase specificity factor physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COQ5 YML110C 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CUB1 YPL260W Conserved fungal gene linked to DNA repair and proteasome function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP2 YPR166C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS9 YBR146W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NAM9 YNL137C Mitochondrial ribosomal component of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
DPC29 YGR021W Putative mitochondrial protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRF1 YGL143C Mitochondrial translation release factor physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS35 YGR165W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PAM16 YJL104W Subunit of the import motor (PAM complex) physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PHB1 YGR132C Subunit of the prohibitin complex (Phb1p-Phb2p) physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COX14 YML129C Mitochondrial cytochrome c oxidase (complex IV) assembly factor physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CBP1 YJL209W Mitochondrial protein, regulator of COB mRNA stability and translation physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL11 YDL202W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MBA1 YBR185C Membrane-associated mitochondrial ribosome receptor physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PBP4 YDL053C Pbp1p binding protein physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL17 YNL252C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AIM22 YJL046W Lipoate-protein ligase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS8 YMR158W Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
IAI11 YBL059W Putative mitochondrial protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP35 YNL122C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
INA22 YIR024C F1F0 ATP synthase peripheral stalk assembly factor physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MEF1 YLR069C Mitochondrial elongation factor involved in translational elongation physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COA4 YLR218C Twin Cx(9)C protein involved in cytochrome c oxidase organization physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COQ6 YGR255C Flavin-dependent monooxygenase involved in ubiquinone biosynthesis physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS17 YMR188C Mitochondrial ribosomal protein of the small subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL22 YNL177C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS12 YNR036C Mitochondrial protein physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSF1 YPR047W Mitochondrial phenylalanyl-tRNA synthetase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRS2 YOR334W Mitochondrial inner membrane Mg(2+) channel physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ISM1 YPL040C Mitochondrial isoleucyl-tRNA synthetase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL32 YCR003W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HEM12 YDR047W Uroporphyrinogen decarboxylase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COA3 YJL062W-A Mitochondrial protein required for cytochrome c oxidase assembly physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PHB2 YGR231C Subunit of the prohibitin complex (Phb1p-Phb2p) physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ATP25 YMR098C Protein that associates with mitochondrial ribosome physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL27 YBR282W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AIM11 YER093C-A Protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MDM38 YOL027C Membrane-associated mitochondrial ribosome receptor physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL49 YJL096W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COX11 YPL132W Protein required for delivery of copper to Cox1p physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COA1 YIL157C Mitochondrial inner membrane protein physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COX23 YHR116W Protein that functions in mitochondrial copper homeostasis physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GPI14 YJR013W Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CHO1 YER026C Phosphatidylserine synthase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MTO1 YGL236C Mitochondrial protein physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
IFM1 YOL023W Mitochondrial translation initiation factor 2 physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL33 YMR286W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRX14 YDR115W Putative mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MDM35 YKL053C-A Mitochondrial intermembrane space protein physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL31 YKL138C Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MIC12 YBR262C Component of the MICOS complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CMC1 YKL137W Copper-binding protein of the mitochondrial intermembrane space physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MIX23 YBL107C Mitochondrial intermembrane space protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MZM1 YDR493W Protein required for assembly of the cytochrome bc(1) complex physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MGP12 YDR286C Mitochondrial protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CMC2 YBL059C-A Protein involved in respiratory chain complex assembly or maintenance physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MST1 YKL194C Mitochondrial threonyl-tRNA synthetase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL37 YBR268W Mitochondrial ribosomal protein of the large subunit physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSM1 YGR171C Mitochondrial methionyl-tRNA synthetase (MetRS) physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSS2 YDL107W Peripherally bound inner membrane protein of the mitochondrial matrix physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MIX14 YDR031W Mitochondrial intermembrane space protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FLX1 YIL134W Mitochondrial flavin adenine dinucleotide transporter physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MPM1 YJL066C Mitochondrial intermembrane space protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRX19 YDL183C Protein that may form an active mitochondrial KHE system physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NAT2 YGR147C Protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
POA1 YBR022W Phosphatase that is highly specific for ADP-ribose 1''-phosphate physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PET100 YDR079W Chaperone that facilitates the assembly of cytochrome c oxidase physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PET117 YER058W Assembly factor that couples heme a synthesis to complex IV assembly physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NCE101 YJL205C Protein of unknown function physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MME1 YMR166C Transporter of the mitochondrial inner membrane that exports magnesium physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSC6 YOR354C Multicopy suppressor of HER2 involved in mitochondrial translation physical 4 1 4 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HHF2 YNL030W Histone H4 physical 3 2 3 Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
RPM2 YML091C Protein subunit of mitochondrial RNase P physical 3 2 3 Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
UBP3 YER151C Ubiquitin-specific protease that cleaves Ub-protein fusions physical 3 2 3 Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
HHT2 YNL031C Histone H3 physical 3 2 3 Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-RNA
AIM25 YJR100C Mitochondria protein of unknown function physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CBF5 YLR175W Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NOP7 YGR103W Component of several different pre-ribosomal particles physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MIA40 YKL195W Import and assembly protein in mitochondrial intermembrane space physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GON7 YJL184W Component of the EKC/KEOPS protein complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
POP8 YBL018C Subunit of both RNase MRP and nuclear RNase P physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MAK21 YDR060W Constituent of 66S pre-ribosomal particles physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ALB1 YJL122W Shuttling pre-60S factor physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
DIS3 YOL021C Exosome core complex catalytic subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
LRP1 YHR081W Nuclear exosome-associated nucleic acid binding protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ERG26 YGL001C C-3 sterol dehydrogenase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AEP1 YMR064W Protein required for expression of the mitochondrial OLI1 gene physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GFA1 YKL104C Glutamine-fructose-6-phosphate amidotransferase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
LST8 YNL006W Protein required for the transport of Gap1p physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRP21 YBL090W Mitochondrial ribosomal protein of the small subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
EHD3 YDR036C 3-hydroxyisobutyryl-CoA hydrolase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
IMG2 YCR071C Mitochondrial ribosomal protein of the large subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL28 YDR462W Mitochondrial ribosomal protein of the large subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL36 YBR122C Mitochondrial ribosomal protein of the large subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL9 YGR220C Mitochondrial ribosomal protein of the large subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS28 YDR337W Mitochondrial ribosomal protein of the small subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CCM1 YGR150C Mitochondrial 15S rRNA-binding protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GEP3 YOR205C Protein required for mitochondrial ribosome small subunit biogenesis physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPS16 YPL013C Mitochondrial ribosomal protein of the small subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL15 YLR312W-A Mitochondrial ribosomal protein of the large subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PIM1 YBL022C ATP-dependent Lon protease physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MIR1 YJR077C Mitochondrial phosphate carrier physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PDC1 YLR044C Major of three pyruvate decarboxylase isozymes physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GPT2 YKR067W Glycerol-3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
DIA4 YHR011W Probable mitochondrial seryl-tRNA synthetase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL19B YBL027W Ribosomal 60S subunit protein L19B physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL19A YBR084C-A Ribosomal 60S subunit protein L19A physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SLC1 YDL052C 1-acyl-sn-glycerol-3-phosphate acyltransferase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL31A YDL075W Ribosomal 60S subunit protein L31A physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YDL157C YDL157C Putative protein of unknown function physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
VMA1 YDL185W Subunit A of the V1 peripheral membrane domain of V-ATPase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YRB1 YDR002W Ran GTPase binding protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL27B YDR471W Ribosomal 60S subunit protein L27B physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RIB3 YDR487C 3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SIT1 YEL065W Ferrioxamine B transporter physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SAH1 YER043C S-adenosyl-L-homocysteine hydrolase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL22B YFL034C-A Ribosomal 60S subunit protein L22A physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YPT1 YFL038C Rab family GTPase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL30 YGL030W Ribosomal 60S subunit protein L30 physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RAD6 YGL058W Ubiquitin-conjugating enzyme (E2) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL28 YGL103W Ribosomal 60S subunit protein L28 physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPS2 YGL123W Protein component of the small (40S) subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TOM20 YGR082W Component of the TOM (translocase of outer membrane) complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TDH3 YGR192C Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3 physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL8A YHL033C Ribosomal 60S subunit protein L8A physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TDA3 YHR009C Putative oxidoreductase involved in late endosome to Golgi transport physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPS24B YIL069C Protein component of the small (40S) ribosomal subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL17B YJL177W Ribosomal 60S subunit protein L17B physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPS22A YJL190C Protein component of the small (40S) ribosomal subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SFT1 YKL006C-A Intra-Golgi v-SNARE physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TRM2 YKR056W tRNA methyltransferase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL38 YLR325C Ribosomal 60S subunit protein L38 physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TSA1 YML028W Thioredoxin peroxidase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPS1B YML063W Ribosomal protein of the small (40S) subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SUB1 YMR039C Transcriptional regulator physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TOM40 YMR203W Component of the TOM (translocase of outer membrane) complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TAF9 YMR236W Subunit (17 kDa) of TFIID and SAGA complexes physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PYP1 YNL010W Sugar alcohol phosphatase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YIP3 YNL044W Protein localized to COPII vesicles physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SSB2 YNL209W Cytoplasmic ATPase that is a ribosome-associated molecular chaperone physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SFM1 YOR021C SPOUT methyltransferase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TOM6 YOR045W Component of the TOM (translocase of outer membrane) complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YOR131C YOR131C Putative haloacid dehalogenase-like hydrolase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL1A YPL220W Ribosomal 60S subunit protein L1A physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YPR114W YPR114W Protein distantly similar to ceramide synthases, Lag1p and Lac1p physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YLH47 YPR125W Mitochondrial inner membrane protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RHO1 YPR165W GTP-binding protein of the rho subfamily of Ras-like proteins physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TIM9 YEL020W-A Essential protein of the mitochondrial intermembrane space physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RML2 YEL050C Mitochondrial ribosomal protein of the large subunit (L2) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SWS2 YNL081C Putative mitochondrial ribosomal protein of the small subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RDL2 YOR286W Protein with rhodanese activity physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SUV3 YPL029W ATP-dependent RNA helicase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SAL1 YNL083W ADP/ATP transporter physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SDH5 YOL071W Protein required for flavinylation of Sdh1p physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TCM62 YBR044C Protein involved in assembly of the succinate dehydrogenase complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SCO1 YBR037C Copper-binding protein of mitochondrial inner membrane physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SCO2 YBR024W Protein anchored to mitochondrial inner membrane physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
QRI7 YDL104C Protein involved in threonylcarbamoyl adenosine biosynthesis physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YDR061W YDR061W Protein with similarity to ABC transporter family members physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SRB7 YDR308C Subunit of the RNA polymerase II mediator complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SPO14 YKR031C Phospholipase D physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RRG9 YNL213C Protein of unknown function physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SBH1 YER087C-B Beta subunit of Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SOF1 YLL011W Protein required for biogenesis of 40S (small) ribosomal subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RSM27 YGR215W Mitochondrial ribosomal protein of the small subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YME1 YPR024W Catalytic subunit of i-AAA protease complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SOV1 YMR066W Mitochondrial protein of unknown function physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPL41A YDL184C Ribosomal 60S subunit protein L41A physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
RPO26 YPR187W RNA polymerase subunit ABC23 physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YET2 YMR040W Protein of unknown function that may interact with ribosomes physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YTA7 YGR270W Chromatin-binding ATPase that regulates histone gene expression physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SPC19 YDR201W Essential subunit of the Dam1 complex (aka DASH complex) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SHE9 YDR393W Protein required for normal mitochondrial morphology physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
TOM70 YNL121C Component of the TOM (translocase of outer membrane) complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
REA1 YLR106C Huge dynein-related AAA-type ATPase (midasin) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MGE1 YOR232W Mitochondrial matrix cochaperone physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AHP1 YLR109W Thiol-specific peroxiredoxin physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HIR3 YJR140C Subunit of the HIR complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
GPD2 YOL059W NAD-dependent glycerol 3-phosphate dehydrogenase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PET9 YBL030C Major ADP/ATP carrier of the mitochondrial inner membrane physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CBP3 YPL215W Mitochondrial protein required for assembly of cytochrome bc1 complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CBP6 YBR120C Mitochondrial protein required for translation of the COB mRNA physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CIK1 YMR198W Kinesin-associated protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MDH2 YOL126C Cytoplasmic malate dehydrogenase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HAP3 YBL021C Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MAS2 YHR024C Alpha subunit of the mitochondrial processing protease (MPP) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CTR1 YPR124W High-affinity copper transporter of plasma membrane physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CPR3 YML078W Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ADH6 YMR318C NADPH-dependent medium chain alcohol dehydrogenase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
JJJ1 YNL227C Co-chaperone that stimulates the ATPase activity of Ssa1p physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ARO9 YHR137W Aromatic aminotransferase II physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AFG3 YER017C Mitochondrial inner membrane m-AAA protease component physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRX21 YPR011C Mitochondrial transporter physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PET191 YJR034W Protein required for assembly of cytochrome c oxidase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AIM18 YHR198C Protein of unknown function physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PPA2 YMR267W Mitochondrial inorganic pyrophosphatase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AMD1 YML035C AMP deaminase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
BRE5 YNR051C Ubiquitin protease cofactor physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRS1 YIR021W Splicing protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
BFR1 YOR198C Component of mRNP complexes associated with polyribosomes physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COX18 YGR062C Protein required for membrane insertion of C-terminus of Cox2p physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PET111 YMR257C Mitochondrial translational activator specific for the COX2 mRNA physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PAM18 YLR008C Subunit of the import motor (PAM complex) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PET123 YOR158W Mitochondrial ribosomal protein of the small subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HCH1 YNL281W Heat shock protein regulator physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HFA1 YMR207C Mitochondrial acetyl-coenzyme A carboxylase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MTF2 YDL044C Mitochondrial protein that interacts with mitochondrial RNA polymerase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PET494 YNR045W Mitochondrial translational activator specific for the COX3 mRNA physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ATP1 YBL099W Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
BCS1 YDR375C Protein translocase and chaperone required for Complex III assembly physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
OXA1 YER154W Mitochondrial inner membrane insertase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ABZ1 YNR033W Para-aminobenzoate (PABA) synthase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
