GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	physical	10	4	5	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-fractionation, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-fractionation, Co-purification
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	genetic	8	4	8	Synthetic Growth Defect, Synthetic Growth Defect, Phenotypic Enhancement, Synthetic Growth Defect, Phenotypic Enhancement, Negative Genetic, Synthetic Lethality, Synthetic Growth Defect
SSE2	YBR169C	Member of Hsp110 subclass of the heat shock protein 70 (HSP70) family	physical	5	3	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Co-purification
HSP82	YPL240C	Hsp90 chaperone	physical	5	2	4	Affinity Capture-MS, Affinity Capture-MS, Co-purification, Affinity Capture-MS, Affinity Capture-MS
RPN11	YFR004W	Metalloprotease subunit of 19S regulatory particle	physical	4	2	4	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-purification
RPC40	YPR110C	RNA polymerase subunit AC40	physical	4	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-purification
NOC4	YPR144C	Nucleolar protein	physical	4	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-purification
SSZ1	YHR064C	Hsp70 protein that interacts with Zuo1p (a DnaJ homolog)	physical	4	2	3	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Co-fractionation
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	physical	3	3	3	Affinity Capture-RNA, Co-purification, Affinity Capture-MS
DHH1	YDL160C	Cytoplasmic DEAD-box helicase and mRNA decapping activator	physical	3	3	3	Affinity Capture-RNA, Co-purification, Affinity Capture-MS
FES1	YBR101C	Hsp70 (Ssa1p) nucleotide exchange factor	physical	3	3	3	Affinity Capture-Western, Reconstituted Complex, Co-purification
SUP35	YDR172W	Translation termination factor eRF3	physical	3	3	3	Co-purification, Affinity Capture-Western, Affinity Capture-MS
RPN10	YHR200W	Proteasome polyubiquitin receptor	physical	3	2	3	Affinity Capture-MS, Affinity Capture-MS, Co-purification
MCA1	YOR197W	Ca2+-dependent cysteine protease	physical	3	2	3	Affinity Capture-MS, Co-purification, Affinity Capture-MS
PUF3	YLL013C	Protein of the mitochondrial outer surface	physical	3	1	3	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-RNA
YGR054W	YGR054W	Eukaryotic initiation factor eIF2A	physical	3	3	2	Affinity Capture-MS, Reconstituted Complex, Co-purification
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Co-purification
PUS1	YPL212C	tRNA:pseudouridine synthase	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Co-purification
PPH22	YDL188C	Catalytic subunit of protein phosphatase 2A, PP2A	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Co-purification
TKL1	YPR074C	Transketolase	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Co-purification
TIF3	YPR163C	Translation initiation factor eIF-4B	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Co-purification
SSB1	YDL229W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Co-purification
NTO1	YPR031W	Subunit of the NuA3 histone acetyltransferase complex	physical	3	2	2	Affinity Capture-MS, Affinity Capture-MS, Co-purification
VPS5	YOR069W	Nexin-1 homolog	physical	3	1	2	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS
ESA1	YOR244W	Catalytic subunit of the histone acetyltransferase complex (NuA4)	physical	2	2	2	Affinity Capture-MS, Co-purification
BRX1	YOL077C	Nucleolar protein	physical	2	2	2	Affinity Capture-MS, Co-purification
RPF2	YKR081C	Essential protein involved in rRNA maturation and ribosomal assembly	physical	2	2	2	Affinity Capture-MS, Co-purification
MRT4	YKL009W	Protein involved in mRNA turnover and ribosome assembly	physical	2	2	2	Affinity Capture-MS, Co-purification
MES1	YGR264C	Methionyl-tRNA synthetase	physical	2	2	2	Co-purification, Affinity Capture-RNA
BMH1	YER177W	14-3-3 protein, major isoform	physical	2	2	2	Affinity Capture-MS, Co-purification
RRP6	YOR001W	Nuclear exosome exonuclease component	physical	2	2	2	Co-purification, Affinity Capture-MS
ILS1	YBL076C	Cytoplasmic isoleucine-tRNA synthetase	physical	2	2	2	Co-purification, Affinity Capture-MS
ARX1	YDR101C	Nuclear export factor for the ribosomal pre-60S subunit	physical	2	2	2	Affinity Capture-MS, Co-purification
NAP1	YKR048C	Histone chaperone and assembly chaperone for Rps6a/b	physical	2	2	2	Affinity Capture-MS, Co-purification
PRE1	YER012W	Beta 4 subunit of the 20S proteasome	physical	2	2	2	Affinity Capture-MS, Co-purification
ECM16	YMR128W	Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP	physical	2	2	2	Co-purification, Affinity Capture-MS
ARD1	YHR013C	Subunit of protein N-terminal acetyltransferase NatA	physical	2	2	2	Affinity Capture-MS, Co-purification
BMH2	YDR099W	14-3-3 protein, minor isoform	physical	2	2	2	Affinity Capture-MS, Co-purification
CKS1	YBR135W	Cyclin-dependent protein kinase regulatory subunit and adaptor	physical	2	2	2	Affinity Capture-MS, Co-purification
ENP1	YBR247C	Protein associated with U3 and U14 snoRNAs	physical	2	2	2	Affinity Capture-MS, Co-purification
MRPL10	YNL284C	Mitochondrial ribosomal protein of the large subunit	physical	2	2	2	Affinity Capture-MS, Co-purification
NMD3	YHR170W	Protein involved in nuclear export of the large ribosomal subunit	physical	2	2	2	Co-purification, Affinity Capture-MS
RPL23A	YBL087C	Ribosomal 60S subunit protein L23A	physical	2	2	2	Affinity Capture-MS, Co-purification
DBP2	YNL112W	ATP-dependent RNA helicase of the DEAD-box protein family	physical	2	2	2	Affinity Capture-MS, Co-purification
SNF1	YDR477W	AMP-activated S/T protein kinase	physical	2	2	2	Affinity Capture-MS, Co-purification
RPT5	YOR117W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	2	2	2	Affinity Capture-MS, Co-purification
SRO9	YCL037C	Cytoplasmic RNA-binding protein	physical	2	2	2	Affinity Capture-RNA, Co-purification
SGV1	YPR161C	Cyclin (Bur2p)-dependent protein kinase	physical	2	2	2	Affinity Capture-MS, Co-purification
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	physical	2	2	2	Affinity Capture-MS, Co-purification
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	physical	2	2	2	Affinity Capture-MS, Affinity Capture-RNA
RBG1	YAL036C	Member of the DRG family of GTP-binding proteins	physical	2	2	2	Affinity Capture-MS, Co-purification
LSM12	YHR121W	Protein of unknown function that may function in RNA processing	physical	2	2	2	Affinity Capture-MS, Co-purification
HYP2	YEL034W	Translation elongation factor eIF-5A	physical	2	2	2	Affinity Capture-MS, Co-purification
CAF20	YOR276W	Phosphoprotein of the mRNA cap-binding complex	physical	2	2	2	Co-purification, Affinity Capture-MS
AHP1	YLR109W	Thiol-specific peroxiredoxin	physical	2	2	2	Affinity Capture-MS, Co-purification
RVS161	YCR009C	Amphiphysin-like lipid raft protein	physical	2	2	2	Affinity Capture-MS, Co-purification
RGP1	YDR137W	Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p)	physical	2	2	2	Affinity Capture-MS, Co-purification
ILV2	YMR108W	Acetolactate synthase	physical	2	2	2	Affinity Capture-MS, Co-purification
CLB2	YPR119W	B-type cyclin involved in cell cycle progression	physical	2	2	2	Affinity Capture-MS, Co-purification
JJJ1	YNL227C	Co-chaperone that stimulates the ATPase activity of Ssa1p	genetic	2	2	2	Synthetic Lethality, Dosage Rescue
ADE2	YOR128C	Phosphoribosylaminoimidazole carboxylase	physical	2	2	2	Affinity Capture-Western, Co-purification
GCN4	YEL009C	bZIP transcriptional activator of amino acid biosynthetic genes	physical	2	2	2	Co-purification, Affinity Capture-Western
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	physical	2	2	2	Affinity Capture-MS, Co-purification
MPT5	YGL178W	mRNA-binding protein of the PUF family	physical	2	2	2	Co-purification, Affinity Capture-RNA
OTU1	YFL044C	Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p	physical	2	2	2	Affinity Capture-MS, Co-purification
BAT2	YJR148W	Cytosolic branched-chain amino acid (BCAA) aminotransferase	physical	2	2	2	Affinity Capture-MS, Co-purification
YAF9	YNL107W	Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes	physical	2	2	2	Affinity Capture-MS, Co-purification
TPD3	YAL016W	Regulatory subunit A of the heterotrimeric PP2A complex	physical	2	2	2	Affinity Capture-MS, Co-purification
ZUO1	YGR285C	Ribosome-associated chaperone	physical	2	2	2	Affinity Capture-MS, Co-purification
TPS1	YBR126C	Synthase subunit of trehalose-6-P synthase/phosphatase complex	physical	2	2	2	Affinity Capture-MS, Co-purification
TYR1	YBR166C	Prephenate dehydrogenase involved in tyrosine biosynthesis	physical	2	2	2	Affinity Capture-MS, Co-purification
UTP4	YDR324C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	2	2	2	Affinity Capture-MS, Co-purification
UTP6	YDR449C	Nucleolar protein	physical	2	2	2	Affinity Capture-MS, Co-purification
UTP8	YGR128C	Nucleolar protein required for export of tRNAs from the nucleus	physical	2	2	2	Affinity Capture-MS, Co-purification
TIF6	YPR016C	Constituent of 66S pre-ribosomal particles	physical	2	2	2	Affinity Capture-MS, Co-purification
TFB4	YPR056W	Subunit of TFIIH complex	physical	2	2	2	Affinity Capture-MS, Co-purification
VID24	YBR105C	GID Complex regulatory subunit	physical	2	2	2	Co-purification, Affinity Capture-MS
TMA108	YIL137C	Ribosome-associated, nascent chain binding factor	physical	2	2	2	Co-purification, Affinity Capture-MS
TSA1	YML028W	Thioredoxin peroxidase	physical	2	2	2	Co-purification, Reconstituted Complex
SSC1	YJR045C	Hsp70 family ATPase	physical	2	2	2	Co-purification, Affinity Capture-MS
TFC6	YDR362C	Subunit of RNA polymerase III transcription initiation factor complex	physical	2	2	2	Co-purification, Affinity Capture-MS
EFT1	YOR133W	Elongation factor 2 (EF-2), also encoded by EFT2	physical	2	2	2	Affinity Capture-MS, Co-purification
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	physical	2	2	2	Co-purification, Affinity Capture-MS
ANR2	YKL047W	Protein of unknown function	physical	2	2	2	Affinity Capture-MS, Co-purification
SDO1	YLR022C	Guanine nucleotide exchange factor (GEF) for Ria1p	physical	2	2	2	Affinity Capture-MS, Co-purification
SCH9	YHR205W	AGC family protein kinase	physical	2	2	2	Co-purification, Affinity Capture-Western
SCD6	YPR129W	Repressor of translation initiation	physical	2	2	2	Affinity Capture-MS, Co-purification
SAM50	YNL026W	Component of the Sorting and Assembly Machinery (SAM) complex	physical	2	2	2	Co-purification, Affinity Capture-MS
SFP1	YLR403W	Regulates transcription of ribosomal protein and biogenesis genes	regulation	2	1	2	DNA to cDNA expression microarray evidence, DNA to cDNA expression microarray evidence
HAT1	YPL001W	Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FAS2	YPL231W	Alpha subunit of fatty acid synthetase	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RAD1	YPL022W	Single-stranded DNA endonuclease (with Rad10p)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SKI3	YPR189W	Ski complex component and TPR protein	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
DOP1	YDR141C	Protein involved in vesicular transport at trans-Golgi network (TGN)	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
COG4	YPR105C	Essential component of the conserved oligomeric Golgi complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
GIP3	YPL137C	Cytoplasmic protein that regulates protein phosphatase 1 Glc7p	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SFL1	YOR140W	Transcriptional repressor and activator	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
SSA3	YBL075C	ATPase involved in protein folding and the response to stress	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
YAR009C	YAR009C	Retrotransposon TYA Gag and TYB Pol genes	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
TOP1	YOL006C	Topoisomerase I	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
ULP1	YPL020C	Protease that specifically cleaves Smt3p protein conjugates	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
THP3	YPR045C	Protein that may have a role in transcription elongation	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
LIP5	YOR196C	Protein involved in biosynthesis of the coenzyme lipoic acid	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
RQC2	YPL009C	Component of the Ribosome Quality Control (RQC) complex	physical	2	1	1	Affinity Capture-MS, Affinity Capture-MS
FKH1	YIL131C	Forkhead family transcription factor	regulation	1	1	1	chromatin immunoprecipitation- exonuclease evidence
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	regulation	1	1	1	DNA to cDNA expression microarray evidence
RFX1	YLR176C	Major transcriptional repressor of DNA-damage-regulated genes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SPT20	YOL148C	Subunit of the SAGA transcriptional regulatory complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
RAP1	YNL216W	Essential DNA-binding transcription regulator that binds many loci	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
SIN4	YNL236W	Subunit of the RNA polymerase II mediator complex	regulation	1	1	1	DNA to cDNA expression microarray evidence
HSF1	YGL073W	Trimeric heat shock transcription factor	regulation	1	1	1	DNA to cDNA expression microarray evidence
CST6	YIL036W	Basic leucine zipper (bZIP) transcription factor from ATF/CREB family	regulation	1	1	1	DNA to cDNA expression microarray evidence
TUP1	YCR084C	General repressor of transcription in complex with Cyc8p	regulation	1	1	1	DNA to cDNA expression microarray evidence
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	regulation	1	1	1	DNA to cDNA expression microarray evidence
BRF1	YGR246C	TFIIIB B-related factor	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC40	YDR364C	Pre-mRNA splicing factor	physical	1	1	1	Co-purification
CDC40	YDR364C	Pre-mRNA splicing factor	genetic	1	1	1	Synthetic Rescue
AME1	YBR211C	Essential kinetochore protein associated with microtubules and SPBs	physical	1	1	1	Co-purification
DSN1	YIR010W	Essential component of the outer kinetochore MIND complex	physical	1	1	1	Affinity Capture-MS
DED81	YHR019C	Cytosolic asparaginyl-tRNA synthetase	physical	1	1	1	Co-purification
AIM25	YJR100C	Mitochondria protein of unknown function	physical	1	1	1	Co-purification
RPB3	YIL021W	RNA polymerase II third largest subunit B44	physical	1	1	1	Co-purification
RPO21	YDL140C	RNA polymerase II largest subunit B220	physical	1	1	1	Co-purification
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	1	1	1	Co-purification
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	genetic	1	1	1	Negative Genetic
CKA1	YIL035C	Alpha catalytic subunit of casein kinase 2 (CK2)	physical	1	1	1	Co-purification
CKB1	YGL019W	Beta regulatory subunit of casein kinase 2 (CK2)	physical	1	1	1	Co-purification
RPB2	YOR151C	RNA polymerase II second largest subunit B150	physical	1	1	1	Co-purification
NSE1	YLR007W	Component of the SMC5-SMC6 complex	physical	1	1	1	Co-purification
NSE1	YLR007W	Component of the SMC5-SMC6 complex	genetic	1	1	1	Negative Genetic
NSE3	YDR288W	Component of the SMC5-SMC6 complex	genetic	1	1	1	Negative Genetic
SDS22	YKL193C	Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p	physical	1	1	1	Co-purification
IKI3	YLR384C	Subunit of Elongator complex	physical	1	1	1	Co-purification
RVB1	YDR190C	ATP-dependent DNA helicase, also known as pontin	physical	1	1	1	Co-purification
RVB2	YPL235W	ATP-dependent DNA helicase, also known as reptin	physical	1	1	1	Co-purification
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	physical	1	1	1	Co-purification
DBP9	YLR276C	DEAD-box protein required for 27S rRNA processing	physical	1	1	1	Co-purification
ERB1	YMR049C	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Co-purification
HAS1	YMR290C	ATP-dependent RNA helicase	physical	1	1	1	Co-purification
NOG1	YPL093W	Putative GTPase	physical	1	1	1	Co-purification
NSA1	YGL111W	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Co-purification
RPL10	YLR075W	Ribosomal 60S subunit protein L10	physical	1	1	1	Co-purification
RPL16A	YIL133C	Ribosomal 60S subunit protein L16A	physical	1	1	1	Co-purification
RPL17A	YKL180W	Ribosomal 60S subunit protein L17A	physical	1	1	1	Co-purification
RPL27A	YHR010W	Ribosomal 60S subunit protein L27A	physical	1	1	1	Co-purification
RPL30	YGL030W	Ribosomal 60S subunit protein L30	physical	1	1	1	Co-purification
RPL38	YLR325C	Ribosomal 60S subunit protein L38	physical	1	1	1	Co-purification
RLP7	YNL002C	Nucleolar protein similar to large ribosomal subunit L7 proteins	physical	1	1	1	Affinity Capture-MS
RRP1	YDR087C	Essential evolutionarily conserved nucleolar protein	physical	1	1	1	Co-purification
GCD6	YDR211W	Catalytic epsilon subunit of the translation initiation factor eIF2B	physical	1	1	1	Co-purification
NOP9	YJL010C	Essential subunit of U3-containing 90S preribosome	physical	1	1	1	Co-purification
PEX7	YDR142C	Peroxisomal signal receptor for peroxisomal matrix proteins	physical	1	1	1	Co-purification
RSM23	YGL129C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
ADH1	YOL086C	Alcohol dehydrogenase	physical	1	1	1	Co-purification
GON7	YJL184W	Component of the EKC/KEOPS protein complex	physical	1	1	1	Co-purification
NUC1	YJL208C	Major mitochondrial nuclease	physical	1	1	1	Co-purification
AMN1	YBR158W	Modulator of cell separation and mitotic exit	physical	1	1	1	Co-purification
RIX7	YLL034C	Putative ATPase of the AAA family	physical	1	1	1	Co-purification
COR1	YBL045C	Core subunit of the ubiquinol-cytochrome c reductase complex	physical	1	1	1	Co-purification
POP1	YNL221C	Subunit of RNase MRP, nuclear RNase P and telomerase complexes	physical	1	1	1	Co-purification
POP5	YAL033W	Subunit of both RNase MRP and nuclear RNase P	physical	1	1	1	Co-purification
CWC23	YGL128C	Component of a complex containing Cef1p	physical	1	1	1	Co-purification
PRP43	YGL120C	RNA helicase in the DEAH-box family	physical	1	1	1	Co-purification
PRP46	YPL151C	Member of the NineTeen Complex (NTC)	physical	1	1	1	Co-purification
SMD3	YLR147C	Core Sm protein Sm D3	physical	1	1	1	Co-purification
NSE4	YDL105W	Component of the SMC5-SMC6 complex	genetic	1	1	1	Negative Genetic
EMW1	YNL313C	Essential conserved protein with a role in cell wall integrity	physical	1	1	1	Co-purification
BRE1	YDL074C	E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-MS
CDC42	YLR229C	Small rho-like GTPase	physical	1	1	1	Co-purification
NOC3	YLR002C	Subunit of a nuclear complex with Noc2p and pre-replicative complexes	physical	1	1	1	Co-purification
NUG1	YER006W	GTPase that associates with nuclear 60S pre-ribosomes	physical	1	1	1	Co-purification
NAF1	YNL124W	RNA-binding protein required for the assembly of box H/ACA snoRNPs	physical	1	1	1	Affinity Capture-MS
ARL1	YBR164C	Soluble GTPase with a role in regulation of membrane traffic	physical	1	1	1	Co-purification
POL5	YEL055C	Protein involved in 60S assembly and pre-40S AFs recycling	physical	1	1	1	Co-purification
NAN1	YPL126W	U3 snoRNP protein	physical	1	1	1	Co-purification
DIP2	YLR129W	Nucleolar protein	physical	1	1	1	Co-purification
PWP2	YCR057C	Conserved 90S pre-ribosomal component	physical	1	1	1	Co-purification
KES1	YPL145C	Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger	physical	1	1	1	Co-purification
ARC1	YGL105W	Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases	physical	1	1	1	Co-purification
GUS1	YGL245W	Glutamyl-tRNA synthetase (GluRS)	physical	1	1	1	Co-purification
KEL3	YPL263C	Cytoplasmic protein of unknown function	physical	1	1	1	Co-purification
DBP3	YGL078C	RNA-Dependent ATPase, member of DExD/H-box family	physical	1	1	1	Co-purification
GAR1	YHR089C	Protein component of the H/ACA snoRNP pseudouridylase complex	physical	1	1	1	Co-purification
NHP2	YDL208W	Protein related to mammalian high mobility group (HMG) proteins	physical	1	1	1	Co-purification
RRP5	YMR229C	RNA binding protein involved in synthesis of 18S and 5.8S rRNAs	physical	1	1	1	Co-purification
ALB1	YJL122W	Shuttling pre-60S factor	physical	1	1	1	Co-purification
MTR4	YJL050W	RNA duplex-sensing translocase	physical	1	1	1	Co-purification
NAT3	YPR131C	Catalytic subunit of the NatB N-terminal acetyltransferase	physical	1	1	1	Co-purification
PUS7	YOR243C	Pseudouridine synthase	physical	1	1	1	Co-purification
RAT1	YOR048C	Nuclear 5' to 3' single-stranded RNA exonuclease	physical	1	1	1	Co-purification
SIT4	YDL047W	Ceramide-activated, type 2A-related serine-threonine phosphatase	physical	1	1	1	Co-purification
LSM5	YER146W	Lsm (Like Sm) protein	physical	1	1	1	Co-purification
LSM1	YJL124C	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
NOP1	YDL014W	Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus	physical	1	1	1	Co-purification
DED1	YOR204W	ATP-dependent DEAD-box RNA helicase with strand-annealing activity	physical	1	1	1	Co-purification
PAB1	YER165W	Poly(A) binding protein	physical	1	1	1	Co-purification
RPS4B	YHR203C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
CDC33	YOL139C	Translation initiation factor eIF4E	physical	1	1	1	Co-purification
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	physical	1	1	1	Co-purification
NPL3	YDR432W	RNA-binding protein	physical	1	1	1	Co-purification
RRP9	YPR137W	Protein involved in pre-rRNA processing	physical	1	1	1	Co-purification
CSL4	YNL232W	Exosome non-catalytic core component	physical	1	1	1	Co-purification