PET127 YOR017W Protein with a role in 5'-end processing of mitochondrial RNAs physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CBS2 YDR197W Mitochondrial translational activator of the COB mRNA physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FMO1 YHR176W Flavin-containing monooxygenase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MAP1 YLR244C Methionine aminopeptidase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COI1 YDR381C-A Mitochondrial assembly factor physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ACP1 YKL192C Mitochondrial matrix acyl carrier protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ACB1 YGR037C Acyl-CoA-binding protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSS1 YMR023C Mitochondrial protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ATP12 YJL180C Assembly factor for F1 sector of mitochondrial F1F0 ATP synthase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
NAM2 YLR382C Mitochondrial leucyl-tRNA synthetase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL40 YPL173W Mitochondrial ribosomal protein of the large subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ANY1 YMR010W Protein involved in phospholipid flippase function physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CUZ1 YNL155W Protein with a role in the ubiquitin-proteasome pathway physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSE1 YOL033W Mitochondrial glutamyl-tRNA synthetase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FAS1 YKL182W Beta subunit of fatty acid synthetase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AIM23 YJL131C Mitochondrial translation initiation factor 3 (IF3, mIF3) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CYC3 YAL039C Cytochrome c heme lyase (holocytochrome c synthase) physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MGR3 YMR115W Subunit of the mitochondrial (mt) i-AAA protease supercomplex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MIC26 YGR235C Component of the MICOS complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MTG2 YHR168W Putative GTPase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MTM1 YGR257C Mitochondrial protein of the mitochondrial carrier family physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL51 YPR100W Mitochondrial ribosomal protein of the large subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
HEM2 YGL040C Aminolevulinate dehydratase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COQ2 YNR041C Para hydroxybenzoate polyprenyl transferase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRX6 YNL295W Mitochondrial ribosome-associated protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CDC8 YJR057W Nucleoside monophosphate and nucleoside diphosphate kinase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FIT2 YOR382W Mannoprotein that is incorporated into the cell wall physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
JAC1 YGL018C Specialized J-protein that functions in Fe-S cluster biogenesis physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRPL50 YNR022C Mitochondrial ribosomal protein of the large subunit physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CBP4 YGR174C Mitochondrial protein required for assembly of cytochrome bc1 complex physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FMC1 YIL098C Mitochondrial matrix protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ATP19 YOL077W-A Subunit k of the mitochondrial F1F0 ATP synthase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CYT2 YKL087C Cytochrome c1 heme lyase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COX16 YJL003W Mitochondrial inner membrane protein physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
DPC13 YGL041W-A Putative mitochondrial protein of unknown function physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
LIP2 YLR239C Lipoyl ligase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
COA6 YMR244C-A Protein involved in cytochrome c oxidase (Complex IV) assembly physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
AIM10 YER087W Protein with similarity to tRNA synthetases physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSR1 YHR091C Mitochondrial arginyl-tRNA synthetase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
ATP23 YNR020C Putative metalloprotease of the mitochondrial inner membrane physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
CTM1 YHR109W Cytochrome c lysine methyltransferase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MRX15 YNR040W Membrane-associated mitoribosome receptor physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSY1 YPL097W Mitochondrial tyrosyl-tRNA synthetase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
FRE7 YOL152W Putative ferric reductase with similarity to Fre2p physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
MSW1 YDR268W Mitochondrial tryptophanyl-tRNA synthetase physical 3 1 3 Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
SSB1 YDL229W Cytoplasmic ATPase that is a ribosome-associated molecular chaperone physical 3 2 2 Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-RNA
HRR25 YPL204W Conserved casein kinase, monopolin subunit regulation 3 3 1 co-immunoprecipitation evidence, protein kinase assay evidence, qualitative western immunoblotting evidence
HRR25 YPL204W Conserved casein kinase, monopolin subunit genetic 3 3 1 Synthetic Rescue, Dosage Lethality, Phenotypic Suppression
CCR4 YAL021C Component of the CCR4-NOT transcriptional complex physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
ARP2 YDL029W Essential component of the Arp2/3 complex physical 2 2 2 Affinity Capture-MS, Affinity Capture-Western
HHF1 YBR009C Histone H4 physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
DHH1 YDL160C Cytoplasmic DEAD-box helicase and mRNA decapping activator physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
CRM1 YGR218W Nuclear export factor, exportin physical 2 2 2 Affinity Capture-RNA, Affinity Capture-MS
TUB3 YML124C Alpha-tubulin physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
YHB1 YGR234W Nitric oxide oxidoreductase physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
TIF1 YKR059W Translation initiation factor eIF4A physical 2 2 2 Protein-RNA, Affinity Capture-RNA
SSA1 YAL005C ATPase involved in protein folding and NLS-directed nuclear transport physical 2 2 2 Affinity Capture-RNA, Affinity Capture-MS
VAM6 YDL077C Guanine nucleotide exchange factor for the GTPase Gtr1p physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
UTP10 YJL109C Nucleolar protein physical 2 2 2 Affinity Capture-RNA, Affinity Capture-MS
LSM12 YHR121W Protein of unknown function that may function in RNA processing physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
HSP104 YLL026W Disaggregase physical 2 2 2 Affinity Capture-RNA, Affinity Capture-MS
HHT1 YBR010W Histone H3 physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
FMP48 YGR052W Putative protein of unknown function physical 2 2 2 Affinity Capture-MS, Affinity Capture-RNA
HXK1 YFR053C Hexokinase isoenzyme 1 physical 2 2 2 Protein-RNA, Affinity Capture-RNA
POB3 YML069W Subunit of the heterodimeric FACT complex (Spt16p-Pob3p) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DBP9 YLR276C DEAD-box protein required for 27S rRNA processing physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
HAS1 YMR290C ATP-dependent RNA helicase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
IMH1 YLR309C Protein involved in vesicular transport physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PEX19 YDL065C Chaperone and import receptor for newly-synthesized class I PMPs physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
POP1 YNL221C Subunit of RNase MRP, nuclear RNase P and telomerase complexes physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
POP3 YNL282W Subunit of both RNase MRP and nuclear RNase P physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
KRE29 YER038C Subunit of the SMC5-SMC6 complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
POL5 YEL055C Protein involved in 60S assembly and pre-40S AFs recycling physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NHP2 YDL208W Protein related to mammalian high mobility group (HMG) proteins physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ARP9 YMR033W Component of both the SWI/SNF and RSC chromatin remodeling complexes physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ILS1 YBL076C Cytoplasmic isoleucine-tRNA synthetase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DST1 YGL043W General transcription elongation factor TFIIS physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NIP1 YMR309C eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NAB2 YGL122C Nuclear polyadenylated RNA-binding protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
OLA1 YBR025C P-loop ATPase with similarity to human OLA1 and bacterial YchF physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ABD1 YBR236C Methyltransferase genetic 2 1 2 Negative Genetic, Negative Genetic
APC1 YNL172W Largest subunit of the Anaphase-Promoting Complex/Cyclosome physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ARO1 YDR127W Pentafunctional arom protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CPR1 YDR155C Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CTK1 YKL139W Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CYR1 YJL005W Adenylate cyclase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
EMP24 YGL200C Component of the p24 complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
FTH1 YBR207W Putative high affinity iron transporter physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GLO3 YER122C ADP-ribosylation factor GTPase activating protein (ARF GAP) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
BDF2 YDL070W Protein involved in transcription initiation physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DYN1 YKR054C Cytoplasmic heavy chain dynein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AEP2 YMR282C Mitochondrial protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
IPP1 YBR011C Cytoplasmic inorganic pyrophosphatase (PPase) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
HSL1 YKL101W Nim1p-related protein kinase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
FAP7 YDL166C Essential NTPase required for small ribosome subunit synthesis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MRPL4 YLR439W Mitochondrial ribosomal protein of the large subunit physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MSH6 YDR097C Protein required for mismatch repair in mitosis and meiosis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MYO4 YAL029C Type V myosin motor involved in actin-based transport of cargos physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
LAT1 YNL071W Dihydrolipoamide acetyltransferase component (E2) of the PDC physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AAP1 YHR047C Arginine/alanine amino peptidase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PRO2 YOR323C Gamma-glutamyl phosphate reductase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NAB3 YPL190C RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
POL2 YNL262W Catalytic subunit of DNA polymerase (II) epsilon physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DBP8 YHR169W ATPase, putative RNA helicase of the DEAD-box family physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MKT1 YNL085W Protein similar to nucleases that forms a complex with Pbp1p physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AMS1 YGL156W Vacuolar alpha mannosidase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DEP1 YAL013W Component of the Rpd3L histone deacetylase complex genetic 2 1 2 Positive Genetic, Positive Genetic
DBP2 YNL112W ATP-dependent RNA helicase of the DEAD-box protein family physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CSE1 YGL238W Nuclear envelope protein that acts as a recycling factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
BGL2 YGR282C Endo-beta-1,3-glucanase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
HRK1 YOR267C Protein kinase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PTC1 YDL006W Type 2C protein phosphatase (PP2C) genetic 2 1 2 Negative Genetic, Negative Genetic
PSK1 YAL017W PAS domain-containing serine/threonine protein kinase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TFC3 YAL001C Subunit of RNA polymerase III transcription initiation factor complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SHG1 YBR258C Subunit of the COMPASS (Set1C) complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SNF5 YBR289W Subunit of the SWI/SNF chromatin remodeling complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YCR023C YCR023C Vacuolar membrane protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RMD1 YDL001W Cytoplasmic protein required for sporulation physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TMA17 YDL110C Regulatory gamma subunit of fatty acid synthase (FAS) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPN5 YDL147W Subunit of the CSN and 26S proteasome lid complexes physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YDL206W YDL206W Putative protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
REG1 YDR028C Regulatory subunit of type 1 protein phosphatase Glc7p physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SPO71 YDR104C Meiosis-specific protein required for prospore membrane morphogenesis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SWI5 YDR146C Transcription factor that recruits Mediator and Swi/Snf complexes physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SAC3 YDR159W mRNA export factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SWR1 YDR334W Swi2/Snf2-related ATPase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YHP1 YDR451C Homeobox transcriptional repressor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TOM1 YDR457W E3 ubiquitin ligase of the hect-domain class physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SSA4 YER103W Heat shock protein that is highly induced upon stress physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPO41 YFL036W Mitochondrial RNA polymerase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RGD2 YFL047W GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TIF4632 YGL049C Translation initiation factor eIF4G and scaffold protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SDS23 YGL056C Protein involved in cell separation during budding physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
XRN1 YGL173C Evolutionarily-conserved 5'-3' exonuclease physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YGR017W YGR017W Putative protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SPT4 YGR063C Spt4p/5p (DSIF) transcription elongation factor complex subunit physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
XKS1 YGR194C Xylulokinase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RAD2 YGR258C Single-stranded DNA endonuclease physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TAF1 YGR274C TFIID subunit, involved in RNA pol II transcription initiation physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RIM4 YHL024W Putative RNA-binding protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TRA1 YHR099W Subunit of SAGA and NuA4 histone acetyltransferase complexes physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RCI37 YIL077C Protein that associates with the large mitoribosomal subunit physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
STH1 YIL126W ATPase component of the RSC chromatin remodeling complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SNX4 YJL036W Sorting nexin physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
UBX6 YJL048C UBX (ubiquitin regulatory X) domain-containing protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TIM54 YJL054W Component of the mitochondrial TIM22 complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TRL1 YJL087C tRNA ligase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ROQ1 YJL144W Ub-ligase substrate-specificity factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YMR1 YJR110W Phosphatidylinositol 3-phosphate (PI3P) phosphatase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YKL222C YKL222C Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SED5 YLR026C cis-Golgi t-SNARE syntaxin physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
XDJ1 YLR090W Chaperone with a role in facilitating mitochondrial protein import physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SLS1 YLR139C Mitochondrial membrane protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YLR177W YLR177W Putative protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
UPS1 YLR193C Phosphatidic acid transfer protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YSH1 YLR277C Endoribonuclease physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PUT7 YLR283W Regulator of mitochondrial proline metabolism physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RSC2 YLR357W Component of the RSC chromatin remodeling complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SSQ1 YLR369W Mitochondrial hsp70-type molecular chaperone physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SMC6 YLR383W Subunit of the SMC5-SMC6 complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YLR419W YLR419W Putative helicase with limited sequence similarity to human Rb protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TSR2 YLR435W Protein with a potential role in pre-rRNA processing physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SST2 YLR452C GTPase-activating protein for Gpa1p physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YAP1 YML007W Basic leucine zipper (bZIP) transcription factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
STV1 YMR054W Subunit a of the vacuolar-ATPase V0 domain physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
STO1 YMR125W Large subunit of the nuclear mRNA cap-binding protein complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SAM50 YNL026W Component of the Sorting and Assembly Machinery (SAM) complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TOP2 YNL088W Topoisomerase II physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RAS2 YNL098C GTP-binding protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
WHI3 YNL197C RNA binding protein that modulates mRNA stability physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
URE2 YNL229C Nitrogen catabolite repression transcriptional regulator physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RIM21 YNL294C pH sensor molecule, component of the RIM101 pathway physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SNF12 YNR023W 73 kDa subunit of the SWI/SNF chromatin remodeling complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SIN3 YOL004W Component of both the Rpd3S and Rpd3L histone deacetylase complexes genetic 2 1 2 Positive Genetic, Positive Genetic
TMC1 YOR052C AN1-type zinc finger protein, effector of proteotoxic stress response physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
THI80 YOR143C Thiamine pyrophosphokinase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SME1 YOR159C Core Sm protein Sm E physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YRM1 YOR172W Zinc finger transcription factor involved in multidrug resistance physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RAD1 YPL022W Single-stranded DNA endonuclease (with Rad10p) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SRP68 YPL243W Core component of the signal recognition particle (SRP) complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YAH1 YPL252C Ferredoxin of the mitochondrial matrix physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SGV1 YPR161C Cyclin (Bur2p)-dependent protein kinase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SCT1 YBL011W Glycerol 3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SRB6 YBR253W Subunit of the RNA polymerase II mediator complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YCL049C YCL049C Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPS14A YCR031C Protein component of the small (40S) ribosomal subunit physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPL12A YEL054C Ribosomal 60S subunit protein L12A physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TRP2 YER090W Anthranilate synthase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SSZ1 YHR064C Hsp70 protein that interacts with Zuo1p (a DnaJ homolog) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPL34B YIL052C Ribosomal 60S subunit protein L34B physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SEC28 YIL076W Epsilon-COP subunit of the coatomer physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SEC53 YFL045C Phosphomannomutase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPL34A YER056C-A Ribosomal 60S subunit protein L34A physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YDL086W YDL086W Putative carboxymethylenebutenolidase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
UBC1 YDR177W Ubiquitin-conjugating enzyme physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YDR210W YDR210W Predicted tail-anchored plasma membrane protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SAM2 YDR502C S-adenosylmethionine synthetase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PUS2 YGL063W Mitochondrial tRNA:pseudouridine synthase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPL1B YGL135W Ribosomal 60S subunit protein L1B physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YGR054W YGR054W Eukaryotic initiation factor eIF2A physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YIP1 YGR172C Integral membrane protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TIM13 YGR181W Mitochondrial intermembrane space protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ZUO1 YGR285C Ribosome-associated chaperone physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SUI2 YJR007W Alpha subunit of the translation initiation factor eIF2 physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YJR096W YJR096W Xylose and arabinose reductase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SOD1 YJR104C Cytosolic copper-zinc superoxide dismutase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RLP24 YLR009W Essential protein required for ribosomal large subunit biogenesis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RNH203 YLR154C Ribonuclease H2 subunit physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPL26A YLR344W Ribosomal 60S subunit protein L26A physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPS22B YLR367W Protein component of the small (40S) ribosomal subunit physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPL31B YLR406C Ribosomal 60S subunit protein L31B physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YML079W YML079W Non-essential protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TIF34 YMR146C eIF3i subunit of the eukaryotic translation initiation factor 3 (eIF3) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YME2 YMR302C Integral inner mitochondrial membrane protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YMR317W YMR317W Putative protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ZWF1 YNL241C Glucose-6-phosphate dehydrogenase (G6PD) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPL18B YNL301C Ribosomal 60S subunit protein L18B physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SNZ2 YNL333W Protein involved in thiamine and pyridoxine biosynthesis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SPE2 YOL052C S-adenosylmethionine decarboxylase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPL18A YOL120C Ribosomal 60S subunit protein L18A physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
UTP23 YOR004W Component of the small subunit processome physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YOR019W YOR019W Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YNG1 YOR064C Subunit of the NuA3 histone acetyltransferase complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TMA46 YOR091W Protein of unknown function that associates with translating ribosomes physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SER1 YOR184W 3-phosphoserine aminotransferase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
RPB8 YOR224C RNA polymerase subunit ABC14.5 physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SVL3 YPL032C Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TIM50 YPL063W Essential component of the TIM23 complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YDC1 YPL087W Alkaline dihydroceramidase, involved in sphingolipid metabolism physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SEC62 YPL094C Essential subunit of Sec63 complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
SRP72 YPL210C Core component of the signal recognition particle (SRP) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TIP41 YPR040W Tap42p-interacting protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YLR363W-A YLR363W-A Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YLR361C-A YLR361C-A Putative protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
YCS4 YLR272C Subunit of the condensin complex genetic 2 1 2 Negative Genetic, Negative Genetic
ARF1 YDL192W ADP-ribosylation factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NOP6 YDL213C rRNA-binding protein required for 40S ribosomal subunit biogenesis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PHO81 YGR233C Cyclin-dependent kinase (CDK) inhibitor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AXL1 YPR122W Haploid specific endoprotease of a-factor mating pheromone physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
LIA1 YJR070C Deoxyhypusine hydroxylase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PCT1 YGR202C Cholinephosphate cytidylyltransferase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CBK1 YNL161W Serine/threonine protein kinase of the the RAM signaling network physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ADH3 YMR083W Mitochondrial alcohol dehydrogenase isozyme III physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GRS1 YBR121C Cytoplasmic and mitochondrial glycyl-tRNA synthase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GIS4 YML006C CAAX box containing protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ICP55 YER078C Mitochondrial aminopeptidase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CLB2 YPR119W B-type cyclin involved in cell cycle progression physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
FZO1 YBR179C Mitofusin, protein involved in mitochondrial outer membrane fusion physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
EAP1 YKL204W eIF4E-associated protein, competes with eIF4G for binding to eIF4E physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DUT1 YBR252W Deoxyuridine triphosphate diphosphatase (dUTPase) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PRS5 YOL061W 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MLP2 YIL149C Myosin-like protein associated with the nuclear envelope physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ATP7 YKL016C Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DID4 YKL002W Class E Vps protein of the ESCRT-III complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AFT1 YGL071W Transcription factor involved in iron utilization and homeostasis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NIF3 YGL221C Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
KEG1 YFR042W Integral membrane protein of the ER physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CLB1 YGR108W B-type cyclin involved in cell cycle progression physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CHL1 YPL008W Probable DNA helicase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CLC1 YGR167W Clathrin light chain physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PNG1 YPL096W Conserved peptide N-glycanase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MGM1 YOR211C Mitochondrial GTPase, present in complex with Ugo1p and Fzo1p physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CST9 YLR394W SUMO E3 ligase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ATG2 YNL242W Peripheral membrane protein required for autophagic vesicle formation physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
BBP1 YPL255W Protein required for the spindle pole body (SPB) duplication physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
OST5 YGL226C-A Zeta subunit of the oligosaccharyltransferase complex of the ER lumen physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GLN3 YER040W Transcriptional activator in nitrogen catabolite repression system physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ERV46 YAL042W Protein localized to COPII-coated vesicles physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
COQ1 YBR003W Hexaprenyl pyrophosphate synthetase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
HMT1 YBR034C Nuclear SAM-dependent mono- and asymmetric methyltransferase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PEX11 YOL147C Peroxisomal protein required for medium-chain fatty acid oxidation physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DJP1 YIR004W ER-associated chaperone involved in protein targeting physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CMR2 YOR093C Putative protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GFD2 YCL036W Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
IVY1 YDR229W Phospholipid-binding protein that interacts with both Ypt7p and Vps33p physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
HO YDL227C Site-specific endonuclease physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MFA2 YNL145W Mating pheromone a-factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
FMP27 YLR454W Protein with structural similarity to lipid transport protein Vps13p physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ATP18 YML081C-A Subunit of the mitochondrial F1F0 ATP synthase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
FRK1 YPL141C Protein kinase of unknown cellular role physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PDP3 YLR455W Component of the NuA3b histone acetyltransferase complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CIR1 YGR207C Mitochondrial protein that interacts with frataxin (Yfh1p) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AIM45 YPR004C Putative ortholog of mammalian ETF-alpha physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PAM17 YKR065C Constituent of the TIM23 complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MF(ALPHA)1 YPL187W Mating pheromone alpha-factor, made by alpha cells physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MSS11 YMR164C Transcription factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DIC1 YLR348C Mitochondrial dicarboxylate carrier physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
LYS20 YDL182W Homocitrate synthase isozyme and functions in DNA repair physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
HYR1 YIR037W Glutathione peroxidase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NFS1 YCL017C Cysteine desulfurase involved in iron-sulfur cluster biogenesis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
BUL2 YML111W Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PAM1 YDR251W Essential protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GEP7 YGL057C Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MMF1 YIL051C Mitochondrial protein required for transamination of isoleucine physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MEF2 YJL102W Mitochondrial elongation factor involved in translational elongation physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
LAM1 YHR155W Putative sterol transfer protein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
INA17 YPL099C F1F0 ATPase synthase peripheral stalk assembly factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GCV3 YAL044C H subunit of the mitochondrial glycine decarboxylase complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MPA43 YNL249C Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NUP192 YJL039C Essential subunit of inner ring of nuclear pore complex (NPC) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
IPT1 YDR072C Inositolphosphotransferase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GGC1 YDL198C Mitochondrial GTP/GDP transporter physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ECM7 YLR443W Putative integral membrane protein with a role in calcium uptake physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MSK1 YNL073W Mitochondrial lysine-tRNA synthetase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
COX10 YPL172C Heme A:farnesyltransferase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MF(ALPHA)2 YGL089C Mating pheromone alpha-factor, made by alpha cells physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MET7 YOR241W Folylpolyglutamate synthetase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ARF3 YOR094W Glucose-repressible ADP-ribosylation factor physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ARO10 YDR380W Phenylpyruvate decarboxylase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ADK2 YER170W Mitochondrial adenylate kinase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MSP1 YGR028W Highly-conserved N-terminally anchored AAA-ATPase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
LYP1 YNL268W Lysine permease physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CCW12 YLR110C Cell wall mannoprotein physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
HSP78 YDR258C Oligomeric mitochondrial matrix chaperone physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GTF1 YGR102C Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
DNF3 YMR162C Trans-golgi network aminophospholipid translocase (flippase) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AGC1 YPR021C Mitochondrial amino acid transporter physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AFG1 YEL052W Protein that may act as a chaperone for cytochrome c oxidase subunits physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AIM20 YIL158W Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MIC10 YCL057C-A Conserved component of the MICOS complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ECM18 YDR125C Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
HEM3 YDL205C Porphobilinogen deaminase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CQD2 YLR253W Mitochondrial protein involved in lipid homeostasis physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ALD3 YMR169C Cytoplasmic aldehyde dehydrogenase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PCC1 YKR095W-A Component of the EKC/KEOPS protein complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MRS3 YJL133W Iron transporter, mediates Fe2+ transport across inner mito membrane physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PRM7 YDL039C Pheromone-regulated protein genetic 2 1 2 Positive Genetic, Positive Genetic
AIM33 YML087C Protein of unknown function, highly conserved across species physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
CBT1 YKL208W Protein involved in 5' RNA end processing physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
AIM36 YMR157C Protein of unknown function physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
MGR2 YPL098C Subunit of the TIM23 translocase complex physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NAR1 YNL240C Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
GYP8 YFL027C GTPase-activating protein for yeast Rab family members physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
LRE1 YCL051W Protein involved in control of cell wall structure and stress response physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
ARG2 YJL071W Acetylglutamate synthase (glutamate N-acetyltransferase) physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
PDE2 YOR360C High-affinity cyclic AMP phosphodiesterase physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
NCA3 YJL116C Protein involved in mitochondrion organization physical 2 1 2 Affinity Capture-RNA, Affinity Capture-RNA
TOM20 YGR082W Component of the TOM (translocase of outer membrane) complex genetic 2 2 1 Synthetic Lethality, Phenotypic Enhancement
MDM12 YOL009C Mitochondrial outer membrane protein, ERMES complex subunit physical 2 2 1 Two-hybrid, Affinity Capture-Western
GEP3 YOR205C Protein required for mitochondrial ribosome small subunit biogenesis genetic 2 1 1 Negative Genetic, Negative Genetic
MYO2 YOR326W Type V myosin motor involved in actin-based transport of cargos genetic 2 1 1 Negative Genetic, Negative Genetic
YME1 YPR024W Catalytic subunit of i-AAA protease complex genetic 2 1 1 Negative Genetic, Negative Genetic
MOB2 YFL034C-B Activator of Cbk1p kinase genetic 2 1 1 Negative Genetic, Negative Genetic
ILM1 YJR118C Protein of unknown function genetic 2 1 1 Negative Genetic, Negative Genetic
MDM32 YOR147W Mitochondrial inner membrane protein with similarity to Mdm31p genetic 2 1 1 Positive Genetic, Positive Genetic
HER2 YMR293C Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex genetic 2 1 1 Negative Genetic, Negative Genetic
MDM35 YKL053C-A Mitochondrial intermembrane space protein genetic 2 1 1 Negative Genetic, Negative Genetic
IXR1 YKL032C Transcriptional repressor that regulates hypoxic genes during normoxia regulation 1 1 1 DNA to cDNA expression microarray evidence
FKH2 YNL068C Forkhead family transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MET32 YDR253C Zinc-finger DNA-binding transcription factor regulation 1 1 1 chromatin immunoprecipitation-chip evidence
MET4 YNL103W Leucine-zipper transcriptional activator regulation 1 1 1 chromatin immunoprecipitation-chip evidence
REB1 YBR049C RNA polymerase I enhancer binding protein regulation 1 1 1 chromatin immunoprecipitation-chip evidence
GCN4 YEL009C bZIP transcriptional activator of amino acid biosynthetic genes regulation 1 1 1 DNA to cDNA expression microarray evidence
BCY1 YIL033C Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA) regulation 1 1 1 qualitative western immunoblotting evidence
CHD1 YER164W Chromatin remodeler that regulates various aspects of transcription physical 1 1 1 Affinity Capture-RNA
CTR9 YOL145C Component of the Paf1p complex involved in transcription elongation physical 1 1 1 Affinity Capture-RNA
AME1 YBR211C Essential kinetochore protein associated with microtubules and SPBs physical 1 1 1 Affinity Capture-RNA
DED81 YHR019C Cytosolic asparaginyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
LEO1 YOR123C Component of the Paf1 complex physical 1 1 1 Affinity Capture-RNA
MCM22 YJR135C Outer kinetochore protein and component of the Ctf3 subcomplex physical 1 1 1 Affinity Capture-RNA
NSL1 YPL233W Essential component of the MIND kinetochore complex physical 1 1 1 Affinity Capture-RNA
NSE1 YLR007W Component of the SMC5-SMC6 complex physical 1 1 1 Affinity Capture-RNA
ESF1 YDR365C Nucleolar protein involved in pre-rRNA processing physical 1 1 1 Affinity Capture-RNA
ENP2 YGR145W Component of the SSU physical 1 1 1 Affinity Capture-RNA
GLC7 YER133W Type 1 S/T protein phosphatase (PP1) catalytic subunit physical 1 1 1 Affinity Capture-MS
ESA1 YOR244W Catalytic subunit of the histone acetyltransferase complex (NuA4) physical 1 1 1 Affinity Capture-RNA
EAF5 YEL018W Non-essential subunit of the NuA4 acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
EBP2 YKL172W Required for 25S rRNA maturation and 60S ribosomal subunit assembly physical 1 1 1 Affinity Capture-RNA
NOP2 YNL061W rRNA m5C methyltransferase physical 1 1 1 Affinity Capture-RNA
NOP4 YPL043W Nucleolar protein physical 1 1 1 Affinity Capture-RNA
IPI1 YHR085W Component of the Rix1 complex and possibly pre-replicative complexes physical 1 1 1 Affinity Capture-RNA
CAB3 YKL088W Subunit of PPCDC and CoA-SPC complexes involved in CoA biosynthesis physical 1 1 1 Affinity Capture-RNA
ADH1 YOL086C Alcohol dehydrogenase physical 1 1 1 Affinity Capture-RNA
AMN1 YBR158W Modulator of cell separation and mitotic exit physical 1 1 1 Affinity Capture-RNA
COR1 YBL045C Core subunit of the ubiquinol-cytochrome c reductase complex physical 1 1 1 Affinity Capture-RNA
POP6 YGR030C Subunit of RNase MRP, nuclear RNase P and telomerase physical 1 1 1 Affinity Capture-RNA
BRR2 YER172C RNA-dependent ATPase RNA helicase (DEIH box) genetic 1 1 1 Negative Genetic
PRP46 YPL151C Member of the NineTeen Complex (NTC) physical 1 1 1 Affinity Capture-RNA
PRP8 YHR165C Component of U4/U6-U5 snRNP complex physical 1 1 1 Affinity Capture-RNA
LTO1 YNL260C Substrate-specific adaptor protein involved in apo-Rli1p maturation genetic 1 1 1 Negative Genetic
EMW1 YNL313C Essential conserved protein with a role in cell wall integrity physical 1 1 1 Affinity Capture-RNA
CDC42 YLR229C Small rho-like GTPase physical 1 1 1 Affinity Capture-RNA
NOC2 YOR206W Protein involved in ribosome biogenesis physical 1 1 1 Affinity Capture-RNA
FRT2 YAL028W Tail-anchored ER membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
HAP5 YOR358W Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex physical 1 1 1 Affinity Capture-RNA
MCM21 YDR318W Component of the kinetochore sub-complex COMA physical 1 1 1 Affinity Capture-RNA
NAN1 YPL126W U3 snoRNP protein physical 1 1 1 Affinity Capture-RNA
DIP2 YLR129W Nucleolar protein physical 1 1 1 Affinity Capture-RNA
KES1 YPL145C Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger physical 1 1 1 Affinity Capture-RNA
LOC1 YFR001W Nucleolar protein involved in the asymmetric localization of ASH1 mRNA physical 1 1 1 Affinity Capture-RNA
MRT4 YKL009W Protein involved in mRNA turnover and ribosome assembly physical 1 1 1 Affinity Capture-RNA
NOP15 YNL110C Constituent of 66S pre-ribosomal particles physical 1 1 1 Affinity Capture-RNA
CIC1 YHR052W Essential protein that interacts with proteasome components physical 1 1 1 Affinity Capture-RNA
ARC1 YGL105W Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases physical 1 1 1 Affinity Capture-RNA
ARC1 YGL105W Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases genetic 1 1 1 Negative Genetic
MES1 YGR264C Methionyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
GAR1 YHR089C Protein component of the H/ACA snoRNP pseudouridylase complex physical 1 1 1 Affinity Capture-RNA
NOP56 YLR197W Essential evolutionarily-conserved nucleolar protein physical 1 1 1 Affinity Capture-RNA
DBP7 YKR024C Putative ATP-dependent RNA helicase of the DEAD-box family physical 1 1 1 Affinity Capture-RNA
MTR4 YJL050W RNA duplex-sensing translocase physical 1 1 1 Affinity Capture-RNA
PAT1 YCR077C Deadenylation-dependent mRNA-decapping factor physical 1 1 1 Affinity Capture-RNA
LSM3 YLR438C-A Lsm (Like Sm) protein genetic 1 1 1 Positive Genetic
PRP3 YDR473C Splicing factor physical 1 1 1 Affinity Capture-RNA
NOP1 YDL014W Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus physical 1 1 1 Affinity Capture-RNA
DED1 YOR204W ATP-dependent DEAD-box RNA helicase with strand-annealing activity physical 1 1 1 Affinity Capture-RNA
PAB1 YER165W Poly(A) binding protein physical 1 1 1 Affinity Capture-MS
IML1 YJR138W GTPase-activating protein (GAP) subunit of the Iml1p/SEACIT complex physical 1 1 1 Affinity Capture-RNA
PSY2 YNL201C Subunit of protein phosphatase PP4 complex physical 1 1 1 Affinity Capture-RNA
CBC2 YPL178W Small subunit of the heterodimeric cap binding complex with Sto1p physical 1 1 1 Affinity Capture-RNA
HPR1 YDR138W Subunit of THO/TREX complexes physical 1 1 1 Affinity Capture-RNA
NUT1 YGL151W Component of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
MUD1 YBR119W U1 snRNP A protein physical 1 1 1 Affinity Capture-RNA
GCD1 YOR260W Gamma subunit of the translation initiation factor eIF2B genetic 1 1 1 Negative Genetic
ACT1 YFL039C Actin, structural protein in cytoskeleton genetic 1 1 1 Positive Genetic
CFT2 YLR115W Subunit of the mRNA cleavage and polyadenlylation factor (CPF) physical 1 1 1 Affinity Capture-RNA
MPE1 YKL059C Subunit of CPF cleavage and polyadenylation factor and E3 Ub-ligase physical 1 1 1 Affinity Capture-RNA
GIR2 YDR152W Highly-acidic RWD domain-containing cytoplasmic protein physical 1 1 1 Affinity Capture-RNA
PRE10 YOR362C Alpha 7 subunit of the 20S proteasome physical 1 1 1 Affinity Capture-RNA
CDC39 YCR093W Subunit of the CCR4-NOT1 core complex physical 1 1 1 Affinity Capture-RNA
ECM16 YMR128W Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP physical 1 1 1 Affinity Capture-RNA
KAP104 YBR017C Transportin or cytosolic karyopherin beta 2 physical 1 1 1 Affinity Capture-RNA
NAM7 YMR080C ATP-dependent RNA helicase of the SFI superfamily physical 1 1 1 Affinity Capture-MS
PEP1 YBL017C Type I transmembrane sorting receptor for multiple vacuolar hydrolases physical 1 1 1 Affinity Capture-RNA
BMS1 YPL217C GTPase required for ribosomal subunit synthesis and rRNA processing genetic 1 1 1 Positive Genetic
HGH1 YGR187C Chaperone protein for translation factor eEF2 physical 1 1 1 Affinity Capture-RNA
ACC1 YNR016C Acetyl-CoA carboxylase, biotin containing enzyme physical 1 1 1 Affinity Capture-RNA
APL1 YJR005W Beta-adaptin physical 1 1 1 Affinity Capture-RNA
APL6 YGR261C Beta3-like subunit of the yeast AP-3 complex physical 1 1 1 Affinity Capture-RNA
BEM2 YER155C Rho GTPase activating protein (RhoGAP) physical 1 1 1 Affinity Capture-RNA
CDC14 YFR028C Protein phosphatase required for mitotic exit physical 1 1 1 Affinity Capture-RNA
CDC11 YJR076C Component of the septin ring that is required for cytokinesis physical 1 1 1 Affinity Capture-RNA
BNI1 YNL271C Formin physical 1 1 1 Affinity Capture-RNA
CDC55 YGL190C Regulatory subunit B of protein phosphatase 2A (PP2A) physical 1 1 1 Affinity Capture-RNA
DBP10 YDL031W Putative ATP-dependent RNA helicase of the DEAD-box protein family physical 1 1 1 Affinity Capture-RNA
NSA2 YER126C Protein constituent of 66S pre-ribosomal particles physical 1 1 1 Affinity Capture-RNA
IPI3 YNL182C Component of the Rix1 complex and pre-replicative complexes (pre-RCs) physical 1 1 1 Affinity Capture-RNA
NOG2 YNR053C Putative GTPase genetic 1 1 1 Negative Genetic
AVO1 YOL078W Component of the membrane-bound TORC2 complex physical 1 1 1 Affinity Capture-RNA