DIS3	YOL021C	Exosome core complex catalytic subunit	physical	1	1	1	Co-purification
RRP4	YHR069C	Exosome non-catalytic core component	physical	1	1	1	Co-purification
RRP4	YHR069C	Exosome non-catalytic core component	genetic	1	1	1	Positive Genetic
RRP40	YOL142W	Exosome non-catalytic core component	physical	1	1	1	Co-purification
RRP43	YCR035C	Exosome non-catalytic core component	physical	1	1	1	Co-purification
RRP45	YDR280W	Exosome non-catalytic core component	physical	1	1	1	Co-purification
RRP42	YDL111C	Exosome non-catalytic core component	physical	1	1	1	Co-purification
RRP46	YGR095C	Exosome non-catalytic core component	physical	1	1	1	Co-purification
RET1	YOR207C	Second-largest subunit of RNA polymerase III	physical	1	1	1	Co-purification
RPC25	YKL144C	RNA polymerase III subunit C25	physical	1	1	1	Co-purification
RPC31	YNL151C	RNA polymerase III subunit C31	physical	1	1	1	Co-purification
RPC34	YNR003C	RNA polymerase III subunit C34	physical	1	1	1	Co-purification
RPO31	YOR116C	RNA polymerase III largest subunit C160	physical	1	1	1	Co-purification
RPA190	YOR341W	RNA polymerase I largest subunit A190	physical	1	1	1	Co-purification
RPA49	YNL248C	RNA polymerase I subunit A49	physical	1	1	1	Co-purification
RPB7	YDR404C	RNA polymerase II subunit B16	physical	1	1	1	Co-purification
RPA135	YPR010C	RNA polymerase I second largest subunit A135	physical	1	1	1	Co-purification
FMP52	YER004W	Protein of unknown function	physical	1	1	1	Co-purification
RPL3	YOR063W	Ribosomal 60S subunit protein L3	physical	1	1	1	Co-purification
RPL3	YOR063W	Ribosomal 60S subunit protein L3	genetic	1	1	1	Synthetic Lethality
RRB1	YMR131C	Specific assembly chaperone for ribosomal protein Rpl3p	physical	1	1	1	Co-purification
CBC2	YPL178W	Small subunit of the heterodimeric cap binding complex with Sto1p	physical	1	1	1	Co-purification
GCD11	YER025W	Gamma subunit of the translation initiation factor eIF2	physical	1	1	1	Co-purification
ARP7	YPR034W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	physical	1	1	1	Co-purification
ARP9	YMR033W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	physical	1	1	1	Co-purification
NPL6	YMR091C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Co-purification
RSC2	YLR357W	Component of the RSC chromatin remodeling complex	physical	1	1	1	Co-purification
RSC4	YKR008W	Component of the RSC chromatin remodeling complex	physical	1	1	1	Co-purification
MED7	YOL135C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Co-purification
SRB5	YGR104C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-MS
SNP1	YIL061C	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	1	1	1	Co-purification
PWP1	YLR196W	Protein with WD-40 repeats involved in rRNA processing	physical	1	1	1	Co-purification
CEX1	YOR112W	Component of nuclear aminoacylation-dependent tRNA export pathway	physical	1	1	1	Co-purification
SPT16	YGL207W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	1	1	1	Co-purification
RPN5	YDL147W	Subunit of the CSN and 26S proteasome lid complexes	physical	1	1	1	Co-purification
RPN6	YDL097C	Essential, non-ATPase regulatory subunit of the 26S proteasome lid	physical	1	1	1	Co-purification
RPN6	YDL097C	Essential, non-ATPase regulatory subunit of the 26S proteasome lid	genetic	1	1	1	Negative Genetic
RPN12	YFR052W	Subunit of the 19S regulatory particle of the 26S proteasome lid	physical	1	1	1	Co-purification
RPN3	YER021W	Essential non-ATPase regulatory subunit of the 26S proteasome lid	physical	1	1	1	Co-purification
RPN8	YOR261C	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	1	1	1	Co-purification
RPN7	YPR108W	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	1	1	1	Co-purification
RPN9	YDR427W	Non-ATPase regulatory subunit of the 26S proteasome	physical	1	1	1	Co-purification
RPT1	YKL145W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Co-purification
RPT1	YKL145W	ATPase of the 19S regulatory particle of the 26S proteasome	genetic	1	1	1	Negative Genetic
RPT2	YDL007W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Co-purification
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Co-purification
RPT3	YDR394W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Co-purification
PRT1	YOR361C	eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Co-purification
ACT1	YFL039C	Actin, structural protein in cytoskeleton	physical	1	1	1	Co-purification
ACT1	YFL039C	Actin, structural protein in cytoskeleton	genetic	1	1	1	Negative Genetic
KAP95	YLR347C	Karyopherin beta	physical	1	1	1	Co-purification
SRP1	YNL189W	Karyopherin alpha homolog	physical	1	1	1	Co-purification
RLI1	YDR091C	Essential Fe-S protein	physical	1	1	1	Co-purification
MPE1	YKL059C	Subunit of CPF cleavage and polyadenylation factor and E3 Ub-ligase	physical	1	1	1	Co-purification
CFT1	YDR301W	RNA-binding subunit of the mRNA cleavage and polyadenylation factor	physical	1	1	1	Co-purification
PFS2	YNL317W	Integral subunit of the pre-mRNA CPF complex	physical	1	1	1	Co-purification
PTA1	YAL043C	Subunit of holo-CPF	physical	1	1	1	Co-purification
IMD2	YHR216W	Inosine monophosphate dehydrogenase	physical	1	1	1	Co-purification
IMD3	YLR432W	Inosine monophosphate dehydrogenase	physical	1	1	1	Co-purification
PRE10	YOR362C	Alpha 7 subunit of the 20S proteasome	physical	1	1	1	Co-purification
PRE2	YPR103W	Beta 5 subunit of the 20S proteasome	physical	1	1	1	Co-purification
PRE5	YMR314W	Alpha 6 subunit of the 20S proteasome	physical	1	1	1	Co-purification
PRE6	YOL038W	Alpha 4 subunit of the 20S proteasome	physical	1	1	1	Co-purification
PRE3	YJL001W	Beta 1 subunit of the 20S proteasome	physical	1	1	1	Co-purification
PRE7	YBL041W	Beta 6 subunit of the 20S proteasome	physical	1	1	1	Co-purification
PRE8	YML092C	Alpha 2 subunit of the 20S proteasome	physical	1	1	1	Co-purification
AAH1	YNL141W	Adenine deaminase (adenine aminohydrolase)	physical	1	1	1	Co-purification
ALA1	YOR335C	Cytoplasmic and mitochondrial alanyl-tRNA synthetase	physical	1	1	1	Co-purification
BCP1	YDR361C	Essential nuclear chaperone for ribosomal protein Rpl23p	physical	1	1	1	Co-purification
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	Co-purification
LSG1	YGL099W	Putative GTPase involved in 60S ribosomal subunit biogenesis	physical	1	1	1	Co-purification
KAP104	YBR017C	Transportin or cytosolic karyopherin beta 2	physical	1	1	1	Co-purification
NAB2	YGL122C	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-MS
NAM7	YMR080C	ATP-dependent RNA helicase of the SFI superfamily	physical	1	1	1	Co-purification
NUP82	YJL061W	Linker nucleoporin component of the nuclear pore complex (NPC)	physical	1	1	1	Co-purification
PUS4	YNL292W	Pseudouridine synthase	physical	1	1	1	Co-purification
RCL1	YOL010W	Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis	physical	1	1	1	Co-purification
LHP1	YDL051W	RNA binding protein required for maturation of tRNA and U6 snRNA	physical	1	1	1	Co-purification
RTT10	YPL183C	WD40 domain-containing protein involved in endosomal recycling	physical	1	1	1	Co-purification
RTT10	YPL183C	WD40 domain-containing protein involved in endosomal recycling	genetic	1	1	1	Negative Genetic
OLA1	YBR025C	P-loop ATPase with similarity to human OLA1 and bacterial YchF	physical	1	1	1	Co-purification
EFT2	YDR385W	Elongation factor 2 (EF-2), also encoded by EFT1	physical	1	1	1	Co-purification
ABD1	YBR236C	Methyltransferase	physical	1	1	1	Co-purification
ACC1	YNR016C	Acetyl-CoA carboxylase, biotin containing enzyme	physical	1	1	1	Co-purification
ADE13	YLR359W	Adenylosuccinate lyase	physical	1	1	1	Co-purification
ADE4	YMR300C	Phosphoribosylpyrophosphate amidotransferase (PRPPAT)	physical	1	1	1	Co-purification
AOS1	YPR180W	Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Uba2p	physical	1	1	1	Co-purification
APL1	YJR005W	Beta-adaptin	physical	1	1	1	Co-purification
APL3	YBL037W	Alpha-adaptin	physical	1	1	1	Co-purification
APL6	YGR261C	Beta3-like subunit of the yeast AP-3 complex	physical	1	1	1	Co-purification
ARC15	YIL062C	Subunit of the ARP2/3 complex	physical	1	1	1	Co-purification
ARC18	YLR370C	Subunit of the ARP2/3 complex	physical	1	1	1	Co-purification
ARC19	YKL013C	Subunit of the ARP2/3 complex	physical	1	1	1	Co-purification
ARC35	YNR035C	Subunit of the ARP2/3 complex	physical	1	1	1	Co-purification
ARC40	YBR234C	Subunit of the ARP2/3 complex	physical	1	1	1	Co-purification
ARO1	YDR127W	Pentafunctional arom protein	physical	1	1	1	Co-purification
ARP2	YDL029W	Essential component of the Arp2/3 complex	physical	1	1	1	Co-purification
ARP3	YJR065C	Essential component of the Arp2/3 complex	physical	1	1	1	Co-purification
BAT1	YHR208W	Mitochondrial branched-chain amino acid (BCAA) aminotransferase	physical	1	1	1	Co-purification
BEM1	YBR200W	Protein containing SH3-domains	physical	1	1	1	Co-purification
BET3	YKR068C	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Co-purification
BET2	YPR176C	Beta subunit of Type II geranylgeranyltransferase	physical	1	1	1	Co-purification
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	physical	1	1	1	Co-purification
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	genetic	1	1	1	Phenotypic Suppression
BEM2	YER155C	Rho GTPase activating protein (RhoGAP)	physical	1	1	1	Co-purification
CAP1	YKL007W	Alpha subunit of the capping protein heterodimer (Cap1p and Cap2p)	physical	1	1	1	Co-purification
CAR1	YPL111W	Arginase, catabolizes arginine to ornithine and urea	physical	1	1	1	Co-purification
CCA1	YER168C	ATP (CTP):tRNA-specific tRNA nucleotidyltransferase	physical	1	1	1	Co-purification
CAF40	YNL288W	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	Co-purification
CDC14	YFR028C	Protein phosphatase required for mitotic exit	physical	1	1	1	Co-purification
BOI2	YER114C	Protein involved in polar growth	physical	1	1	1	Co-purification
CDC28	YBR160W	Cyclin-dependent kinase (CDK) catalytic subunit	physical	1	1	1	Co-purification
CDC10	YCR002C	Component of the septin ring, required for cytokinesis	physical	1	1	1	Co-purification
CDC11	YJR076C	Component of the septin ring that is required for cytokinesis	physical	1	1	1	Co-purification
CDC11	YJR076C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Negative Genetic
CDC12	YHR107C	Component of the septin ring that is required for cytokinesis	physical	1	1	1	Co-purification
ATP11	YNL315C	Molecular chaperone	physical	1	1	1	Co-purification
CDC36	YDL165W	Component of the CCR4-NOT core complex, involved in mRNA decapping	physical	1	1	1	Co-purification
CDC45	YLR103C	DNA replication initiation factor	physical	1	1	1	Co-purification
ERG26	YGL001C	C-3 sterol dehydrogenase	physical	1	1	1	Co-purification
CDC55	YGL190C	Regulatory subunit B of protein phosphatase 2A (PP2A)	physical	1	1	1	Co-purification
HIS3	YOR202W	Imidazoleglycerol-phosphate dehydratase	physical	1	1	1	Co-purification
IPI3	YNL182C	Component of the Rix1 complex and pre-replicative complexes (pre-RCs)	physical	1	1	1	Co-purification
NOG2	YNR053C	Putative GTPase	physical	1	1	1	Co-purification
CEG1	YGL130W	Guanylyltransferase involved in mRNA 5' capping	physical	1	1	1	Co-purification
AVO1	YOL078W	Component of the membrane-bound TORC2 complex	physical	1	1	1	Co-purification
CHC1	YGL206C	Clathrin heavy chain	physical	1	1	1	Co-purification
CLP1	YOR250C	Component of the cleavage and polyadenylation factor I (CF I)	physical	1	1	1	Co-purification
CNS1	YBR155W	TPR-containing co-chaperone	physical	1	1	1	Affinity Capture-MS
COP1	YDL145C	Alpha subunit of COPI vesicle coatomer complex	physical	1	1	1	Co-purification
COX4	YGL187C	Subunit IV of cytochrome c oxidase	physical	1	1	1	Co-purification
COX5A	YNL052W	Subunit Va of cytochrome c oxidase	physical	1	1	1	Co-purification
CPR1	YDR155C	Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Co-purification
CYS4	YGR155W	Cystathionine beta-synthase	physical	1	1	1	Co-purification
CIA2	YHR122W	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	physical	1	1	1	Co-purification
DOA1	YKL213C	WD-repeat protein involved in ubiquitin-mediated protein degradation	physical	1	1	1	Co-purification
DPB2	YPR175W	Second largest subunit of DNA polymerase II (DNA polymerase epsilon)	physical	1	1	1	Co-purification
ECM1	YAL059W	Pre-ribosomal factor involved in 60S ribosomal protein subunit export	physical	1	1	1	Co-purification
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	physical	1	1	1	Co-purification
EMG1	YLR186W	Methyltransferase for rRNA	physical	1	1	1	Co-purification
EAF3	YPR023C	Component of the Rpd3S histone deacetylase complex	genetic	1	1	1	Negative Genetic
ERG13	YML126C	3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase	physical	1	1	1	Co-purification
EMP24	YGL200C	Component of the p24 complex	physical	1	1	1	Co-purification
ERP1	YAR002C-A	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Co-purification
ERP2	YAL007C	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Co-purification
EXO84	YBR102C	Exocyst subunit with dual roles in exocytosis and spliceosome assembly	physical	1	1	1	Co-purification
FAP1	YNL023C	Protein that binds to Fpr1p	physical	1	1	1	Co-purification
FPR1	YNL135C	Peptidyl-prolyl cis-trans isomerase (PPIase)	physical	1	1	1	Co-purification
FRS1	YLR060W	Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase	physical	1	1	1	Co-purification
CCT4	YDL143W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Co-purification
GCN3	YKR026C	Alpha subunit of translation initiation factor eIF2B	physical	1	1	1	Co-purification
GDI1	YER136W	GDP dissociation inhibitor	physical	1	1	1	Co-purification
GGA2	YHR108W	Protein that regulates Arf1p, Arf2p to facilitate Golgi trafficking	physical	1	1	1	Co-purification
GLO3	YER122C	ADP-ribosylation factor GTPase activating protein (ARF GAP)	physical	1	1	1	Co-purification
GTR2	YGR163W	Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex	physical	1	1	1	Co-purification
HAT2	YEL056W	Subunit of the Hat1p-Hat2p histone acetyltransferase complex	physical	1	1	1	Co-purification
GLY1	YEL046C	Threonine aldolase	physical	1	1	1	Co-purification
HHF1	YBR009C	Histone H4	physical	1	1	1	Co-purification
HRT1	YOL133W	RING-H2 domain core subunit of multiple ubiquitin ligase complexes	physical	1	1	1	Co-purification
HIF1	YLL022C	Non-essential component of the HAT-B histone acetyltransferase complex	physical	1	1	1	Co-purification
HSM3	YBR272C	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	1	1	1	Co-purification
HTB2	YBL002W	Histone H2B	physical	1	1	1	Co-purification
IPP1	YBR011C	Cytoplasmic inorganic pyrophosphatase (PPase)	physical	1	1	1	Co-purification
ACK1	YDL203C	Protein that functions in the cell wall integrity pathway	physical	1	1	1	Co-purification
IRR1	YIL026C	Subunit of the cohesin complex	physical	1	1	1	Co-purification
IOC3	YFR013W	Subunit of the Isw1a complex	physical	1	1	1	Co-purification
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	physical	1	1	1	Co-purification
CLU1	YMR012W	Subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Co-purification
KGD2	YDR148C	Dihydrolipoyl transsuccinylase	physical	1	1	1	Co-purification
KIN3	YAR018C	Nonessential serine/threonine protein kinase	physical	1	1	1	Co-purification
ARB1	YER036C	ATPase of the ATP-binding cassette (ABC) family	physical	1	1	1	Co-purification
KRE33	YNL132W	Acetyltransferase required for biogenesis of small ribosomal subunit	physical	1	1	1	Co-purification
MPP10	YJR002W	Component of the SSU processome and 90S preribosome	physical	1	1	1	Co-purification
KRR1	YCL059C	Nucleolar protein required for rRNA synthesis and ribosomal assembly	physical	1	1	1	Affinity Capture-MS
KRS1	YDR037W	Lysyl-tRNA synthetase	physical	1	1	1	Co-purification
END3	YNL084C	EH domain-containing protein involved in endocytosis	physical	1	1	1	Co-purification
CRM1	YGR218W	Nuclear export factor, exportin	physical	1	1	1	Affinity Capture-MS
GFA1	YKL104C	Glutamine-fructose-6-phosphate amidotransferase	physical	1	1	1	Co-purification
DIB1	YPR082C	17-kDa component of the U4/U6aU5 tri-snRNP	physical	1	1	1	Co-purification
LST8	YNL006W	Protein required for the transport of Gap1p	physical	1	1	1	Co-purification
LYS2	YBR115C	Alpha aminoadipate reductase	physical	1	1	1	Co-purification
MAK5	YBR142W	Essential nucleolar protein	physical	1	1	1	Co-purification
MAS1	YLR163C	Beta subunit of the mitochondrial processing protease (MPP)	physical	1	1	1	Co-purification
MCM5	YLR274W	Component of the Mcm2-7 hexameric helicase complex	physical	1	1	1	Co-purification
GAL11	YOL051W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Co-purification
MED1	YPR070W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
MED11	YMR112C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Co-purification
FBA1	YKL060C	Fructose 1,6-bisphosphate aldolase	physical	1	1	1	Co-purification
MED6	YHR058C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Co-purification
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	physical	1	1	1	Co-purification
MRP13	YGR084C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
EHD3	YDR036C	3-hydroxyisobutyryl-CoA hydrolase	physical	1	1	1	Co-purification
MRM1	YOR201C	Ribose methyltransferase	physical	1	1	1	Co-purification
BUD3	YCL014W	Guanine nucleotide exchange factor (GEF) for Cdc42p	physical	1	1	1	Affinity Capture-MS
MRPL16	YBL038W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MRPL13	YKR006C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MRPL20	YKR085C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MRPL28	YDR462W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MRPL36	YBR122C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MRPL7	YDR237W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MRPL8	YJL063C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MRPL9	YGR220C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MRP17	YKL003C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
MRP51	YPL118W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
MRPS5	YBR251W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
HDA3	YPR179C	Subunit of HDA1 histone deacetylase complex	genetic	1	1	1	Negative Genetic
MGM101	YJR144W	Protein with a role in mitochondrial DNA recombinational repair	physical	1	1	1	Co-purification
MSH3	YCR092C	Mismatch repair protein	physical	1	1	1	Co-purification
MSH6	YDR097C	Protein required for mismatch repair in mitosis and meiosis	physical	1	1	1	Co-purification
ATG3	YNR007C	E2-like enzyme	physical	1	1	1	Co-purification
MLC1	YGL106W	Essential light chain for Myo1p	physical	1	1	1	Co-purification
MLC2	YPR188C	Regulatory light chain for the type II myosin Myo1p	physical	1	1	1	Co-purification
CMD1	YBR109C	Calmodulin	physical	1	1	1	Affinity Capture-MS
MAM33	YIL070C	Acidic protein of the mitochondrial matrix	physical	1	1	1	Co-purification
NAM8	YHR086W	RNA binding protein, component of the U1 snRNP protein	physical	1	1	1	Co-purification
HTZ1	YOL012C	Histone variant H2AZ	physical	1	1	1	Co-purification
LYS12	YIL094C	Homo-isocitrate dehydrogenase	physical	1	1	1	Co-purification
NCL1	YBL024W	S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase	physical	1	1	1	Co-purification
IES1	YFL013C	Subunit of the INO80 chromatin remodeling complex	genetic	1	1	1	Negative Genetic
ATG18	YFR021W	Phosphoinositide binding protein	physical	1	1	1	Co-purification
NOT3	YIL038C	Component of the CCR4-NOT core complex, involved in mRNA decapping	physical	1	1	1	Co-purification
AHA1	YDR214W	Co-chaperone that binds Hsp82p and activates its ATPase activity	physical	1	1	1	Co-purification
NPL4	YBR170C	Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase	physical	1	1	1	Co-purification
MRPL15	YLR312W-A	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
NUP116	YMR047C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Co-purification
NUP60	YAR002W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Co-purification
NUP159	YIL115C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
ORC1	YML065W	Largest subunit of the origin recognition complex	physical	1	1	1	Affinity Capture-MS
ORC2	YBR060C	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Co-purification
AFG2	YLR397C	ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex	physical	1	1	1	Co-purification
GIM3	YNL153C	Subunit of the heterohexameric cochaperone prefoldin complex	physical	1	1	1	Co-purification
GIM5	YML094W	Subunit of the heterohexameric cochaperone prefoldin complex	physical	1	1	1	Co-purification
PAP1	YKR002W	Poly(A) polymerase	physical	1	1	1	Co-purification
HMO1	YDR174W	Chromatin associated high mobility group (HMG) family member	physical	1	1	1	Co-purification
PCF11	YDR228C	mRNA 3' end processing factor	physical	1	1	1	Co-purification
MGS1	YNL218W	Protein with DNA-dependent ATPase and ssDNA annealing activities	physical	1	1	1	Co-purification
APM1	YPL259C	Mu1-like medium subunit of the AP-1 complex	physical	1	1	1	Co-purification
LPD1	YFL018C	Dihydrolipoamide dehydrogenase	physical	1	1	1	Co-purification
PDA1	YER178W	E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex	physical	1	1	1	Co-purification
PDB1	YBR221C	E1 beta subunit of the pyruvate dehydrogenase (PDH) complex	physical	1	1	1	Co-purification
AAP1	YHR047C	Arginine/alanine amino peptidase	physical	1	1	1	Co-purification
PGK1	YCR012W	3-phosphoglycerate kinase	physical	1	1	1	Co-purification
IDH2	YOR136W	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	1	1	1	Co-purification
POL1	YNL102W	Catalytic subunit of the DNA polymerase I alpha-primase complex	physical	1	1	1	Co-purification
POL12	YBL035C	B subunit of DNA polymerase alpha-primase complex	physical	1	1	1	Co-purification
POP2	YNR052C	Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation	physical	1	1	1	Co-purification
POP7	YBR167C	Subunit of RNase MRP, nuclear RNase P and telomerase	physical	1	1	1	Co-purification
PPH3	YDR075W	Catalytic subunit of protein phosphatase PP4 complex	physical	1	1	1	Co-purification
BLM10	YFL007W	Proteasome activator	physical	1	1	1	Co-purification
PRE4	YFR050C	Beta 7 subunit of the 20S proteasome	physical	1	1	1	Co-purification
GLE2	YER107C	RNA export factor associated with the nuclear pore complex (NPC)	physical	1	1	1	Co-purification
PRO2	YOR323C	Gamma-glutamyl phosphate reductase	physical	1	1	1	Co-purification
PRP28	YDR243C	Pre-mRNA splicing factor	physical	1	1	1	Co-purification
MRPL38	YKL170W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
PRP6	YBR055C	Splicing factor	physical	1	1	1	Co-purification
NUD1	YOR373W	Mitotic exit network (MEN) scaffold protein	physical	1	1	1	Co-purification
PTC3	YBL056W	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Co-purification
PAA1	YDR071C	Polyamine acetyltransferase	physical	1	1	1	Co-purification
PTC4	YBR125C	Cytoplasmic type 2C protein phosphatase (PP2C)	physical	1	1	1	Co-purification
NRD1	YNL251C	RNA-binding subunit of Nrd1 complex	physical	1	1	1	Co-purification
NRP1	YDL167C	Putative RNA binding protein of unknown function	physical	1	1	1	Co-purification
POL2	YNL262W	Catalytic subunit of DNA polymerase (II) epsilon	physical	1	1	1	Co-purification
DBP8	YHR169W	ATPase, putative RNA helicase of the DEAD-box family	physical	1	1	1	Co-purification
HTA2	YBL003C	Histone H2A	physical	1	1	1	Affinity Capture-MS
IMP4	YNL075W	Component of the SSU processome	physical	1	1	1	Co-purification
MVD1	YNR043W	Mevalonate pyrophosphate decarboxylase	physical	1	1	1	Co-purification
PRE9	YGR135W	Alpha 3 subunit of the 20S proteasome	physical	1	1	1	Co-purification
MIR1	YJR077C	Mitochondrial phosphate carrier	physical	1	1	1	Co-purification
RAD23	YEL037C	Protein with ubiquitin-like N terminus	physical	1	1	1	Co-purification
RAD3	YER171W	5' to 3' DNA helicase	physical	1	1	1	Co-purification
CPA2	YJR109C	Large subunit of carbamoyl phosphate synthetase	physical	1	1	1	Co-purification
RAD51	YER095W	Strand exchange protein	physical	1	1	1	Co-purification
RAI1	YGL246C	Nuclear decapping endonuclease	physical	1	1	1	Co-purification
GPM1	YKL152C	Tetrameric phosphoglycerate mutase	physical	1	1	1	Co-purification
RAM1	YDL090C	Beta subunit of the CAAX farnesyltransferase (FTase)	physical	1	1	1	Co-purification
ADE57	YGL234W	Bifunctional enzyme of 'de novo' purine nucleotide pathway	physical	1	1	1	Co-purification
REF2	YDR195W	RNA-binding protein	physical	1	1	1	Co-purification
PTI1	YGR156W	Essential component of CPF (cleavage and polyadenylation factor)	physical	1	1	1	Co-purification
RET2	YFR051C	Delta subunit of the coatomer complex (COPI)	physical	1	1	1	Co-purification
RAD52	YML032C	Protein involved in homologous recombination	physical	1	1	1	Co-purification
RFA1	YAR007C	Subunit of heterotrimeric Replication Protein A (RPA)	physical	1	1	1	Co-purification
RFC2	YJR068W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Co-purification
RFC1	YOR217W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Co-purification
RFC3	YNL290W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Co-purification
RFC5	YBR087W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Co-purification
RNA14	YMR061W	Component of the cleavage and polyadenylation factor I (CF I)	physical	1	1	1	Co-purification
RFA3	YJL173C	Subunit of heterotrimeric Replication Protein A (RPA)	physical	1	1	1	Co-purification
MRPL6	YHR147C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
ROX3	YBL093C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Co-purification
RPA12	YJR063W	RNA polymerase I subunit A12.2	physical	1	1	1	Co-purification
RPB8	YOR224C	RNA polymerase subunit ABC14.5	physical	1	1	1	Co-purification
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	physical	1	1	1	Co-purification
RCO1	YMR075W	Essential component of the Rpd3S histone deacetylase complex	physical	1	1	1	Affinity Capture-MS
RKM1	YPL208W	SET-domain lysine-N-methyltransferase	physical	1	1	1	Co-purification
ADE3	YGR204W	Cytoplasmic trifunctional enzyme	physical	1	1	1	Co-purification
RPL2A	YFR031C-A	Ribosomal 60S subunit protein L2A	physical	1	1	1	Co-purification
NAS6	YGR232W	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	1	1	1	Affinity Capture-MS
PUP3	YER094C	Beta 3 subunit of the 20S proteasome	physical	1	1	1	Co-purification
MAF1	YDR005C	Highly conserved negative regulator of RNA polymerase III	physical	1	1	1	Co-purification
CSN9	YDR179C	Subunit of the Cop9 signalosome	physical	1	1	1	Affinity Capture-MS
PCI8	YIL071C	Possible shared subunit of Cop9 signalosome (CSN) and eIF3	physical	1	1	1	Affinity Capture-MS
RRI1	YDL216C	Catalytic subunit of the COP9 signalosome (CSN) complex	physical	1	1	1	Co-purification
MTR3	YGR158C	Exosome non-catalytic core component	physical	1	1	1	Co-purification
PPH21	YDL134C	Catalytic subunit of protein phosphatase 2A, PP2A	physical	1	1	1	Co-purification
SCS2	YER120W	Integral ER membrane protein, regulates phospholipid metabolism	physical	1	1	1	Co-purification
PIL1	YGR086C	Eisosome core component	physical	1	1	1	Co-purification
RSA4	YCR072C	Ribosomal large subunit (60S) assembly factor	physical	1	1	1	Co-purification
PGI1	YBR196C	Glycolytic enzyme phosphoglucose isomerase	physical	1	1	1	Co-purification
NUP120	YKL057C	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	1	1	1	Co-purification
NUP145	YGL092W	Essential protein with distinct roles in two nuclear pore subcomplexes	physical	1	1	1	Co-purification
NUP84	YDL116W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	1	1	1	Co-purification
SEC13	YLR208W	Structural component of 3 complexes	physical	1	1	1	Co-purification
RET3	YPL010W	Zeta subunit of the coatomer complex (COPI)	physical	1	1	1	Co-purification
SEC26	YDR238C	Essential beta-coat protein of the COPI coatomer	physical	1	1	1	Co-purification
SEC27	YGL137W	Essential beta'-coat protein of the COPI coatomer	physical	1	1	1	Co-purification
SEC23	YPR181C	GTPase-activating protein, stimulates the GTPase activity of Sar1p	physical	1	1	1	Co-purification
SAM1	YLR180W	S-adenosylmethionine synthetase	physical	1	1	1	Co-purification
DUG1	YFR044C	Cys-Gly metallo-di-peptidase	physical	1	1	1	Co-purification
SIF2	YBR103W	WD40 repeat-containing subunit of Set3C histone deacetylase complex	physical	1	1	1	Co-purification
ABF2	YMR072W	Mitochondrial DNA-binding protein	physical	1	1	1	Co-purification
RXT3	YDL076C	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Co-purification
SIR2	YDL042C	Conserved NAD+ dependent histone deacetylase of the Sirtuin family	physical	1	1	1	Co-purification
CCT2	YIL142W	Subunit beta of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Co-purification
BZZ1	YHR114W	SH3 domain protein implicated in regulating actin polymerization	physical	1	1	1	Co-purification
ECM25	YJL201W	Endocytic site protein required for stress-induced cell elongation	physical	1	1	1	Co-purification
INP52	YNL106C	Polyphosphatidylinositol phosphatase	physical	1	1	1	Co-purification
SLA1	YBL007C	Cytoskeletal protein binding protein	physical	1	1	1	Co-purification
LSB3	YFR024C-A	Protein containing a C-terminal SH3 domain	physical	1	1	1	Co-purification
SEC17	YBL050W	Alpha-SNAP cochaperone	physical	1	1	1	Co-purification
SLY1	YDR189W	Hydrophilic protein involved in ER/Golgi vesicle trafficking	physical	1	1	1	Co-purification
SLY1	YDR189W	Hydrophilic protein involved in ER/Golgi vesicle trafficking	genetic	1	1	1	Dosage Rescue
CCT8	YJL008C	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Co-purification
PRP9	YDL030W	Subunit of the SF3a splicing factor complex	physical	1	1	1	Co-purification
SMD1	YGR074W	Core Sm protein Sm D1	physical	1	1	1	Co-purification
RSE1	YML049C	Protein involved in pre-mRNA splicing	physical	1	1	1	Co-purification
SME1	YOR159C	Core Sm protein Sm E	physical	1	1	1	Co-purification
GAL83	YER027C	One of three alternate beta-subunits of the Snf1 kinase complex	physical	1	1	1	Co-purification
REG1	YDR028C	Regulatory subunit of type 1 protein phosphatase Glc7p	physical	1	1	1	Affinity Capture-MS
SIP2	YGL208W	One of three alternate beta subunits of the Snf1 kinase complex	physical	1	1	1	Co-purification
SNF12	YNR023W	73 kDa subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Co-purification
SPE3	YPR069C	Spermidine synthase	physical	1	1	1	Co-purification
NAT1	YDL040C	Subunit of protein N-terminal acetyltransferase NatA	physical	1	1	1	Co-purification
NAT1	YDL040C	Subunit of protein N-terminal acetyltransferase NatA	genetic	1	1	1	Synthetic Growth Defect
PFK2	YMR205C	Beta subunit of heterooctameric phosphofructokinase	physical	1	1	1	Co-purification
SPT15	YER148W	TATA-binding protein (TBP)	physical	1	1	1	Co-purification
HFI1	YPL254W	Adaptor protein required for structural integrity of the SAGA complex	physical	1	1	1	Affinity Capture-MS
SGF29	YCL010C	Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes	genetic	1	1	1	Negative Genetic
SEC65	YML105C	Subunit of the signal recognition particle (SRP)	physical	1	1	1	Co-purification
SCP160	YJL080C	Essential RNA-binding G protein effector of mating response pathway	physical	1	1	1	Co-purification
CRN1	YLR429W	Coronin	physical	1	1	1	Co-purification
PTC1	YDL006W	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Co-purification
HEM13	YDR044W	Coproporphyrinogen III oxidase	physical	1	1	1	Co-purification
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	genetic	1	1	1	Negative Genetic
CCT7	YJL111W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Co-purification
CAM1	YPL048W	One of two isoforms of the gamma subunit of eEF1B	physical	1	1	1	Co-purification
EFB1	YAL003W	Translation elongation factor 1 beta	physical	1	1	1	Co-purification
NEW1	YPL226W	Translation termination and ribosome biogenesis factor	physical	1	1	1	Co-purification
RRD2	YPL152W	Peptidyl-prolyl cis/trans-isomerase	physical	1	1	1	Co-purification
RRD2	YPL152W	Peptidyl-prolyl cis/trans-isomerase	genetic	1	1	1	Negative Genetic
BCY1	YIL033C	Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA)	physical	1	1	1	Co-purification
GLN1	YPR035W	Glutamine synthetase (GS)	physical	1	1	1	Co-purification
MCM2	YBL023C	Protein involved in DNA replication	physical	1	1	1	Co-purification
BCK1	YJL095W	MAPKKK acting in the protein kinase C signaling pathway	physical	1	1	1	Affinity Capture-MS
ALT2	YDR111C	Catalytically inactive alanine transaminase	physical	1	1	1	Co-purification
DRE2	YKR071C	Component of the cytosolic Fe-S protein assembly (CIA) machinery	physical	1	1	1	Co-purification
RAV1	YJR033C	Subunit of RAVE complex (Rav1p, Rav2p, Skp1p)	physical	1	1	1	Co-purification
HSE1	YHL002W	Subunit of the endosomal Vps27p-Hse1p complex	physical	1	1	1	Co-purification
BRO1	YPL084W	Cytoplasmic class E vacuolar protein sorting (VPS) factor	physical	1	1	1	Co-purification
PEP5	YMR231W	Histone E3 ligase, component of CORVET membrane tethering complex	physical	1	1	1	Co-purification
BDH2	YAL061W	Putative medium-chain alcohol dehydrogenase with similarity to BDH1	physical	1	1	1	Co-purification
RSM7	YJR113C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
SET1	YHR119W	Histone methyltransferase, subunit of the COMPASS (Set1C) complex	physical	1	1	1	Co-purification
HEK2	YBL032W	RNA binding protein involved in asymmetric localization of ASH1 mRNA	physical	1	1	1	Co-purification
DIM1	YPL266W	Essential 18S rRNA dimethylase (dimethyladenosine transferase)	physical	1	1	1	Co-purification
RIO2	YNL207W	Essential serine kinase involved in the processing of 20S pre-rRNA	physical	1	1	1	Co-purification
PNO1	YOR145C	Essential nucleolar protein required for pre-18S rRNA processing	physical	1	1	1	Co-purification
DOT6	YER088C	Protein involved in rRNA and ribosome biogenesis	physical	1	1	1	Co-purification
GET3	YDL100C	Guanine nucleotide exchange factor for Gpa1p	physical	1	1	1	Co-purification
ROK1	YGL171W	RNA-dependent ATPase	physical	1	1	1	Co-purification
BNA3	YJL060W	Kynurenine aminotransferase	physical	1	1	1	Co-purification
LAP2	YNL045W	Leucyl aminopeptidase yscIV with epoxide hydrolase activity	physical	1	1	1	Co-purification
ATP2	YJR121W	Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Co-purification
LYS9	YNR050C	Saccharopine dehydrogenase (NADP+, L-glutamate-forming)	physical	1	1	1	Co-purification
GET4	YOR164C	Protein involved in inserting tail-anchored proteins into ER membranes	physical	1	1	1	Co-purification
EDC3	YEL015W	Non-essential conserved protein with a role in mRNA decapping	physical	1	1	1	Co-purification
GPH1	YPR160W	Glycogen phosphorylase required for the mobilization of glycogen	physical	1	1	1	Co-purification
DNM1	YLL001W	Dynamin-related GTPase involved in mitochondrial organization	physical	1	1	1	Co-purification
ATP4	YPL078C	Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Co-purification
EGD2	YHR193C	Alpha subunit of the nascent polypeptide-associated complex (NAC)	physical	1	1	1	Co-purification
EGD2	YHR193C	Alpha subunit of the nascent polypeptide-associated complex (NAC)	genetic	1	1	1	Synthetic Growth Defect
CRZ1	YNL027W	Transcription factor, activates transcription of stress response genes	physical	1	1	1	Co-purification
ACO1	YLR304C	Aconitase	physical	1	1	1	Affinity Capture-MS
RHO2	YNL090W	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	physical	1	1	1	Co-purification
AKL1	YBR059C	Ser/Thr protein kinase	physical	1	1	1	Co-purification
LSP1	YPL004C	Eisosome core component	physical	1	1	1	Co-purification
ATP3	YBR039W	Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Co-purification
FIN1	YDR130C	Spindle pole body-related intermediate filament protein	physical	1	1	1	Affinity Capture-Western
MDH1	YKL085W	Mitochondrial malate dehydrogenase	physical	1	1	1	Co-purification
PYC2	YBR218C	Pyruvate carboxylase isoform	physical	1	1	1	Co-purification
NGL2	YMR285C	Protein involved in 5.8S rRNA processing	physical	1	1	1	Co-purification
GND1	YHR183W	6-phosphogluconate dehydrogenase (decarboxylating)	physical	1	1	1	Co-purification
PYC1	YGL062W	Pyruvate carboxylase isoform	physical	1	1	1	Co-purification
ISA2	YPR067W	Protein required for maturation of mitochondrial [4Fe-4S] proteins	physical	1	1	1	Co-purification
PHO85	YPL031C	Cyclin-dependent kinase	physical	1	1	1	Co-purification
CDC5	YMR001C	Polo-like kinase required for mitotic exit	physical	1	1	1	Co-purification
ADO1	YJR105W	Adenosine kinase	physical	1	1	1	Co-purification
RNR2	YJL026W	Ribonucleotide-diphosphate reductase (RNR), small subunit	physical	1	1	1	Co-purification
PPQ1	YPL179W	Protein phosphatase that regulates the mating response	physical	1	1	1	Co-purification
GRH1	YDR517W	Acetylated cis-Golgi protein, homolog of human GRASP65	physical	1	1	1	Co-purification
AAC3	YBR085W	Mitochondrial inner membrane ADP/ATP translocator	physical	1	1	1	Co-purification
FOL2	YGR267C	GTP-cyclohydrolase I, catalyzes first step in folic acid biosynthesis	physical	1	1	1	Co-purification
GPP1	YIL053W	Constitutively expressed DL-glycerol-3-phosphate phosphatase	physical	1	1	1	Co-purification
DCS1	YLR270W	Non-essential hydrolase involved in mRNA decapping	physical	1	1	1	Co-purification
ARF1	YDL192W	ADP-ribosylation factor	physical	1	1	1	Co-purification
IDH1	YNL037C	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	1	1	1	Co-purification
PLN1	YKR046C	Perilipin, involved in formation and stability of lipid droplets	physical	1	1	1	Co-purification
PLN1	YKR046C	Perilipin, involved in formation and stability of lipid droplets	genetic	1	1	1	Negative Genetic
CPR6	YLR216C	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Co-purification
PRB1	YEL060C	Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity	physical	1	1	1	Co-purification
SDH2	YLL041C	Iron-sulfur protein subunit of succinate dehydrogenase	physical	1	1	1	Co-purification
SER1	YOR184W	3-phosphoserine aminotransferase	physical	1	1	1	Co-purification
AIM2	YAL049C	Cytoplasmic protein involved in mitochondrial function or organization	physical	1	1	1	Co-purification
RTK1	YDL025C	Putative protein kinase, potentially phosphorylated by Cdc28p	physical	1	1	1	Co-purification
DMA2	YNL116W	Ubiquitin-protein ligase (E3)	physical	1	1	1	Co-purification
KIN1	YDR122W	S/T protein kinase	physical	1	1	1	Co-purification
KIN1	YDR122W	S/T protein kinase	genetic	1	1	1	Dosage Rescue
BUB2	YMR055C	Mitotic exit network regulator	physical	1	1	1	Co-purification
MGE1	YOR232W	Mitochondrial matrix cochaperone	physical	1	1	1	Co-purification
SAC6	YDR129C	Fimbrin, actin-bundling protein	physical	1	1	1	Co-purification
HTB1	YDR224C	Histone H2B	physical	1	1	1	Co-purification
CNA1	YLR433C	Calcineurin A	physical	1	1	1	Co-purification
CMP2	YML057W	Calcineurin A	physical	1	1	1	Co-purification
CNB1	YKL190W	Calcineurin B	physical	1	1	1	Co-purification
GDE1	YPL110C	Glycerophosphocholine (GroPCho) phosphodiesterase	physical	1	1	1	Co-purification
GSP2	YOR185C	GTP binding protein (mammalian Ranp homolog)	physical	1	1	1	Co-purification
DPS1	YLL018C	Aspartyl-tRNA synthetase, primarily cytoplasmic	physical	1	1	1	Co-purification
GSP1	YLR293C	Ran GTPase	physical	1	1	1	Co-purification
PBS2	YJL128C	MAP kinase kinase of the HOG signaling pathway	physical	1	1	1	Co-purification
FAA4	YMR246W	Long chain fatty acyl-CoA synthetase	physical	1	1	1	Co-purification
ARO4	YBR249C	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Co-purification
OYE2	YHR179W	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	physical	1	1	1	Co-purification
PST2	YDR032C	FMN-dependent NAD(P)H:quinone oxidoreductase	physical	1	1	1	Co-purification
POR1	YNL055C	Mitochondrial porin (voltage-dependent anion channel)	physical	1	1	1	Co-purification
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	physical	1	1	1	Co-purification
ILV5	YLR355C	Acetohydroxyacid reductoisomerase and mtDNA binding protein	physical	1	1	1	Co-purification
GID7	YCL039W	Subunit of GID Complex that binds directly to central component Vid30p	physical	1	1	1	Affinity Capture-MS
FKH1	YIL131C	Forkhead family transcription factor	physical	1	1	1	Co-purification
FDO1	YMR144W	Protein involved in directionality of mating type switching	physical	1	1	1	Co-purification
DIG2	YDR480W	MAP kinase-responsive inhibitor of the Ste12p transcription factor	physical	1	1	1	Co-purification
PRO1	YDR300C	Gamma-glutamyl kinase	physical	1	1	1	Co-purification
APM3	YBR288C	Mu3-like subunit of the clathrin associated protein complex (AP-3)	physical	1	1	1	Co-purification
AAT2	YLR027C	Cytosolic aspartate aminotransferase involved in nitrogen metabolism	physical	1	1	1	Co-purification
DUN1	YDL101C	Cell-cycle checkpoint S/T protein kinase	physical	1	1	1	Co-purification
SEC53	YFL045C	Phosphomannomutase	physical	1	1	1	Co-purification
CHK1	YBR274W	Serine/threonine kinase and DNA damage checkpoint effector	physical	1	1	1	Co-purification
BOL2	YGL220W	Cytosolic protein involved in repression of iron regulon transcription	physical	1	1	1	Co-purification
CAF120	YNL278W	Part of the CCR4-NOT transcriptional regulatory complex	physical	1	1	1	Co-purification
CCT5	YJR064W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Co-purification
QCR2	YPR191W	Subunit 2 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Co-purification
EGD1	YPL037C	Subunit beta1 of the nascent polypeptide-associated complex (NAC)	genetic	1	1	1	Synthetic Growth Defect
CDC9	YDL164C	DNA ligase I found in nucleus and mitochondria	physical	1	1	1	Co-purification
ADK1	YDR226W	Adenylate kinase, required for purine metabolism	physical	1	1	1	Co-purification
PCL7	YIL050W	Pho85p cyclin of the Pho80p subfamily	physical	1	1	1	Co-purification
PHO81	YGR233C	Cyclin-dependent kinase (CDK) inhibitor	physical	1	1	1	Co-purification
CLN1	YMR199W	G1 cyclin involved in regulation of the cell cycle	physical	1	1	1	Co-purification
COF1	YLL050C	Cofilin, involved in pH-dependent actin filament depolarization	physical	1	1	1	Co-purification
GPD2	YOL059W	NAD-dependent glycerol 3-phosphate dehydrogenase	physical	1	1	1	Co-purification
GPD1	YDL022W	NAD-dependent glycerol-3-phosphate dehydrogenase	physical	1	1	1	Co-purification
FAR1	YJL157C	CDK inhibitor and nuclear anchor	physical	1	1	1	Co-purification
PRS3	YHL011C	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Co-purification
AAC1	YMR056C	Mitochondrial inner membrane ADP/ATP translocator	physical	1	1	1	Co-purification
SES1	YDR023W	Cytosolic seryl-tRNA synthetase	physical	1	1	1	Co-purification
HSP104	YLL026W	Disaggregase	physical	1	1	1	Co-purification
RAS1	YOR101W	GTPase involved in G-protein signaling in adenylate cyclase activation	physical	1	1	1	Co-purification
AXL1	YPR122W	Haploid specific endoprotease of a-factor mating pheromone	physical	1	1	1	Co-purification
DBF20	YPR111W	Ser/Thr kinase involved in late nuclear division	physical	1	1	1	Co-purification
PET9	YBL030C	Major ADP/ATP carrier of the mitochondrial inner membrane	physical	1	1	1	Co-purification
PET9	YBL030C	Major ADP/ATP carrier of the mitochondrial inner membrane	genetic	1	1	1	Dosage Rescue