CUS1 YMR240C Protein required for assembly of U2 snRNP into the spliceosome physical 1 1 1 Affinity Capture-RNA
DCP2 YNL118C Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex physical 1 1 1 Affinity Capture-RNA
ENO1 YGR254W Enolase I, a phosphopyruvate hydratase physical 1 1 1 Affinity Capture-RNA
EMG1 YLR186W Methyltransferase for rRNA physical 1 1 1 Affinity Capture-RNA
ERO1 YML130C Thiol oxidase required for oxidative protein folding in the ER physical 1 1 1 Affinity Capture-RNA
FIP1 YJR093C Subunit of cleavage polyadenylation factor (CPF) genetic 1 1 1 Negative Genetic
FPR1 YNL135C Peptidyl-prolyl cis-trans isomerase (PPIase) genetic 1 1 1 Negative Genetic
FKS1 YLR342W Catalytic subunit of 1,3-beta-D-glucan synthase physical 1 1 1 Affinity Capture-RNA
GCN2 YDR283C Protein kinase physical 1 1 1 Affinity Capture-RNA
GDI1 YER136W GDP dissociation inhibitor physical 1 1 1 Affinity Capture-RNA
ESP1 YGR098C Separase/separin, a caspase-like cysteine protease physical 1 1 1 Affinity Capture-RNA
CTO1 YCR015C Protein required for cold tolerance physical 1 1 1 Affinity Capture-RNA
HAT1 YPL001W Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
HRP1 YOL123W Subunit of cleavage factor I physical 1 1 1 Affinity Capture-RNA
HTB2 YBL002W Histone H2B physical 1 1 1 Affinity Capture-RNA
ISW1 YBR245C ATPase subunit of imitation-switch (ISWI) class chromatin remodelers physical 1 1 1 Affinity Capture-RNA
ISW2 YOR304W ATP-dependent DNA translocase involved in chromatin remodeling physical 1 1 1 Affinity Capture-RNA
ECM29 YHL030W Scaffold protein physical 1 1 1 Affinity Capture-RNA
LCB2 YDR062W Component of serine palmitoyltransferase physical 1 1 1 Affinity Capture-RNA
KEL1 YHR158C Protein required for proper cell fusion and cell morphology physical 1 1 1 Affinity Capture-RNA
MAK10 YEL053C Non-catalytic subunit of the NatC N-terminal acetyltransferase physical 1 1 1 Affinity Capture-RNA
MAK5 YBR142W Essential nucleolar protein physical 1 1 1 Affinity Capture-RNA
MBP1 YDL056W Transcription factor physical 1 1 1 Affinity Capture-RNA
CSE2 YNR010W Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
MED2 YDL005C Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
FBA1 YKL060C Fructose 1,6-bisphosphate aldolase physical 1 1 1 Affinity Capture-RNA
MED6 YHR058C Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
MLH1 YMR167W Protein required for mismatch repair in mitosis and meiosis physical 1 1 1 Affinity Capture-RNA
MOT1 YPL082C Essential protein involved in regulation of transcription physical 1 1 1 Affinity Capture-RNA
HSC82 YMR186W Cytoplasmic chaperone of the Hsp90 family physical 1 1 1 Affinity Capture-RNA
ATG26 YLR189C UDP-glucose:sterol glucosyltransferase physical 1 1 1 Affinity Capture-RNA
HDA3 YPR179C Subunit of HDA1 histone deacetylase complex physical 1 1 1 Affinity Capture-RNA
HDA2 YDR295C Subunit of HDA1 histone deacetylase complex physical 1 1 1 Affinity Capture-RNA
MEC1 YBR136W Genome integrity checkpoint protein and PI kinase superfamily member physical 1 1 1 Affinity Capture-RNA
MSH3 YCR092C Mismatch repair protein physical 1 1 1 Affinity Capture-RNA
CMR1 YDL156W Nuclear protein with role in transcription, protein quality control physical 1 1 1 Affinity Capture-MS
ATG3 YNR007C E2-like enzyme physical 1 1 1 Affinity Capture-RNA
MYO1 YHR023W Type II myosin heavy chain physical 1 1 1 Affinity Capture-RNA
MYO2 YOR326W Type V myosin motor involved in actin-based transport of cargos physical 1 1 1 Affinity Capture-RNA
NAM8 YHR086W RNA binding protein, component of the U1 snRNP protein physical 1 1 1 Affinity Capture-RNA
GIN4 YDR507C Protein kinase involved in bud growth and assembly of the septin ring physical 1 1 1 Affinity Capture-RNA
NCL1 YBL024W S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase physical 1 1 1 Affinity Capture-RNA
INO80 YGL150C Nucleosome spacing factor physical 1 1 1 Affinity Capture-RNA
NHP10 YDL002C Non-essential INO80 chromatin remodeling complex subunit physical 1 1 1 Affinity Capture-RNA
IES1 YFL013C Subunit of the INO80 chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
HER1 YOR227W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
FAS2 YPL231W Alpha subunit of fatty acid synthetase physical 1 1 1 Affinity Capture-RNA
AHA1 YDR214W Co-chaperone that binds Hsp82p and activates its ATPase activity physical 1 1 1 Affinity Capture-RNA
NIC96 YFR002W Linker nucleoporin component of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
NUP159 YIL115C FG-nucleoporin component of central core of the nuclear pore complex physical 1 1 1 Affinity Capture-RNA
HSP42 YDR171W Small heat shock protein (sHSP) with chaperone activity physical 1 1 1 Affinity Capture-RNA
ORC1 YML065W Largest subunit of the origin recognition complex physical 1 1 1 Affinity Capture-RNA
PAN2 YGL094C Catalytic subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex physical 1 1 1 Affinity Capture-RNA
APM1 YPL259C Mu1-like medium subunit of the AP-1 complex physical 1 1 1 Affinity Capture-RNA
PDB1 YBR221C E1 beta subunit of the pyruvate dehydrogenase (PDH) complex physical 1 1 1 Affinity Capture-RNA
DIG1 YPL049C MAP kinase-responsive inhibitor of the Ste12p transcription factor physical 1 1 1 Affinity Capture-RNA
PFK1 YGR240C Alpha subunit of heterooctameric phosphofructokinase physical 1 1 1 Affinity Capture-RNA
PGK1 YCR012W 3-phosphoglycerate kinase physical 1 1 1 Affinity Capture-RNA
IDH2 YOR136W Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase physical 1 1 1 Affinity Capture-RNA
POL1 YNL102W Catalytic subunit of the DNA polymerase I alpha-primase complex physical 1 1 1 Affinity Capture-RNA
POP2 YNR052C Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation physical 1 1 1 Affinity Capture-RNA
POP7 YBR167C Subunit of RNase MRP, nuclear RNase P and telomerase genetic 1 1 1 Positive Genetic
BLM10 YFL007W Proteasome activator physical 1 1 1 Affinity Capture-RNA
GLE2 YER107C RNA export factor associated with the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
HTA1 YDR225W Histone H2A physical 1 1 1 Affinity Capture-RNA
PRP28 YDR243C Pre-mRNA splicing factor physical 1 1 1 Affinity Capture-RNA
LEA1 YPL213W Component of U2 snRNP complex genetic 1 1 1 Negative Genetic
PRP21 YJL203W Subunit of the SF3a splicing factor complex physical 1 1 1 Affinity Capture-RNA
PRP6 YBR055C Splicing factor physical 1 1 1 Affinity Capture-RNA
LIN1 YHR156C Non-essential component of U5 snRNP physical 1 1 1 Affinity Capture-RNA
PTC3 YBL056W Type 2C protein phosphatase (PP2C) genetic 1 1 1 Negative Genetic
NRD1 YNL251C RNA-binding subunit of Nrd1 complex physical 1 1 1 Affinity Capture-RNA
PUB1 YNL016W Poly (A)+ RNA-binding protein physical 1 1 1 PCA
NAB6 YML117W Putative RNA-binding protein physical 1 1 1 Affinity Capture-RNA
MVD1 YNR043W Mevalonate pyrophosphate decarboxylase physical 1 1 1 Affinity Capture-RNA
NOP14 YDL148C Nucleolar protein physical 1 1 1 Affinity Capture-RNA
PEP4 YPL154C Vacuolar aspartyl protease (proteinase A) physical 1 1 1 Affinity Capture-RNA
GPM1 YKL152C Tetrameric phosphoglycerate mutase physical 1 1 1 Affinity Capture-RNA
FYV8 YGR196C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
MLH2 YLR035C Protein involved in mismatch repair and meiotic recombination physical 1 1 1 Affinity Capture-RNA
CSI1 YMR025W Subunit of the Cop9 signalosome physical 1 1 1 Affinity Capture-RNA
NUM1 YDR150W Protein required for nuclear migration physical 1 1 1 Affinity Capture-RNA
OPI1 YHL020C Transcriptional regulator of a variety of genes physical 1 1 1 Affinity Capture-RNA
PIL1 YGR086C Eisosome core component physical 1 1 1 Affinity Capture-RNA
PGI1 YBR196C Glycolytic enzyme phosphoglucose isomerase physical 1 1 1 Affinity Capture-RNA
NUP120 YKL057C Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
NUP145 YGL092W Essential protein with distinct roles in two nuclear pore subcomplexes physical 1 1 1 Affinity Capture-RNA
NUP84 YDL116W Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
NUP85 YJR042W Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
HOS2 YGL194C Histone deacetylase and subunit of Set3 and Rpd3L complexes physical 1 1 1 Affinity Capture-RNA
CDC25 YLR310C Membrane bound guanine nucleotide exchange factor physical 1 1 1 Affinity Capture-RNA
CDC25 YLR310C Membrane bound guanine nucleotide exchange factor genetic 1 1 1 Negative Genetic
PRP18 YGR006W Splicing factor and component of snRNP U5 physical 1 1 1 Affinity Capture-RNA
BRR1 YPR057W snRNP protein component of spliceosomal snRNPs physical 1 1 1 Affinity Capture-RNA
NAT1 YDL040C Subunit of protein N-terminal acetyltransferase NatA physical 1 1 1 Affinity Capture-RNA
PFK2 YMR205C Beta subunit of heterooctameric phosphofructokinase physical 1 1 1 Affinity Capture-RNA
GCN5 YGR252W Catalytic subunit of ADA and SAGA histone acetyltransferase complexes physical 1 1 1 Affinity Capture-MS
NGG1 YDR176W Subunit of chromatin modifying histone acetyltransferase complexes physical 1 1 1 Affinity Capture-RNA
MLP1 YKR095W Myosin-like protein associated with the nuclear envelope physical 1 1 1 Affinity Capture-RNA
MNN4 YKL201C Putative positive regulator of mannosylphosphate transferase Mnn6p physical 1 1 1 Affinity Capture-RNA
EFB1 YAL003W Translation elongation factor 1 beta physical 1 1 1 Affinity Capture-RNA
MGA2 YIR033W ER membrane protein involved in regulation of OLE1 transcription physical 1 1 1 Affinity Capture-RNA
ATG9 YDL149W Transmembrane protein involved in forming Cvt and autophagic vesicles physical 1 1 1 Affinity Capture-RNA
ATG9 YDL149W Transmembrane protein involved in forming Cvt and autophagic vesicles genetic 1 1 1 Negative Genetic
ECM30 YLR436C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
PEP5 YMR231W Histone E3 ligase, component of CORVET membrane tethering complex physical 1 1 1 Affinity Capture-RNA
DRS2 YAL026C Trans-golgi network aminophospholipid translocase (flippase) genetic 1 1 1 Negative Genetic
FLC2 YAL053W Putative calcium channel involved in calcium release under hypotonic physical 1 1 1 Affinity Capture-RNA
BRE2 YLR015W Subunit of COMPASS (Set1C) complex physical 1 1 1 Affinity Capture-RNA
HEK2 YBL032W RNA binding protein involved in asymmetric localization of ASH1 mRNA physical 1 1 1 Affinity Capture-RNA
PSY4 YBL046W Regulatory subunit of protein phosphatase PP4 physical 1 1 1 Affinity Capture-RNA
BOI1 YBL085W Protein involved in polar growth, functionally redundant with Boi2p physical 1 1 1 Affinity Capture-RNA
DIM1 YPL266W Essential 18S rRNA dimethylase (dimethyladenosine transferase) genetic 1 1 1 Negative Genetic
AIM17 YHL021C Protein of unknown function genetic 1 1 1 Negative Genetic
BNA3 YJL060W Kynurenine aminotransferase physical 1 1 1 Affinity Capture-RNA
LPL1 YOR059C Phospholipase physical 1 1 1 Affinity Capture-RNA
YKU80 YMR106C Subunit of telomeric Ku complex (Yku70p-Yku80p) physical 1 1 1 Affinity Capture-MS
RPN11 YFR004W Metalloprotease subunit of 19S regulatory particle physical 1 1 1 Affinity Capture-MS
YGK3 YOL128C Protein kinase related to mammalian GSK-3 glycogen synthase kinases physical 1 1 1 Affinity Capture-MS
URN1 YPR152C Protein of unknown function containing WW and FF domains physical 1 1 1 Affinity Capture-MS
SPT8 YLR055C Subunit of the SAGA transcriptional regulatory complex physical 1 1 1 Affinity Capture-MS
RBG1 YAL036C Member of the DRG family of GTP-binding proteins physical 1 1 1 Affinity Capture-RNA
RPS8A YBL072C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
YBR012W-A YBR012W-A Retrotransposon TYA Gag gene co-transcribed with TYB Pol physical 1 1 1 Affinity Capture-RNA
RPS11B YBR048W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
RFS1 YBR052C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
TIP1 YBR067C Major cell wall mannoprotein with possible lipase activity physical 1 1 1 Affinity Capture-RNA
TAT1 YBR069C Amino acid transporter for valine, leucine, isoleucine, and tyrosine physical 1 1 1 Affinity Capture-RNA
RPG1 YBR079C eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3) physical 1 1 1 Affinity Capture-RNA
UBC4 YBR082C Ubiquitin-conjugating enzyme (E2) physical 1 1 1 Affinity Capture-RNA
TEC1 YBR083W Transcription factor targeting filamentation genes and Ty1 expression physical 1 1 1 Affinity Capture-RNA
YBR085C-A YBR085C-A Protein of unknown function physical 1 1 1 Affinity Capture-RNA
YBR096W YBR096W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SND3 YBR106W Involved in SRP-independent protein targeting to the ER physical 1 1 1 Affinity Capture-RNA
TEF2 YBR118W Translational elongation factor EF-1 alpha physical 1 1 1 Affinity Capture-RNA
TPS1 YBR126C Synthase subunit of trehalose-6-P synthase/phosphatase complex physical 1 1 1 Affinity Capture-RNA
VMA2 YBR127C Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase physical 1 1 1 Affinity Capture-RNA
VMA2 YBR127C Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase genetic 1 1 1 Negative Genetic
SUP45 YBR143C Polypeptide release factor (eRF1) in translation termination physical 1 1 1 Affinity Capture-RNA
TOS1 YBR162C Covalently-bound cell wall protein of unknown function physical 1 1 1 Affinity Capture-RNA
RPS6B YBR181C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
YPC1 YBR183W Alkaline ceramidase physical 1 1 1 Affinity Capture-RNA
RPS9B YBR189W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
TAF5 YBR198C Subunit (90 kDa) of TFIID and SAGA complexes physical 1 1 1 Affinity Capture-RNA
TAF5 YBR198C Subunit (90 kDa) of TFIID and SAGA complexes genetic 1 1 1 Negative Genetic
SHG1 YBR258C Subunit of the COMPASS (Set1C) complex genetic 1 1 1 Negative Genetic
YBR259W YBR259W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SSH1 YBR283C Subunit of the Ssh1 translocon complex physical 1 1 1 Affinity Capture-RNA
RIM1 YCR028C-A ssDNA-binding protein essential for mitochondrial genome maintenance physical 1 1 1 Affinity Capture-RNA
TUP1 YCR084C General repressor of transcription in complex with Cyc8p physical 1 1 1 Affinity Capture-RNA
RPT2 YDL007W ATPase of the 19S regulatory particle of the 26S proteasome physical 1 1 1 Affinity Capture-RNA
RTK1 YDL025C Putative protein kinase, potentially phosphorylated by Cdc28p physical 1 1 1 Affinity Capture-RNA
RPS29B YDL061C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
SYO1 YDL063C Transport adaptor or symportin physical 1 1 1 Affinity Capture-RNA
RPP1A YDL081C Ribosomal stalk protein P1 alpha physical 1 1 1 Affinity Capture-RNA
RPL13A YDL082W Ribosomal 60S subunit protein L13A physical 1 1 1 Affinity Capture-RNA
RAM1 YDL090C Beta subunit of the CAAX farnesyltransferase (FTase) physical 1 1 1 Affinity Capture-RNA
SRP14 YDL092W Signal recognition particle (SRP) subunit physical 1 1 1 Affinity Capture-RNA
RPN6 YDL097C Essential, non-ATPase regulatory subunit of the 26S proteasome lid physical 1 1 1 Affinity Capture-RNA
QRI1 YDL103C UDP-N-acetylglucosamine pyrophosphorylase physical 1 1 1 Affinity Capture-RNA
TRM3 YDL112W 2'-O-ribose methyltransferase physical 1 1 1 Affinity Capture-RNA
YFH1 YDL120W Mitochondrial matrix iron chaperone physical 1 1 1 Affinity Capture-RNA
VCX1 YDL128W Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity physical 1 1 1 Affinity Capture-RNA
RPL41B YDL133C-A Ribosomal 60S subunit protein L41B physical 1 1 1 Affinity Capture-RNA
RPO21 YDL140C RNA polymerase II largest subunit B220 physical 1 1 1 Affinity Capture-RNA
VMA1 YDL185W Subunit A of the V1 peripheral membrane domain of V-ATPase genetic 1 1 1 Negative Genetic
RPL35A YDL191W Ribosomal 60S subunit protein L35A physical 1 1 1 Affinity Capture-RNA
SEC31 YDL195W Component of the Sec13p-Sec31p complex of the COPII vesicle coat physical 1 1 1 Affinity Capture-RNA
SOK1 YDR006C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RPL4B YDR012W Ribosomal 60S subunit protein L4B physical 1 1 1 Affinity Capture-RNA
SES1 YDR023W Cytosolic seryl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
RPS13 YDR064W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
SNF11 YDR073W Subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
SED1 YDR077W Major stress-induced structural GPI-cell wall glycoprotein physical 1 1 1 Affinity Capture-RNA
STB3 YDR169C Ribosomal RNA processing element (RRPE)-binding protein physical 1 1 1 Affinity Capture-RNA
SND1 YDR186C Protein involved in SRP-independent targeting of substrates to the ER physical 1 1 1 Affinity Capture-RNA
SLY1 YDR189W Hydrophilic protein involved in ER/Golgi vesicle trafficking physical 1 1 1 Affinity Capture-RNA
SLY1 YDR189W Hydrophilic protein involved in ER/Golgi vesicle trafficking genetic 1 1 1 Negative Genetic
YDR222W YDR222W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RTN1 YDR233C Reticulon protein physical 1 1 1 Affinity Capture-RNA
RKM4 YDR257C Ribosomal lysine methyltransferase physical 1 1 1 Affinity Capture-RNA
SSD1 YDR293C Translational repressor physical 1 1 1 Affinity Capture-RNA
RQC1 YDR333C Component of the ribosome quality control complex (RQC) physical 1 1 1 Affinity Capture-RNA
SDH6 YDR379C-A Mitochondrial protein involved in assembly of succinate dehydrogenase physical 1 1 1 Affinity Capture-RNA
RGA2 YDR379W GTPase-activating protein for polarity-establishment protein Cdc42p physical 1 1 1 Affinity Capture-RNA
RPP2B YDR382W Ribosomal protein P2 beta physical 1 1 1 Affinity Capture-RNA
RVS167 YDR388W Calmodulin-binding actin-associated protein physical 1 1 1 Affinity Capture-RNA
YDR391C YDR391C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
TRS120 YDR407C Component of transport protein particle (TRAPP) complex II physical 1 1 1 Affinity Capture-RNA
TIF35 YDR429C eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3) physical 1 1 1 Affinity Capture-RNA
RPS17B YDR447C Ribosomal protein 51 (rp51) of the small (40s) subunit physical 1 1 1 Affinity Capture-RNA
RPS18A YDR450W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
UGO1 YDR470C Outer membrane component of the mitochondrial fusion machinery physical 1 1 1 Affinity Capture-RNA
QCR7 YDR529C Subunit 7 of ubiquinol cytochrome-c reductase (Complex III) physical 1 1 1 Affinity Capture-RNA
RIP1 YEL024W Ubiquinol-cytochrome-c reductase physical 1 1 1 Affinity Capture-RNA
UTR2 YEL040W Chitin transglycosylase physical 1 1 1 Affinity Capture-RNA
SPC25 YER018C Component of the kinetochore-associated Ndc80 complex physical 1 1 1 Affinity Capture-RNA
YPT31 YER031C Rab family GTPase physical 1 1 1 Affinity Capture-RNA
RNR1 YER070W Major isoform of large subunit of ribonucleotide-diphosphate reductase physical 1 1 1 Affinity Capture-RNA
VTC1 YER072W Regulatory subunit of the vacuolar transporter chaperone (VTC) complex physical 1 1 1 Affinity Capture-RNA
RPS24A YER074W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
YER076C YER076C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RPS8B YER102W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
STE2 YFL026W Receptor for alpha-factor pheromone physical 1 1 1 Affinity Capture-RNA
TUB2 YFL037W Beta-tubulin physical 1 1 1 Affinity Capture-RNA
QCR6 YFR033C Subunit 6 of the ubiquinol cytochrome-c reductase complex physical 1 1 1 Affinity Capture-RNA
SAP155 YFR040W Protein required for function of the Sit4p protein phosphatase physical 1 1 1 Affinity Capture-RNA
RPL24A YGL031C Ribosomal 60S subunit protein L24A physical 1 1 1 Affinity Capture-RNA
TYW3 YGL050W tRNA methyltransferase required for synthesis of wybutosine physical 1 1 1 Affinity Capture-RNA
SGF73 YGL066W Subunit of DUBm module of SAGA and SLIK physical 1 1 1 Affinity Capture-RNA
RPL7A YGL076C Ribosomal 60S subunit protein L7A physical 1 1 1 Affinity Capture-RNA
SEH1 YGL100W Subunit of the Nup84 nuclear pore and SEACAT subcomplexes physical 1 1 1 Affinity Capture-RNA
YGK1 YGL101W 5'-deoxynucleotidase physical 1 1 1 Affinity Capture-RNA
SEC27 YGL137W Essential beta'-coat protein of the COPI coatomer physical 1 1 1 Affinity Capture-RNA
RPL9A YGL147C Ribosomal 60S subunit protein L9A physical 1 1 1 Affinity Capture-RNA
VRG4 YGL225W Golgi GDP-mannose transporter physical 1 1 1 Affinity Capture-RNA
SHE10 YGL228W Protein involved in outer spore wall assembly physical 1 1 1 Affinity Capture-RNA
RMR1 YGL250W Protein required for meiotic recombination and gene conversion physical 1 1 1 Affinity Capture-RNA
ZRT1 YGL255W High-affinity zinc transporter of the plasma membrane physical 1 1 1 Affinity Capture-RNA
SNU71 YGR013W Component of U1 snRNP required for mRNA splicing via spliceosome physical 1 1 1 Affinity Capture-RNA
RPS25A YGR027C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
RPL26B YGR034W Ribosomal 60S subunit protein L26B physical 1 1 1 Affinity Capture-RNA
YGR111W YGR111W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SPT6 YGR116W Nucleosome remodeling protein physical 1 1 1 Affinity Capture-RNA
RPS23A YGR118W Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
SKN1 YGR143W Protein involved in sphingolipid biosynthesis physical 1 1 1 Affinity Capture-RNA
RPL24B YGR148C Ribosomal 60S subunit protein L24B physical 1 1 1 Affinity Capture-RNA
TYS1 YGR185C Cytoplasmic tyrosyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
YPP1 YGR198W Cargo-transport protein involved in endocytosis physical 1 1 1 Affinity Capture-RNA
YCH1 YGR203W Phosphatase with sequence similarity to Mih1p physical 1 1 1 Affinity Capture-RNA
YGR240C-A YGR240C-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SOL4 YGR248W 6-phosphogluconolactonase physical 1 1 1 Affinity Capture-RNA
TNA1 YGR260W High affinity nicotinic acid plasma membrane permease physical 1 1 1 Affinity Capture-RNA
SCW4 YGR279C Cell wall protein with similarity to glucanases physical 1 1 1 Affinity Capture-RNA
YOR1 YGR281W Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
RPL14B YHL001W Ribosomal 60S subunit protein L14B physical 1 1 1 Affinity Capture-RNA
RPS20 YHL015W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
SNF6 YHL025W Subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
QCR10 YHR001W-A Subunit of the ubiqunol-cytochrome c oxidoreductase complex physical 1 1 1 Affinity Capture-RNA
RPL27A YHR010W Ribosomal 60S subunit protein L27A physical 1 1 1 Affinity Capture-RNA
YSC84 YHR016C Actin-binding protein physical 1 1 1 Affinity Capture-RNA
RPS27B YHR021C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
VMA16 YHR026W Subunit c'' of the vacuolar ATPase physical 1 1 1 Affinity Capture-RNA
SLT2 YHR030C Serine/threonine MAP kinase physical 1 1 1 Affinity Capture-RNA
SLT2 YHR030C Serine/threonine MAP kinase genetic 1 1 1 Dosage Growth Defect
PUT2 YHR037W Delta-1-pyrroline-5-carboxylate dehydrogenase physical 1 1 1 Affinity Capture-RNA
STE12 YHR084W Transcription factor that is activated by a MAPK signaling cascade physical 1 1 1 Affinity Capture-RNA
RTC3 YHR087W Protein of unknown function involved in RNA metabolism physical 1 1 1 Affinity Capture-RNA
SVP26 YHR181W ER exit adaptor for Golgi mannosyltransferases physical 1 1 1 Affinity Capture-RNA
RIX1 YHR197W Component of the Rix1 complex and possibly pre-replicative complexes physical 1 1 1 Affinity Capture-RNA
RPS4B YHR203C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
URM1 YIL008W Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs physical 1 1 1 Affinity Capture-RNA