ERG27	YLR100W	3-keto sterol reductase	physical	1	1	1	Co-purification
ARG4	YHR018C	Argininosuccinate lyase	physical	1	1	1	Co-purification
LIA1	YJR070C	Deoxyhypusine hydroxylase	physical	1	1	1	Co-purification
LIA1	YJR070C	Deoxyhypusine hydroxylase	genetic	1	1	1	Negative Genetic
MAE1	YKL029C	Mitochondrial malic enzyme	physical	1	1	1	Co-purification
SEC18	YBR080C	AAA ATPase and SNARE disassembly chaperone	physical	1	1	1	Co-purification
AYR1	YIL124W	Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase	physical	1	1	1	Co-purification
PBR1	YNL181W	Putative oxidoreductase	physical	1	1	1	Co-purification
PRO3	YER023W	Delta 1-pyrroline-5-carboxylate reductase	physical	1	1	1	Co-purification
INM1	YHR046C	Inositol monophosphatase	physical	1	1	1	Co-purification
CBK1	YNL161W	Serine/threonine protein kinase of the the RAM signaling network	physical	1	1	1	Co-purification
SOD2	YHR008C	Mitochondrial manganese superoxide dismutase	physical	1	1	1	Co-purification
MTC5	YDR128W	Subunit of SEACAT, a subcomplex of the SEA complex	physical	1	1	1	Co-purification
APT1	YML022W	Adenine phosphoribosyltransferase	physical	1	1	1	Co-purification
DLD3	YEL071W	2-hydroxyglutarate transhydrogenase, and minor D-lactate dehydrogenase	physical	1	1	1	Co-purification
ACS2	YLR153C	Acetyl-coA synthetase isoform	physical	1	1	1	Co-purification
ERG10	YPL028W	Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase)	physical	1	1	1	Co-purification
RHO1	YPR165W	GTP-binding protein of the rho subfamily of Ras-like proteins	physical	1	1	1	Co-purification
FUM1	YPL262W	Fumarase	physical	1	1	1	Co-purification
MET30	YIL046W	F-box protein containing five copies of the WD40 motif	physical	1	1	1	Co-purification
MRS6	YOR370C	Rab escort protein	physical	1	1	1	Co-purification
CDC20	YGL116W	Activator of anaphase-promoting complex/cyclosome (APC/C)	physical	1	1	1	Co-purification
CCT3	YJL014W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Co-purification
LAF1	YMR102C	Sterol-binding beta-propeller protein	physical	1	1	1	Co-purification
HEM15	YOR176W	Ferrochelatase	physical	1	1	1	Co-purification
KAP122	YGL016W	Karyopherin beta	physical	1	1	1	Co-purification
KAP122	YGL016W	Karyopherin beta	genetic	1	1	1	Negative Genetic
DUG2	YBR281C	Component of glutamine amidotransferase (GATase II)	physical	1	1	1	Co-purification
PSH1	YOL054W	E3 ubiquitin ligase targeting centromere-binding protein Cse4p	physical	1	1	1	Co-purification
AIP1	YMR092C	Actin cortical patch component	physical	1	1	1	Co-purification
SKP1	YDR328C	Evolutionarily conserved kinetochore protein	physical	1	1	1	Co-purification
DMA1	YHR115C	Ubiquitin-protein ligase (E3)	physical	1	1	1	Co-purification
ERG1	YGR175C	Squalene epoxidase	physical	1	1	1	Co-purification
MSI1	YBR195C	Subunit of chromatin assembly factor I (CAF-1)	physical	1	1	1	Co-purification
HRT3	YLR097C	Putative SCF-ubiquitin ligase F-box protein	physical	1	1	1	Co-purification
DAS1	YJL149W	Putative SCF ubiquitin ligase F-box protein	physical	1	1	1	Co-purification
GPP2	YER062C	DL-glycerol-3-phosphate phosphatase involved in glycerol biosynthesis	physical	1	1	1	Co-purification
ADH3	YMR083W	Mitochondrial alcohol dehydrogenase isozyme III	physical	1	1	1	Co-purification
RNQ1	YCL028W	[PIN(+)] prion	physical	1	1	1	Co-purification
RPN14	YGL004C	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	1	1	1	Co-purification
CAT5	YOR125C	Protein required for ubiquinone (Coenzyme Q) biosynthesis	physical	1	1	1	Co-purification
SMC6	YLR383W	Subunit of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-MS
IMD4	YML056C	Inosine monophosphate dehydrogenase	physical	1	1	1	Co-purification
SFP1	YLR403W	Regulates transcription of ribosomal protein and biogenesis genes	physical	1	1	1	Co-purification
SGD1	YLR336C	Essential nuclear protein	physical	1	1	1	Co-purification
APE1	YKL103C	Vacuolar aminopeptidase yscI	physical	1	1	1	Co-purification
SHP1	YBL058W	UBX domain-containing substrate adaptor for Cdc48p	physical	1	1	1	Co-purification
ATG7	YHR171W	Autophagy-related protein and dual specificity member of the E1 family	physical	1	1	1	Co-purification
BUD32	YGR262C	Protein kinase	physical	1	1	1	Co-purification
RSP5	YER125W	NEDD4 family E3 ubiquitin ligase	physical	1	1	1	Co-purification
RSP5	YER125W	NEDD4 family E3 ubiquitin ligase	genetic	1	1	1	Negative Genetic
HSL7	YBR133C	Protein arginine N-methyltransferase	physical	1	1	1	Co-purification
CDC60	YPL160W	Cytosolic leucyl tRNA synthetase	physical	1	1	1	Co-purification
GRS1	YBR121C	Cytoplasmic and mitochondrial glycyl-tRNA synthase	physical	1	1	1	Co-purification
PDC5	YLR134W	Minor isoform of pyruvate decarboxylase	physical	1	1	1	Co-purification
ADH4	YGL256W	Alcohol dehydrogenase isoenzyme type IV	physical	1	1	1	Co-purification
ERG20	YJL167W	Farnesyl pyrophosphate synthetase	physical	1	1	1	Co-purification
POL30	YBR088C	Proliferating cell nuclear antigen (PCNA)	physical	1	1	1	Co-purification
PTP3	YER075C	Phosphotyrosine-specific protein phosphatase	physical	1	1	1	Co-purification
CDC37	YDR168W	Essential Hsp90p co-chaperone	physical	1	1	1	Co-purification
RNA1	YMR235C	GTPase activating protein (GAP) for Gsp1p	physical	1	1	1	Co-purification
NUP49	YGL172W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Co-purification
RVS167	YDR388W	Calmodulin-binding actin-associated protein	physical	1	1	1	Co-purification
GPN3	YLR243W	Putative GTPase with a role in biogenesis of RNA pol II and polIII	physical	1	1	1	Co-purification
HOM6	YJR139C	Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)	physical	1	1	1	Co-purification
HOM6	YJR139C	Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)	genetic	1	1	1	Negative Genetic
MAK11	YKL021C	Protein involved in an early step of 60S ribosomal subunit biogenesis	physical	1	1	1	Co-purification
HUL5	YGL141W	Multiubiquitin chain assembly factor (E4)	physical	1	1	1	Co-purification
SAH1	YER043C	S-adenosyl-L-homocysteine hydrolase	physical	1	1	1	Co-purification
ERG6	YML008C	Delta(24)-sterol C-methyltransferase	physical	1	1	1	Co-purification
MET6	YER091C	Cobalamin-independent methionine synthase	physical	1	1	1	Co-purification
NTF2	YER009W	Nuclear envelope protein	physical	1	1	1	Co-purification
GRX1	YCL035C	Glutathione-dependent disulfide oxidoreductase	physical	1	1	1	Co-purification
FRS2	YFL022C	Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase	physical	1	1	1	Co-purification
RPP0	YLR340W	Conserved ribosomal protein P0 of the ribosomal stalk	physical	1	1	1	Co-purification
NPA3	YJR072C	Member of the conserved GPN-loop GTPase family	physical	1	1	1	Affinity Capture-MS
ISN1	YOR155C	Inosine 5'-monophosphate (IMP)-specific 5'-nucleotidase	physical	1	1	1	Co-purification
DNL4	YOR005C	DNA ligase required for nonhomologous end-joining (NHEJ)	physical	1	1	1	Co-purification
PBA1	YLR199C	Protein involved in 20S proteasome assembly	physical	1	1	1	Co-purification
ADD66	YKL206C	Protein involved in 20S proteasome assembly	physical	1	1	1	Co-purification
HIR1	YBL008W	Subunit of the HIR complex	physical	1	1	1	Co-purification
MNP1	YGL068W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
CBP3	YPL215W	Mitochondrial protein required for assembly of cytochrome bc1 complex	physical	1	1	1	Co-purification
PTC7	YHR076W	Type 2C serine/threonine protein phosphatase (PP2C)	physical	1	1	1	Co-purification
HYM1	YKL189W	Component of the RAM signaling network	physical	1	1	1	Co-purification
AIM46	YHR199C	Protein of unknown function	physical	1	1	1	Co-purification
SAR1	YPL218W	ARF family GTPase	physical	1	1	1	Co-purification
CDC15	YAR019C	Hippo-like kinase of the Mitotic Exit Network	physical	1	1	1	Co-purification
MAG2	YLR427W	Cytoplasmic protein of unknown function	physical	1	1	1	Co-purification
HOG1	YLR113W	Mitogen-activated protein kinase involved in osmoregulation	physical	1	1	1	Co-purification
KIN2	YLR096W	S/T protein kinase	genetic	1	1	1	Dosage Rescue
DOG1	YHR044C	2-deoxyglucose-6-phosphate phosphatase	physical	1	1	1	Co-purification
CAC2	YML102W	Subunit of chromatin assembly factor I (CAF-1), with Rlf2p and Msi1p	physical	1	1	1	Co-purification
KSP1	YHR082C	Serine/threonine protein kinase	physical	1	1	1	Co-purification
KSP1	YHR082C	Serine/threonine protein kinase	genetic	1	1	1	Negative Genetic
HIR2	YOR038C	Subunit of HIR nucleosome assembly complex	physical	1	1	1	Co-purification
EMI2	YDR516C	Hexokinase expressed during growth with low glucose levels	physical	1	1	1	Co-purification
FAA1	YOR317W	Long chain fatty acyl-CoA synthetase	physical	1	1	1	Co-purification
ADE17	YMR120C	Enzyme of 'de novo' purine biosynthesis	physical	1	1	1	Co-purification
HHO1	YPL127C	Histone H1, linker histone with roles in meiosis and sporulation	physical	1	1	1	Co-purification
ATE1	YGL017W	Arginyl-tRNA-protein transferase	physical	1	1	1	Co-purification
CTF4	YPR135W	Chromatin-associated protein	physical	1	1	1	Co-purification
DPB11	YJL090C	DNA replication initiation protein	physical	1	1	1	Co-purification
CDC123	YLR215C	Assembly factor for the eIF2 translation initiation factor complex	physical	1	1	1	Co-purification
SLT2	YHR030C	Serine/threonine MAP kinase	physical	1	1	1	Co-purification
SGT1	YOR057W	Cochaperone protein	physical	1	1	1	Co-purification
SKG3	YLR187W	Protein of unknown function	physical	1	1	1	Co-purification
SIS1	YNL007C	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p	physical	1	1	1	Co-purification
MKK2	YPL140C	MAPKK involved in the protein kinase C signaling pathway	physical	1	1	1	Co-purification
BEM4	YPL161C	Protein involved in establishment of cell polarity and bud emergence	physical	1	1	1	Co-purification
KSS1	YGR040W	Mitogen-activated protein kinase (MAPK)	physical	1	1	1	Co-purification
BCK2	YER167W	Serine/threonine-rich protein involved in PKC1 signaling pathway	physical	1	1	1	Co-purification
HOM3	YER052C	Aspartate kinase (L-aspartate 4-P-transferase)	physical	1	1	1	Co-purification
PGM1	YKL127W	Phosphoglucomutase, minor isoform	physical	1	1	1	Co-purification
OPY1	YBR129C	Protein of unknown function	physical	1	1	1	Co-purification
LUG1	YLR352W	Protein of unknown function with similarity to F-box proteins	physical	1	1	1	Co-purification
LSC1	YOR142W	Alpha subunit of succinyl-CoA ligase	physical	1	1	1	Co-purification
KIN28	YDL108W	Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly	physical	1	1	1	Co-purification
KIN28	YDL108W	Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly	genetic	1	1	1	Negative Genetic
NOP13	YNL175C	Nucleolar protein found in preribosomal complexes	physical	1	1	1	Affinity Capture-MS
SEC4	YFL005W	Rab family GTPase	physical	1	1	1	Co-purification
ARF2	YDL137W	ADP-ribosylation factor	physical	1	1	1	Co-purification
MIH1	YMR036C	Protein tyrosine phosphatase	physical	1	1	1	Co-purification
BUD9	YGR041W	Protein involved in bud-site selection	physical	1	1	1	Co-purification
MAP2	YBL091C	Methionine aminopeptidase	physical	1	1	1	Co-purification
AHC1	YOR023C	Subunit of the Ada histone acetyltransferase complex	physical	1	1	1	Co-purification
PAP2	YOL115W	Non-canonical poly(A) polymerase	physical	1	1	1	Co-purification
AIR1	YIL079C	Zinc knuckle protein	physical	1	1	1	Co-purification
MDH2	YOL126C	Cytoplasmic malate dehydrogenase	physical	1	1	1	Co-purification
NUP1	YOR098C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Co-purification
RAD7	YJR052W	Nucleotide excision repair (NER) protein	physical	1	1	1	Co-purification
LYS1	YIR034C	Saccharopine dehydrogenase (NAD+, L-lysine-forming)	physical	1	1	1	Co-purification
FKH2	YNL068C	Forkhead family transcription factor	physical	1	1	1	Co-purification
MCK1	YNL307C	Dual-specificity ser/thr and tyrosine protein kinase	physical	1	1	1	Co-purification
RMT2	YDR465C	Arginine N5 methyltransferase	physical	1	1	1	Co-purification
APA1	YCL050C	AP4A phosphorylase	physical	1	1	1	Co-purification
FAL1	YDR021W	Nucleolar protein required for maturation of 18S rRNA	physical	1	1	1	Co-purification
PTC2	YER089C	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Co-purification
MCM4	YPR019W	Essential helicase component of heterohexameric MCM2-7 complexes	physical	1	1	1	Co-purification
FUB1	YCR076C	Proteasome-binding protein	physical	1	1	1	Co-purification
CIA1	YDR267C	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	physical	1	1	1	Co-purification
DUT1	YBR252W	Deoxyuridine triphosphate diphosphatase (dUTPase)	physical	1	1	1	Co-purification
CPA1	YOR303W	Small subunit of carbamoyl phosphate synthetase	physical	1	1	1	Co-purification
DEF1	YKL054C	RNAPII degradation factor	physical	1	1	1	Affinity Capture-MS
DBF2	YGR092W	Ser/Thr kinase involved in transcription and stress response	physical	1	1	1	Co-purification
BUB3	YOR026W	Kinetochore checkpoint WD40 repeat protein	physical	1	1	1	Co-purification
SKT5	YBL061C	Activator of Chs3p (chitin synthase III) during vegetative growth	physical	1	1	1	Co-purification
MSG5	YNL053W	Dual-specificity protein phosphatase	physical	1	1	1	Co-purification
FUS3	YBL016W	Mitogen-activated serine/threonine protein kinase involved in mating	physical	1	1	1	Co-purification
RNR1	YER070W	Major isoform of large subunit of ribonucleotide-diphosphate reductase	physical	1	1	1	Co-purification
NUP53	YMR153W	FG-nucleoporin component of central core of nuclear pore complex (NPC)	physical	1	1	1	Co-purification
DUF1	YOL087C	Ubiquitin-binding protein of unknown function	physical	1	1	1	Affinity Capture-MS
GBP2	YCL011C	Poly(A+) RNA-binding protein	physical	1	1	1	Co-purification
ISA1	YLL027W	Protein required for maturation of mitochondrial [4Fe-4S] proteins	physical	1	1	1	Co-purification
CLN2	YPL256C	G1 cyclin involved in regulation of the cell cycle	physical	1	1	1	Co-purification
FMP10	YER182W	Putative protein of unknown function	physical	1	1	1	Co-purification
ADH6	YMR318C	NADPH-dependent medium chain alcohol dehydrogenase	physical	1	1	1	Co-purification
ARG1	YOL058W	Arginosuccinate synthetase	physical	1	1	1	Co-purification
PMI40	YER003C	Mannose-6-phosphate isomerase	physical	1	1	1	Co-purification
PRS5	YOL061W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Co-purification
RIM11	YMR139W	Protein kinase	physical	1	1	1	Co-purification
CKI1	YLR133W	Choline kinase	physical	1	1	1	Co-purification
PRS2	YER099C	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Co-purification
DAP1	YPL170W	Heme-binding protein	physical	1	1	1	Co-purification
ARA1	YBR149W	NADP+ dependent arabinose dehydrogenase	physical	1	1	1	Co-purification
ADE6	YGR061C	Formylglycinamidine-ribonucleotide (FGAM)-synthetase	physical	1	1	1	Co-purification
HOM2	YDR158W	Aspartic beta semi-aldehyde dehydrogenase	physical	1	1	1	Co-purification
CYS3	YAL012W	Cystathionine gamma-lyase	physical	1	1	1	Co-purification
MDH3	YDL078C	Peroxisomal malate dehydrogenase	physical	1	1	1	Co-purification
CDH1	YGL003C	Activator of anaphase-promoting complex/cyclosome (APC/C)	physical	1	1	1	Co-purification
EXO70	YJL085W	Subunit of the exocyst complex	genetic	1	1	1	Negative Genetic
PEX15	YOL044W	Tail-anchored type II integral peroxisomal membrane protein	physical	1	1	1	Co-purification
IGO1	YNL157W	Protein required for initiation of G0 program	physical	1	1	1	Affinity Capture-MS
ROD1	YOR018W	Alpha-arrestin involved in ubiquitin-dependent endocytosis	physical	1	1	1	Co-purification
QCR7	YDR529C	Subunit 7 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Co-purification
NTA1	YJR062C	Amidase	physical	1	1	1	Co-purification
CDC7	YDL017W	S/T kinase and catalytic subunit of DDK (Dbf4-dependent kinase)	physical	1	1	1	Co-purification
BNA5	YLR231C	Kynureninase	physical	1	1	1	Co-purification
RNR3	YIL066C	Minor isoform of large subunit of ribonucleotide-diphosphate reductase	physical	1	1	1	Co-purification
EFM1	YHL039W	Lysine methyltransferase	physical	1	1	1	Co-purification
NUP133	YKR082W	Subunit of Nup84p subcomplex of nuclear pore complex (NPC)	physical	1	1	1	Co-purification
PKH1	YDR490C	Serine/threonine protein kinase	physical	1	1	1	Co-purification
SNF4	YGL115W	Activating gamma subunit of the AMP-activated Snf1p kinase complex	physical	1	1	1	Co-purification
RNH203	YLR154C	Ribonuclease H2 subunit	physical	1	1	1	Co-purification
ARO9	YHR137W	Aromatic aminotransferase II	physical	1	1	1	Co-purification
REX2	YLR059C	3'-5' RNA exonuclease	physical	1	1	1	Co-purification
MMS22	YLR320W	Subunit of E3 ubiquitin ligase complex involved in replication repair	physical	1	1	1	Affinity Capture-MS
GDH2	YDL215C	NAD(+)-dependent glutamate dehydrogenase	physical	1	1	1	Co-purification
DHR2	YKL078W	Predominantly nucleolar DEAH-box ATP-dependent RNA helicase	physical	1	1	1	Co-purification
RPL5	YPL131W	Ribosomal 60S subunit protein L5	physical	1	1	1	Co-purification
APM4	YOL062C	Cargo-binding mu subunit of AP-2	physical	1	1	1	Co-purification
APL4	YPR029C	Gamma-adaptin	physical	1	1	1	Co-purification
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	physical	1	1	1	Co-purification
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	physical	1	1	1	Affinity Capture-MS
SIR1	YKR101W	Protein involved in silencing at mating-type loci HML and HMR	physical	1	1	1	Co-purification
SRV2	YNL138W	CAP (cyclase-associated protein)	physical	1	1	1	Co-purification
ATP5	YDR298C	Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Co-purification
ATP7	YKL016C	Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Co-purification
NBP2	YDR162C	Protein involved in the HOG (high osmolarity glycerol) pathway	physical	1	1	1	Co-purification
ADH5	YBR145W	Alcohol dehydrogenase isoenzyme V	physical	1	1	1	Co-purification
CTK3	YML112W	Gamma subunit of C-terminal domain kinase I	physical	1	1	1	Co-purification
SNZ2	YNL333W	Protein involved in thiamine and pyridoxine biosynthesis	physical	1	1	1	Co-purification
PRS1	YKL181W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Co-purification
DDI1	YER143W	Aspartic-type endopeptidase	physical	1	1	1	Co-purification
BUD27	YFL023W	Unconventional prefoldin protein involved in translation initiation	genetic	1	1	1	Synthetic Growth Defect
NMA1	YLR328W	Nicotinic acid mononucleotide adenylyltransferase	physical	1	1	1	Co-purification
GLG2	YJL137C	Glycogenin glucosyltransferase	physical	1	1	1	Co-purification
SNF8	YPL002C	Component of the ESCRT-II complex	physical	1	1	1	Co-purification
ADE2	YOR128C	Phosphoribosylaminoimidazole carboxylase	genetic	1	1	1	Synthetic Rescue
ADE8	YDR408C	Phosphoribosyl-glycinamide transformylase	physical	1	1	1	Co-purification
ALR1	YOL130W	Plasma membrane Mg(2+) transporter	physical	1	1	1	Co-purification
ATG1	YGL180W	Protein serine/threonine kinase	physical	1	1	1	Co-purification
ARG3	YJL088W	Ornithine carbamoyltransferase	physical	1	1	1	Co-purification
CIN4	YMR138W	GTP-binding protein involved in beta-tubulin (Tub2p) folding	physical	1	1	1	Co-purification
CIT2	YCR005C	Citrate synthase, peroxisomal isozyme involved in glyoxylate cycle	physical	1	1	1	Co-purification
CSM1	YCR086W	Nucleolar protein that mediates homolog segregation during meiosis I	physical	1	1	1	Co-purification
EBS1	YDR206W	Protein involved in translation inhibition and nonsense-mediated decay	physical	1	1	1	Co-purification
GDH1	YOR375C	NADP(+)-dependent glutamate dehydrogenase	physical	1	1	1	Co-purification
GEP4	YHR100C	Mitochondrial phosphatidylglycerophosphatase (PGP phosphatase)	physical	1	1	1	Co-purification
GRX5	YPL059W	Glutathione-dependent oxidoreductase	physical	1	1	1	Co-purification
GZF3	YJL110C	GATA zinc finger protein	physical	1	1	1	Co-purification
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	physical	1	1	1	Co-purification
HST3	YOR025W	Sirtuin, histone H3 deacetylase	physical	1	1	1	Co-purification
HCS1	YKL017C	Hexameric DNA polymerase alpha-associated DNA helicase A	physical	1	1	1	Co-purification
IRE1	YHR079C	Serine-threonine kinase and endoribonuclease	genetic	1	1	1	Phenotypic Suppression
KAR4	YCL055W	Transcription factor required for response to pheromones	physical	1	1	1	Co-purification
BIT61	YJL058C	Subunit of TORC2 membrane-associated complex	physical	1	1	1	Reconstituted Complex
GCN4	YEL009C	bZIP transcriptional activator of amino acid biosynthetic genes	genetic	1	1	1	Dosage Rescue
MOB2	YFL034C-B	Activator of Cbk1p kinase	physical	1	1	1	Co-purification
MRP8	YKL142W	Protein of unknown function	physical	1	1	1	Co-purification
ASM4	YDL088C	FG-nucleoporin component of central core of nuclear pore complex (NPC)	physical	1	1	1	Co-purification
NIF3	YGL221C	Protein of unknown function	physical	1	1	1	Co-purification
NUP157	YER105C	Subunit of the inner ring of the nuclear pore complex (NPC)	physical	1	1	1	Co-purification
HSP10	YOR020C	Mitochondrial matrix co-chaperonin	physical	1	1	1	Co-purification
MMR1	YLR190W	Phosphorylated protein of the mitochondrial outer membrane	physical	1	1	1	Co-purification
PCL9	YDL179W	Cyclin	physical	1	1	1	Co-purification
PKC1	YBL105C	Protein serine/threonine kinase	physical	1	1	1	Co-purification
PKC1	YBL105C	Protein serine/threonine kinase	genetic	1	1	1	Negative Genetic
PPG1	YNR032W	Serine protein phosphatase involved in formation of FAR complex	physical	1	1	1	Co-purification
CSM3	YMR048W	Replication fork associated factor	physical	1	1	1	Co-purification
MRX21	YPR011C	Mitochondrial transporter	physical	1	1	1	Co-purification
PBY1	YBR094W	Putative tubulin tyrosine ligase associated with P-bodies	physical	1	1	1	Co-purification
RRN6	YBL014C	Component of the core factor (CF) rDNA transcription factor complex	physical	1	1	1	Co-purification
ATG34	YOL083W	Receptor protein involved in selective autophagy during starvation	physical	1	1	1	Co-purification
RMD1	YDL001W	Cytoplasmic protein required for sporulation	physical	1	1	1	Co-purification
PET191	YJR034W	Protein required for assembly of cytochrome c oxidase	physical	1	1	1	Co-purification
BAS1	YKR099W	Myb-related transcription factor	physical	1	1	1	Co-purification
COQ5	YML110C	2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase	physical	1	1	1	Co-purification
SKI8	YGL213C	Ski complex component and WD-repeat protein	physical	1	1	1	Co-purification
FOB1	YDR110W	Nucleolar protein that binds the rDNA replication fork barrier site	physical	1	1	1	Co-purification
MRX16	YDR132C	Protein that associates with the large mitoribosomal subunit	physical	1	1	1	Co-purification
NBA1	YOL070C	Protein involved in axial bud site selection	physical	1	1	1	Co-purification
AIM18	YHR198C	Protein of unknown function	physical	1	1	1	Co-purification
DAS2	YDR020C	Putative protein of unknown function	physical	1	1	1	Co-purification
SPC72	YAL047C	Gamma-tubulin small complex (gamma-TuSC) receptor	physical	1	1	1	Affinity Capture-MS
BMT2	YBR141C	Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase	physical	1	1	1	Co-purification
BNA6	YFR047C	Quinolinate phosphoribosyl transferase	physical	1	1	1	Co-purification
DLS1	YJL065C	Subunit of ISW2/yCHRAC chromatin accessibility complex	physical	1	1	1	Co-purification
DET1	YDR051C	Acid phosphatase	physical	1	1	1	Co-purification
AIM7	YDR063W	Protein that interacts with Arp2/3 complex	physical	1	1	1	Co-purification
NMA2	YGR010W	Nicotinic acid mononucleotide adenylyltransferase	physical	1	1	1	Co-purification
LAM6	YLR072W	Sterol transporter that transfers sterols between membranes	physical	1	1	1	Co-purification
ART5	YGR068C	Protein proposed to regulate endocytosis of plasma membrane proteins	physical	1	1	1	Co-purification
SAM35	YHR083W	Component of the sorting and assembly machinery (SAM) complex	physical	1	1	1	Co-purification
FIS1	YIL065C	Protein involved in mitochondrial fission and peroxisome abundance	physical	1	1	1	Co-purification
SER33	YIL074C	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	physical	1	1	1	Co-purification
MDE1	YJR024C	5'-methylthioribulose-1-phosphate dehydratase	physical	1	1	1	Co-purification
GPN2	YOR262W	Putative GTPase with a specific role in RNA pol II and polIII biogenes	physical	1	1	1	Co-purification
ASK10	YGR097W	Regulator of the Fps1p glycerol channel	physical	1	1	1	Co-purification
PRR1	YKL116C	Serine/threonine protein kinase	physical	1	1	1	Co-purification
RIB4	YOL143C	Lumazine synthase (DMRL synthase)	physical	1	1	1	Co-purification
MHT1	YLL062C	S-methylmethionine-homocysteine methyltransferase	physical	1	1	1	Co-purification
AVO2	YMR068W	Component of a complex containing the Tor2p kinase and other proteins	physical	1	1	1	Co-purification
MGL2	YMR210W	Monoacylglycerol and triacylglycerol lipase	physical	1	1	1	Co-purification
ELP6	YMR312W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	physical	1	1	1	Co-purification
MET14	YKL001C	Adenylylsulfate kinase	physical	1	1	1	Co-purification
MDY2	YOL111C	Protein involved in inserting tail-anchored proteins into ER membranes	physical	1	1	1	Co-purification
OCA2	YNL056W	Protein of unknown function	physical	1	1	1	Co-purification
APC11	YDL008W	Catalytic core subunit, Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Co-purification
CLB1	YGR108W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Co-purification
COG1	YGL223C	Essential component of the conserved oligomeric Golgi complex	physical	1	1	1	Co-purification
ELP3	YPL086C	Subunit of Elongator complex	physical	1	1	1	Co-purification
ELP4	YPL101W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	physical	1	1	1	Co-purification
IKI1	YHR187W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	physical	1	1	1	Co-purification
RPL4A	YBR031W	Ribosomal 60S subunit protein L4A	physical	1	1	1	Co-purification
RNA15	YGL044C	Component of the cleavage and polyadenylation factor I (CF I)	physical	1	1	1	Co-purification
GRC3	YLL035W	Polynucleotide kinase present on rDNA	physical	1	1	1	Co-purification
BMT5	YIL096C	Methyltransferase required for m3U2634 methylation of the 25S rRNA	physical	1	1	1	Co-purification
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS4A	YJR145C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS5	YJR123W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
NFI1	YOR156C	SUMO E3 ligase	physical	1	1	1	Co-purification
CDC21	YOR074C	Thymidylate synthase	physical	1	1	1	Co-purification
CST6	YIL036W	Basic leucine zipper (bZIP) transcription factor from ATF/CREB family	physical	1	1	1	Co-purification
RPL23B	YER117W	Ribosomal 60S subunit protein L23B	physical	1	1	1	Co-purification
RPL9A	YGL147C	Ribosomal 60S subunit protein L9A	physical	1	1	1	Co-purification
RPL9B	YNL067W	Ribosomal 60S subunit protein L9B	physical	1	1	1	Co-purification
RPS24A	YER074W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS24B	YIL069C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
SFH1	YLR321C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Co-purification
SPT4	YGR063C	Spt4p/5p (DSIF) transcription elongation factor complex subunit	physical	1	1	1	Co-purification
AMD1	YML035C	AMP deaminase	physical	1	1	1	Co-purification
BRE5	YNR051C	Ubiquitin protease cofactor	physical	1	1	1	Affinity Capture-MS
ARP6	YLR085C	Actin-related protein that binds nucleosomes	physical	1	1	1	Co-purification
MSN2	YMR037C	Stress-responsive transcriptional activator	physical	1	1	1	Co-purification
MCM1	YMR043W	Transcription factor	genetic	1	1	1	Negative Genetic
RTG3	YBL103C	bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways	physical	1	1	1	Co-purification
SCL1	YGL011C	Alpha 1 subunit of the 20S proteasome	physical	1	1	1	Co-purification
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	physical	1	1	1	Co-purification
RPS8A	YBL072C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS8B	YER102W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPL20B	YOR312C	Ribosomal 60S subunit protein L20B	physical	1	1	1	Co-purification
RPS11A	YDR025W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS17A	YML024W	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	1	1	1	Co-purification
RPS17B	YDR447C	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	1	1	1	Co-purification
RPS1B	YML063W	Ribosomal protein of the small (40S) subunit	physical	1	1	1	Co-purification
RPS7A	YOR096W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS11B	YBR048W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS9B	YBR189W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPL22A	YLR061W	Ribosomal 60S subunit protein L22A	physical	1	1	1	Co-purification
RPS22A	YJL190C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
BFR1	YOR198C	Component of mRNP complexes associated with polyribosomes	physical	1	1	1	Affinity Capture-RNA
MOT2	YER068W	Ubiquitin-protein ligase subunit of the CCR4-NOT complex	physical	1	1	1	Co-purification
CTF8	YHR191C	Subunit of a complex with Ctf18p	physical	1	1	1	Co-purification
CTK2	YJL006C	Beta subunit of C-terminal domain kinase I (CTDK-I)	physical	1	1	1	Co-purification
DCD1	YHR144C	Deoxycytidine monophosphate (dCMP) deaminase	physical	1	1	1	Co-purification
ELO2	YCR034W	Fatty acid elongase, involved in sphingolipid biosynthesis	genetic	1	1	1	Negative Genetic
FRQ1	YDR373W	N-myristoylated calcium-binding protein	physical	1	1	1	Co-purification
GCD10	YNL062C	Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p	physical	1	1	1	Co-purification
HSP150	YJL159W	O-mannosylated heat shock protein	physical	1	1	1	Co-purification
HXK2	YGL253W	Hexokinase isoenzyme 2	physical	1	1	1	Co-purification
IOC2	YLR095C	Subunit of the Isw1b complex	physical	1	1	1	Co-purification
MCM3	YEL032W	Protein involved in DNA replication	physical	1	1	1	Co-purification
MEX67	YPL169C	Poly(A)RNA binding protein involved in nuclear mRNA export	physical	1	1	1	Co-purification
MPS1	YDL028C	Dual-specificity kinase	physical	1	1	1	Co-purification
MYO3	YKL129C	One of two type I myosins	physical	1	1	1	Co-purification
MYO5	YMR109W	One of two type I myosin motors	physical	1	1	1	Co-purification
NIS1	YNL078W	Protein involved in axial bud site selection	physical	1	1	1	Co-purification
ORC3	YLL004W	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Co-purification
OST2	YOR103C	Epsilon subunit of the oligosaccharyltransferase complex	physical	1	1	1	Co-purification
PAN1	YIR006C	Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p	physical	1	1	1	Co-purification
PUP1	YOR157C	Beta 2 subunit of the 20S proteasome	physical	1	1	1	Co-purification
RAD5	YLR032W	DNA helicase/Ubiquitin ligase	physical	1	1	1	Co-purification
RPA14	YDR156W	RNA polymerase I subunit A14	physical	1	1	1	Co-purification
RRN3	YKL125W	Protein required for transcription of rDNA by RNA polymerase I	physical	1	1	1	Co-purification
RTG2	YGL252C	Sensor of mitochondrial dysfunction	physical	1	1	1	Co-purification
SBH1	YER087C-B	Beta subunit of Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p)	physical	1	1	1	Co-purification
SEC20	YDR498C	Membrane glycoprotein v-SNARE	physical	1	1	1	Co-purification
BET1	YIL004C	Type II membrane protein required for vesicular transport	physical	1	1	1	Co-purification
SEC22	YLR268W	R-SNARE protein	physical	1	1	1	Co-purification
RRD1	YIL153W	Peptidyl-prolyl cis/trans-isomerase	physical	1	1	1	Co-purification
SKN7	YHR206W	Nuclear response regulator and transcription factor	physical	1	1	1	Co-purification
SNC1	YAL030W	Vesicle membrane receptor protein (v-SNARE)	physical	1	1	1	Co-purification
SRO7	YPR032W	Effector of Rab GTPase Sec4p	physical	1	1	1	Co-purification
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	genetic	1	1	1	Dosage Lethality
PEP8	YJL053W	Vacuolar protein component of the retromer	physical	1	1	1	Co-purification
CCZ1	YBR131W	Subunit of a heterodimeric guanine nucleotide exchange factor (GEF)	genetic	1	1	1	Negative Genetic
DPH2	YKL191W	Protein required for synthesis of diphthamide	physical	1	1	1	Co-purification
DPH1	YIL103W	Protein required for synthesis of diphthamide	physical	1	1	1	Co-purification
CIN1	YOR349W	Tubulin folding factor D involved in beta-tubulin (Tub2p) folding	physical	1	1	1	Co-purification
PHO2	YDL106C	Homeobox transcription factor	physical	1	1	1	Co-purification
GOS1	YHL031C	v-SNARE protein involved in Golgi transport	physical	1	1	1	Co-purification
SNX4	YJL036W	Sorting nexin	physical	1	1	1	Co-purification
SSA2	YLL024C	HSP70 family ATP-binding protein	physical	1	1	1	Co-purification
MRPS9	YBR146W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
RSM10	YDR041W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
RSM19	YNR037C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
HSF1	YGL073W	Trimeric heat shock transcription factor	physical	1	1	1	Affinity Capture-Western
OST5	YGL226C-A	Zeta subunit of the oligosaccharyltransferase complex of the ER lumen	physical	1	1	1	Co-purification
MBF1	YOR298C-A	Transcriptional coactivator	physical	1	1	1	Co-purification
MOB1	YIL106W	Component of the mitotic exit network	physical	1	1	1	Co-purification
PCL1	YNL289W	Cyclin, interacts with cyclin-dependent kinase Pho85p	physical	1	1	1	Co-purification
SEC24	YIL109C	Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat	physical	1	1	1	Co-purification
SRM1	YGL097W	Nucleotide exchange factor for Gsp1p	physical	1	1	1	Co-purification
CSG2	YBR036C	Endoplasmic reticulum membrane protein	genetic	1	1	1	Negative Genetic
PDR17	YNL264C	Phosphatidylinositol transfer protein (PITP)	physical	1	1	1	Co-purification
SNL1	YIL016W	Ribosome-associated protein	physical	1	1	1	Affinity Capture-Western
CCP1	YKR066C	Mitochondrial cytochrome-c peroxidase	physical	1	1	1	Co-purification
GYP1	YOR070C	Cis-golgi GTPase-activating protein (GAP) for yeast Rabs	physical	1	1	1	Co-purification
SLA2	YNL243W	Adaptor protein that links actin to clathrin and endocytosis	physical	1	1	1	Co-purification
SML1	YML058W	Ribonucleotide reductase inhibitor	physical	1	1	1	Co-purification
POL3	YDL102W	Catalytic subunit of DNA polymerase delta	physical	1	1	1	Co-purification
SCO1	YBR037C	Copper-binding protein of mitochondrial inner membrane	physical	1	1	1	Co-purification
CCS1	YMR038C	Copper chaperone for superoxide dismutase Sod1p	physical	1	1	1	Co-purification
POL31	YJR006W	Subunit of DNA polymerase delta (polymerase III)	physical	1	1	1	Co-purification
SCO2	YBR024W	Protein anchored to mitochondrial inner membrane	physical	1	1	1	Co-purification
MUD2	YKL074C	Protein involved in early pre-mRNA splicing	physical	1	1	1	Co-purification
NUP100	YKL068W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Co-purification
RBL2	YOR265W	Protein involved in microtubule morphogenesis	physical	1	1	1	Co-purification
SPC34	YKR037C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Co-purification
CAF16	YFL028C	Part of evolutionarily-conserved CCR4-NOT regulatory complex	physical	1	1	1	Co-purification
MCM7	YBR202W	Component of the Mcm2-7 hexameric helicase complex	physical	1	1	1	Co-purification
GSY2	YLR258W	Glycogen synthase	physical	1	1	1	Co-purification
GTS1	YGL181W	Protein involved in Arf3p regulation and in transcription regulation	physical	1	1	1	Co-purification
HCH1	YNL281W	Heat shock protein regulator	physical	1	1	1	Co-purification
INP53	YOR109W	Polyphosphatidylinositol phosphatase	physical	1	1	1	Co-purification
GAD1	YMR250W	Glutamate decarboxylase	physical	1	1	1	Co-purification
DBP1	YPL119C	ATP-dependent RNA helicase of the DEAD-box protein family	physical	1	1	1	Co-purification
DCN1	YLR128W	Scaffold-type E3 ligase	physical	1	1	1	Co-purification
BCH1	YMR237W	Member of the ChAPs family (Chs5p-Arf1p-binding proteins)	physical	1	1	1	Co-purification
DSE1	YER124C	Daughter cell-specific protein	physical	1	1	1	Co-purification
ATC1	YDR184C	Nuclear protein	physical	1	1	1	Co-purification
HMT1	YBR034C	Nuclear SAM-dependent mono- and asymmetric methyltransferase	physical	1	1	1	Co-purification
DPH6	YLR143W	Diphthamide synthetase	physical	1	1	1	Co-purification
CDC19	YAL038W	Pyruvate kinase	physical	1	1	1	Affinity Capture-MS
MID2	YLR332W	O-glycosylated plasma membrane protein	physical	1	1	1	Two-hybrid
MON1	YGL124C	Subunit of a heterodimeric guanine nucleotide exchange factor (GEF)	genetic	1	1	1	Negative Genetic
GIC2	YDR309C	Rho-family GTPase interacting protein and Cdc42p effector	physical	1	1	1	Co-purification
PEX11	YOL147C	Peroxisomal protein required for medium-chain fatty acid oxidation	physical	1	1	1	Co-purification
FIR1	YER032W	Protein involved in 3' mRNA processing	physical	1	1	1	Co-purification
RGD2	YFL047W	GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p	physical	1	1	1	Co-purification
GYL1	YMR192W	Putative GTPase activating protein (GAP) with a role in exocytosis	physical	1	1	1	Affinity Capture-MS
GFD2	YCL036W	Protein of unknown function	physical	1	1	1	Co-purification
HRI1	YLR301W	Protein of unknown function that interacts with Sec72p and Hrr25p	physical	1	1	1	Co-purification
LSB5	YCL034W	Protein involved in membrane-trafficking events at plasma membrane	physical	1	1	1	Co-purification
ARK1	YNL020C	Ser/Thr protein kinase	physical	1	1	1	Co-purification
PRP22	YER013W	DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase	physical	1	1	1	Co-purification
MKK1	YOR231W	MAPKK involved in the protein kinase C signaling pathway	physical	1	1	1	Co-purification
SPC42	YKL042W	Central plaque component of spindle pole body (SPB)	physical	1	1	1	Co-purification
MRI1	YPR118W	5'-methylthioribose-1-phosphate isomerase	physical	1	1	1	Co-purification
ORC5	YNL261W	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Co-purification
NUP42	YDR192C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Co-purification
AZF1	YOR113W	Zinc-finger transcription factor	physical	1	1	1	Co-purification
AZF1	YOR113W	Zinc-finger transcription factor	genetic	1	1	1	Negative Genetic
MIX17	YMR002W	Mitochondrial intermembrane space protein	physical	1	1	1	Co-purification
BUD17	YNR027W	Putative pyridoxal kinase	physical	1	1	1	Co-purification
SAM2	YDR502C	S-adenosylmethionine synthetase	physical	1	1	1	Co-purification
RPL1A	YPL220W	Ribosomal 60S subunit protein L1A	physical	1	1	1	Co-purification
RPL1B	YGL135W	Ribosomal 60S subunit protein L1B	physical	1	1	1	Co-purification
PBP1	YGR178C	Component of glucose deprivation induced stress granules	physical	1	1	1	Co-purification
ATP1	YBL099W	Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase	genetic	1	1	1	Dosage Rescue
CLA4	YNL298W	Cdc42p-activated signal transducing kinase	physical	1	1	1	Co-purification
PFY1	YOR122C	Profilin	physical	1	1	1	Co-purification
RSR1	YGR152C	Ras-type GTPase	physical	1	1	1	Co-purification
SRO77	YBL106C	Protein with roles in exocytosis and cation homeostasis	physical	1	1	1	Co-purification
GTT1	YIR038C	ER associated glutathione S-transferase	physical	1	1	1	Co-purification
RPL25	YOL127W	Ribosomal 60S subunit protein L25	physical	1	1	1	Co-purification
RPL31A	YDL075W	Ribosomal 60S subunit protein L31A	physical	1	1	1	Co-purification
RRN5	YLR141W	Protein involved in transcription of rDNA by RNA polymerase I	physical	1	1	1	Co-purification
PRI1	YIR008C	Subunit of DNA primase	physical	1	1	1	Co-purification
HO	YDL227C	Site-specific endonuclease	physical	1	1	1	Co-purification
CPR7	YJR032W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Co-purification
GAT1	YFL021W	Transcriptional activator of nitrogen catabolite repression genes	physical	1	1	1	Co-purification
RDI1	YDL135C	Rho GDP dissociation inhibitor	physical	1	1	1	Co-purification
ERT1	YBR239C	Transcriptional regulator	physical	1	1	1	Co-purification
RER1	YCL001W	Protein involved in retention of membrane proteins	genetic	1	1	1	Dosage Rescue
MFA2	YNL145W	Mating pheromone a-factor	physical	1	1	1	Co-purification
OXA1	YER154W	Mitochondrial inner membrane insertase	physical	1	1	1	Co-purification
MSL5	YLR116W	Component of commitment complex	physical	1	1	1	Co-purification
CAP2	YIL034C	Beta subunit of the capping protein heterodimer (Cap1p and Cap2p)	physical	1	1	1	Co-purification
RPS2	YGL123W	Protein component of the small (40S) subunit	physical	1	1	1	Co-purification
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
HAC1	YFL031W	Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog)	physical	1	1	1	Co-purification
HAC1	YFL031W	Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog)	genetic	1	1	1	Phenotypic Suppression
RIM20	YOR275C	Protein involved in proteolytic activation of Rim101p	physical	1	1	1	Co-purification
NUP188	YML103C	Subunit of the inner ring of the nuclear pore complex (NPC)	physical	1	1	1	Co-purification
EIS1	YMR031C	Component of the eisosome required for proper eisosome assembly	physical	1	1	1	Affinity Capture-MS
KAP120	YPL125W	Karyopherin responsible for the nuclear import of Rpf1p	physical	1	1	1	Co-purification
PAN3	YKL025C	Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex	physical	1	1	1	Co-purification
PHB1	YGR132C	Subunit of the prohibitin complex (Phb1p-Phb2p)	physical	1	1	1	Co-purification
ASN1	YPR145W	Asparagine synthetase	physical	1	1	1	Co-purification
CIN2	YPL241C	GTPase-activating protein (GAP) for Cin4p	physical	1	1	1	Co-purification
BET4	YJL031C	Alpha subunit of Type II geranylgeranyltransferase	physical	1	1	1	Co-purification
RPL11A	YPR102C	Ribosomal 60S subunit protein L11A	physical	1	1	1	Co-purification
RPL11B	YGR085C	Ribosomal 60S subunit protein L11B	physical	1	1	1	Co-purification
PRS4	YBL068W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP	physical	1	1	1	Co-purification
DOM34	YNL001W	Protein that facilitates ribosomal subunit dissociation	physical	1	1	1	Co-purification
DBP6	YNR038W	Essential protein involved in ribosome biogenesis	physical	1	1	1	Co-purification
DYS1	YHR068W	Deoxyhypusine synthase	physical	1	1	1	Co-purification
ACM1	YPL267W	Pseudosubstrate inhibitor of the APC/C	physical	1	1	1	Co-purification
CLB3	YDL155W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Co-purification
SGF11	YPL047W	Integral subunit of SAGA histone acetyltransferase complex	genetic	1	1	1	Negative Genetic
PXL1	YKR090W	Protein that localizes to sites of polarized growth	physical	1	1	1	Co-purification
RNR4	YGR180C	Ribonucleotide-diphosphate reductase (RNR) small subunit	physical	1	1	1	Co-purification
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	physical	1	1	1	Co-purification
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	physical	1	1	1	Affinity Capture-MS
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	genetic	1	1	1	Dosage Lethality
TDA2	YER071C	Subunit of a complex that associates with actin filaments	physical	1	1	1	Affinity Capture-MS
TGL5	YOR081C	Bifunctional triacylglycerol lipase and LPA acyltransferase	physical	1	1	1	Affinity Capture-MS
YTA6	YPL074W	Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family	physical	1	1	1	Affinity Capture-MS
VPS52	YDR484W	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-MS
TYW1	YPL207W	Iron-sulfur protein required for synthesis of wybutosine modified tRNA	physical	1	1	1	Affinity Capture-MS
UTP7	YER082C	Nucleolar protein	physical	1	1	1	Affinity Capture-MS
UBP3	YER151C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-MS