RPL2B YIL018W Ribosomal 60S subunit protein L2B physical 1 1 1 Affinity Capture-RNA
SSM4 YIL030C Membrane-embedded ubiquitin-protein ligase and retrotranslocase physical 1 1 1 Affinity Capture-RNA
UBP7 YIL156W Ubiquitin-specific protease that cleaves ubiquitin-protein fusions physical 1 1 1 Affinity Capture-RNA
YIR021W-A YIR021W-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SEC11 YIR022W 18kDa catalytic subunit of the Signal Peptidase Complex (SPC) physical 1 1 1 Affinity Capture-RNA
TPH3 YJL016W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RNR2 YJL026W Ribonucleotide-diphosphate reductase (RNR), small subunit physical 1 1 1 Affinity Capture-RNA
SDH9 YJL045W Minor succinate dehydrogenase isozyme physical 1 1 1 Affinity Capture-RNA
TDH1 YJL052W Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1 physical 1 1 1 Affinity Capture-RNA
YJL070C YJL070C Putative metallo-dependent hydrolase superfamily protein physical 1 1 1 Affinity Capture-RNA
SCP160 YJL080C Essential RNA-binding G protein effector of mating response pathway physical 1 1 1 Affinity Capture-RNA
URA2 YJL130C Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase physical 1 1 1 Affinity Capture-RNA
RPS21B YJL136C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
TIF2 YJL138C Translation initiation factor eIF4A physical 1 1 1 Affinity Capture-RNA
YAK1 YJL141C Serine-threonine protein kinase physical 1 1 1 Affinity Capture-RNA
SFH5 YJL145W Unusual phosphatidylinositol transfer protein (PITP) that binds heme physical 1 1 1 Affinity Capture-RNA
VPS35 YJL154C Endosomal subunit of membrane-associated retromer complex physical 1 1 1 Affinity Capture-RNA
QCR8 YJL166W Subunit 8 of ubiquinol cytochrome-c reductase (Complex III) physical 1 1 1 Affinity Capture-RNA
RPL39 YJL189W Ribosomal 60S subunit protein L39 physical 1 1 1 Affinity Capture-RNA
TDH2 YJR009C Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2 physical 1 1 1 Affinity Capture-RNA
YJR015W YJR015W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RAD26 YJR035W Protein involved in transcription-coupled nucleotide excision repair physical 1 1 1 Affinity Capture-RNA
RPL43B YJR094W-A Ribosomal 60S subunit protein L43B physical 1 1 1 Affinity Capture-RNA
RPS5 YJR123W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
RSF2 YJR127C Zinc-finger protein physical 1 1 1 Affinity Capture-RNA
STR2 YJR130C Cystathionine gamma-synthase, converts cysteine into cystathionine physical 1 1 1 Affinity Capture-RNA
STR2 YJR130C Cystathionine gamma-synthase, converts cysteine into cystathionine genetic 1 1 1 Negative Genetic
YJR142W YJR142W 8-oxo-dGTP diphosphatase of the Nudix hydrolase family physical 1 1 1 Affinity Capture-RNA
RPS4A YJR145C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
TCD2 YKL027W tRNA threonylcarbamoyladenosine dehydratase physical 1 1 1 Affinity Capture-RNA
TFA1 YKL028W TFIIE large subunit physical 1 1 1 Affinity Capture-RNA
TOA2 YKL058W TFIIA small subunit physical 1 1 1 Affinity Capture-RNA
TEF4 YKL081W Gamma subunit of translational elongation factor eEF1B physical 1 1 1 Affinity Capture-RNA
SBA1 YKL117W Co-chaperone that binds and regulates Hsp90 family chaperones physical 1 1 1 Affinity Capture-RNA
SDH3 YKL141W Subunit of succinate dehydrogenase and of TIM22 translocase physical 1 1 1 Affinity Capture-RNA
SDH1 YKL148C Flavoprotein subunit of succinate dehydrogenase physical 1 1 1 Affinity Capture-RNA
STE3 YKL178C Receptor for a factor pheromone physical 1 1 1 Affinity Capture-RNA
RPL17A YKL180W Ribosomal 60S subunit protein L17A physical 1 1 1 Affinity Capture-RNA
UBA1 YKL210W Ubiquitin activating enzyme (E1) physical 1 1 1 Affinity Capture-RNA
RSC4 YKR008W Component of the RSC chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
YKR041W YKR041W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
UTH1 YKR042W Mitochondrial inner membrane protein physical 1 1 1 Affinity Capture-RNA
RPS21A YKR057W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
SSA2 YLL024C HSP70 family ATP-binding protein physical 1 1 1 Affinity Capture-RNA
YBT1 YLL048C Transporter of the ATP-binding cassette (ABC) family physical 1 1 1 Affinity Capture-RNA
SNF7 YLR025W One of four subunits of the ESCRT-III complex physical 1 1 1 Affinity Capture-RNA
RPL15A YLR029C Ribosomal 60S subunit protein L15A physical 1 1 1 Affinity Capture-RNA
YLR035C-A YLR035C-A Retrotransposon TYA Gag and TYB Pol genes physical 1 1 1 Affinity Capture-RNA
YLR046C YLR046C Putative membrane protein physical 1 1 1 Affinity Capture-RNA
RPS0B YLR048W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
REX2 YLR059C 3'-5' RNA exonuclease physical 1 1 1 Affinity Capture-RNA
RPL22A YLR061W Ribosomal 60S subunit protein L22A physical 1 1 1 Affinity Capture-RNA
RPL10 YLR075W Ribosomal 60S subunit protein L10 physical 1 1 1 Affinity Capture-RNA
YPS1 YLR120C Aspartic protease physical 1 1 1 Affinity Capture-RNA
ZRT2 YLR130C Low-affinity zinc transporter of the plasma membrane physical 1 1 1 Affinity Capture-RNA
YLR146W-A YLR146W-A Protein of unknown function physical 1 1 1 Affinity Capture-RNA
STM1 YLR150W Protein required for optimal translation under nutrient stress physical 1 1 1 Affinity Capture-RNA
RPS31 YLR167W Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin physical 1 1 1 Affinity Capture-RNA
SAM1 YLR180W S-adenosylmethionine synthetase physical 1 1 1 Affinity Capture-RNA
YEF3 YLR249W Translation elongation factor 3 physical 1 1 1 Affinity Capture-RNA
SYM1 YLR251W Protein required for ethanol metabolism physical 1 1 1 Affinity Capture-RNA
YLR257W YLR257W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RPS28B YLR264W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
YLR278C YLR278C Zinc-cluster protein physical 1 1 1 Affinity Capture-RNA
RPS30A YLR287C-A Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
RPS25B YLR333C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
VID22 YLR373C G-quadruplex (G4) DNA binding protein physical 1 1 1 Affinity Capture-RNA
SEC61 YLR378C Conserved ER protein translocation channel physical 1 1 1 Affinity Capture-RNA
RPN13 YLR421C Subunit of the 19S regulatory particle of the 26S proteasome lid physical 1 1 1 Affinity Capture-RNA
RPS1A YLR441C Ribosomal protein of the small (40S) subunit physical 1 1 1 Affinity Capture-RNA
RPS17A YML024W Ribosomal protein 51 (rp51) of the small (40s) subunit physical 1 1 1 Affinity Capture-RNA
RPL6A YML073C Ribosomal 60S subunit protein L6A physical 1 1 1 Affinity Capture-RNA
TUB1 YML085C Alpha-tubulin physical 1 1 1 Affinity Capture-RNA
TSL1 YML100W Large subunit of trehalose 6-phosphate synthase/phosphatase complex physical 1 1 1 Affinity Capture-RNA
URA5 YML106W Major orotate phosphoribosyltransferase (OPRTase) isozyme physical 1 1 1 Affinity Capture-RNA
TAF4 YMR005W TFIID subunit (48 kDa) physical 1 1 1 Affinity Capture-RNA
TVP18 YMR071C Integral membrane protein physical 1 1 1 Affinity Capture-RNA
SEC14 YMR079W Phosphatidylinositol/phosphatidylcholine transfer protein physical 1 1 1 Affinity Capture-RNA
TPP1 YMR156C DNA 3'-phosphatase physical 1 1 1 Affinity Capture-RNA
SCJ1 YMR214W One of several homologs of bacterial chaperone DnaJ physical 1 1 1 Affinity Capture-RNA
RPS10B YMR230W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
YHM2 YMR241W Citrate and oxoglutarate carrier protein physical 1 1 1 Affinity Capture-RNA
RPL20A YMR242C Ribosomal 60S subunit protein L20A physical 1 1 1 Affinity Capture-RNA
TIF11 YMR260C Translation initiation factor eIF1A physical 1 1 1 Affinity Capture-RNA
SIW14 YNL032W Inositol phosphatase involved in inositol pyrophosphate metabolism physical 1 1 1 Affinity Capture-RNA
YNL040W YNL040W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
VAC7 YNL054W Integral vacuolar membrane protein physical 1 1 1 Affinity Capture-RNA
YNL058C YNL058C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YDJ1 YNL064C Type I HSP40 co-chaperone physical 1 1 1 Affinity Capture-RNA
RPL9B YNL067W Ribosomal 60S subunit protein L9B physical 1 1 1 Affinity Capture-RNA
RPL16B YNL069C Ribosomal 60S subunit protein L16B physical 1 1 1 Affinity Capture-RNA
RPS7B YNL096C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
RPL42A YNL162W Ribosomal 60S subunit protein L42A physical 1 1 1 Affinity Capture-RNA
RPS3 YNL178W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
UBP10 YNL186W Ubiquitin-specific protease, deubiquitinates Ub-protein moieties physical 1 1 1 Affinity Capture-RNA
YNL190W YNL190W Hydrophilin essential in desiccation-rehydration process physical 1 1 1 Affinity Capture-RNA
YNL208W YNL208W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SLA2 YNL243W Adaptor protein that links actin to clathrin and endocytosis physical 1 1 1 Affinity Capture-RNA
SLA2 YNL243W Adaptor protein that links actin to clathrin and endocytosis genetic 1 1 1 Negative Genetic
YNL284C-B YNL284C-B Retrotransposon TYA Gag and TYB Pol genes physical 1 1 1 Affinity Capture-RNA
TOS6 YNL300W Glycosylphosphatidylinositol-dependent cell wall protein physical 1 1 1 Affinity Capture-RNA
YNR014W YNR014W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SIN3 YOL004W Component of both the Rpd3S and Rpd3L histone deacetylase complexes physical 1 1 1 Affinity Capture-RNA
YOL014W YOL014W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
TOS7 YOL019W Protein involved in secretion and cell wall organization physical 1 1 1 Affinity Capture-RNA
YOL036W YOL036W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RPS15 YOL040C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
WSC3 YOL105C Sensor-transducer of the stress-activated PKC1-MPK1 signaling pathway physical 1 1 1 Affinity Capture-RNA
ZEO1 YOL109W Peripheral membrane protein of the plasma membrane physical 1 1 1 Affinity Capture-RNA
RIB4 YOL143C Lumazine synthase (DMRL synthase) physical 1 1 1 Affinity Capture-RNA
ZPS1 YOL154W Putative GPI-anchored protein physical 1 1 1 Affinity Capture-RNA
SGT2 YOR007C Glutamine-rich cytoplasmic cochaperone physical 1 1 1 Affinity Capture-RNA
STI1 YOR027W Evolutionarily-conserved Hsp90 cochaperone physical 1 1 1 Affinity Capture-RNA
VPS5 YOR069W Nexin-1 homolog physical 1 1 1 Affinity Capture-RNA
YOR097C YOR097C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RGS2 YOR107W Negative regulator of glucose-induced cAMP signaling physical 1 1 1 Affinity Capture-RNA
RPO31 YOR116C RNA polymerase III largest subunit C160 physical 1 1 1 Affinity Capture-RNA
SMP3 YOR149C Alpha 1,2-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
RPS28A YOR167C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
RPS30B YOR182C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
WTM2 YOR229W Transcriptional modulator physical 1 1 1 Affinity Capture-RNA
WTM1 YOR230W Transcriptional modulator physical 1 1 1 Affinity Capture-RNA
WTM1 YOR230W Transcriptional modulator genetic 1 1 1 Negative Genetic
RPL33B YOR234C Ribosomal 60S subunit protein L33B physical 1 1 1 Affinity Capture-RNA
YOR238W YOR238W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SRL1 YOR247W Mannoprotein that exhibits a tight association with the cell wall physical 1 1 1 Affinity Capture-RNA
VPH1 YOR270C Subunit a of the vacuolar-ATPase V0 domain physical 1 1 1 Affinity Capture-RNA
RPS10A YOR293W Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
UAF30 YOR295W Subunit of UAF (upstream activation factor) complex physical 1 1 1 Affinity Capture-RNA
RRG7 YOR305W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
VTS1 YOR359W Flap-structured DNA-binding and RNA-binding protein physical 1 1 1 Affinity Capture-RNA
SCP1 YOR367W Component of yeast cortical actin cytoskeleton physical 1 1 1 Affinity Capture-RNA
RPS12 YOR369C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
RDR1 YOR380W Transcriptional repressor involved in regulating multidrug resistance physical 1 1 1 Affinity Capture-RNA
RRP12 YPL012W Protein required for export of the ribosomal subunits physical 1 1 1 Affinity Capture-RNA
SWI1 YPL016W Subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
VTC3 YPL019C Regulatory subunit of the vacuolar transporter chaperone (VTC) complex physical 1 1 1 Affinity Capture-RNA
SEC16 YPL085W COPII vesicle coat protein required for ER transport vesicle budding physical 1 1 1 Affinity Capture-RNA
RLM1 YPL089C MADS-box transcription factor physical 1 1 1 Affinity Capture-RNA
RPS6A YPL090C Protein component of the small (40S) ribosomal subunit physical 1 1 1 Affinity Capture-RNA
SVS1 YPL163C Cell wall and vacuolar protein physical 1 1 1 Affinity Capture-RNA
RPL7B YPL198W Ribosomal 60S subunit protein L7B physical 1 1 1 Affinity Capture-RNA
TPK2 YPL203W cAMP-dependent protein kinase catalytic subunit physical 1 1 1 Affinity Capture-RNA
RVB2 YPL235W ATP-dependent DNA helicase, also known as reptin physical 1 1 1 Affinity Capture-RNA
SAM4 YPL273W S-adenosylmethionine-homocysteine methyltransferase physical 1 1 1 Affinity Capture-RNA
SAM3 YPL274W High-affinity S-adenosylmethionine permease physical 1 1 1 Affinity Capture-RNA
TIF5 YPR041W Translation initiation factor eIF5 physical 1 1 1 Affinity Capture-RNA
RPL43A YPR043W Ribosomal 60S subunit protein L43A physical 1 1 1 Affinity Capture-RNA
YPR063C YPR063C ER-localized protein of unknown function physical 1 1 1 Affinity Capture-RNA
ROX1 YPR065W Heme-dependent repressor of hypoxic genes physical 1 1 1 Affinity Capture-RNA
TEF1 YPR080W Translational elongation factor EF-1 alpha physical 1 1 1 Affinity Capture-RNA
YPR089W YPR089W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SEC23 YPR181C GTPase-activating protein, stimulates the GTPase activity of Sar1p physical 1 1 1 Affinity Capture-RNA
SPT10 YJL127C Histone H3 acetylase with a role in transcriptional regulation physical 1 1 1 Affinity Capture-MS
SPT21 YMR179W Protein with a role in transcriptional silencing physical 1 1 1 Affinity Capture-MS
SLM5 YCR024C Mitochondrial asparaginyl-tRNA synthetase physical 1 1 1 Affinity Capture-RNA
YGL235W YGL235W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YIA6 YIL006W Mitochondrial NAD+ transporter physical 1 1 1 Affinity Capture-RNA
YNL184C YNL184C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
TIM12 YBR091C Essential protein of the inner mitochondrial membrane physical 1 1 1 Affinity Capture-RNA
THP2 YHR167W Subunit of the THO and TREX complexes physical 1 1 1 Affinity Capture-RNA
YML083C YML083C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ZIM17 YNL310C Protein co-chaperone with a zinc finger motif physical 1 1 1 Affinity Capture-RNA
YDR114C YDR114C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SHH3 YMR118C Putative mitochondrial inner membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
TDA11 YHR159W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
TOS2 YGR221C Protein involved in localization of Cdc24p to the site of bud growth physical 1 1 1 Affinity Capture-RNA
SUL2 YLR092W High affinity sulfate permease physical 1 1 1 Affinity Capture-RNA
VHT1 YGR065C High-affinity plasma membrane H+-biotin (vitamin H) symporter physical 1 1 1 Affinity Capture-RNA
TFC7 YOR110W RNA pol III transcription initiation factor complex (TFIIIC) subunit physical 1 1 1 Affinity Capture-RNA
RPB2 YOR151C RNA polymerase II second largest subunit B150 physical 1 1 1 Affinity Capture-RNA
YPL039W YPL039W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RCL1 YOL010W Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis physical 1 1 1 Affinity Capture-RNA
UBP16 YPL072W Deubiquitinating enzyme anchored to the outer mitochondrial membrane physical 1 1 1 Affinity Capture-RNA
SMC1 YFL008W Subunit of the multiprotein cohesin complex physical 1 1 1 Affinity Capture-RNA
TDP1 YBR223C Tyrosyl-DNA phosphodiesterase I physical 1 1 1 Affinity Capture-RNA
SLF1 YDR515W RNA binding protein that associates with polysomes physical 1 1 1 Affinity Capture-RNA
YBR284W YBR284W Putative metallo-dependent hydrolase superfamily protein physical 1 1 1 Affinity Capture-RNA
UFD1 YGR048W Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase physical 1 1 1 Affinity Capture-RNA
SAS5 YOR213C Subunit of the SAS complex (Sas2p, Sas4p, Sas5p) physical 1 1 1 Affinity Capture-RNA
SLI1 YGR212W N-acetyltransferase physical 1 1 1 Affinity Capture-RNA
SKI2 YLR398C Ski complex component and putative RNA helicase physical 1 1 1 Affinity Capture-RNA
SFG1 YOR315W Nuclear protein putative transcription factor physical 1 1 1 Affinity Capture-RNA
YBL008W-A YBL008W-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SMC3 YJL074C Subunit of the multiprotein cohesin complex physical 1 1 1 Affinity Capture-RNA
SHE2 YKL130C RNA-binding protein that binds specific mRNAs and interacts with She3p physical 1 1 1 Affinity Capture-RNA
UBA3 YPR066W Protein that activates Rub1p (NEDD8) before neddylation physical 1 1 1 Affinity Capture-RNA
SLH1 YGR271W Subunit of ribosome-associated quality control trigger complex (RQT) physical 1 1 1 Affinity Capture-RNA
RPF2 YKR081C Essential protein involved in rRNA maturation and ribosomal assembly physical 1 1 1 Affinity Capture-RNA
ROG3 YFR022W Alpha-arrestin involved in ubiquitin-dependent endocytosis physical 1 1 1 Affinity Capture-RNA
RTA1 YGR213C Protein involved in 7-aminocholesterol resistance physical 1 1 1 Affinity Capture-RNA
SSY5 YJL156C Serine protease of SPS plasma membrane amino acid sensor system physical 1 1 1 Affinity Capture-RNA
SGD1 YLR336C Essential nuclear protein physical 1 1 1 Affinity Capture-RNA
UPS2 YLR168C Mitochondrial intermembrane space protein physical 1 1 1 Affinity Capture-RNA
SAT4 YCR008W Ser/Thr protein kinase involved in salt tolerance, nutrient response physical 1 1 1 Affinity Capture-RNA
SET1 YHR119W Histone methyltransferase, subunit of the COMPASS (Set1C) complex physical 1 1 1 Affinity Capture-RNA
TBS1 YBR150C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
YLL054C YLL054C Putative protein of unknown function with similarity to Pip2p physical 1 1 1 Affinity Capture-RNA
TAF2 YCR042C TFIID subunit (150 kDa) physical 1 1 1 Affinity Capture-RNA
SPB1 YCL054W AdoMet-dependent methyltransferase physical 1 1 1 Affinity Capture-RNA
REH1 YLR387C Cytoplasmic 60S subunit biogenesis factor physical 1 1 1 Affinity Capture-RNA
TRZ1 YKR079C tRNA 3'-end processing endonuclease tRNase Z physical 1 1 1 Affinity Capture-RNA
UTP22 YGR090W Component of the small-subunit processome physical 1 1 1 Affinity Capture-RNA
YDR124W YDR124W Mitochondrial protein of unknown function physical 1 1 1 Affinity Capture-RNA
SLM3 YDL033C tRNA-specific 2-thiouridylase physical 1 1 1 Affinity Capture-RNA
RSC58 YLR033W Component of the RSC chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
RBH1 YJL181W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
UTP18 YJL069C Small-subunit processome protein involved in pre-18S rRNA maturation physical 1 1 1 Affinity Capture-RNA
SOK2 YMR016C Nuclear protein that negatively regulates pseudohyphal differentiation physical 1 1 1 Affinity Capture-RNA
YNL143C YNL143C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
TOF1 YNL273W Subunit of a replication-pausing checkpoint complex physical 1 1 1 Affinity Capture-RNA
RIA1 YNL163C Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis physical 1 1 1 Affinity Capture-RNA
UTP25 YIL091C Nucleolar protein physical 1 1 1 Affinity Capture-RNA
UTP14 YML093W Subunit of U3-containing Small Subunit (SSU) processome complex physical 1 1 1 Affinity Capture-RNA
VPS41 YDR080W Subunit of the HOPS endocytic tethering complex physical 1 1 1 Affinity Capture-RNA
YEL1 YBL060W Guanine nucleotide exchange factor specific for Arf3p physical 1 1 1 Affinity Capture-RNA
TFB4 YPR056W Subunit of TFIIH complex physical 1 1 1 Affinity Capture-RNA
YNG2 YHR090C Subunit of NuA4, an essential histone acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
STE4 YOR212W G protein beta subunit physical 1 1 1 Affinity Capture-RNA
SIF2 YBR103W WD40 repeat-containing subunit of Set3C histone deacetylase complex physical 1 1 1 Affinity Capture-RNA
RRP9 YPR137W Protein involved in pre-rRNA processing physical 1 1 1 Affinity Capture-RNA
SSF2 YDR312W Protein required for ribosomal large subunit maturation physical 1 1 1 Affinity Capture-RNA
YNL011C YNL011C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SSK2 YNR031C MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway physical 1 1 1 Affinity Capture-RNA
RPA190 YOR341W RNA polymerase I largest subunit A190 physical 1 1 1 Affinity Capture-RNA
SPT7 YBR081C Subunit of the SAGA transcriptional regulatory complex physical 1 1 1 Affinity Capture-RNA
SMC5 YOL034W Subunit of the SMC5-SMC6 complex physical 1 1 1 Affinity Capture-RNA
YTA6 YPL074W Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family physical 1 1 1 Affinity Capture-RNA
UBR2 YLR024C Cytoplasmic ubiquitin-protein ligase (E3) physical 1 1 1 Affinity Capture-RNA
SNU114 YKL173W GTPase component of U5 snRNP involved in mRNA splicing via spliceosome physical 1 1 1 Affinity Capture-RNA
UBS1 YBR165W Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p physical 1 1 1 Affinity Capture-RNA
UTP11 YKL099C Subunit of U3-containing Small Subunit (SSU) processome complex physical 1 1 1 Affinity Capture-RNA
RTF1 YGL244W Subunit of RNAPII-associated chromatin remodeling Paf1 complex physical 1 1 1 Affinity Capture-RNA
SWP82 YFL049W Member of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
SVF1 YDR346C Protein with a potential role in cell survival pathways physical 1 1 1 Affinity Capture-RNA
YKL068W-A YKL068W-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SRF1 YDL133W Regulator of phospholipase D (Spo14p) physical 1 1 1 Affinity Capture-RNA
RSA3 YLR221C Protein with a likely role in ribosomal maturation physical 1 1 1 Affinity Capture-RNA
UFD4 YKL010C Ubiquitin-protein ligase (E3) physical 1 1 1 Affinity Capture-RNA
TRK1 YJL129C Component of the Trk1p-Trk2p potassium transport system physical 1 1 1 Affinity Capture-RNA
RAD5 YLR032W DNA helicase/Ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
RRP14 YKL082C Essential protein, constituent of 66S pre-ribosomal particles physical 1 1 1 Affinity Capture-RNA
YJL047C-A YJL047C-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YJL047C-A YJL047C-A Putative protein of unknown function genetic 1 1 1 Negative Genetic
SLD2 YKL108W Single-stranded DNA origin-binding and annealing protein physical 1 1 1 Affinity Capture-RNA
SGF11 YPL047W Integral subunit of SAGA histone acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
RGP1 YDR137W Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) physical 1 1 1 Affinity Capture-RNA
RGP1 YDR137W Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p) genetic 1 1 1 Positive Genetic
RIC1 YLR039C Protein involved in retrograde transport to the cis-Golgi network physical 1 1 1 Affinity Capture-RNA
SDD4 YPR022C Putative transcription factor, as suggested by computational analysis physical 1 1 1 Affinity Capture-RNA
RPN7 YPR108W Essential non-ATPase regulatory subunit of the 26S proteasome physical 1 1 1 Affinity Capture-RNA
SET2 YJL168C Histone methyltransferase with a role in transcriptional elongation physical 1 1 1 Affinity Capture-RNA
SEC10 YLR166C Essential 100kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
TSC11 YER093C Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p) physical 1 1 1 Affinity Capture-RNA