UBI4	YLL039C	Ubiquitin	physical	1	1	1	Affinity Capture-MS
ULP2	YIL031W	Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins	physical	1	1	1	PCA
YCF1	YDR135C	Vacuolar glutathione S-conjugate transporter	physical	1	1	1	PCA
UBP13	YBL067C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-MS
TOD6	YBL054W	PAC motif binding protein involved in rRNA and ribosome biogenesis	physical	1	1	1	Co-purification
YBL055C	YBL055C	3'-->5' exonuclease and endonuclease with a possible role in apoptosis	physical	1	1	1	Co-purification
YPK3	YBR028C	AGC kinase	physical	1	1	1	Co-purification
ZTA1	YBR046C	NADPH-dependent quinone reductase	physical	1	1	1	Co-purification
UBP14	YBR058C	Ubiquitin-specific protease	physical	1	1	1	Co-purification
TRM7	YBR061C	2'-O-ribose methyltransferase	physical	1	1	1	Co-purification
YBR071W	YBR071W	Protein of unknown function found in the cytoplasm and bud neck	physical	1	1	1	Co-purification
YSA1	YBR111C	Nudix hydrolase family member with ADP-ribose pyrophosphatase activity	physical	1	1	1	Co-purification
TEF2	YBR118W	Translational elongation factor EF-1 alpha	physical	1	1	1	Co-purification
VMA2	YBR127C	Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase	physical	1	1	1	Co-purification
SUP45	YBR143C	Polypeptide release factor (eRF1) in translation termination	physical	1	1	1	Co-purification
UMP1	YBR173C	Chaperone required for correct maturation of the 20S proteasome	physical	1	1	1	Co-purification
YBR238C	YBR238C	Mitochondrial membrane protein	physical	1	1	1	Co-purification
YBR242W	YBR242W	5'-deoxynucleotidase involved in deoxyribonucleoside monophosphate deg	physical	1	1	1	Co-purification
TAE1	YBR261C	AdoMet-dependent proline methyltransferase	physical	1	1	1	Co-purification
YPT10	YBR264C	Rab family GTP-binding protein	physical	1	1	1	Co-purification
STP22	YCL008C	Component of the ESCRT-I complex	physical	1	1	1	Co-purification
YCP4	YCR004C	Protein of unknown function	physical	1	1	1	Co-purification
YCR051W	YCR051W	Putative protein of unknown function	physical	1	1	1	Co-purification
THR4	YCR053W	Threonine synthase	physical	1	1	1	Co-purification
YIH1	YCR059C	Negative regulator of eIF2 kinase Gcn2p	physical	1	1	1	Co-purification
TAH1	YCR060W	Component of conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1)	physical	1	1	1	Co-purification
YCR090C	YCR090C	Putative protein of unknown function	physical	1	1	1	Co-purification
STP4	YDL048C	Protein containing a Kruppel-type zinc-finger domain	physical	1	1	1	Co-purification
TSR1	YDL060W	Protein required for processing of 20S pre-rRNA in the cytoplasm	physical	1	1	1	Co-purification
YDL086W	YDL086W	Putative carboxymethylenebutenolidase	physical	1	1	1	Co-purification
YDL124W	YDL124W	NADPH-dependent alpha-keto amide reductase	physical	1	1	1	Co-purification
YDL129W	YDL129W	Protein of unknown function	physical	1	1	1	Co-purification
YDL144C	YDL144C	Protein of unknown function	physical	1	1	1	Co-purification
STE7	YDL159W	Signal transducing MAP kinase kinase	physical	1	1	1	Co-purification
UFD2	YDL190C	Ubiquitin (Ub) chain assembly factor (E4)	physical	1	1	1	Co-purification
WHI4	YDL224C	Putative RNA binding protein	physical	1	1	1	Co-purification
YRB1	YDR002W	Ran GTPase binding protein	physical	1	1	1	Co-purification
TRP1	YDR007W	Phosphoribosylanthranilate isomerase	physical	1	1	1	Co-purification
TPI1	YDR050C	Triose phosphate isomerase, abundant glycolytic enzyme	physical	1	1	1	Co-purification
UBC13	YDR092W	E2 ubiquitin-conjugating enzyme	physical	1	1	1	Co-purification
STE5	YDR103W	Pheromone-responsive MAPK scaffold protein	physical	1	1	1	Co-purification
STB3	YDR169C	Ribosomal RNA processing element (RRPE)-binding protein	physical	1	1	1	Co-purification
YDR210C-C	YDR210C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Co-purification
TCP1	YDR212W	Alpha subunit of chaperonin-containing T-complex	physical	1	1	1	Co-purification
YDR222W	YDR222W	Protein of unknown function	physical	1	1	1	Co-purification
VHS1	YDR247W	Cytoplasmic serine/threonine protein kinase	physical	1	1	1	Co-purification
SSD1	YDR293C	Translational repressor	physical	1	1	1	Co-purification
UBX5	YDR330W	UBX domain-containing protein that interacts with Cdc48p	physical	1	1	1	Co-purification
YDR341C	YDR341C	Arginyl-tRNA synthetase	physical	1	1	1	Co-purification
SVF1	YDR346C	Protein with a potential role in cell survival pathways	physical	1	1	1	Co-purification
TRR1	YDR353W	Cytoplasmic thioredoxin reductase	physical	1	1	1	Co-purification
TRP4	YDR354W	Anthranilate phosphoribosyl transferase	physical	1	1	1	Co-purification
YDR365W-A	YDR365W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Co-purification
YPR1	YDR368W	NADPH-dependent aldo-keto reductase	physical	1	1	1	Co-purification
VPS74	YDR372C	Golgi PI4K effector, PtdIns4P sensor, and retention receptor	physical	1	1	1	Co-purification
URH1	YDR400W	Uridine nucleosidase (uridine-cytidine N-ribohydrolase)	physical	1	1	1	Co-purification
URC2	YDR520C	Putative Zn(II)2Cys6 motif containing transcription factor	physical	1	1	1	Co-purification
UTR4	YEL038W	Protein with sequence similarity to acireductone synthases	physical	1	1	1	Co-purification
TMA20	YER007C-A	Protein of unknown function that associates with ribosomes	physical	1	1	1	Co-purification
TRP2	YER090W	Anthranilate synthase	physical	1	1	1	Co-purification
YER134C	YER134C	Magnesium-dependent acid phosphatase	physical	1	1	1	Co-purification
YER137C-A	YER137C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Co-purification
YER152C	YER152C	Protein with 2-aminoadipate transaminase activity	physical	1	1	1	Co-purification
TUB2	YFL037W	Beta-tubulin	physical	1	1	1	Co-purification
YFR006W	YFR006W	Putative X-Pro aminopeptidase	physical	1	1	1	Co-purification
TRP5	YGL026C	Tryptophan synthase	physical	1	1	1	Co-purification
YGL039W	YGL039W	Aldehyde reductase	physical	1	1	1	Co-purification
YGL082W	YGL082W	Putative protein of unknown function	physical	1	1	1	Co-purification
YGK1	YGL101W	5'-deoxynucleotidase	physical	1	1	1	Co-purification
SUA5	YGL169W	Protein involved in threonylcarbamoyl adenosine biosynthesis	physical	1	1	1	Co-purification
XRN1	YGL173C	Evolutionarily-conserved 5'-3' exonuclease	physical	1	1	1	Co-purification
YGL185C	YGL185C	Putative protein with sequence similar to hydroxyacid dehydrogenases	physical	1	1	1	Co-purification
YGR017W	YGR017W	Putative protein of unknown function	physical	1	1	1	Co-purification
TWF1	YGR080W	Twinfilin	physical	1	1	1	Co-purification
VAS1	YGR094W	Mitochondrial and cytoplasmic valyl-tRNA synthetase	physical	1	1	1	Co-purification
YGR111W	YGR111W	Putative protein of unknown function	physical	1	1	1	Co-purification
YGR117C	YGR117C	Putative protein of unknown function	physical	1	1	1	Co-purification
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	physical	1	1	1	Co-purification
YCH1	YGR203W	Phosphatase with sequence similarity to Mih1p	physical	1	1	1	Co-purification
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Co-purification
YGR210C	YGR210C	Putative protein of unknown function	physical	1	1	1	Co-purification
ZPR1	YGR211W	Essential protein with two zinc fingers	physical	1	1	1	Co-purification
YHB1	YGR234W	Nitric oxide oxidoreductase	physical	1	1	1	Co-purification
STE20	YHL007C	Cdc42p-activated signal transducing kinase	physical	1	1	1	Co-purification
YSC84	YHR016C	Actin-binding protein	physical	1	1	1	Co-purification
TRM5	YHR070W	tRNA(m(1)G37)methyltransferase	physical	1	1	1	Co-purification
TRR2	YHR106W	Mitochondrial thioredoxin reductase	physical	1	1	1	Co-purification
UBA4	YHR111W	E1-like protein that activates Urm1p before urmylation	physical	1	1	1	Co-purification
YHR112C	YHR112C	Protein of unknown function	physical	1	1	1	Co-purification
YHR131C	YHR131C	Putative protein of unknown function	physical	1	1	1	Co-purification
THS1	YIL078W	Threonyl-tRNA synthetase	physical	1	1	1	Co-purification
YIL108W	YIL108W	Putative metalloendopeptidase	physical	1	1	1	Co-purification
SUC2	YIL162W	Invertase	physical	1	1	1	Co-purification
YVH1	YIR026C	Dual specificity protein phosphatase	physical	1	1	1	Co-purification
TAD2	YJL035C	Subunit of tRNA-specific adenosine-34 deaminase	physical	1	1	1	Co-purification
TDH1	YJL052W	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1	physical	1	1	1	Co-purification
YJL068C	YJL068C	Esterase that can function as an S-formylglutathione hydrolase	physical	1	1	1	Co-purification
URA2	YJL130C	Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase	physical	1	1	1	Co-purification
TIF2	YJL138C	Translation initiation factor eIF4A	physical	1	1	1	Co-purification
YAK1	YJL141C	Serine-threonine protein kinase	physical	1	1	1	Co-purification
SUI2	YJR007W	Alpha subunit of the translation initiation factor eIF2	physical	1	1	1	Co-purification
TDH2	YJR009C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2	physical	1	1	1	Co-purification
YJR026W	YJR026W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Co-purification
TAH11	YJR046W	DNA replication licensing factor	physical	1	1	1	Co-purification
YJR056C	YJR056C	Protein of unknown function	physical	1	1	1	Co-purification
YJR084W	YJR084W	Protein that forms a complex with Thp3p	physical	1	1	1	Co-purification
YJR096W	YJR096W	Xylose and arabinose reductase	physical	1	1	1	Co-purification
YUH1	YJR099W	Ubiquitin C-terminal hydrolase	physical	1	1	1	Co-purification
XPT1	YJR133W	Xanthine-guanine phosphoribosyl transferase	physical	1	1	1	Co-purification
TTI2	YJR136C	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Co-purification
URA6	YKL024C	Uridylate kinase	physical	1	1	1	Co-purification
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	physical	1	1	1	Co-purification
TMA19	YKL056C	Protein that associates with ribosomes	physical	1	1	1	Co-purification
YNK1	YKL067W	Nucleoside diphosphate kinase	physical	1	1	1	Co-purification
TEF4	YKL081W	Gamma subunit of translational elongation factor eEF1B	physical	1	1	1	Co-purification
YPK1	YKL126W	S/T protein kinase	physical	1	1	1	Co-purification
UBA1	YKL210W	Ubiquitin activating enzyme (E1)	physical	1	1	1	Co-purification
TRP3	YKL211C	Indole-3-glycerol-phosphate synthase	physical	1	1	1	Co-purification
URA1	YKL216W	Dihydroorotate dehydrogenase	physical	1	1	1	Co-purification
VPS1	YKR001C	Dynamin-like GTPase required for vacuolar sorting	physical	1	1	1	Co-purification
YKR045C	YKR045C	Putative protein of unknown function	physical	1	1	1	Co-purification
TIF1	YKR059W	Translation initiation factor eIF4A	physical	1	1	1	Co-purification
YLL032C	YLL032C	Protein of unknown function	physical	1	1	1	Co-purification
SSK1	YLR006C	Cytoplasmic phosphorelay intermediate osmosensor and regulator	physical	1	1	1	Co-purification
TRX1	YLR043C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Co-purification
TML25	YLR118C	Acyl-protein thioesterase responsible for depalmitoylation of Gpa1p	physical	1	1	1	Co-purification
YLR126C	YLR126C	Putative glutamine amidotransferase	physical	1	1	1	Co-purification
TIS11	YLR136C	mRNA-binding protein expressed during iron starvation	physical	1	1	1	Co-purification
STM1	YLR150W	Protein required for optimal translation under nutrient stress	physical	1	1	1	Co-purification
YLR157C-A	YLR157C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Co-purification
YLR179C	YLR179C	Protein of unknown function with similarity to Tfs1p	physical	1	1	1	Co-purification
TOS4	YLR183C	Putative transcription factor, contains Forkhead Associated domain	physical	1	1	1	Co-purification
YEF3	YLR249W	Translation elongation factor 3	physical	1	1	1	Co-purification
YLR287C	YLR287C	Putative protein of unknown function	physical	1	1	1	Co-purification
YLR345W	YLR345W	Similar to 6-phosphofructo-2-kinase enzymes	physical	1	1	1	Co-purification
TAL1	YLR354C	Transaldolase, enzyme in the non-oxidative pentose phosphate pathway	physical	1	1	1	Co-purification
STE11	YLR362W	Signal transducing MEK kinase	physical	1	1	1	Co-purification
VIP1	YLR410W	Bifunctional inositol pyrophosphate kinase and phosphatase	physical	1	1	1	Co-purification
YLR419W	YLR419W	Putative helicase with limited sequence similarity to human Rb protein	physical	1	1	1	Co-purification
URA4	YLR420W	Dihydroorotase	physical	1	1	1	Co-purification
TSR2	YLR435W	Protein with a potential role in pre-rRNA processing	physical	1	1	1	Co-purification
TRM12	YML005W	S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Co-purification
YAP1	YML007W	Basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Co-purification
TRM9	YML014W	tRNA methyltransferase	physical	1	1	1	Co-purification
YML040W	YML040W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Co-purification
YML079W	YML079W	Non-essential protein of unknown function	physical	1	1	1	Co-purification
YML082W	YML082W	Putative protein predicted to have carbon-sulfur lyase activity	physical	1	1	1	Co-purification
TUB1	YML085C	Alpha-tubulin	physical	1	1	1	Co-purification
YML096W	YML096W	Putative protein with similarity to asparagine synthetases	physical	1	1	1	Co-purification
VPS9	YML097C	Guanine nucleotide exchange factor (GEF) and ubiquitin receptor	physical	1	1	1	Co-purification
URA5	YML106W	Major orotate phosphoribosyltransferase (OPRTase) isozyme	physical	1	1	1	Co-purification
TUB3	YML124C	Alpha-tubulin	physical	1	1	1	Co-purification
YML131W	YML131W	Protein of unknown function	physical	1	1	1	Co-purification
YMR027W	YMR027W	A metal-dependent phosphatase, part of the DUF89 protein family	physical	1	1	1	Co-purification
YMR051C	YMR051C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Co-purification
UBX4	YMR067C	UBX domain-containing protein that interacts with Cdc48p	physical	1	1	1	Co-purification
YMR099C	YMR099C	Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase)	physical	1	1	1	Co-purification
YMR196W	YMR196W	Putative protein of unknown function	physical	1	1	1	Co-purification
YMR226C	YMR226C	NADP(+)-dependent serine dehydrogenase and carbonyl reductase	physical	1	1	1	Co-purification
TRI1	YMR233W	Non-essential sumoylated protein of unknown function	physical	1	1	1	Co-purification
TPS3	YMR261C	Regulatory subunit of trehalose-6-phosphate synthase/phosphatase	physical	1	1	1	Co-purification
TDA1	YMR291W	Protein kinase of unknown cellular role	physical	1	1	1	Co-purification
UBP15	YMR304W	Ubiquitin-specific protease involved in protein deubiquitination	physical	1	1	1	Co-purification
YMR315W	YMR315W	Protein with NADP(H) oxidoreductase activity	physical	1	1	1	Co-purification
YDJ1	YNL064C	Type I HSP40 co-chaperone	physical	1	1	1	Co-purification
YNL108C	YNL108C	Protein phosphatase	physical	1	1	1	Co-purification
YNL134C	YNL134C	NADH-dependent aldehyde reductase	physical	1	1	1	Co-purification
WHI3	YNL197C	RNA binding protein that modulates mRNA stability	physical	1	1	1	Co-purification
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	1	1	1	Co-purification
YNL234W	YNL234W	Protein of unknown function with similarity to globins	physical	1	1	1	Co-purification
ZWF1	YNL241C	Glucose-6-phosphate dehydrogenase (G6PD)	physical	1	1	1	Co-purification
TOS6	YNL300W	Glycosylphosphatidylinositol-dependent cell wall protein	physical	1	1	1	Co-purification
STB1	YNL309W	Protein with role in regulation of MBF-specific transcription at Start	physical	1	1	1	Co-purification
URK1	YNR012W	Uridine/cytidine kinase	physical	1	1	1	Co-purification
YNR029C	YNR029C	Putative protein of unknown function	physical	1	1	1	Co-purification
TRM112	YNR046W	Protein involved in methylation of tRNA, rRNA, and translation factors	physical	1	1	1	Co-purification
TSR4	YOL022C	Cytoplasmic assembly chaperone for ribosomal protein Rps2p	physical	1	1	1	Co-purification
YOL057W	YOL057W	Dipeptidyl-peptidase III	physical	1	1	1	Co-purification
WRS1	YOL097C	Cytoplasmic tryptophanyl-tRNA synthetase	physical	1	1	1	Co-purification
TRM11	YOL124C	Catalytic subunit of adoMet-dependent tRNA methyltransferase complex	physical	1	1	1	Co-purification
TRM13	YOL125W	2'-O-methyltransferase	physical	1	1	1	Co-purification
STI1	YOR027W	Evolutionarily-conserved Hsp90 cochaperone	physical	1	1	1	Co-purification
YOR111W	YOR111W	Putative protein of unknown function	physical	1	1	1	Co-purification
THI80	YOR143C	Thiamine pyrophosphokinase	physical	1	1	1	Co-purification
YOR238W	YOR238W	Putative protein of unknown function	physical	1	1	1	Co-purification
TUM1	YOR251C	Rhodanese domain sulfur transferase	physical	1	1	1	Co-purification
YOR283W	YOR283W	Phosphatase with a broad substrate specificity	physical	1	1	1	Co-purification
TFB6	YOR352W	Subunit of TFIIH complex	physical	1	1	1	Co-purification
VTS1	YOR359W	Flap-structured DNA-binding and RNA-binding protein	physical	1	1	1	Co-purification
TRM44	YPL030W	tRNA(Ser) Um(44) 2'-O-methyltransferase	physical	1	1	1	Co-purification
SVL3	YPL032C	Protein of unknown function	physical	1	1	1	Co-purification
VPS28	YPL065W	Component of the ESCRT-I complex	physical	1	1	1	Co-purification
UME1	YPL139C	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	1	1	1	Co-purification
THI6	YPL214C	Thiamine-phosphate diphosphorylase and hydroxyethylthiazole kinase	physical	1	1	1	Co-purification
YPL225W	YPL225W	Protein of unknown function	physical	1	1	1	Co-purification
YPL245W	YPL245W	Putative protein of unknown function	physical	1	1	1	Co-purification
YPL247C	YPL247C	Putative protein of unknown function	physical	1	1	1	Co-purification
TIP41	YPR040W	Tap42p-interacting protein	physical	1	1	1	Co-purification
TEF1	YPR080W	Translational elongation factor EF-1 alpha	physical	1	1	1	Co-purification
YPR127W	YPR127W	Putative pyridoxine 4-dehydrogenase	physical	1	1	1	Co-purification
YPR147C	YPR147C	Bifunctional triacylglycerol lipase and short chain ester hydrolase	physical	1	1	1	Co-purification
YPR172W	YPR172W	Protein of unknown function	physical	1	1	1	Co-purification
TRS20	YBR254C	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Co-purification
UBX7	YBR273C	UBX (ubiquitin regulatory X) domain-containing protein	physical	1	1	1	Co-purification
TRS85	YDR108W	Component of transport protein particle (TRAPP) complex III	physical	1	1	1	Co-purification
TRS23	YDR246W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Co-purification
TRS31	YDR472W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Co-purification
YDR476C	YDR476C	Putative protein of unknown function	physical	1	1	1	Co-purification
YER010C	YER010C	Bifunctional HMG aldolase/oxaloacetate decarboxylase	physical	1	1	1	Co-purification
TIR1	YER011W	Cell wall mannoprotein	physical	1	1	1	Co-purification
YPT31	YER031C	Rab family GTPase	physical	1	1	1	Co-purification
VTC1	YER072W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Co-purification
VFA1	YER128W	Protein that interacts with Vps4p and has a role in vacuolar sorting	physical	1	1	1	Co-purification
YER158C	YER158C	Protein of unknown function	physical	1	1	1	Co-purification
YER186C	YER186C	Putative protein of unknown function	physical	1	1	1	Co-purification
VTC2	YFL004W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Co-purification
VTC4	YJL012C	Vacuolar membrane polyphosphate polymerase	physical	1	1	1	Co-purification
VPH2	YKL119C	Integral membrane protein required for V-ATPase function	physical	1	1	1	Co-purification
YPT52	YKR014C	Endosomal Rab family GTPase	physical	1	1	1	Co-purification
YIP3	YNL044W	Protein localized to COPII vesicles	physical	1	1	1	Co-purification
TRS33	YOR115C	Core component of TRAPP complexes I, II and IV	physical	1	1	1	Co-purification
VTC3	YPL019C	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Co-purification
YPR063C	YPR063C	ER-localized protein of unknown function	physical	1	1	1	Co-purification
YBR016W	YBR016W	Tail-anchored plasma membrane protein with a conserved CYSTM module	physical	1	1	1	Co-purification
TIP1	YBR067C	Major cell wall mannoprotein with possible lipase activity	physical	1	1	1	Co-purification
VAC17	YCL063W	Phosphoprotein involved in vacuole inheritance	physical	1	1	1	Co-purification
VMA1	YDL185W	Subunit A of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Co-purification
YDL211C	YDL211C	Protein of unknown function	physical	1	1	1	Co-purification
VPS41	YDR080W	Subunit of the HOPS endocytic tethering complex	physical	1	1	1	Co-purification
TLG1	YDR468C	Essential t-SNARE that mediates fusion of vesicles with the late Golgi	physical	1	1	1	Co-purification
VMA8	YEL051W	Subunit D of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Co-purification
YPT32	YGL210W	Rab family GTPase involved in the exocytic pathway	physical	1	1	1	Co-purification
TRL1	YJL087C	tRNA ligase	physical	1	1	1	Co-purification
VPS35	YJL154C	Endosomal subunit of membrane-associated retromer complex	physical	1	1	1	Co-purification
VMA5	YKL080W	Subunit C of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Co-purification
UTH1	YKR042W	Mitochondrial inner membrane protein	physical	1	1	1	Co-purification
YLL053C	YLL053C	Putative protein	physical	1	1	1	Co-purification
VPS34	YLR240W	Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate	physical	1	1	1	Co-purification
YPT6	YLR262C	Rab family GTPase	physical	1	1	1	Co-purification
STE23	YLR389C	Metalloprotease	physical	1	1	1	Co-purification
VMA6	YLR447C	Subunit d of the V0 integral membrane domain of V-ATPase	physical	1	1	1	Co-purification
SST2	YLR452C	GTPase-activating protein for Gpa1p	physical	1	1	1	Co-purification
YPT7	YML001W	Rab family GTPase	physical	1	1	1	Co-purification
YMR160W	YMR160W	Protein of unknown function	physical	1	1	1	Co-purification
YPT11	YNL304W	Rab GTPase	physical	1	1	1	Co-purification
VPS17	YOR132W	Subunit of the membrane-associated retromer complex	physical	1	1	1	Co-purification
STE4	YOR212W	G protein beta subunit	physical	1	1	1	Co-purification
VMA4	YOR332W	Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase)	physical	1	1	1	Co-purification
VPS30	YPL120W	Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II	physical	1	1	1	Co-purification
TCO89	YPL180W	Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p)	physical	1	1	1	Co-purification
VMA13	YPR036W	Subunit H of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Co-purification
TFC3	YAL001C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Co-purification
TRX3	YCR083W	Mitochondrial thioredoxin	physical	1	1	1	Co-purification
YFH1	YDL120W	Mitochondrial matrix iron chaperone	physical	1	1	1	Co-purification
VPS54	YDR027C	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Co-purification
UPS3	YDR185C	Mitochondrial protein of unknown function	physical	1	1	1	Co-purification
YMR31	YFR049W	Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase	physical	1	1	1	Co-purification
TOM20	YGR082W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Co-purification
YGR266W	YGR266W	Protein of unknown function	physical	1	1	1	Co-purification
YIA6	YIL006W	Mitochondrial NAD+ transporter	physical	1	1	1	Co-purification
TIM17	YJL143W	Essential component of the TIM23 complex	physical	1	1	1	Co-purification
TES1	YJR019C	Peroxisomal acyl-CoA thioesterase	physical	1	1	1	Co-purification
SSC1	YJR045C	Hsp70 family ATPase	genetic	1	1	1	Negative Genetic
TMH11	YJR085C	Mitochondrial protein of unknown function	physical	1	1	1	Co-purification
YKT6	YKL196C	Vesicle membrane protein (v-SNARE) with acyltransferase activity	physical	1	1	1	Co-purification
YKR070W	YKR070W	Putative protein of unknown function	physical	1	1	1	Co-purification
UPS2	YLR168C	Mitochondrial intermembrane space protein	physical	1	1	1	Co-purification
UPS1	YLR193C	Phosphatidic acid transfer protein	physical	1	1	1	Co-purification
UNG1	YML021C	Uracil-DNA glycosylase	physical	1	1	1	Co-purification
YML6	YML025C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
TOM40	YMR203W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Co-purification
ZIM17	YNL310C	Protein co-chaperone with a zinc finger motif	physical	1	1	1	Co-purification
VPS21	YOR089C	Endosomal Rab family GTPase	physical	1	1	1	Co-purification
TIM18	YOR297C	Component of the mitochondrial TIM22 complex	physical	1	1	1	Co-purification
YAH1	YPL252C	Ferredoxin of the mitochondrial matrix	physical	1	1	1	Co-purification
YMC1	YPR058W	Secondary mitochondrial inner membrane glycine transporter	physical	1	1	1	Co-purification
TMH18	YPR098C	Mitochondrial protein of unknown function	physical	1	1	1	Co-purification
YBR053C	YBR053C	Putative protein of unknown function	physical	1	1	1	Co-purification
YBR062C	YBR062C	Protein of unknown function that interacts with Msb2p	physical	1	1	1	Co-purification
YBR225W	YBR225W	Putative protein of unknown function	physical	1	1	1	Co-purification
TSC10	YBR265W	3-ketosphinganine reductase	physical	1	1	1	Co-purification
YCR102C	YCR102C	Putative quinone oxidoreductase	physical	1	1	1	Co-purification
VTC5	YDR089W	Novel subunit of the vacuolar transporter chaperone complex	physical	1	1	1	Co-purification
TRM1	YDR120C	tRNA methyltransferase	physical	1	1	1	Co-purification
YDR541C	YDR541C	Aldehyde reductase	physical	1	1	1	Co-purification
YPT1	YFL038C	Rab family GTPase	physical	1	1	1	Co-purification
YFH7	YFR007W	Putative kinase with similarity to the PRK/URK/PANK kinase subfamily	physical	1	1	1	Co-purification
TYW3	YGL050W	tRNA methyltransferase required for synthesis of wybutosine	physical	1	1	1	Co-purification
VPS45	YGL095C	Protein of the Sec1p/Munc-18 family	physical	1	1	1	Co-purification
YGL159W	YGL159W	Putative protein of unknown function	physical	1	1	1	Co-purification
YGL242C	YGL242C	Protein of unknown function	physical	1	1	1	Co-purification
YPP1	YGR198W	Cargo-transport protein involved in endocytosis	physical	1	1	1	Co-purification
THR1	YHR025W	Homoserine kinase	physical	1	1	1	Co-purification
YHI9	YHR029C	Protein of unknown function	physical	1	1	1	Co-purification
YJL218W	YJL218W	Mitochondrial protein, putative acetyltransferase	physical	1	1	1	Co-purification
YJR142W	YJR142W	8-oxo-dGTP diphosphatase of the Nudix hydrolase family	physical	1	1	1	Co-purification
STB6	YKL072W	Protein that binds Sin3p in a two-hybrid assay	physical	1	1	1	Co-purification
YJU3	YKL094W	Monoglyceride lipase (MGL) that hydrolyzes fatty acid ethyl esters	physical	1	1	1	Co-purification
YKL106C-A	YKL106C-A	Putative protein of unknown function	physical	1	1	1	Co-purification
TRM2	YKR056W	tRNA methyltransferase	physical	1	1	1	Co-purification
YLL058W	YLL058W	Putative protein of unknown function with similarity to Str2p	physical	1	1	1	Co-purification
XYL2	YLR070C	Xylitol dehydrogenase	physical	1	1	1	Co-purification
YLR446W	YLR446W	Putative hexokinase	physical	1	1	1	Co-purification
YLR460C	YLR460C	Member of the quinone oxidoreductase family	physical	1	1	1	Co-purification
YIM1	YMR152W	Aldehyde reductase	physical	1	1	1	Co-purification
SSO2	YMR183C	Plasma membrane t-SNARE	physical	1	1	1	Co-purification
YMR265C	YMR265C	Putative protein of unknown function	physical	1	1	1	Co-purification
YMR321C	YMR321C	Putative protein of unknown function	physical	1	1	1	Co-purification
YNL165W	YNL165W	Putative protein of unknown function	physical	1	1	1	Co-purification
YNL193W	YNL193W	Putative protein of unknown function	physical	1	1	1	Co-purification
YIF1	YNL263C	Integral membrane protein	physical	1	1	1	Co-purification
TIR2	YOR010C	Putative cell wall mannoprotein	physical	1	1	1	Co-purification
WHI2	YOR043W	Negative regulator of TORC1 in response to limiting leucine	physical	1	1	1	Co-purification
ULA1	YPL003W	Protein that activates Rub1p (NEDD8) before neddylation	physical	1	1	1	Co-purification
YPL039W	YPL039W	Putative protein of unknown function	physical	1	1	1	Co-purification
YPL113C	YPL113C	Glyoxylate reductase	physical	1	1	1	Co-purification
YPL150W	YPL150W	Protein kinase of unknown cellular role	physical	1	1	1	Co-purification
TAH18	YPR048W	Conserved NAPDH-dependent diflavin reductase	physical	1	1	1	Co-purification
YKL033W-A	YKL033W-A	Protein of unknown function	physical	1	1	1	Co-purification
YNL054W-A	YNL054W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Co-purification
SWD1	YAR003W	Subunit of the COMPASS (Set1C) complex	physical	1	1	1	Co-purification
TEC1	YBR083W	Transcription factor targeting filamentation genes and Ty1 expression	physical	1	1	1	Co-purification
UBS1	YBR165W	Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p	physical	1	1	1	Co-purification
SWD3	YBR175W	Essential subunit of the COMPASS (Set1C) complex	physical	1	1	1	Co-purification
TDP1	YBR223C	Tyrosyl-DNA phosphodiesterase I	physical	1	1	1	Co-purification
TUP1	YCR084C	General repressor of transcription in complex with Cyc8p	physical	1	1	1	Co-purification
UBC9	YDL064W	SUMO-conjugating enzyme involved in the Smt3p conjugation pathway	physical	1	1	1	Co-purification
SUB2	YDL084W	Component of the TREX complex required for nuclear mRNA export	physical	1	1	1	Co-purification
TRM8	YDL201W	Catalytic subunit of a tRNA methyltransferase complex	physical	1	1	1	Co-purification
TMA64	YDR117C	Protein of unknown function that associates with ribosomes	physical	1	1	1	Co-purification
TRM82	YDR165W	Noncatalytic subunit of a tRNA methyltransferase complex	physical	1	1	1	Co-purification
SWM1	YDR260C	Subunit of the anaphase-promoting complex (APC)	physical	1	1	1	Co-purification
XRS2	YDR369C	FHA domain-containing component of the Mre11 complex	physical	1	1	1	Co-purification
UBA2	YDR390C	Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Aos1p	physical	1	1	1	Co-purification
UTP5	YDR398W	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	1	1	1	Co-purification
SYF1	YDR416W	Member of the NineTeen Complex (NTC)	physical	1	1	1	Co-purification
YHP1	YDR451C	Homeobox transcriptional repressor	physical	1	1	1	Co-purification
STP1	YDR463W	Transcription factor	physical	1	1	1	Co-purification
TPA1	YER049W	Prolyl hydroxylase	physical	1	1	1	Co-purification
VHR2	YER064C	Non-essential nuclear protein	physical	1	1	1	Co-purification
SWP82	YFL049W	Member of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Co-purification
TAF6	YGL112C	Subunit (60 kDa) of TFIID and SAGA complexes	physical	1	1	1	Co-purification
SWC4	YGR002C	Component of the Swr1p complex that incorporates Htz1p into chromatin	physical	1	1	1	Co-purification
TFC4	YGR047C	Subunit of RNA polymerase III transcription initiation factor complex	physical	1	1	1	Co-purification
UTP22	YGR090W	Component of the small-subunit processome	physical	1	1	1	Co-purification
THP2	YHR167W	Subunit of the THO and TREX complexes	physical	1	1	1	Co-purification
UTP25	YIL091C	Nucleolar protein	physical	1	1	1	Co-purification
SSL2	YIL143C	Component of RNA polymerase transcription factor TFIIH holoenzyme	physical	1	1	1	Co-purification
STS1	YIR011C	Protein required for localizing proteasomes to the nucleus	physical	1	1	1	Co-purification
UTP18	YJL069C	Small-subunit processome protein involved in pre-18S rRNA maturation	physical	1	1	1	Co-purification
SWD2	YKL018W	Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex	physical	1	1	1	Co-purification
UTP11	YKL099C	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	1	1	1	Co-purification
YRA2	YKL214C	Member of the REF (RNA and export factor binding proteins) family	physical	1	1	1	Co-purification
YKR011C	YKR011C	Protein of unknown function	physical	1	1	1	Co-purification
UTP30	YKR060W	Subunit of U3-containing 90S preribosome complex	physical	1	1	1	Co-purification
TFA2	YKR062W	TFIIE small subunit	physical	1	1	1	Co-purification
STP3	YLR375W	Zinc-finger protein of unknown function	physical	1	1	1	Co-purification
UTP21	YLR409C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	1	1	1	Co-purification
YOX1	YML027W	Homeobox transcriptional repressor	physical	1	1	1	Co-purification
UTP15	YMR093W	Nucleolar protein	physical	1	1	1	Co-purification
TAF9	YMR236W	Subunit (17 kDa) of TFIID and SAGA complexes	physical	1	1	1	Co-purification
YMR310C	YMR310C	Putative methyltransferase	physical	1	1	1	Co-purification
YNL035C	YNL035C	Nuclear protein of unknown function	physical	1	1	1	Co-purification
SSU72	YNL222W	Phosphatase and transcription/RNA-processing factor	physical	1	1	1	Co-purification
VPS75	YNL246W	NAP family histone chaperone	physical	1	1	1	Co-purification
TEX1	YNL253W	Protein involved in mRNA export	physical	1	1	1	Co-purification
THP1	YOL072W	Nuclear pore-associated protein	physical	1	1	1	Co-purification
TPT1	YOL102C	tRNA 2'-phosphotransferase that catalyzes final step in tRNA splicing	physical	1	1	1	Co-purification
TMC1	YOR052C	AN1-type zinc finger protein, effector of proteotoxic stress response	physical	1	1	1	Co-purification
WTM2	YOR229W	Transcriptional modulator	physical	1	1	1	Co-purification
WTM1	YOR230W	Transcriptional modulator	physical	1	1	1	Co-purification
YTM1	YOR272W	Ribosomal assembly factor and 66S pre-ribosomal particle constituent	physical	1	1	1	Co-purification
SWI1	YPL016W	Subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Co-purification
SSN3	YPL042C	Component of the RNA polymerase II mediator complex	physical	1	1	1	Co-purification
YPL068C	YPL068C	Protein of unknown function	physical	1	1	1	Co-purification
TFB2	YPL122C	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	1	1	1	Co-purification
TBF1	YPL128C	Telobox-containing general regulatory factor	physical	1	1	1	Co-purification
TAF14	YPL129W	Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes	physical	1	1	1	Co-purification
TGS1	YPL157W	Trimethyl guanosine synthase, conserved nucleolar methyl transferase	physical	1	1	1	Co-purification
TPK2	YPL203W	cAMP-dependent protein kinase catalytic subunit	physical	1	1	1	Co-purification
VIK1	YPL253C	Protein that forms a kinesin-14 heterodimeric motor with Kar3p	physical	1	1	1	Co-purification
SUT2	YPR009W	Zn2Cys6 family transcription factor	physical	1	1	1	Co-purification
SUA7	YPR086W	Transcription factor TFIIB	physical	1	1	1	Co-purification
YBL036C	YBL036C	Putative non-specific single-domain racemase	physical	1	1	1	Co-purification
URA7	YBL039C	Major CTP synthase isozyme (see also URA8)	physical	1	1	1	Co-purification
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	physical	1	1	1	Co-purification
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	genetic	1	1	1	Phenotypic Enhancement
SYP1	YCR030C	Negative regulator of WASP-Arp23 complex	physical	1	1	1	Co-purification
YCR043C	YCR043C	Putative protein of unknown function	physical	1	1	1	Co-purification
UBC5	YDR059C	Ubiquitin-conjugating enzyme	physical	1	1	1	Co-purification
UBC1	YDR177W	Ubiquitin-conjugating enzyme	physical	1	1	1	Co-purification
TIF35	YDR429C	eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Co-purification
UGA1	YGR019W	Gamma-aminobutyrate (GABA) transaminase	physical	1	1	1	Co-purification
YGR283C	YGR283C	Putative methyltransferase	physical	1	1	1	Co-purification
VPS29	YHR012W	Subunit of the membrane-associated retromer complex	physical	1	1	1	Co-purification
YAP1801	YHR161C	Protein of the AP180 family, involved in clathrin cage assembly	physical	1	1	1	Co-purification
URA8	YJR103W	Minor CTP synthase isozyme (see also URA7)	physical	1	1	1	Co-purification
TEM1	YML064C	GTPase involved in initiation of Mitotic Exit Network (MEN)	physical	1	1	1	Co-purification
TIF34	YMR146C	eIF3i subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Co-purification
YMR295C	YMR295C	Protein of unknown function that associates with ribosomes	physical	1	1	1	Co-purification
URE2	YNL229C	Nitrogen catabolite repression transcriptional regulator	physical	1	1	1	Co-purification
SUI1	YNL244C	Translation initiation factor eIF1	physical	1	1	1	Co-purification
YPR015C	YPR015C	Putative zinc finger transcription factor	physical	1	1	1	Co-purification
TIF5	YPR041W	Translation initiation factor eIF5	physical	1	1	1	Co-purification
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	physical	1	1	1	Affinity Capture-MS
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	genetic	1	1	1	Dosage Rescue
TIF4631	YGR162W	Translation initiation factor eIF4G and scaffold protein	physical	1	1	1	Affinity Capture-MS
VID30	YGL227W	Central component of GID Complex, involved in FBPase degradation	physical	1	1	1	Affinity Capture-MS
UTP10	YJL109C	Nucleolar protein	physical	1	1	1	Affinity Capture-MS
TOM22	YNL131W	Component of the TOM (Translocase of Outer Membrane) complex	physical	1	1	1	Affinity Capture-MS
STT3	YGL022W	Catalytic subunit of the oligosaccharyltransferase complex of the ER l	genetic	1	1	1	Negative Genetic
YHC1	YLR298C	Component of the U1 snRNP complex required for pre-mRNA splicing	genetic	1	1	1	Negative Genetic
TAD3	YLR316C	Subunit of tRNA-specific adenosine-34 deaminase	genetic	1	1	1	Negative Genetic
SWF1	YDR126W	Palmitoyltransferase that acts on transmembrane proteins	genetic	1	1	1	Negative Genetic
YPR089W	YPR089W	Protein of unknown function	genetic	1	1	1	Negative Genetic
YME1	YPR024W	Catalytic subunit of i-AAA protease complex	genetic	1	1	1	Dosage Rescue
TOM70	YNL121C	Component of the TOM (translocase of outer membrane) complex	genetic	1	1	1	Dosage Rescue
RPS20	YHL015W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPL18A	YOL120C	Ribosomal 60S subunit protein L18A	physical	1	1	1	Co-purification
RPL18B	YNL301C	Ribosomal 60S subunit protein L18B	physical	1	1	1	Co-purification
RPS23A	YGR118W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
LEU1	YGL009C	Isopropylmalate isomerase	physical	1	1	1	Co-purification
INN1	YNL152W	Essential protein that associates with contractile actomyosin ring	physical	1	1	1	Co-purification
MCR1	YKL150W	Mitochondrial NADH-cytochrome b5 reductase	physical	1	1	1	Co-purification
ABZ1	YNR033W	Para-aminobenzoate (PABA) synthase	physical	1	1	1	Co-purification
RRS1	YOR294W	Essential protein that binds ribosomal protein L11	physical	1	1	1	Co-purification
RPS14A	YCR031C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPL13A	YDL082W	Ribosomal 60S subunit protein L13A	physical	1	1	1	Co-purification
RPL14B	YHL001W	Ribosomal 60S subunit protein L14B	physical	1	1	1	Co-purification
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	physical	1	1	1	Co-purification
RPL7A	YGL076C	Ribosomal 60S subunit protein L7A	physical	1	1	1	Co-purification
RPL15A	YLR029C	Ribosomal 60S subunit protein L15A	physical	1	1	1	Co-purification
RPL19B	YBL027W	Ribosomal 60S subunit protein L19B	physical	1	1	1	Co-purification
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	physical	1	1	1	Co-purification
RPL27B	YDR471W	Ribosomal 60S subunit protein L27B	physical	1	1	1	Co-purification
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	physical	1	1	1	Co-purification
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	physical	1	1	1	Co-purification
LYS21	YDL131W	Homocitrate synthase isozyme	physical	1	1	1	Co-purification
ASN2	YGR124W	Asparagine synthetase	physical	1	1	1	Co-purification
ORM2	YLR350W	Protein that mediates sphingolipid homeostasis	physical	1	1	1	Co-purification
SBE22	YHR103W	Protein involved in bud growth	physical	1	1	1	Co-purification
ILV6	YCL009C	Regulatory subunit of acetolactate synthase	physical	1	1	1	Co-purification
MEU1	YLR017W	Methylthioadenosine phosphorylase (MTAP)	physical	1	1	1	Co-purification
SAC7	YDR389W	GTPase activating protein (GAP) for Rho1p	physical	1	1	1	Co-purification
ARO8	YGL202W	Aromatic aminotransferase I	physical	1	1	1	Co-purification
CCC1	YLR220W	Vacuolar Fe2+/Mn2+ transporter	physical	1	1	1	Co-purification
IDS2	YJL146W	Protein involved in modulation of Ime2p activity during meiosis	physical	1	1	1	Co-purification
HBS1	YKR084C	GTPase with similarity to translation release factors	physical	1	1	1	Co-purification
INH1	YDL181W	Protein that inhibits ATP hydrolysis by the F1F0-ATP synthase	physical	1	1	1	Co-purification
EPO1	YMR124W	Protein involved in septin-ER tethering	physical	1	1	1	Co-purification
PAC1	YOR269W	Regulator of dynein, involved in intracellular transport	physical	1	1	1	Co-purification
KIP2	YPL155C	Kinesin-related motor protein involved in mitotic spindle positioning	physical	1	1	1	Co-purification
FUR1	YHR128W	Uracil phosphoribosyltransferase	physical	1	1	1	Co-purification
RPL16B	YNL069C	Ribosomal 60S subunit protein L16B	physical	1	1	1	Co-purification
PBN1	YCL052C	Component of glycosylphosphatidylinositol-mannosyltransferase I	physical	1	1	1	Co-purification
SDH3	YKL141W	Subunit of succinate dehydrogenase and of TIM22 translocase	physical	1	1	1	Co-purification
SNZ3	YFL059W	Pyridoxal-5'-phosphate synthase	physical	1	1	1	Co-purification
GLR1	YPL091W	Cytosolic and mitochondrial glutathione oxidoreductase	physical	1	1	1	Co-purification
HSP26	YBR072W	Small heat shock protein (sHSP) with chaperone activity	physical	1	1	1	Co-purification
SPT23	YKL020C	ER membrane protein involved in regulation of OLE1 transcription	physical	1	1	1	Co-purification
ROY1	YMR258C	GTPase inhibitor with similarity to F-box proteins	physical	1	1	1	Co-purification
RPL36B	YPL249C-A	Ribosomal 60S subunit protein L36B	physical	1	1	1	Co-purification
PLP2	YOR281C	Protein that interacts with the CCT complex to stimulate actin folding	physical	1	1	1	Co-purification
PIH1	YHR034C	Component of the conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1)	physical	1	1	1	Co-purification
ADE1	YAR015W	N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase	physical	1	1	1	Co-purification
HCM1	YCR065W	Forkhead transcription factor	physical	1	1	1	Co-purification
HSP31	YDR533C	Methylglyoxalase that converts methylglyoxal to D-lactate	physical	1	1	1	Co-purification
COQ9	YLR201C	Protein required for ubiquinone biosynthesis and respiratory growth	physical	1	1	1	Co-purification
ATF1	YOR377W	Alcohol acetyltransferase	physical	1	1	1	Co-purification
BTS1	YPL069C	Geranylgeranyl diphosphate synthase (GGPPS)	physical	1	1	1	Co-purification
HLR1	YDR528W	Protein involved in regulation of cell wall composition and integrity	physical	1	1	1	Co-purification
FRA1	YLL029W	Protein involved in negative regulation of iron regulon transcription	physical	1	1	1	Co-purification
COQ3	YOL096C	O-methyltransferase	physical	1	1	1	Co-purification
DUS3	YLR401C	Dihydrouridine synthase	physical	1	1	1	Co-purification
BCH2	YKR027W	Member of the ChAPs (Chs5p-Arf1p-binding proteins) family	physical	1	1	1	Co-purification
JHD2	YJR119C	JmjC domain family histone demethylase	physical	1	1	1	Co-purification
RUP1	YOR138C	Protein that regulates ubiquitination of Rsp5p	physical	1	1	1	Co-purification
INP1	YMR204C	Peripheral membrane protein of peroxisomes	physical	1	1	1	Co-purification
MIG2	YGL209W	Zinc finger transcriptional repressor	physical	1	1	1	Co-purification
CFD1	YIL003W	Highly conserved iron-sulfur cluster binding protein	physical	1	1	1	Co-purification
HAM1	YJR069C	Nucleoside triphosphate pyrophosphohydrolase	physical	1	1	1	Co-purification
ANT1	YPR128C	Peroxisomal adenine nucleotide transporter	physical	1	1	1	Co-purification