SNT1 YCR033W Set3C histone deacetylase scaffold physical 1 1 1 Affinity Capture-RNA
SMC4 YLR086W Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
RGA1 YOR127W GTPase-activating protein for polarity-regulator Cdc42p (RhoGAP) physical 1 1 1 Affinity Capture-RNA
VPS9 YML097C Guanine nucleotide exchange factor (GEF) and ubiquitin receptor physical 1 1 1 Affinity Capture-RNA
SNF2 YOR290C Catalytic subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
YKR005C YKR005C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SPC110 YDR356W Inner plaque spindle pole body (SPB) component physical 1 1 1 Affinity Capture-RNA
VIK1 YPL253C Protein that forms a kinesin-14 heterodimeric motor with Kar3p physical 1 1 1 Affinity Capture-RNA
TAM41 YGR046W Mitochondrial phosphatidate cytidylyltransferase (CDP-DAG synthase) physical 1 1 1 Affinity Capture-RNA
SRY1 YKL218C 3-hydroxyaspartate dehydratase physical 1 1 1 Affinity Capture-RNA
YAP5 YIR018W Basic leucine zipper (bZIP) iron-sensing transcription factor physical 1 1 1 Affinity Capture-RNA
RET1 YOR207C Second-largest subunit of RNA polymerase III physical 1 1 1 Affinity Capture-RNA
ROM2 YLR371W Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p physical 1 1 1 Affinity Capture-RNA
SEC9 YGR009C t-SNARE protein required for secretory vesicle-plasma membrane fusion physical 1 1 1 Affinity Capture-RNA
RIE1 YGR250C RNA binding protein and negative regulator of START physical 1 1 1 Affinity Capture-RNA
YCK3 YER123W Palmitoylated vacuolar membrane-localized casein kinase I isoform physical 1 1 1 Affinity Capture-RNA
RMD5 YDR255C Component of GID Complex that confers ubiquitin ligase (U3) activity physical 1 1 1 Affinity Capture-RNA
TAF10 YDR167W Subunit (145 kDa) of TFIID and SAGA complexes physical 1 1 1 Affinity Capture-RNA
ROX3 YBL093C Subunit of the RNA polymerase II mediator complex physical 1 1 1 Affinity Capture-RNA
YOR283W YOR283W Phosphatase with a broad substrate specificity physical 1 1 1 Affinity Capture-RNA
RTT103 YDR289C Protein involved in transcription termination by RNA polymerase II physical 1 1 1 Affinity Capture-RNA
YNL194C YNL194C Integral membrane protein physical 1 1 1 Affinity Capture-RNA
SRO7 YPR032W Effector of Rab GTPase Sec4p physical 1 1 1 Affinity Capture-RNA
SBE2 YDR351W Protein required for bud growth physical 1 1 1 Affinity Capture-RNA
THP1 YOL072W Nuclear pore-associated protein physical 1 1 1 Affinity Capture-RNA
TRS65 YGR166W Component of transport protein particle (TRAPP) complex II physical 1 1 1 Affinity Capture-RNA
YDR338C YDR338C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YLR297W YLR297W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RIF1 YBR275C Protein involved in control of DNA replication physical 1 1 1 Affinity Capture-RNA
YHR131C YHR131C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SAS10 YDL153C Subunit of U3-containing Small Subunit (SSU) processome complex physical 1 1 1 Affinity Capture-RNA
RKI1 YOR095C Ribose-5-phosphate ketol-isomerase physical 1 1 1 Affinity Capture-RNA
YOR296W YOR296W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RBH2 YJR030C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
PUT3 YKL015W Transcriptional activator physical 1 1 1 Affinity Capture-RNA
SPP382 YLR424W Essential protein that forms a dimer with Ntr2p physical 1 1 1 Affinity Capture-RNA
RAD53 YPL153C DNA damage response kinase physical 1 1 1 Affinity Capture-RNA
RGC1 YPR115W Putative regulator of the Fps1p glycerol channel physical 1 1 1 Affinity Capture-RNA
RKM2 YDR198C Ribosomal protein lysine methyltransferase physical 1 1 1 Affinity Capture-RNA
YDL211C YDL211C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
YOR062C YOR062C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
SMC2 YFR031C Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
TIM11 YDR322C-A Subunit e of mitochondrial F1F0-ATPase physical 1 1 1 Affinity Capture-RNA
SHQ1 YIL104C Chaperone protein physical 1 1 1 Affinity Capture-RNA
UTP9 YHR196W Nucleolar protein physical 1 1 1 Affinity Capture-RNA
UBP1 YDL122W Ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
RPT4 YOR259C ATPase of the 19S regulatory particle of the 26S proteasome physical 1 1 1 Affinity Capture-RNA
YJR079W YJR079W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
YLR345W YLR345W Similar to 6-phosphofructo-2-kinase enzymes physical 1 1 1 Affinity Capture-RNA
PUF6 YDR496C Pumilio-homology domain protein physical 1 1 1 Affinity Capture-RNA
SAP185 YJL098W Protein that forms a complex with the Sit4p protein phosphatase physical 1 1 1 Affinity Capture-RNA
YCR087C-A YCR087C-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
UBR1 YGR184C E3 ubiquitin ligase (N-recognin) physical 1 1 1 Affinity Capture-RNA
RRN11 YML043C Component of the core factor (CF) rDNA transcription factor complex physical 1 1 1 Affinity Capture-RNA
SLD3 YGL113W Protein involved in the initiation of DNA replication physical 1 1 1 Affinity Capture-RNA
SMY1 YKL079W Kinesin-like myosin passenger-protein physical 1 1 1 Affinity Capture-RNA
SMP1 YBR182C MADS-box transcription factor involved in osmotic stress response physical 1 1 1 Affinity Capture-RNA
SKI3 YPR189W Ski complex component and TPR protein physical 1 1 1 Affinity Capture-RNA
YDL241W YDL241W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SAS2 YMR127C Histone acetyltransferase (HAT) catalytic subunit of the SAS complex physical 1 1 1 Affinity Capture-RNA
TDA1 YMR291W Protein kinase of unknown cellular role physical 1 1 1 Affinity Capture-RNA
SKT5 YBL061C Activator of Chs3p (chitin synthase III) during vegetative growth physical 1 1 1 Affinity Capture-RNA
TFC4 YGR047C Subunit of RNA polymerase III transcription initiation factor complex physical 1 1 1 Affinity Capture-RNA
RPN4 YDL020C Transcription factor that stimulates expression of proteasome genes physical 1 1 1 Affinity Capture-RNA
RKR1 YMR247C RING domain E3 ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
RRP36 YOR287C Component of 90S preribosomes physical 1 1 1 Affinity Capture-RNA
YLR225C YLR225C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RNA15 YGL044C Component of the cleavage and polyadenylation factor I (CF I) physical 1 1 1 Affinity Capture-RNA
ULS1 YOR191W Swi2/Snf2-related translocase, SUMO-Targeted Ubiquitin Ligase (STUbL) physical 1 1 1 Affinity Capture-RNA
SSH4 YKL124W Specificity factor required for Rsp5p-dependent ubiquitination physical 1 1 1 Affinity Capture-RNA
SEC5 YDR166C Essential 107kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
RRN6 YBL014C Component of the core factor (CF) rDNA transcription factor complex physical 1 1 1 Affinity Capture-RNA
RAD7 YJR052W Nucleotide excision repair (NER) protein physical 1 1 1 Affinity Capture-RNA
UBC8 YEL012W Ubiquitin-conjugating enzyme that regulates gluconeogenesis physical 1 1 1 Affinity Capture-RNA
STE50 YCL032W Adaptor protein for various signaling pathways physical 1 1 1 Affinity Capture-RNA
RRI1 YDL216C Catalytic subunit of the COP9 signalosome (CSN) complex physical 1 1 1 Affinity Capture-RNA
SKM1 YOL113W Member of the PAK family of serine/threonine protein kinases physical 1 1 1 Affinity Capture-RNA
SWC3 YAL011W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
UBP2 YOR124C Ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
YJL213W YJL213W Protein of unknown function that may interact with ribosomes physical 1 1 1 Affinity Capture-RNA
VPS72 YDR485C Htz1p-binding component of the SWR1 complex physical 1 1 1 Affinity Capture-RNA
PUF4 YGL014W Member of the PUF protein family physical 1 1 1 Affinity Capture-RNA
PUF4 YGL014W Member of the PUF protein family genetic 1 1 1 Phenotypic Suppression
RAD50 YNL250W Subunit of MRX complex with Mre11p and Xrs2p physical 1 1 1 Affinity Capture-RNA
TRM11 YOL124C Catalytic subunit of adoMet-dependent tRNA methyltransferase complex physical 1 1 1 Affinity Capture-RNA
RHB1 YCR027C Putative Rheb-related GTPase physical 1 1 1 Affinity Capture-RNA
SEC6 YIL068C Essential 88kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
SAW1 YAL027W 5'- and 3'-flap DNA binding protein physical 1 1 1 Affinity Capture-RNA
RCM1 YNL022C rRNA m5C methyltransferase physical 1 1 1 Affinity Capture-RNA
STU2 YLR045C Microtubule polymerase of the XMAP215/Dis1 family physical 1 1 1 Affinity Capture-RNA
STE6 YKL209C Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
TOP1 YOL006C Topoisomerase I physical 1 1 1 Affinity Capture-RNA
USB1 YLR132C Putative poly(U)-specific 3'-to-5' RNA exonuclease physical 1 1 1 Affinity Capture-RNA
REI1 YBR267W Cytoplasmic pre-60S factor physical 1 1 1 Affinity Capture-RNA
SWI3 YJL176C Subunit of the SWI/SNF chromatin remodeling complex physical 1 1 1 Affinity Capture-RNA
RPC31 YNL151C RNA polymerase III subunit C31 physical 1 1 1 Affinity Capture-RNA
SNU56 YDR240C Component of U1 snRNP required for mRNA splicing via spliceosome physical 1 1 1 Affinity Capture-RNA
TIS11 YLR136C mRNA-binding protein expressed during iron starvation physical 1 1 1 Affinity Capture-RNA
SPP1 YPL138C Subunit of COMPASS (Set1C) physical 1 1 1 Affinity Capture-RNA
YDR514C YDR514C Protein of unknown function that localizes to mitochondria physical 1 1 1 Affinity Capture-RNA
VID30 YGL227W Central component of GID Complex, involved in FBPase degradation physical 1 1 1 Affinity Capture-RNA
YOR342C YOR342C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ROK1 YGL171W RNA-dependent ATPase physical 1 1 1 Affinity Capture-RNA
SNU66 YOR308C Component of the U4/U6.U5 snRNP complex physical 1 1 1 Affinity Capture-RNA
YPL034W YPL034W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RAD17 YOR368W Checkpoint protein physical 1 1 1 Affinity Capture-RNA
TLG2 YOL018C Syntaxin-like t-SNARE physical 1 1 1 Affinity Capture-RNA
TAF7 YMR227C TFIID subunit (67 kDa) physical 1 1 1 Affinity Capture-RNA
ROD1 YOR018W Alpha-arrestin involved in ubiquitin-dependent endocytosis physical 1 1 1 Affinity Capture-RNA
SPT3 YDR392W Subunit of the SAGA and SAGA-like transcriptional regulatory complexes physical 1 1 1 Affinity Capture-RNA
RRI2 YOL117W Subunit of the COP9 signalosome (CSN) complex physical 1 1 1 Affinity Capture-RNA
UBP15 YMR304W Ubiquitin-specific protease involved in protein deubiquitination physical 1 1 1 Affinity Capture-RNA
RAD18 YCR066W E3 ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
PXR1 YGR280C Essential protein involved in rRNA and snoRNA maturation physical 1 1 1 Affinity Capture-RNA
YGL185C YGL185C Putative protein with sequence similar to hydroxyacid dehydrogenases physical 1 1 1 Affinity Capture-RNA
UBP12 YJL197W Ubiquitin-specific protease physical 1 1 1 Affinity Capture-RNA
UTP7 YER082C Nucleolar protein physical 1 1 1 Affinity Capture-RNA
RCN1 YKL159C Protein involved in calcineurin regulation during calcium signaling physical 1 1 1 Affinity Capture-RNA
TRS85 YDR108W Component of transport protein particle (TRAPP) complex III physical 1 1 1 Affinity Capture-RNA
VPS501 YKR078W Vacuolar SNX-BAR protein physical 1 1 1 Affinity Capture-RNA
YIL014C-A YIL014C-A Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
STB2 YMR053C Protein that interacts with Sin3p in a two-hybrid assay physical 1 1 1 Affinity Capture-RNA
PUS7 YOR243C Pseudouridine synthase physical 1 1 1 Affinity Capture-RNA
TFG1 YGR186W TFIIF (Transcription Factor II) largest subunit physical 1 1 1 Affinity Capture-RNA
SPO13 YHR014W Meiotic regulator physical 1 1 1 Affinity Capture-RNA
ROF1 YHR177W Putative transcription factor containing a WOPR domain physical 1 1 1 Affinity Capture-RNA
VPS29 YHR012W Subunit of the membrane-associated retromer complex physical 1 1 1 Affinity Capture-RNA
SQS1 YNL224C Protein that stimulates the ATPase and helicase activities of Prp43p physical 1 1 1 Affinity Capture-RNA
RRG1 YDR065W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
RTR2 YDR066C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
YJL132W YJL132W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
RHO5 YNL180C Non-essential small GTPase of the Rho/Rac family of Ras-like proteins physical 1 1 1 Affinity Capture-RNA
SYC1 YOR179C Subunit of the APT subcomplex of cleavage and polyadenylation factor physical 1 1 1 Affinity Capture-RNA
SNT309 YPR101W Member of the NineTeen Complex (NTC) physical 1 1 1 Affinity Capture-RNA
YSP2 YDR326C Sterol-binding protein physical 1 1 1 Affinity Capture-RNA
SAP30 YMR263W Component of Rpd3L histone deacetylase complex physical 1 1 1 Affinity Capture-RNA
SEC72 YLR292C Non-essential subunit of Sec63 complex physical 1 1 1 Affinity Capture-RNA
UTP6 YDR449C Nucleolar protein physical 1 1 1 Affinity Capture-RNA
UTP6 YDR449C Nucleolar protein genetic 1 1 1 Negative Genetic
YPR027C YPR027C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
SPC105 YGL093W Subunit of a kinetochore-microtubule binding complex physical 1 1 1 Affinity Capture-RNA
SPC105 YGL093W Subunit of a kinetochore-microtubule binding complex genetic 1 1 1 Negative Genetic
YDR042C YDR042C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
VPS30 YPL120W Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II physical 1 1 1 Affinity Capture-RNA
TOS3 YGL179C Protein kinase physical 1 1 1 Affinity Capture-RNA
VPS71 YML041C Nucleosome-binding component of the SWR1 complex physical 1 1 1 Affinity Capture-RNA
TEL1 YBL088C Protein kinase primarily involved in telomere length regulation physical 1 1 1 Affinity Capture-RNA
VMS1 YDR049W Peptidyl-tRNA hydrolase that releases stalled peptides from ribosomes, physical 1 1 1 Affinity Capture-RNA
VMS1 YDR049W Peptidyl-tRNA hydrolase that releases stalled peptides from ribosomes, genetic 1 1 1 Negative Genetic
RRP8 YDR083W Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase physical 1 1 1 Affinity Capture-RNA
TRS130 YMR218C Component of transport protein particle (TRAPP) complex II physical 1 1 1 Affinity Capture-RNA
TRM10 YOL093W tRNA methyltransferase physical 1 1 1 Affinity Capture-RNA
SOG2 YOR353C Key component of the RAM signaling network physical 1 1 1 Affinity Capture-RNA
RIO1 YOR119C Serine kinase involved in cell cycle regulation and rDNA integrity physical 1 1 1 Affinity Capture-RNA
VPS21 YOR089C Endosomal Rab family GTPase physical 1 1 1 Affinity Capture-RNA
VPS21 YOR089C Endosomal Rab family GTPase genetic 1 1 1 Negative Genetic
SEN15 YMR059W Subunit of the tRNA splicing endonuclease physical 1 1 1 Affinity Capture-RNA
TTI2 YJR136C Subunit of the ASTRA complex, involved in chromatin remodeling physical 1 1 1 Affinity Capture-RNA
TMA16 YOR252W Protein of unknown function that associates with ribosomes physical 1 1 1 Affinity Capture-RNA
UTP20 YBL004W Component of the small-subunit (SSU) processome physical 1 1 1 Affinity Capture-RNA
RAD4 YER162C Damaged-DNA binding subunit of Nuclear Excision Repair Factor 2 physical 1 1 1 Affinity Capture-RNA
RAD4 YER162C Damaged-DNA binding subunit of Nuclear Excision Repair Factor 2 genetic 1 1 1 Negative Genetic
SPT14 YPL175W UDP-glycosyltransferase subunit of the GPI-GnT complex physical 1 1 1 Affinity Capture-RNA
RIT1 YMR283C Initiator methionine 2'-O-ribosyl phosphate transferase physical 1 1 1 Affinity Capture-RNA
UTP8 YGR128C Nucleolar protein required for export of tRNAs from the nucleus physical 1 1 1 Affinity Capture-RNA
RRP45 YDR280W Exosome non-catalytic core component physical 1 1 1 Affinity Capture-RNA
YBL028C YBL028C Protein of unknown function that may interact with ribosomes physical 1 1 1 Affinity Capture-RNA
RNT1 YMR239C Nuclear dsRNA-specific ribonuclease (RNase III) physical 1 1 1 Affinity Capture-RNA
PXA1 YPL147W Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa2p physical 1 1 1 Affinity Capture-RNA
YCT1 YLL055W High-affinity cysteine-specific transporter physical 1 1 1 Affinity Capture-RNA
REX4 YOL080C Putative RNA exonuclease physical 1 1 1 Affinity Capture-RNA
RPB9 YGL070C RNA polymerase II subunit B12.6 physical 1 1 1 Affinity Capture-RNA
RMD8 YFR048W Cytosolic protein required for sporulation physical 1 1 1 Affinity Capture-RNA
TSR1 YDL060W Protein required for processing of 20S pre-rRNA in the cytoplasm physical 1 1 1 Affinity Capture-RNA
SIR1 YKR101W Protein involved in silencing at mating-type loci HML and HMR physical 1 1 1 Affinity Capture-RNA
TOF2 YKR010C Protein required for rDNA silencing and mitotic rDNA condensation physical 1 1 1 Affinity Capture-RNA
RTT10 YPL183C WD40 domain-containing protein involved in endosomal recycling physical 1 1 1 Affinity Capture-RNA
SEC3 YER008C Subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
SPC34 YKR037C Essential subunit of the Dam1 complex (aka DASH complex) physical 1 1 1 Affinity Capture-RNA
YCG1 YDR325W Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
TAF11 YML015C TFIID subunit (40 kDa) physical 1 1 1 Affinity Capture-RNA
YKR011C YKR011C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
VID27 YNL212W Cytoplasmic protein of unknown function physical 1 1 1 Affinity Capture-RNA
RAD34 YDR314C Protein involved in nucleotide excision repair (NER) physical 1 1 1 Affinity Capture-RNA
SMY2 YBR172C GYF domain protein physical 1 1 1 Affinity Capture-RNA
RTT107 YHR154W BRCA1 C-terminal domain protein needed for recovery from DNA damage physical 1 1 1 Affinity Capture-RNA
RTT107 YHR154W BRCA1 C-terminal domain protein needed for recovery from DNA damage genetic 1 1 1 Negative Genetic
SNC2 YOR327C Vesicle membrane receptor protein (v-SNARE) physical 1 1 1 Affinity Capture-RNA
TAD2 YJL035C Subunit of tRNA-specific adenosine-34 deaminase physical 1 1 1 Affinity Capture-RNA
YCR101C YCR101C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
TLG1 YDR468C Essential t-SNARE that mediates fusion of vesicles with the late Golgi physical 1 1 1 Affinity Capture-RNA
REX3 YLR107W RNA exonuclease physical 1 1 1 Affinity Capture-RNA
SEC8 YPR055W Essential 121 kDa subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
SUM1 YDR310C Transcriptional repressor that regulates middle-sporulation genes physical 1 1 1 Affinity Capture-RNA
TAO3 YIL129C Component of the RAM signaling network physical 1 1 1 Affinity Capture-RNA
SLX8 YER116C Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex physical 1 1 1 Affinity Capture-RNA
RUD3 YOR216C Golgi matrix protein physical 1 1 1 Affinity Capture-RNA
RAV1 YJR033C Subunit of RAVE complex (Rav1p, Rav2p, Skp1p) physical 1 1 1 Affinity Capture-RNA
SLM1 YIL105C Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p physical 1 1 1 Affinity Capture-RNA
SUI2 YJR007W Alpha subunit of the translation initiation factor eIF2 genetic 1 1 1 Positive Genetic
RPB4 YJL140W RNA polymerase II subunit B32 physical 1 1 1 Affinity Capture-Western
RTT109 YLL002W Histone acetyltransferase genetic 1 1 1 Synthetic Growth Defect
TOR1 YJR066W PIK-related protein kinase and rapamycin target genetic 1 1 1 Phenotypic Enhancement
RVS161 YCR009C Amphiphysin-like lipid raft protein genetic 1 1 1 Positive Genetic
RPC25 YKL144C RNA polymerase III subunit C25 genetic 1 1 1 Negative Genetic
TAF6 YGL112C Subunit (60 kDa) of TFIID and SAGA complexes genetic 1 1 1 Negative Genetic
SGT1 YOR057W Cochaperone protein genetic 1 1 1 Negative Genetic
TFB5 YDR079C-A Component of RNA polymerase II general transcription factor TFIIH genetic 1 1 1 Negative Genetic
SOM1 YEL059C-A Subunit of the mitochondrial inner membrane peptidase (IMP) genetic 1 1 1 Negative Genetic
TPA1 YER049W Prolyl hydroxylase genetic 1 1 1 Negative Genetic
TMN3 YER113C Protein with a role in cellular adhesion and filamentous growth genetic 1 1 1 Negative Genetic
RPL40A YIL148W Ubiquitin-ribosomal 60S subunit protein L40A fusion protein genetic 1 1 1 Negative Genetic
VAM7 YGL212W Vacuolar SNARE protein genetic 1 1 1 Negative Genetic
RME1 YGR044C Zinc finger protein involved in control of meiosis genetic 1 1 1 Negative Genetic
RAD27 YKL113C 5' to 3' exonuclease, 5' flap endonuclease genetic 1 1 1 Negative Genetic
TUS1 YLR425W Guanine nucleotide exchange factor (GEF) that modulates Rho1p activity genetic 1 1 1 Negative Genetic
YMR030W-A YMR030W-A Putative protein of unknown function genetic 1 1 1 Negative Genetic
UBX4 YMR067C UBX domain-containing protein that interacts with Cdc48p genetic 1 1 1 Negative Genetic
TPM1 YNL079C Major isoform of tropomyosin genetic 1 1 1 Negative Genetic
RPS19B YNL302C Protein component of the small (40S) ribosomal subunit genetic 1 1 1 Negative Genetic
TCB1 YOR086C Lipid-binding ER protein involved in ER-plasma membrane tethering genetic 1 1 1 Negative Genetic
THI6 YPL214C Thiamine-phosphate diphosphorylase and hydroxyethylthiazole kinase genetic 1 1 1 Negative Genetic
FAR11 YNL127W Protein involved in recovery from cell cycle arrest physical 1 1 1 Affinity Capture-RNA
NOB1 YOR056C Protein involved in proteasomal and 40S ribosomal subunit biogenesis physical 1 1 1 Affinity Capture-RNA
GET4 YOR164C Protein involved in inserting tail-anchored proteins into ER membranes physical 1 1 1 Affinity Capture-RNA
EDC3 YEL015W Non-essential conserved protein with a role in mRNA decapping physical 1 1 1 Affinity Capture-RNA
DNM1 YLL001W Dynamin-related GTPase involved in mitochondrial organization physical 1 1 1 Affinity Capture-RNA
ATP4 YPL078C Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase physical 1 1 1 Affinity Capture-RNA
CRZ1 YNL027W Transcription factor, activates transcription of stress response genes physical 1 1 1 Affinity Capture-RNA
CAR2 YLR438W L-ornithine transaminase (OTAse) physical 1 1 1 Affinity Capture-RNA
GAS1 YMR307W Beta-1,3-glucanosyltransferase required for cell wall assembly physical 1 1 1 Affinity Capture-RNA
ACO1 YLR304C Aconitase physical 1 1 1 Affinity Capture-RNA
BBC1 YJL020C Protein possibly involved in assembly of actin patches physical 1 1 1 Affinity Capture-RNA
FAR8 YMR029C Protein involved in recovery from arrest in response to pheromone physical 1 1 1 Affinity Capture-RNA
LSP1 YPL004C Eisosome core component physical 1 1 1 Affinity Capture-RNA
PHO84 YML123C High-affinity inorganic phosphate (Pi) transporter physical 1 1 1 Affinity Capture-RNA
ATP3 YBR039W Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase physical 1 1 1 Affinity Capture-RNA
MDH1 YKL085W Mitochondrial malate dehydrogenase physical 1 1 1 Affinity Capture-RNA
GND1 YHR183W 6-phosphogluconate dehydrogenase (decarboxylating) physical 1 1 1 Affinity Capture-RNA
HEL2 YDR266C RING finger ubiquitin ligase (E3) physical 1 1 1 Affinity Capture-RNA
IRA2 YOL081W GTPase-activating protein physical 1 1 1 Affinity Capture-RNA
HYP2 YEL034W Translation elongation factor eIF-5A physical 1 1 1 Affinity Capture-RNA
CAF20 YOR276W Phosphoprotein of the mRNA cap-binding complex physical 1 1 1 Affinity Capture-RNA
CDC5 YMR001C Polo-like kinase required for mitotic exit physical 1 1 1 Affinity Capture-RNA
ATG17 YLR423C Scaffold protein responsible for phagophore assembly site organization physical 1 1 1 Affinity Capture-MS
APP1 YNL094W Phosphatidate phosphatase, converts phosphatidate to diacylglycerol physical 1 1 1 Affinity Capture-RNA
KIN1 YDR122W S/T protein kinase physical 1 1 1 Affinity Capture-RNA
CMP2 YML057W Calcineurin A physical 1 1 1 Affinity Capture-RNA
GDE1 YPL110C Glycerophosphocholine (GroPCho) phosphodiesterase physical 1 1 1 Affinity Capture-RNA
GSP2 YOR185C GTP binding protein (mammalian Ranp homolog) physical 1 1 1 Affinity Capture-RNA
GSP2 YOR185C GTP binding protein (mammalian Ranp homolog) genetic 1 1 1 Negative Genetic
GSP1 YLR293C Ran GTPase physical 1 1 1 Affinity Capture-RNA
CDC53 YDL132W Cullin genetic 1 1 1 Negative Genetic
ILV5 YLR355C Acetohydroxyacid reductoisomerase and mtDNA binding protein physical 1 1 1 Affinity Capture-RNA
FDO1 YMR144W Protein involved in directionality of mating type switching physical 1 1 1 Affinity Capture-RNA
PMA1 YGL008C Plasma membrane P2-type H+-ATPase physical 1 1 1 Affinity Capture-RNA
PMA2 YPL036W Plasma membrane H+-ATPase physical 1 1 1 Affinity Capture-RNA
LCP5 YER127W Essential protein involved in maturation of 18S rRNA physical 1 1 1 Affinity Capture-RNA
ESL2 YKR096W hEST1A/B (SMG5/6)-like protein physical 1 1 1 Affinity Capture-RNA
GLC8 YMR311C Regulatory subunit of protein phosphatase 1 (Glc7p) physical 1 1 1 Affinity Capture-RNA
BOL2 YGL220W Cytosolic protein involved in repression of iron regulon transcription physical 1 1 1 Affinity Capture-RNA
CMK1 YFR014C Calmodulin-dependent protein kinase physical 1 1 1 Affinity Capture-RNA
ADK1 YDR226W Adenylate kinase, required for purine metabolism physical 1 1 1 Affinity Capture-RNA
COF1 YLL050C Cofilin, involved in pH-dependent actin filament depolarization physical 1 1 1 Affinity Capture-RNA
MDM30 YLR368W F-box component of an SCF ubiquitin protein ligase complex physical 1 1 1 Affinity Capture-RNA
GPD1 YDL022W NAD-dependent glycerol-3-phosphate dehydrogenase physical 1 1 1 Affinity Capture-RNA
FAR1 YJL157C CDK inhibitor and nuclear anchor physical 1 1 1 Affinity Capture-RNA
PET112 YBL080C Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex physical 1 1 1 Affinity Capture-RNA
ATG42 YBR139W Vacuolar serine-type carboxypeptidase physical 1 1 1 Affinity Capture-RNA
DBF20 YPR111W Ser/Thr kinase involved in late nuclear division physical 1 1 1 Affinity Capture-RNA
ARG4 YHR018C Argininosuccinate lyase physical 1 1 1 Affinity Capture-RNA
AYR1 YIL124W Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase physical 1 1 1 Affinity Capture-RNA
PBR1 YNL181W Putative oxidoreductase physical 1 1 1 Affinity Capture-RNA
INM1 YHR046C Inositol monophosphatase genetic 1 1 1 Negative Genetic
KRE6 YPR159W Glucosyl hydrolase required for beta-1,6-glucan biosynthesis physical 1 1 1 Affinity Capture-RNA
MTC5 YDR128W Subunit of SEACAT, a subcomplex of the SEA complex physical 1 1 1 Affinity Capture-RNA
APT1 YML022W Adenine phosphoribosyltransferase physical 1 1 1 Affinity Capture-RNA
ERG10 YPL028W Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase) physical 1 1 1 Affinity Capture-RNA
LAF1 YMR102C Sterol-binding beta-propeller protein physical 1 1 1 Affinity Capture-RNA
HEM15 YOR176W Ferrochelatase physical 1 1 1 Affinity Capture-RNA
GIP2 YER054C Putative regulatory subunit of protein phosphatase Glc7p physical 1 1 1 Affinity Capture-RNA
PSH1 YOL054W E3 ubiquitin ligase targeting centromere-binding protein Cse4p physical 1 1 1 Affinity Capture-RNA
AIP1 YMR092C Actin cortical patch component physical 1 1 1 Affinity Capture-RNA
ELM1 YKL048C Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
GUF1 YLR289W Mitochondrial matrix GTPase physical 1 1 1 Affinity Capture-RNA
FHL1 YPR104C Regulator of ribosomal protein (RP) transcription physical 1 1 1 Affinity Capture-RNA
APE1 YKL103C Vacuolar aminopeptidase yscI physical 1 1 1 Affinity Capture-MS
ATG7 YHR171W Autophagy-related protein and dual specificity member of the E1 family physical 1 1 1 Affinity Capture-RNA
ART10 YLR392C Protein of unknown function that contains 2 PY motifs physical 1 1 1 Affinity Capture-RNA
HSL7 YBR133C Protein arginine N-methyltransferase physical 1 1 1 Affinity Capture-RNA
POL30 YBR088C Proliferating cell nuclear antigen (PCNA) genetic 1 1 1 Negative Genetic
OCA1 YNL099C Putative protein tyrosine phosphatase genetic 1 1 1 Positive Genetic
CDC37 YDR168W Essential Hsp90p co-chaperone physical 1 1 1 Affinity Capture-RNA
MET6 YER091C Cobalamin-independent methionine synthase physical 1 1 1 Affinity Capture-RNA
LRO1 YNR008W Acyltransferase that converts diacylglycerol to triacylglycerol (TGA) physical 1 1 1 Affinity Capture-RNA
AFR1 YDR085C Protein required for pheromone-induced projection (shmoo) formation physical 1 1 1 Affinity Capture-RNA
PEX6 YNL329C AAA-peroxin physical 1 1 1 Affinity Capture-RNA
HIR1 YBL008W Subunit of the HIR complex physical 1 1 1 Affinity Capture-RNA
CIN8 YEL061C Bipolar kinesin motor protein physical 1 1 1 Affinity Capture-RNA
INA1 YLR413W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
KRI1 YNL308C Essential nucleolar protein required for 40S ribosome biogenesis physical 1 1 1 Affinity Capture-RNA
CWC21 YDR482C Protein involved in RNA splicing by the spliceosome physical 1 1 1 Affinity Capture-RNA
CHS1 YNL192W Chitin synthase I physical 1 1 1 Affinity Capture-RNA
KSP1 YHR082C Serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
ISU1 YPL135W Conserved protein of the mitochondrial matrix physical 1 1 1 Affinity Capture-RNA
AIP5 YFR016C Protein that positively regulates actin assembly physical 1 1 1 Affinity Capture-RNA
HHO1 YPL127C Histone H1, linker histone with roles in meiosis and sporulation physical 1 1 1 Affinity Capture-RNA
DIA2 YOR080W Origin-binding F-box protein physical 1 1 1 Affinity Capture-RNA
CTF4 YPR135W Chromatin-associated protein physical 1 1 1 Affinity Capture-RNA
IRA1 YBR140C GTPase-activating protein physical 1 1 1 Affinity Capture-RNA
CAF4 YKR036C WD40 repeat-containing protein associated with the CCR4-NOT complex physical 1 1 1 Affinity Capture-RNA
NUS1 YDL193W Forms dehydrodolichyl diphosphate synthase complex with RER2 or SRT1 genetic 1 1 1 Negative Genetic
ILV2 YMR108W Acetolactate synthase physical 1 1 1 Affinity Capture-RNA
LSC1 YOR142W Alpha subunit of succinyl-CoA ligase physical 1 1 1 Affinity Capture-RNA
ATG20 YDL113C Sorting nexin family member physical 1 1 1 Affinity Capture-RNA
BUD9 YGR041W Protein involved in bud-site selection physical 1 1 1 Affinity Capture-RNA
ECM33 YBR078W GPI-anchored protein involved in efficient glucose uptake physical 1 1 1 Affinity Capture-RNA
PCL6 YER059W Pho85p cyclin of the Pho80p subfamily physical 1 1 1 Affinity Capture-RNA
NOP53 YPL146C Nucleolar protein physical 1 1 1 Affinity Capture-RNA
PAP2 YOL115W Non-canonical poly(A) polymerase physical 1 1 1 Affinity Capture-RNA
NUP1 YOR098C FG-nucleoporin component of central core of the nuclear pore complex physical 1 1 1 Affinity Capture-RNA
ELG1 YOR144C Subunit of an alternative replication factor C complex physical 1 1 1 Affinity Capture-RNA
LAA1 YJL207C AP-1 accessory protein physical 1 1 1 Affinity Capture-RNA
MCK1 YNL307C Dual-specificity ser/thr and tyrosine protein kinase physical 1 1 1 Affinity Capture-RNA
MFB1 YDR219C Mitochondria-associated F-box protein physical 1 1 1 Affinity Capture-RNA
MAS2 YHR024C Alpha subunit of the mitochondrial processing protease (MPP) genetic 1 1 1 Positive Genetic
ASR1 YPR093C Ubiquitin ligase that modifies and regulates RNA Pol II physical 1 1 1 Affinity Capture-RNA
BTN2 YGR142W v-SNARE binding protein physical 1 1 1 Affinity Capture-RNA
MEH1 YKR007W Subunit of the EGO/GSE complex genetic 1 1 1 Negative Genetic
DEF1 YKL054C RNAPII degradation factor genetic 1 1 1 Negative Genetic
MMS4 YBR098W Subunit of structure-specific Mms4p-Mus81p endonuclease physical 1 1 1 Affinity Capture-RNA
MIC19 YFR011C Component of the MICOS complex physical 1 1 1 Affinity Capture-RNA
DUF1 YOL087C Ubiquitin-binding protein of unknown function physical 1 1 1 Affinity Capture-RNA
CBP2 YHL038C Required for splicing of the group I intron bI5 of the COB pre-mRNA physical 1 1 1 Affinity Capture-RNA
GPA1 YHR005C Subunit of G protein involved in pheromone response physical 1 1 1 Affinity Capture-RNA
CSC1 YLR241W Calcium permeable gated cation channel physical 1 1 1 Affinity Capture-RNA
PMI40 YER003C Mannose-6-phosphate isomerase genetic 1 1 1 Negative Genetic
GCR2 YNL199C Transcriptional activator of genes involved in glycolysis physical 1 1 1 Affinity Capture-RNA
CKI1 YLR133W Choline kinase physical 1 1 1 Affinity Capture-RNA
ARA1 YBR149W NADP+ dependent arabinose dehydrogenase genetic 1 1 1 Negative Genetic
GCY1 YOR120W Glycerol dehydrogenase physical 1 1 1 Affinity Capture-RNA
CDH1 YGL003C Activator of anaphase-promoting complex/cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
CDH1 YGL003C Activator of anaphase-promoting complex/cyclosome (APC/C) genetic 1 1 1 Negative Genetic
MET16 YPR167C 3'-phosphoadenylsulfate reductase physical 1 1 1 Affinity Capture-RNA
MRX1 YER077C Protein that associates with mitochondrial ribosome physical 1 1 1 Affinity Capture-RNA
EXO70 YJL085W Subunit of the exocyst complex physical 1 1 1 Affinity Capture-RNA
BIR1 YJR089W Subunit of chromosomal passenger complex (CPC) physical 1 1 1 Affinity Capture-RNA
ERG11 YHR007C Lanosterol 14-alpha-demethylase physical 1 1 1 Affinity Capture-RNA
EXG1 YLR300W Major exo-1,3-beta-glucanase of the cell wall physical 1 1 1 Affinity Capture-RNA
MMS22 YLR320W Subunit of E3 ubiquitin ligase complex involved in replication repair physical 1 1 1 Affinity Capture-MS
DCK1 YLR422W Dock family protein (Dedicator Of CytoKinesis), homolog of human DOCK1 physical 1 1 1 Affinity Capture-RNA
MTQ2 YDR140W S-adenosylmethionine-dependent methyltransferase physical 1 1 1 Affinity Capture-MS
BIT2 YBR270C Subunit of TORC2 membrane-associated complex physical 1 1 1 Affinity Capture-RNA
PEX29 YDR479C ER-resident protein involved in peroxisomal biogenesis physical 1 1 1 Affinity Capture-RNA
HOF1 YMR032W F-BAR protein that regulates actin cytoskeleton organization physical 1 1 1 Affinity Capture-RNA
DSL1 YNL258C Peripheral membrane protein needed for Golgi-to-ER retrograde traffic physical 1 1 1 Affinity Capture-RNA
ALR1 YOL130W Plasma membrane Mg(2+) transporter physical 1 1 1 Affinity Capture-RNA
CDD1 YLR245C Cytidine deaminase genetic 1 1 1 Negative Genetic
CIT2 YCR005C Citrate synthase, peroxisomal isozyme involved in glyoxylate cycle physical 1 1 1 Affinity Capture-RNA
MCM10 YIL150C Essential chromatin-associated protein physical 1 1 1 Affinity Capture-RNA
ECM31 YBR176W Ketopantoate hydroxymethyltransferase physical 1 1 1 Affinity Capture-RNA
BNI4 YNL233W Targeting subunit for Glc7p protein phosphatase physical 1 1 1 Affinity Capture-RNA
GZF3 YJL110C GATA zinc finger protein physical 1 1 1 Affinity Capture-RNA
INO2 YDR123C Transcription factor physical 1 1 1 Affinity Capture-RNA
IRE1 YHR079C Serine-threonine kinase and endoribonuclease physical 1 1 1 Affinity Capture-RNA
GCN4 YEL009C bZIP transcriptional activator of amino acid biosynthetic genes physical 1 1 1 Affinity Capture-RNA
MAD2 YJL030W Component of the spindle-assembly checkpoint complex physical 1 1 1 Affinity Capture-RNA
MSB2 YGR014W Mucin family member involved in various signaling pathways physical 1 1 1 Affinity Capture-RNA
MSN5 YDR335W Karyopherin physical 1 1 1 Affinity Capture-RNA
MSN5 YDR335W Karyopherin genetic 1 1 1 Negative Genetic
HAA1 YPR008W Transcriptional activator involved in adaptation to weak acid stress physical 1 1 1 Affinity Capture-RNA
NDC1 YML031W Subunit of the transmembrane ring of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
NDL1 YLR254C Homolog of nuclear distribution factor NudE genetic 1 1 1 Negative Genetic
PEX18 YHR160C Peroxin physical 1 1 1 Affinity Capture-RNA
PCL9 YDL179W Cyclin physical 1 1 1 Affinity Capture-RNA
PKC1 YBL105C Protein serine/threonine kinase physical 1 1 1 Affinity Capture-RNA
IKS1 YJL057C Protein kinase of unknown cellular role physical 1 1 1 Affinity Capture-RNA
PRP5 YBR237W RNA helicase in the DEAD-box family physical 1 1 1 Affinity Capture-RNA
CSM3 YMR048W Replication fork associated factor physical 1 1 1 Affinity Capture-RNA
PBY1 YBR094W Putative tubulin tyrosine ligase associated with P-bodies physical 1 1 1 Affinity Capture-RNA
GNP1 YDR508C Broad specificity amino acid permease physical 1 1 1 Affinity Capture-RNA
DAS2 YDR020C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
CHA4 YLR098C DNA binding transcriptional activator physical 1 1 1 Affinity Capture-RNA
DET1 YDR051C Acid phosphatase physical 1 1 1 Affinity Capture-RNA
FMP16 YDR070C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
LAM6 YLR072W Sterol transporter that transfers sterols between membranes physical 1 1 1 Affinity Capture-RNA
AKR2 YOR034C Ankyrin repeat-containing protein physical 1 1 1 Affinity Capture-RNA
ASK1 YKL052C Essential subunit of the Dam1 complex (aka DASH complex) physical 1 1 1 Affinity Capture-RNA
ITT1 YML068W Protein that modulates the efficiency of translation termination physical 1 1 1 Affinity Capture-RNA
MGL2 YMR210W Monoacylglycerol and triacylglycerol lipase physical 1 1 1 Affinity Capture-RNA
OCA2 YNL056W Protein of unknown function genetic 1 1 1 Negative Genetic
NST1 YNL091W Translational inhibitor and suppressor of proteasome-assembly defects physical 1 1 1 Affinity Capture-RNA
PEP12 YOR036W Target membrane receptor (t-SNARE) physical 1 1 1 Affinity Capture-RNA
AIM4 YBR194W Protein proposed to be associated with the nuclear pore complex physical 1 1 1 Affinity Capture-MS
APC11 YDL008W Catalytic core subunit, Anaphase-Promoting Complex/Cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
APC9 YLR102C Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
CDC27 YBL084C Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C) physical 1 1 1 Affinity Capture-RNA
CEP3 YMR168C Essential kinetochore protein physical 1 1 1 Affinity Capture-RNA
PEX10 YDR265W Peroxisomal membrane E3 ubiquitin ligase physical 1 1 1 Affinity Capture-RNA
PEX13 YLR191W Peroxisomal importomer complex component physical 1 1 1 Affinity Capture-RNA
HOT1 YMR172W Transcription factor for glycerol biosynthetic genes physical 1 1 1 Affinity Capture-RNA
CDC31 YOR257W Calcium-binding component of the spindle pole body (SPB) half-bridge physical 1 1 1 Affinity Capture-RNA
ARP5 YNL059C Nuclear actin-related protein involved in chromatin remodeling physical 1 1 1 Affinity Capture-RNA
HOS3 YPL116W Trichostatin A-insensitive homodimeric histone deacetylase (HDAC) physical 1 1 1 Affinity Capture-RNA
NOT5 YPR072W Component of the CCR4-NOT core complex, involved in mRNA decapping physical 1 1 1 Affinity Capture-RNA
CBF1 YJR060W Basic helix-loop-helix (bHLH) protein genetic 1 1 1 Negative Genetic
MIF2 YKL089W Centromeric CDEIII region binding protein physical 1 1 1 Affinity Capture-RNA
PLC1 YPL268W Phospholipase C physical 1 1 1 Affinity Capture-RNA
BUR6 YER159C Subunit of a heterodimeric NC2 transcription regulator complex physical 1 1 1 Affinity Capture-RNA
BRN1 YBL097W Subunit of the condensin complex physical 1 1 1 Affinity Capture-RNA
BUD4 YJR092W Anillin-like protein involved in bud-site selection physical 1 1 1 Affinity Capture-RNA
CLB5 YPR120C B-type cyclin involved in DNA replication during S phase physical 1 1 1 Affinity Capture-RNA
CTK2 YJL006C Beta subunit of C-terminal domain kinase I (CTDK-I) physical 1 1 1 Affinity Capture-RNA
DBF4 YDR052C Regulatory subunit of Cdc7p-Dbf4p kinase complex physical 1 1 1 Affinity Capture-RNA
DBF4 YDR052C Regulatory subunit of Cdc7p-Dbf4p kinase complex genetic 1 1 1 Negative Genetic
ELO3 YLR372W Elongase physical 1 1 1 Affinity Capture-RNA
GCD10 YNL062C Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p physical 1 1 1 Affinity Capture-RNA
HOS1 YPR068C Class I histone deacetylase (HDAC) family member physical 1 1 1 Affinity Capture-RNA
HSP150 YJL159W O-mannosylated heat shock protein physical 1 1 1 Affinity Capture-RNA
IOC4 YMR044W Member of a complex (Isw1b) with Isw1p and Ioc2p physical 1 1 1 Affinity Capture-RNA
KAR3 YPR141C Minus-end-directed microtubule motor physical 1 1 1 Affinity Capture-RNA
MAD1 YGL086W Coiled-coil protein involved in spindle-assembly checkpoint physical 1 1 1 Affinity Capture-RNA
MDM12 YOL009C Mitochondrial outer membrane protein, ERMES complex subunit genetic 1 1 1 Negative Genetic
MYO3 YKL129C One of two type I myosins physical 1 1 1 Affinity Capture-RNA
MYO5 YMR109W One of two type I myosin motors physical 1 1 1 Affinity Capture-RNA
NRG2 YBR066C Transcriptional repressor physical 1 1 1 Affinity Capture-RNA
CBF2 YGR140W Essential kinetochore protein physical 1 1 1 Affinity Capture-RNA
ORC3 YLL004W Subunit of the origin recognition complex (ORC) physical 1 1 1 Affinity Capture-RNA
PRK1 YIL095W Ser/Thr protein kinase physical 1 1 1 Affinity Capture-RNA
FIG4 YNL325C Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase physical 1 1 1 Affinity Capture-RNA
DPH2 YKL191W Protein required for synthesis of diphthamide physical 1 1 1 Affinity Capture-RNA
IQG1 YPL242C Actin filament binding protein that enhances actin ring formation physical 1 1 1 Affinity Capture-RNA
JNM1 YMR294W Component of the yeast dynactin complex physical 1 1 1 Affinity Capture-RNA
CIN1 YOR349W Tubulin folding factor D involved in beta-tubulin (Tub2p) folding physical 1 1 1 Affinity Capture-RNA
HAP1 YLR256W Zinc finger transcription factor physical 1 1 1 Affinity Capture-RNA
KAR2 YJL034W ATPase involved in protein import into the ER physical 1 1 1 Affinity Capture-RNA
OST4 YDL232W Subunit of the oligosaccharyltransferase complex of the ER lumen physical 1 1 1 Affinity Capture-RNA
BUD8 YLR353W Protein involved in bud-site selection physical 1 1 1 Affinity Capture-RNA
MPT5 YGL178W mRNA-binding protein of the PUF family genetic 1 1 1 Phenotypic Suppression
PDR17 YNL264C Phosphatidylinositol transfer protein (PITP) physical 1 1 1 Affinity Capture-RNA
BUD2 YKL092C GTPase activating factor for Rsr1p/Bud1p physical 1 1 1 Affinity Capture-RNA
PPR1 YLR014C Zinc finger transcription factor physical 1 1 1 Affinity Capture-RNA
ABF1 YKL112W DNA binding protein with possible chromatin-reorganizing activity physical 1 1 1 Affinity Capture-RNA
MUD2 YKL074C Protein involved in early pre-mRNA splicing physical 1 1 1 Affinity Capture-RNA
MSO1 YNR049C Lipid-interacting protein in SNARE complex assembly machinery physical 1 1 1 Affinity Capture-RNA
ESC1 YMR219W Protein involved in telomeric silencing physical 1 1 1 Affinity Capture-RNA
GPB2 YAL056W Multistep regulator of cAMP-PKA signaling physical 1 1 1 Affinity Capture-RNA
GSY2 YLR258W Glycogen synthase physical 1 1 1 Affinity Capture-RNA
INP53 YOR109W Polyphosphatidylinositol phosphatase physical 1 1 1 Affinity Capture-RNA
DOT1 YDR440W Nucleosomal histone H3-Lys79 methylase genetic 1 1 1 Negative Genetic
DSE1 YER124C Daughter cell-specific protein physical 1 1 1 Affinity Capture-RNA
ATC1 YDR184C Nuclear protein physical 1 1 1 Affinity Capture-RNA
ALY1 YKR021W Alpha arrestin, substrate of calcineurin physical 1 1 1 Affinity Capture-RNA
DPH6 YLR143W Diphthamide synthetase physical 1 1 1 Affinity Capture-RNA
CDC19 YAL038W Pyruvate kinase physical 1 1 1 Affinity Capture-RNA
MDV1 YJL112W Peripheral protein of cytosolic face of mitochondrial outer membrane physical 1 1 1 Affinity Capture-RNA
MET31 YPL038W Zinc-finger DNA-binding transcription factor physical 1 1 1 Affinity Capture-RNA
PDR5 YOR153W Plasma membrane ATP-binding cassette (ABC) transporter physical 1 1 1 Affinity Capture-RNA
OTU1 YFL044C Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p physical 1 1 1 Affinity Capture-RNA
PRP16 YKR086W DEAH-box RNA helicase physical 1 1 1 Affinity Capture-RNA
NNK1 YKL171W Protein kinase physical 1 1 1 Affinity Capture-RNA
NNK1 YKL171W Protein kinase genetic 1 1 1 Negative Genetic
ARK1 YNL020C Ser/Thr protein kinase physical 1 1 1 Affinity Capture-RNA
PRP22 YER013W DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase physical 1 1 1 Affinity Capture-RNA
OSH3 YHR073W Member of an oxysterol-binding protein family physical 1 1 1 Affinity Capture-RNA
ORC5 YNL261W Subunit of the origin recognition complex (ORC) physical 1 1 1 Affinity Capture-RNA
MIX17 YMR002W Mitochondrial intermembrane space protein physical 1 1 1 Affinity Capture-RNA
PBP1 YGR178C Component of glucose deprivation induced stress granules physical 1 1 1 Affinity Capture-RNA
ATP10 YLR393W Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase physical 1 1 1 Affinity Capture-RNA
ADY4 YLR227C Structural component of the meiotic outer plaque physical 1 1 1 Affinity Capture-RNA
MSB3 YNL293W Rab GTPase-activating protein physical 1 1 1 Affinity Capture-RNA
PFY1 YOR122C Profilin physical 1 1 1 Affinity Capture-RNA
ENT2 YLR206W Epsin-like protein required for endocytosis and actin patch assembly physical 1 1 1 Affinity Capture-RNA
FUS1 YCL027W Membrane protein localized to the shmoo tip physical 1 1 1 Affinity Capture-RNA
NCP1 YHR042W NADP-cytochrome P450 reductase physical 1 1 1 Affinity Capture-RNA
HMS1 YOR032C bHLH protein with similarity to myc-family transcription factors physical 1 1 1 Affinity Capture-RNA
CCH1 YGR217W Voltage-gated high-affinity calcium channel physical 1 1 1 Affinity Capture-RNA
GAT1 YFL021W Transcriptional activator of nitrogen catabolite repression genes physical 1 1 1 Affinity Capture-RNA
AUR1 YKL004W Phosphatidylinositol:ceramide phosphoinositol transferase physical 1 1 1 Affinity Capture-RNA
BSD2 YBR290W Heavy metal ion homeostasis protein physical 1 1 1 Affinity Capture-RNA
GGA1 YDR358W Golgi-localized protein with homology to gamma-adaptin physical 1 1 1 Affinity Capture-RNA
PAM16 YJL104W Subunit of the import motor (PAM complex) genetic 1 1 1 Positive Genetic
PMT2 YAL023C Protein O-mannosyltransferase of the ER membrane physical 1 1 1 Affinity Capture-RNA
NUP188 YML103C Subunit of the inner ring of the nuclear pore complex (NPC) physical 1 1 1 Affinity Capture-RNA
EIS1 YMR031C Component of the eisosome required for proper eisosome assembly physical 1 1 1 Affinity Capture-RNA
GSM1 YJL103C Putative zinc cluster protein of unknown function physical 1 1 1 Affinity Capture-RNA
PHB1 YGR132C Subunit of the prohibitin complex (Phb1p-Phb2p) genetic 1 1 1 Positive Genetic
BET4 YJL031C Alpha subunit of Type II geranylgeranyltransferase physical 1 1 1 Affinity Capture-RNA
PRS4 YBL068W 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP physical 1 1 1 Affinity Capture-RNA
HUB1 YNR032C-A Ubiquitin-like protein modifier physical 1 1 1 Affinity Capture-RNA
ERV14 YGL054C COPII-coated vesicle protein physical 1 1 1 Affinity Capture-RNA
CLB3 YDL155W B-type cyclin involved in cell cycle progression physical 1 1 1 Affinity Capture-RNA
MON2 YNL297C Protein with a role in endocytosis and vacuole integrity physical 1 1 1 Affinity Capture-RNA
PDR1 YGL013C Transcription factor that regulates the pleiotropic drug response physical 1 1 1 Affinity Capture-RNA
AQR1 YNL065W Plasma membrane transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
ERG28 YER044C Endoplasmic reticulum membrane protein physical 1 1 1 Affinity Capture-RNA
EFT1 YOR133W Elongation factor 2 (EF-2), also encoded by EFT2 physical 1 1 1 Affinity Capture-RNA
PER33 YLR064W Protein that localizes to the endoplasmic reticulum physical 1 1 1 Affinity Capture-RNA
ASG1 YIL130W Zinc cluster protein proposed to be a transcriptional regulator physical 1 1 1 Affinity Capture-RNA
ERG5 YMR015C C-22 sterol desaturase physical 1 1 1 Affinity Capture-RNA
ASN2 YGR124W Asparagine synthetase physical 1 1 1 Affinity Capture-RNA
BOP3 YNL042W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
EUC1 YMR111C Sequence-specific DNA binding protein physical 1 1 1 Affinity Capture-RNA
MIT1 YEL007W Transcriptional regulator of pseudohyphal growth physical 1 1 1 Affinity Capture-RNA
AIM44 YPL158C Regulator of Cdc42p and Rho1p physical 1 1 1 Affinity Capture-RNA
KAR5 YMR065W Protein required for nuclear membrane fusion during karyogamy physical 1 1 1 Affinity Capture-RNA
MTD1 YKR080W NAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase physical 1 1 1 Affinity Capture-RNA
IDS2 YJL146W Protein involved in modulation of Ime2p activity during meiosis physical 1 1 1 Affinity Capture-RNA
INH1 YDL181W Protein that inhibits ATP hydrolysis by the F1F0-ATP synthase physical 1 1 1 Affinity Capture-RNA
COY1 YKL179C Golgi membrane protein with similarity to mammalian CASP physical 1 1 1 Affinity Capture-RNA
GTA1 YEL043W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
POM152 YMR129W Glycoprotein subunit of transmembrane ring of nuclear pore complex physical 1 1 1 Affinity Capture-RNA
KIP2 YPL155C Kinesin-related motor protein involved in mitotic spindle positioning physical 1 1 1 Affinity Capture-RNA
ATP17 YDR377W Subunit f of the F0 sector of mitochondrial F1F0 ATP synthase physical 1 1 1 Affinity Capture-RNA
CSF1 YLR087C Protein with structural similarity to lipid transport protein Vps13p physical 1 1 1 Affinity Capture-RNA
COQ3 YOL096C O-methyltransferase physical 1 1 1 Affinity Capture-RNA
COX15 YER141W Heme a synthase physical 1 1 1 Affinity Capture-RNA
IFH1 YLR223C Coactivator, regulates transcription of ribosomal protein (RP) genes physical 1 1 1 Affinity Capture-RNA
KTR2 YKR061W Mannosyltransferase involved in N-linked protein glycosylation physical 1 1 1 Affinity Capture-RNA
MMS1 YPR164W Subunit of E3 ubiquitin ligase complex involved in replication repair physical 1 1 1 Affinity Capture-RNA
NDJ1 YOL104C Protein that regulates meiotic SPB cohesion and telomere clustering physical 1 1 1 Affinity Capture-RNA
ORC6 YHR118C Subunit of the origin recognition complex (ORC) physical 1 1 1 Affinity Capture-RNA
ORC6 YHR118C Subunit of the origin recognition complex (ORC) genetic 1 1 1 Negative Genetic
JHD2 YJR119C JmjC domain family histone demethylase physical 1 1 1 Affinity Capture-RNA
CAN1 YEL063C Plasma membrane arginine permease physical 1 1 1 Affinity Capture-RNA
ANT1 YPR128C Peroxisomal adenine nucleotide transporter physical 1 1 1 Affinity Capture-RNA
MXR1 YER042W Methionine-S-sulfoxide reductase genetic 1 1 1 Negative Genetic
PEX1 YKL197C AAA-peroxin physical 1 1 1 Affinity Capture-RNA
MRH1 YDR033W Protein that localizes primarily to the plasma membrane physical 1 1 1 Affinity Capture-RNA
NCE102 YPR149W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ERG7 YHR072W Lanosterol synthase physical 1 1 1 Affinity Capture-RNA
BOL3 YAL046C Protein involved in Fe-S cluster transfer to mitochondrial clients physical 1 1 1 Affinity Capture-RNA
HSP12 YFL014W Plasma membrane protein involved in maintaining membrane organization physical 1 1 1 Affinity Capture-RNA
NTO1 YPR031W Subunit of the NuA3 histone acetyltransferase complex physical 1 1 1 Affinity Capture-RNA
NTH2 YBR001C Putative neutral trehalase, required for thermotolerance physical 1 1 1 Affinity Capture-RNA
GLK1 YCL040W Glucokinase physical 1 1 1 Affinity Capture-RNA
IFA38 YBR159W Microsomal beta-keto-reductase physical 1 1 1 Affinity Capture-RNA
GLO4 YOR040W Mitochondrial glyoxalase II physical 1 1 1 Affinity Capture-RNA
HRQ1 YDR291W 3'-5' DNA helicase of the conserved RecQ family physical 1 1 1 Affinity Capture-RNA
BPH1 YCR032W Protein homologous to Chediak-Higashi syndrome and Beige proteins physical 1 1 1 Affinity Capture-RNA
KCS1 YDR017C Inositol hexakisphosphate and inositol heptakisphosphate kinase physical 1 1 1 Affinity Capture-RNA
EKI1 YDR147W Ethanolamine kinase physical 1 1 1 Affinity Capture-RNA
MSS4 YDR208W Phosphatidylinositol-4-phosphate 5-kinase physical 1 1 1 Affinity Capture-RNA
FCF2 YLR051C Nucleolar protein involved in the early steps of 35S rRNA processing physical 1 1 1 Affinity Capture-RNA
PIP2 YOR363C Autoregulatory, oleate-activated transcription factor physical 1 1 1 Affinity Capture-RNA
GLO2 YDR272W Cytoplasmic glyoxalase II physical 1 1 1 Affinity Capture-RNA
FPR2 YDR519W Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase) physical 1 1 1 Affinity Capture-RNA
KXD1 YGL079W Subunit of the BLOC-1 complex involved in endosomal maturation physical 1 1 1 Affinity Capture-RNA
GUK1 YDR454C Guanylate kinase genetic 1 1 1 Negative Genetic
PDC2 YDR081C Transcription factor for thiamine-regulated genes physical 1 1 1 Affinity Capture-RNA
AHK1 YDL073W Scaffold protein in the HKR1 sub-branch of the Hog1p-signaling pathway physical 1 1 1 Affinity Capture-RNA
ISD11 YER048W-A Cysteine desulfurase (Nfs1p) activator physical 1 1 1 Affinity Capture-RNA
BRL1 YHR036W Essential nuclear envelope/ER integral membrane protein physical 1 1 1 Affinity Capture-RNA
PMR1 YGL167C High affinity Ca2+/Mn2+ P-type ATPase genetic 1 1 1 Negative Genetic
IRC3 YDR332W Double-stranded DNA-dependent helicase of the DExH/D-box family physical 1 1 1 Affinity Capture-RNA
GUT1 YHL032C Glycerol kinase physical 1 1 1 Affinity Capture-RNA
HOB2 YPR117W Protein with structural similarity to lipid transport protein Vps13p physical 1 1 1 Affinity Capture-RNA
BAR1 YIL015W Aspartyl protease secreted to periplasmic space of mating type a cell physical 1 1 1 Affinity Capture-RNA
ALD6 YPL061W Cytosolic aldehyde dehydrogenase physical 1 1 1 Affinity Capture-RNA
CYB5 YNL111C Cytochrome b5 physical 1 1 1 Affinity Capture-RNA
IRC8 YJL051W Bud tip localized protein of unknown function physical 1 1 1 Affinity Capture-RNA
MUK1 YPL070W Guanine nucleotide exchange factor (GEF) physical 1 1 1 Affinity Capture-RNA
CGI121 YML036W Component of the EKC/KEOPS complex physical 1 1 1 Affinity Capture-RNA
ELF1 YKL160W Transcription elongation factor with a conserved zinc finger domain physical 1 1 1 Affinity Capture-RNA
ELF1 YKL160W Transcription elongation factor with a conserved zinc finger domain genetic 1 1 1 Negative Genetic
CYK3 YDL117W SH3-domain protein located in the bud neck and cytokinetic actin ring physical 1 1 1 Affinity Capture-RNA
APS1 YLR170C Small subunit of the clathrin-associated adaptor complex AP-1 physical 1 1 1 Affinity Capture-RNA
MSS51 YLR203C Specific translational activator for the mitochondrial COX1 mRNA physical 1 1 1 Affinity Capture-RNA
CAJ1 YER048C Nuclear type II J heat shock protein of the E. coli dnaJ family physical 1 1 1 Affinity Capture-RNA
PRC1 YMR297W Vacuolar carboxypeptidase Y (proteinase C, CPY) physical 1 1 1 Affinity Capture-RNA
IDP1 YDL066W Mitochondrial NADP-specific isocitrate dehydrogenase physical 1 1 1 Affinity Capture-RNA
PGS1 YCL004W Phosphatidylglycerolphosphate synthase physical 1 1 1 Affinity Capture-RNA
DNF1 YER166W Aminophospholipid translocase (flippase) physical 1 1 1 Affinity Capture-RNA
LEU9 YOR108W Alpha-isopropylmalate synthase II (2-isopropylmalate synthase) physical 1 1 1 Affinity Capture-RNA
MSB1 YOR188W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
OXP1 YKL215C 5-oxoprolinase physical 1 1 1 Affinity Capture-RNA
PFK26 YIL107C 6-phosphofructo-2-kinase physical 1 1 1 Affinity Capture-RNA
PST1 YDR055W Cell wall protein that contains a putative GPI-attachment site physical 1 1 1 Affinity Capture-RNA
MUB1 YMR100W MYND domain-containing protein physical 1 1 1 Affinity Capture-RNA
PET130 YJL023C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
ABZ2 YMR289W Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase) physical 1 1 1 Affinity Capture-RNA
LDB19 YOR322C Alpha-arrestin, Ub-ligase adaptor for Rsp5p genetic 1 1 1 Negative Genetic
GEP5 YLR091W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
PSA1 YDL055C GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase) physical 1 1 1 Affinity Capture-RNA
PHB2 YGR231C Subunit of the prohibitin complex (Phb1p-Phb2p) genetic 1 1 1 Positive Genetic
ERP3 YDL018C Protein with similarity to Emp24p and Erv25p physical 1 1 1 Affinity Capture-RNA
PTM1 YKL039W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
PMS1 YNL082W ATP-binding protein required for mismatch repair physical 1 1 1 Affinity Capture-RNA
PMS1 YNL082W ATP-binding protein required for mismatch repair genetic 1 1 1 Negative Genetic
MIL1 YFL034W Predicted lipase physical 1 1 1 Affinity Capture-RNA
DOS2 YDR068W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
GUA1 YMR217W GMP synthase physical 1 1 1 Affinity Capture-RNA
HEM1 YDR232W 5-aminolevulinate synthase physical 1 1 1 Affinity Capture-RNA
FYV6 YNL133C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
APJ1 YNL077W Hsp40 chaperone with a role in SUMO-mediated protein degradation physical 1 1 1 Affinity Capture-MS
CMK2 YOL016C Calmodulin-dependent protein kinase physical 1 1 1 Affinity Capture-RNA
HUT1 YPL244C Protein with a role in UDP-galactose transport to the Golgi lumen physical 1 1 1 Affinity Capture-RNA
DGA1 YOR245C Diacylglycerol acyltransferase physical 1 1 1 Affinity Capture-RNA
DUS1 YML080W Dihydrouridine synthase physical 1 1 1 Affinity Capture-RNA
PHO91 YNR013C Low-affinity vacuolar phosphate transporter physical 1 1 1 Affinity Capture-RNA
NVJ2 YPR091C Lipid-binding ER protein, enriched at nucleus-vacuolar junctions (NVJ) physical 1 1 1 Affinity Capture-RNA
IRC23 YOR044W Protein of unknown function involved in multidrug resistance physical 1 1 1 Affinity Capture-RNA
LAG1 YHL003C Ceramide synthase component physical 1 1 1 Affinity Capture-RNA
AIM39 YOL053W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
HIS5 YIL116W Histidinol-phosphate aminotransferase physical 1 1 1 Affinity Capture-RNA
GAS3 YMR215W Putative 1,3-beta-glucanosyltransferase physical 1 1 1 Affinity Capture-RNA
COQ8 YGL119W ATPase required for ubiquinone biosynthesis and respiratory growth physical 1 1 1 Affinity Capture-RNA
PUF2 YPR042C PUF family mRNA-binding protein physical 1 1 1 Affinity Capture-RNA
MRX9 YDL027C Protein that associates with mitochondrial ribosome physical 1 1 1 Affinity Capture-RNA
LOA1 YPR139C Lysophosphatidic acid acyltransferase physical 1 1 1 Affinity Capture-RNA
DAP2 YHR028C Dipeptidyl aminopeptidase physical 1 1 1 Affinity Capture-RNA
PGA2 YNL149C Essential protein required for maturation of Gas1p and Pho8p physical 1 1 1 Affinity Capture-RNA
PCK1 YKR097W Phosphoenolpyruvate carboxykinase genetic 1 1 1 Negative Genetic
DDP1 YOR163W Diadenosine and diphosphoinositol polyphosphate phosphatase genetic 1 1 1 Negative Genetic
CYC1 YJR048W Cytochrome c, isoform 1 physical 1 1 1 Affinity Capture-RNA
PKP2 YGL059W Mitochondrial protein kinase physical 1 1 1 Affinity Capture-RNA
NCR1 YPL006W Vacuolar membrane protein involved with Npc2p in sterol trafficking genetic 1 1 1 Negative Genetic
NRM1 YNR009W Transcriptional co-repressor of MBF-regulated gene expression physical 1 1 1 Affinity Capture-RNA
DER1 YBR201W ER membrane protein that promotes export of misfolded polypeptides physical 1 1 1 Affinity Capture-RNA
DNF2 YDR093W Aminophospholipid translocase (flippase) physical 1 1 1 Affinity Capture-RNA
ERV1 YGR029W Flavin-linked sulfhydryl oxidase of the mitochondrial IMS physical 1 1 1 Affinity Capture-RNA
PEX3 YDR329C Peroxisomal membrane protein (PMP) physical 1 1 1 Affinity Capture-RNA
MRX18 YBR056W Putative glycoside hydrolase of the mitochondrial intermembrane space physical 1 1 1 Affinity Capture-RNA
PNC1 YGL037C Nicotinamidase that converts nicotinamide to nicotinic acid physical 1 1 1 Affinity Capture-RNA
EEB1 YPL095C Acyl-coenzymeA:ethanol O-acyltransferase physical 1 1 1 Affinity Capture-RNA
MDM34 YGL219C Mitochondrial component of the ERMES complex genetic 1 1 1 Negative Genetic
PCS60 YBR222C Oxalyl-CoA synthetase physical 1 1 1 Affinity Capture-RNA
NPR1 YNL183C Protein kinase physical 1 1 1 Affinity Capture-RNA
HXT3 YDR345C Low affinity glucose transporter of the major facilitator superfamily physical 1 1 1 Affinity Capture-RNA
FRE1 YLR214W Ferric reductase and cupric reductase physical 1 1 1 Affinity Capture-RNA
PTR2 YKR093W Integral membrane peptide transporter physical 1 1 1 Affinity Capture-RNA
COM2 YER130C Transcription factor that binds IME1 Upstream Activation Signal (UAS) physical 1 1 1 Affinity Capture-RNA
NOP10 YHR072W-A Subunit of box H/ACA snoRNP complex physical 1 1 1 Affinity Capture-RNA
CIS3 YJL158C Mannose-containing glycoprotein constituent of the cell wall physical 1 1 1 Affinity Capture-RNA
MUP1 YGR055W High affinity methionine permease physical 1 1 1 Affinity Capture-RNA
FCY2 YER056C Purine-cytosine permease physical 1 1 1 Affinity Capture-RNA
DPP1 YDR284C Diacylglycerol pyrophosphate (DGPP) phosphatase physical 1 1 1 Affinity Capture-RNA
MET8 YBR213W Bifunctional dehydrogenase and ferrochelatase physical 1 1 1 Affinity Capture-RNA
CPR4 YCR069W Peptidyl-prolyl cis-trans isomerase (cyclophilin) physical 1 1 1 Affinity Capture-RNA
MAL13 YGR288W MAL-activator protein physical 1 1 1 Affinity Capture-RNA
FMP25 YLR077W Protein required for assembly of respiratory complex III physical 1 1 1 Affinity Capture-RNA
CEM1 YER061C Mitochondrial beta-keto-acyl synthase physical 1 1 1 Affinity Capture-RNA
INO1 YJL153C Inositol-3-phosphate synthase physical 1 1 1 Affinity Capture-RNA
HNT2 YDR305C Dinucleoside triphosphate hydrolase physical 1 1 1 Affinity Capture-RNA
LSO2 YGR169C-A Ribosome-associated protein physical 1 1 1 Affinity Capture-RNA
CGR1 YGL029W Protein involved in nucleolar integrity and processing of pre-rRNA physical 1 1 1 Affinity Capture-RNA
HER2 YMR293C Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex physical 1 1 1 Affinity Capture-RNA
DYN3 YMR299C Dynein light intermediate chain (LIC) physical 1 1 1 Affinity Capture-RNA
CHO2 YGR157W Phosphatidylethanolamine methyltransferase (PEMT) genetic 1 1 1 Negative Genetic
EFR3 YMR212C Protein required for Stt4-containing PI kinase complex localization physical 1 1 1 Affinity Capture-RNA
ALG12 YNR030W Alpha-1,6-mannosyltransferase localized to the ER physical 1 1 1 Affinity Capture-RNA
GPI13 YLL031C ER membrane localized phosphoryltransferase physical 1 1 1 Affinity Capture-RNA
CDS1 YBR029C Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) physical 1 1 1 Affinity Capture-RNA
PHO92 YDR374C Posttranscriptional regulator of phosphate and glucose metabolism physical 1 1 1 Affinity Capture-RNA
HPT1 YDR399W Dimeric hypoxanthine-guanine phosphoribosyltransferase physical 1 1 1 Affinity Capture-RNA
GPC1 YGR149W Glycerophosphocholine acyltransferase (GPCAT) physical 1 1 1 Affinity Capture-RNA
FLO5 YHR211W Lectin-like cell wall protein (flocculin) involved in flocculation physical 1 1 1 Affinity Capture-RNA
ISC1 YER019W Inositol phosphosphingolipid phospholipase C genetic 1 1 1 Negative Genetic
DSE2 YHR143W Daughter cell-specific secreted protein with similarity to glucanases physical 1 1 1 Affinity Capture-RNA
CCW14 YLR390W-A Covalently linked cell wall glycoprotein physical 1 1 1 Affinity Capture-RNA
CTS1 YLR286C Endochitinase physical 1 1 1 Affinity Capture-RNA
DFG10 YIL049W Probable polyprenol reductase physical 1 1 1 Affinity Capture-RNA
GCG1 YER163C Gamma-glutamyl cyclotransferase physical 1 1 1 Affinity Capture-RNA
FLO9 YAL063C Lectin-like protein with similarity to Flo1p physical 1 1 1 Affinity Capture-RNA
PEX4 YGR133W Peroxisomal ubiquitin conjugating enzyme physical 1 1 1 Affinity Capture-RNA
COX9 YDL067C Subunit VIIa of cytochrome c oxidase (Complex IV) physical 1 1 1 Affinity Capture-RNA
CRT10 YOL063C Protein required for the degradation of mutant 25S rRNAs physical 1 1 1 Affinity Capture-RNA
NCW1 YMR122W-A Protein of unknown function physical 1 1 1 Affinity Capture-RNA
PIR3 YKL163W O-glycosylated covalently-bound cell wall protein physical 1 1 1 Affinity Capture-RNA
NSG2 YNL156C Protein involved in regulation of sterol biosynthesis physical 1 1 1 Affinity Capture-RNA
MPC3 YGR243W Highly conserved subunit of the mitochondrial pyruvate carrier (MPC) physical 1 1 1 Affinity Capture-RNA
COX20 YDR231C Mitochondrial inner membrane protein physical 1 1 1 Affinity Capture-RNA
PIR1 YKL164C O-glycosylated protein required for cell wall stability physical 1 1 1 Affinity Capture-RNA
GPM3 YOL056W Nonfunctional homolog of Gpm1p phosphoglycerate mutase physical 1 1 1 Affinity Capture-RNA
NCS2 YNL119W Protein required for uridine thiolation of Lys(UUU) and Glu(UUC) tRNAs physical 1 1 1 Affinity Capture-RNA
MAM3 YOL060C Protein involved in magnesium homeostasis physical 1 1 1 Affinity Capture-RNA
CCC2 YDR270W Cu(+2)-transporting P-type ATPase physical 1 1 1 Affinity Capture-RNA
MTC3 YGL226W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
HOR7 YMR251W-A Protein of unknown function physical 1 1 1 Affinity Capture-RNA
COX8 YLR395C Subunit VIII of cytochrome c oxidase (Complex IV) physical 1 1 1 Affinity Capture-RNA
LIH1 YJR107W Putative lipase physical 1 1 1 Affinity Capture-RNA
IGO2 YHR132W-A Protein required for initiation of G0 program genetic 1 1 1 Negative Genetic
AIM32 YML050W 2Fe-2S mitochondrial protein involved in redox quality control physical 1 1 1 Affinity Capture-RNA
LSC2 YGR244C Beta subunit of succinyl-CoA ligase physical 1 1 1 Affinity Capture-RNA
DPC25 YPL107W Putative mitochondrial protein of unknown function physical 1 1 1 Affinity Capture-RNA
GRX6 YDL010W Cis-Golgi localized monothiol glutaredoxin, binds Fe-S cluster physical 1 1 1 Affinity Capture-RNA
DOG2 YHR043C 2-deoxyglucose-6-phosphate phosphatase physical 1 1 1 Affinity Capture-RNA
FMP33 YJL161W Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
MTE1 YGR042W Protein of unknown function physical 1 1 1 Affinity Capture-RNA
GLD1 YPR109W Component of Dsc E3 ligase complex in Golgi and endosomes physical 1 1 1 Affinity Capture-RNA
CMC4 YMR194C-B Protein that localizes to the mitochondrial intermembrane space physical 1 1 1 Affinity Capture-RNA
HEL1 YKR017C RING finger ubiquitin ligase (E3) physical 1 1 1 Affinity Capture-RNA
MCO32 YGR053C Putative protein of unknown function physical 1 1 1 Affinity Capture-RNA
IRC20 YLR247C E3 ubiquitin ligase and putative helicase physical 1 1 1 Affinity Capture-RNA
IMP2 YMR035W Catalytic subunit of mitochondrial inner membrane peptidase complex physical 1 1 1 Affinity Capture-RNA
FRE4 YNR060W Ferric reductase physical 1 1 1 Affinity Capture-RNA
MCT1 YOR221C Predicted malonyl-CoA:ACP transferase physical 1 1 1 Affinity Capture-RNA
GSH2 YOL049W Glutathione synthetase physical 1 1 1 Affinity Capture-RNA
MCD4 YKL165C Protein involved in GPI anchor synthesis physical 1 1 1 Affinity Capture-RNA
MOD5 YOR274W Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase physical 1 1 1 Affinity Capture-RNA
AIM19 YIL087C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
HEM25 YDL119C Mitochondrial glycine transporter physical 1 1 1 Affinity Capture-RNA
FMP30 YPL103C Protein with a role in maintaining mitochondrial morphology physical 1 1 1 Affinity Capture-RNA
HMX1 YLR205C ER localized heme oxygenase physical 1 1 1 Affinity Capture-RNA
PHO87 YCR037C Low-affinity inorganic phosphate (Pi) transporter physical 1 1 1 Affinity Capture-RNA
GCV2 YMR189W P subunit of the mitochondrial glycine decarboxylase complex physical 1 1 1 Affinity Capture-RNA
NMA111 YNL123W Serine protease and general molecular chaperone physical 1 1 1 Affinity Capture-RNA
AGP1 YCL025C Broad-specificity, low-affinity amino acid permease genetic 1 1 1 Negative Genetic
GMC1 YDR506C Protein involved in meiotic progression physical 1 1 1 Affinity Capture-RNA
PMP1 YCR024C-A Regulatory subunit for the plasma membrane H(+)-ATPase Pma1p physical 1 1 1 Affinity Capture-RNA
MNN1 YER001W Alpha-1,3-mannosyltransferase physical 1 1 1 Affinity Capture-RNA
NHX1 YDR456W Na+/H+ and K+/H+ exchanger physical 1 1 1 Affinity Capture-RNA
GPI1 YGR216C Membrane protein involved in the synthesis of GlcNAc-PI physical 1 1 1 Affinity Capture-RNA
PMP2 YEL017C-A Proteolipid associated with plasma membrane H(+)-ATPase (Pma1p) physical 1 1 1 Affinity Capture-RNA
MCH2 YKL221W Protein with similarity to mammalian monocarboxylate permeases physical 1 1 1 Affinity Capture-RNA
PET8 YNL003C S-adenosylmethionine transporter of the mitochondrial inner membrane genetic 1 1 1 Negative Genetic
CIN10 YDR387C Putative transporter physical 1 1 1 Affinity Capture-RNA
PIG2 YIL045W Putative type-1 protein phosphatase targeting subunit physical 1 1 1 Affinity Capture-RNA
PTK1 YKL198C Putative serine/threonine protein kinase physical 1 1 1 Affinity Capture-RNA
GCV1 YDR019C T subunit of the mitochondrial glycine decarboxylase complex physical 1 1 1 Affinity Capture-RNA
PIF1 YML061C DNA helicase, potent G-quadruplex DNA binder/unwinder physical 1 1 1 Affinity Capture-RNA
EFM3 YJR129C S-adenosylmethionine-dependent methyltransferase physical 1 1 1 Affinity Capture-RNA
ECT1 YGR007W Ethanolamine-phosphate cytidylyltransferase physical 1 1 1 Affinity Capture-RNA
NPR3 YHL023C Subunit of the Iml1p/SEACIT complex physical 1 1 1 Affinity Capture-RNA
NCA2 YPR155C Protein that regulates expression of Fo-F1 ATP synthase subunits physical 1 1 1 Affinity Capture-RNA
PET54 YGR222W Mitochondrial inner membrane protein physical 1 1 1 Affinity Capture-RNA
BMT6 YLR063W Methyltransferase required for m3U2843 methylation of the 25S rRNA physical 1 1 1 Affinity Capture-RNA
PDR16 YNL231C Phosphatidylinositol transfer protein (PITP) physical 1 1 1 Affinity Capture-RNA
NGL1 YOL042W Putative endonuclease physical 1 1 1 Affinity Capture-RNA
NPC2 YDL046W Sterol transport protein and functional homolog of human NPC2/He1 physical 1 1 1 Affinity Capture-RNA
MFA1 YDR461W Mating pheromone a-factor physical 1 1 1 Affinity Capture-RNA
ORT1 YOR130C Ornithine transporter of the mitochondrial inner membrane physical 1 1 1 Affinity Capture-RNA
MSH1 YHR120W DNA-binding protein of the mitochondria physical 1 1 1 Affinity Capture-RNA
OCT1 YKL134C Mitochondrial intermediate peptidase physical 1 1 1 Affinity Capture-RNA
LST4 YKL176C Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p physical 1 1 1 Affinity Capture-RNA
MRX10 YDR282C Mitochondrial inner membrane protein of unknown function physical 1 1 1 Affinity Capture-RNA
BDS1 YOL164W Bacterially-derived sulfatase physical 1 1 1 Affinity Capture-RNA
GPI11 YDR302W ER membrane protein involved in a late step of GPI anchor assembly physical 1 1 1 Affinity Capture-RNA
MRX20 YFR045W Putative mitochondrial transport protein physical 1 1 1 Affinity Capture-RNA
ICT1 YLR099C Lysophosphatidic acid acyltransferase physical 1 1 1 Affinity Capture-RNA
IRC21 YMR073C Protein of unknown function physical 1 1 1 Affinity Capture-RNA
PRM4 YPL156C Pheromone-regulated protein proposed to be involved in mating physical 1 1 1 Affinity Capture-RNA
PGC1 YPL206C Phosphatidylglycerol phospholipase C physical 1 1 1 Affinity Capture-RNA
DBR1 YKL149C RNA lariat debranching enzyme physical 1 1 1 Affinity Capture-RNA
HNT3 YOR258W DNA 5' AMP hydrolase involved in DNA repair physical 1 1 1 Affinity Capture-RNA
PCP1 YGR101W Mitochondrial serine protease physical 1 1 1 Affinity Capture-RNA
PCP1 YGR101W Mitochondrial serine protease genetic 1 1 1 Negative Genetic
AAT1 YKL106W Mitochondrial aspartate aminotransferase physical 1 1 1 Affinity Capture-RNA
LEU5 YHR002W Mitochondrial carrier protein physical 1 1 1 Affinity Capture-RNA
PEX9 YMR018W Peroxisomal membrane signal receptor for peroxisomal matrix proteins genetic 1 1 1 Negative Genetic