PAM17	YKR065C	Constituent of the TIM23 complex	physical	1	1	1	Co-purification
MXR1	YER042W	Methionine-S-sulfoxide reductase	physical	1	1	1	Co-purification
MIG3	YER028C	Transcriptional regulator	physical	1	1	1	Co-purification
RFA2	YNL312W	Subunit of heterotrimeric Replication Protein A (RPA)	physical	1	1	1	Co-purification
PYK2	YOR347C	Pyruvate kinase	physical	1	1	1	Co-purification
RPL40A	YIL148W	Ubiquitin-ribosomal 60S subunit protein L40A fusion protein	physical	1	1	1	Co-purification
RPS31	YLR167W	Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin	physical	1	1	1	Co-purification
DSF2	YBR007C	Deletion suppressor of mpt5 mutation	physical	1	1	1	Co-purification
BNA7	YDR428C	Formylkynurenine formamidase	physical	1	1	1	Co-purification
ATP14	YLR295C	Subunit h of the F0 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Co-purification
ATP16	YDL004W	Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Co-purification
DIC1	YLR348C	Mitochondrial dicarboxylate carrier	physical	1	1	1	Co-purification
BTT1	YDR252W	Heterotrimeric nascent polypeptide-associated complex beta3 subunit	genetic	1	1	1	Synthetic Growth Defect
ERG7	YHR072W	Lanosterol synthase	physical	1	1	1	Co-purification
EHT1	YBR177C	Octanoyl-CoA:ethanol acyltransferase	physical	1	1	1	Co-purification
RIM1	YCR028C-A	ssDNA-binding protein essential for mitochondrial genome maintenance	physical	1	1	1	Co-purification
BOL3	YAL046C	Protein involved in Fe-S cluster transfer to mitochondrial clients	physical	1	1	1	Co-purification
BDH1	YAL060W	NAD-dependent (R,R)-butanediol dehydrogenase	physical	1	1	1	Co-purification
IRC7	YFR055W	Cysteine desulphydrase, enables growth on cysteine as nitrogen source	physical	1	1	1	Co-purification
NTH2	YBR001C	Putative neutral trehalase, required for thermotolerance	physical	1	1	1	Co-purification
GLK1	YCL040W	Glucokinase	physical	1	1	1	Co-purification
MAP1	YLR244C	Methionine aminopeptidase	physical	1	1	1	Co-purification
LYS20	YDL182W	Homocitrate synthase isozyme and functions in DNA repair	physical	1	1	1	Co-purification
DCC1	YCL016C	Subunit of a complex with Ctf8p and Ctf18p	physical	1	1	1	Co-purification
NGR1	YBR212W	RNA binding protein that negatively regulates growth rate	physical	1	1	1	Co-purification
HYR1	YIR037W	Glutathione peroxidase	physical	1	1	1	Co-purification
ARI1	YGL157W	NADPH-dependent aldehyde reductase	physical	1	1	1	Co-purification
SOL2	YCR073W-A	Protein with a possible role in tRNA export	physical	1	1	1	Co-purification
PUS9	YDL036C	Mitochondrial tRNA:pseudouridine synthase	physical	1	1	1	Co-purification
SRP14	YDL092W	Signal recognition particle (SRP) subunit	physical	1	1	1	Co-purification
BPL1	YDL141W	Biotin:apoprotein ligase	physical	1	1	1	Co-purification
COQ10	YOL008W	Coenzyme Q (ubiquinone) binding protein	physical	1	1	1	Co-purification
NTH1	YDR001C	Neutral trehalase, degrades trehalose	physical	1	1	1	Co-purification
EKI1	YDR147W	Ethanolamine kinase	physical	1	1	1	Co-purification
HXK1	YFR053C	Hexokinase isoenzyme 1	physical	1	1	1	Co-purification
RPS10B	YMR230W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
BUL2	YML111W	Alpha-arrestin, component of the Rsp5p E3-ubiquitin ligase complex	physical	1	1	1	Co-purification
PAM1	YDR251W	Essential protein of unknown function	physical	1	1	1	Co-purification
GLO2	YDR272W	Cytoplasmic glyoxalase II	physical	1	1	1	Co-purification
NAT5	YOR253W	Subunit of protein N-terminal acetyltransferase NatA	physical	1	1	1	Co-purification
PUF4	YGL014W	Member of the PUF protein family	physical	1	1	1	Co-purification
GID11	YLR149C	Substrate receptor of the glucose-induced degradation-deficient (GID)	physical	1	1	1	Co-purification
RAD30	YDR419W	DNA polymerase eta	physical	1	1	1	Co-purification
IRC22	YEL001C	Protein of unknown function	physical	1	1	1	Co-purification
GUK1	YDR454C	Guanylate kinase	physical	1	1	1	Co-purification
PDC2	YDR081C	Transcription factor for thiamine-regulated genes	physical	1	1	1	Co-purification
COQ11	YLR290C	Putative oxidoreductase, subunit of Coenzyme Q biosynthetic complexes	physical	1	1	1	Co-purification
ACP1	YKL192C	Mitochondrial matrix acyl carrier protein	physical	1	1	1	Co-purification
MRPS8	YMR158W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
ADE16	YLR028C	Enzyme of 'de novo' purine biosynthesis	physical	1	1	1	Co-purification
GRX4	YER174C	Glutathione-dependent oxidoreductase and glutathione S-transferase	physical	1	1	1	Co-purification
HIS2	YFR025C	Histidinolphosphatase	physical	1	1	1	Co-purification
DCG1	YIR030C	Protein of unknown function	physical	1	1	1	Co-purification
BNA1	YJR025C	3-hydroxyanthranilic acid dioxygenase	physical	1	1	1	Co-purification
NPY1	YGL067W	NADH diphosphatase (pyrophosphatase)	physical	1	1	1	Co-purification
CRS1	YNL247W	Cysteinyl-tRNA synthetase	physical	1	1	1	Co-purification
MET12	YPL023C	Protein with MTHFR activity in vitro	physical	1	1	1	Co-purification
LCB5	YLR260W	Minor sphingoid long-chain base kinase	physical	1	1	1	Co-purification
ARA2	YMR041C	NAD-dependent arabinose dehydrogenase	physical	1	1	1	Co-purification
PPT1	YGR123C	Protein serine/threonine phosphatase	physical	1	1	1	Co-purification
CSR1	YLR380W	Phosphatidylinositol transfer protein	physical	1	1	1	Co-purification
IMP21	YIL154C	Transcriptional activator involved in maintenance of ion homeostasis	physical	1	1	1	Co-purification
CAB4	YGR277C	Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC)	physical	1	1	1	Co-purification
GRE3	YHR104W	Aldose reductase	physical	1	1	1	Co-purification
ORC4	YPR162C	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Co-purification
PPX1	YHR201C	Exopolyphosphatase	physical	1	1	1	Co-purification
HIS6	YIL020C	Enzyme that catalyzes the fourth step in the histidine pathway	physical	1	1	1	Co-purification
MMF1	YIL051C	Mitochondrial protein required for transamination of isoleucine	physical	1	1	1	Co-purification
SEC28	YIL076W	Epsilon-COP subunit of the coatomer	physical	1	1	1	Co-purification
RSM24	YDR175C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
RSM25	YIL093C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
ALD6	YPL061W	Cytosolic aldehyde dehydrogenase	physical	1	1	1	Co-purification
CYB5	YNL111C	Cytochrome b5	physical	1	1	1	Co-purification
FUN14	YAL008W	Integral mitochondrial outer membrane (MOM) protein	physical	1	1	1	Co-purification
RTT101	YJL047C	Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex	physical	1	1	1	Co-purification
MUK1	YPL070W	Guanine nucleotide exchange factor (GEF)	physical	1	1	1	Co-purification
CGI121	YML036W	Component of the EKC/KEOPS complex	physical	1	1	1	Co-purification
CTP1	YBR291C	Mitochondrial inner membrane citrate transporter	physical	1	1	1	Co-purification
KIN4	YOR233W	Serine/threonine protein kinase	physical	1	1	1	Co-purification
CWP2	YKL096W-A	Covalently linked cell wall mannoprotein	physical	1	1	1	Co-purification
PMU1	YKL128C	Putative phosphomutase	physical	1	1	1	Co-purification
SAC1	YKL212W	Phosphatidylinositol phosphate phosphatase	physical	1	1	1	Co-purification
INA17	YPL099C	F1F0 ATPase synthase peripheral stalk assembly factor	physical	1	1	1	Co-purification
CYK3	YDL117W	SH3-domain protein located in the bud neck and cytokinetic actin ring	physical	1	1	1	Co-purification
KAE1	YKR038C	Highly conserved ATPase of HSP70/DnaK family	physical	1	1	1	Co-purification
FMP46	YKR049C	Putative redox protein containing a thioredoxin fold	physical	1	1	1	Co-purification
RDH54	YBR073W	DNA-dependent ATPase	physical	1	1	1	Co-purification
RTT109	YLL002W	Histone acetyltransferase	physical	1	1	1	Co-purification
RIA1	YNL163C	Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis	physical	1	1	1	Co-purification
ALD2	YMR170C	Cytoplasmic aldehyde dehydrogenase	physical	1	1	1	Co-purification
RNH201	YNL072W	Ribonuclease H2 catalytic subunit	physical	1	1	1	Co-purification
MSA2	YKR077W	Putative transcriptional activator	physical	1	1	1	Co-purification
MSS51	YLR203C	Specific translational activator for the mitochondrial COX1 mRNA	physical	1	1	1	Co-purification
GCV3	YAL044C	H subunit of the mitochondrial glycine decarboxylase complex	physical	1	1	1	Co-purification
ATG33	YLR356W	Mitochondrial mitophagy-specific protein	physical	1	1	1	Co-purification
RAD33	YML011C	Protein involved in nucleotide excision repair	physical	1	1	1	Co-purification
MRPL40	YPL173W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
SPG5	YMR191W	Protein required for proteasome assembly during quiescence	physical	1	1	1	Co-purification
FMS1	YMR020W	Polyamine oxidase	physical	1	1	1	Co-purification
SEC14	YMR079W	Phosphatidylinositol/phosphatidylcholine transfer protein	physical	1	1	1	Co-purification
MGR1	YCL044C	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	physical	1	1	1	Co-purification
HFD1	YMR110C	Dehydrogenase involved in ubiquinone and sphingolipid metabolism	physical	1	1	1	Co-purification
IDP1	YDL066W	Mitochondrial NADP-specific isocitrate dehydrogenase	physical	1	1	1	Co-purification
PAD1	YDR538W	Phenylacrylic acid decarboxylase	physical	1	1	1	Co-purification
SFB2	YNL049C	Component of the Sec23p-Sfb2p heterodimer of the COPII vesicle coat	physical	1	1	1	Co-purification
CUZ1	YNL155W	Protein with a role in the ubiquitin-proteasome pathway	physical	1	1	1	Co-purification
RPL42A	YNL162W	Ribosomal 60S subunit protein L42A	physical	1	1	1	Co-purification
FMP41	YNL168C	Putative protein of unknown function	physical	1	1	1	Co-purification
MRPL22	YNL177C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
ADE12	YNL220W	Adenylosuccinate synthase	physical	1	1	1	Co-purification
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	physical	1	1	1	Affinity Capture-MS
FOL1	YNL256W	Multifunctional enzyme of the folic acid biosynthesis pathway	physical	1	1	1	Co-purification
SOL1	YNR034W	Protein with a possible role in tRNA export	physical	1	1	1	Co-purification
MRPS12	YNR036C	Mitochondrial protein	physical	1	1	1	Co-purification
SGT2	YOR007C	Glutamine-rich cytoplasmic cochaperone	physical	1	1	1	Co-purification
SHM2	YLR058C	Cytosolic serine hydroxymethyltransferase	physical	1	1	1	Co-purification
GLN4	YOR168W	Glutamine tRNA synthetase	physical	1	1	1	Co-purification
MSB1	YOR188W	Protein of unknown function	physical	1	1	1	Co-purification
NPT1	YOR209C	Nicotinate phosphoribosyltransferase	physical	1	1	1	Co-purification
SAS5	YOR213C	Subunit of the SAS complex (Sas2p, Sas4p, Sas5p)	physical	1	1	1	Co-purification
RGL1	YPL066W	Regulator of Rho1p signaling, cofactor of Tus1p	physical	1	1	1	Co-purification
IRC25	YLR021W	Component of a heterodimeric Poc4p-Irc25p chaperone	physical	1	1	1	Co-purification
CUP9	YPL177C	Homeodomain-containing transcriptional repressor	physical	1	1	1	Co-purification
OXP1	YKL215C	5-oxoprolinase	physical	1	1	1	Co-purification
AHC2	YCR082W	Component of the ADA histone acetyltransferase complex	physical	1	1	1	Co-purification
PFK26	YIL107C	6-phosphofructo-2-kinase	physical	1	1	1	Co-purification
RPS6A	YPL090C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
PHO13	YDL236W	Conserved phosphatase acting as a metabolite repair enzyme	physical	1	1	1	Co-purification
HEM12	YDR047W	Uroporphyrinogen decarboxylase	physical	1	1	1	Co-purification
RPL12A	YEL054C	Ribosomal 60S subunit protein L12A	physical	1	1	1	Co-purification
EGH1	YIR007W	Steryl-beta-glucosidase with broad specificity for aglycones	physical	1	1	1	Co-purification
ABZ2	YMR289W	Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase)	physical	1	1	1	Co-purification
SPE2	YOL052C	S-adenosylmethionine decarboxylase	physical	1	1	1	Co-purification
PML39	YML107C	Protein required for nuclear retention of unspliced pre-mRNAs	physical	1	1	1	Co-purification
SDD2	YMR074C	Protein with homology to human PDCD5	physical	1	1	1	Co-purification
FOL3	YMR113W	Dihydrofolate synthetase, involved in folic acid biosynthesis	physical	1	1	1	Co-purification
APD1	YBR151W	2Fe-2S cytosolic protein of unknown function	physical	1	1	1	Co-purification
LAP3	YNL239W	Cysteine aminopeptidase with homocysteine-thiolactonase activity	physical	1	1	1	Co-purification
PSF3	YOL146W	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	physical	1	1	1	Co-purification
LDB19	YOR322C	Alpha-arrestin, Ub-ligase adaptor for Rsp5p	physical	1	1	1	Co-purification
RPS9A	YPL081W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
SRP68	YPL243W	Core component of the signal recognition particle (SRP) complex	physical	1	1	1	Co-purification
PSA1	YDL055C	GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)	physical	1	1	1	Co-purification
ARO3	YDR035W	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Co-purification
PHB2	YGR231C	Subunit of the prohibitin complex (Phb1p-Phb2p)	physical	1	1	1	Affinity Capture-MS
RPL24A	YGL031C	Ribosomal 60S subunit protein L24A	physical	1	1	1	Co-purification
RPL20A	YMR242C	Ribosomal 60S subunit protein L20A	physical	1	1	1	Co-purification
RPS22B	YLR367W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
SDD3	YOL098C	Putative metalloprotease	physical	1	1	1	Co-purification
RPS0B	YLR048W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
SEH1	YGL100W	Subunit of the Nup84 nuclear pore and SEACAT subcomplexes	physical	1	1	1	Co-purification
RPL4B	YDR012W	Ribosomal 60S subunit protein L4B	physical	1	1	1	Co-purification
RPL13B	YMR142C	Ribosomal 60S subunit protein L13B	physical	1	1	1	Co-purification
RPS16A	YMR143W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPL7B	YPL198W	Ribosomal 60S subunit protein L7B	physical	1	1	1	Co-purification
SPB4	YFL002C	Putative ATP-dependent RNA helicase	physical	1	1	1	Co-purification
RPL8B	YLL045C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Co-purification
PRI2	YKL045W	Subunit of DNA primase	physical	1	1	1	Co-purification
ACL4	YDR161W	Specific assembly chaperone for ribosomal protein Rpl4a/Rpl4b	physical	1	1	1	Co-purification
RPS7B	YNL096C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
PMS1	YNL082W	ATP-binding protein required for mismatch repair	physical	1	1	1	Co-purification
RPL17B	YJL177W	Ribosomal 60S subunit protein L17B	physical	1	1	1	Co-purification
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS14B	YJL191W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPL19A	YBR084C-A	Ribosomal 60S subunit protein L19A	physical	1	1	1	Co-purification
RPL35A	YDL191W	Ribosomal 60S subunit protein L35A	physical	1	1	1	Co-purification
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	physical	1	1	1	Co-purification
RPS21A	YKR057W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPL8A	YHL033C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Co-purification
RFS1	YBR052C	Protein of unknown function	physical	1	1	1	Co-purification
RPL33B	YOR234C	Ribosomal 60S subunit protein L33B	physical	1	1	1	Co-purification
RPL6A	YML073C	Ribosomal 60S subunit protein L6A	physical	1	1	1	Co-purification
CHS6	YJL099W	Member of the ChAPs (Chs5p-Arf1p-binding proteins) family	physical	1	1	1	Co-purification
NUP192	YJL039C	Essential subunit of inner ring of nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-MS
DPH5	YLR172C	Methyltransferase required for synthesis of diphthamide	physical	1	1	1	Co-purification
SLM3	YDL033C	tRNA-specific 2-thiouridylase	physical	1	1	1	Co-purification
GVP36	YIL041W	BAR domain protein that localizes to early and late Golgi vesicles	physical	1	1	1	Co-purification
CLB4	YLR210W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Co-purification
ISR1	YPR106W	Predicted protein kinase	physical	1	1	1	Co-purification
IDI1	YPL117C	Isopentenyl diphosphate:dimethylallyl diphosphate isomerase	physical	1	1	1	Co-purification
SLD5	YDR489W	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	physical	1	1	1	Co-purification
ARO2	YGL148W	Bifunctional chorismate synthase and flavin reductase	physical	1	1	1	Co-purification
GUA1	YMR217W	GMP synthase	physical	1	1	1	Co-purification
RPL35B	YDL136W	Ribosomal 60S subunit protein L35B	physical	1	1	1	Co-purification
RPL36A	YMR194W	Ribosomal 60S subunit protein L36A	physical	1	1	1	Co-purification
LDB7	YBL006C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Co-purification
RPL26A	YLR344W	Ribosomal 60S subunit protein L26A	physical	1	1	1	Co-purification
RPL26B	YGR034W	Ribosomal 60S subunit protein L26B	physical	1	1	1	Co-purification
RPL34A	YER056C-A	Ribosomal 60S subunit protein L34A	physical	1	1	1	Co-purification
RPL34B	YIL052C	Ribosomal 60S subunit protein L34B	physical	1	1	1	Co-purification
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS19B	YNL302C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
RPS19A	YOL121C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
ATG21	YPL100W	Phosphoinositide binding protein	physical	1	1	1	Co-purification
AIM29	YKR074W	Protein of unknown function	physical	1	1	1	Co-purification
AVT3	YKL146W	Vacuolar transporter	physical	1	1	1	Co-purification
CCW22	YDR134C	Cell wall protein	physical	1	1	1	Co-purification
ADD37	YMR184W	Protein of unknown function	physical	1	1	1	Co-purification
CAB1	YDR531W	Pantothenate kinase, ATP:D-pantothenate 4'-phosphotransferase	physical	1	1	1	Co-purification
AIM11	YER093C-A	Protein of unknown function	physical	1	1	1	Co-purification
AST1	YBL069W	Lipid raft associated protein	physical	1	1	1	Co-purification
GGC1	YDL198C	Mitochondrial GTP/GDP transporter	physical	1	1	1	Co-purification
DUS1	YML080W	Dihydrouridine synthase	physical	1	1	1	Co-purification
MSN4	YKL062W	Stress-responsive transcriptional activator	physical	1	1	1	Co-purification
PCM1	YEL058W	Essential N-acetylglucosamine-phosphate mutase	physical	1	1	1	Co-purification
PDX3	YBR035C	Pyridoxine (pyridoxamine) phosphate oxidase	physical	1	1	1	Co-purification
PHO91	YNR013C	Low-affinity vacuolar phosphate transporter	physical	1	1	1	Affinity Capture-MS
NMT1	YLR195C	N-myristoyl transferase	physical	1	1	1	Co-purification
DIF1	YLR437C	Protein that regulates nuclear import of Rnr2p and Rnr4p	physical	1	1	1	Co-purification
MNR2	YKL064W	Vacuolar membrane protein required for magnesium homeostasis	physical	1	1	1	Co-purification
MLF3	YNL074C	Serine-rich protein of unknown function	physical	1	1	1	Co-purification
OSH7	YHR001W	Oxysterol-binding phosphatidylserine transferase	physical	1	1	1	Co-purification
EMC4	YGL231C	Member of conserved ER transmembrane complex	physical	1	1	1	Co-purification
PTP1	YDL230W	Phosphotyrosine-specific protein phosphatase	physical	1	1	1	Co-purification
HIS5	YIL116W	Histidinol-phosphate aminotransferase	physical	1	1	1	Co-purification
RCM1	YNL022C	rRNA m5C methyltransferase	physical	1	1	1	Co-purification
SCS22	YBL091C-A	Protein involved in regulation of phospholipid metabolism	physical	1	1	1	Co-purification
SKY1	YMR216C	SR protein kinase (SRPK)	physical	1	1	1	Co-purification
MET2	YNL277W	L-homoserine-O-acetyltransferase	physical	1	1	1	Co-purification
PUF2	YPR042C	PUF family mRNA-binding protein	physical	1	1	1	Affinity Capture-RNA
SMY1	YKL079W	Kinesin-like myosin passenger-protein	physical	1	1	1	Co-purification
SCH9	YHR205W	AGC family protein kinase	genetic	1	1	1	Phenotypic Suppression
SDS23	YGL056C	Protein involved in cell separation during budding	physical	1	1	1	Co-purification
MIC26	YGR235C	Component of the MICOS complex	physical	1	1	1	Co-purification
HUR1	YGL168W	Protein with a role in DNA repair	genetic	1	1	1	Negative Genetic
DDP1	YOR163W	Diadenosine and diphosphoinositol polyphosphate phosphatase	physical	1	1	1	Co-purification
PAN5	YHR063C	2-dehydropantoate 2-reductase	physical	1	1	1	Co-purification
SET4	YJL105W	Chromatin-associated protein involved in control of stress response	physical	1	1	1	Affinity Capture-MS
DOT5	YIL010W	Nuclear thiol peroxidase	physical	1	1	1	Co-purification
CYC1	YJR048W	Cytochrome c, isoform 1	physical	1	1	1	Co-purification
PRX1	YBL064C	Mitochondrial peroxiredoxin with thioredoxin peroxidase activity	physical	1	1	1	Co-purification
PYP1	YNL010W	Sugar alcohol phosphatase	physical	1	1	1	Co-purification
RPS18B	YML026C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
CYT1	YOR065W	Cytochrome c1	physical	1	1	1	Co-purification
NRM1	YNR009W	Transcriptional co-repressor of MBF-regulated gene expression	physical	1	1	1	Co-purification
RSM27	YGR215W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Co-purification
MRPL49	YJL096W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
RPL14A	YKL006W	Ribosomal 60S subunit protein L14A	physical	1	1	1	Co-purification
RKI1	YOR095C	Ribose-5-phosphate ketol-isomerase	physical	1	1	1	Co-purification
ALG13	YGL047W	Catalytic component of UDP-GlcNAc transferase	physical	1	1	1	Co-purification
RPL15B	YMR121C	Ribosomal 60S subunit protein L15B	physical	1	1	1	Co-purification
RPL2B	YIL018W	Ribosomal 60S subunit protein L2B	physical	1	1	1	Co-purification
ERV1	YGR029W	Flavin-linked sulfhydryl oxidase of the mitochondrial IMS	physical	1	1	1	Co-purification
OSH6	YKR003W	Oxysterol-binding phosphatidylserine transferase	physical	1	1	1	Co-purification
COX11	YPL132W	Protein required for delivery of copper to Cox1p	physical	1	1	1	Co-purification
RIB1	YBL033C	GTP cyclohydrolase II	physical	1	1	1	Co-purification
RRT2	YBR246W	Methylesterase performing penultimate step of diphthamide biosynthesis	physical	1	1	1	Co-purification
ASP1	YDR321W	Cytosolic L-asparaginase, involved in asparagine catabolism	physical	1	1	1	Co-purification
HPA3	YEL066W	D-Amino acid N-acetyltransferase that detoxifies D-amino acids	physical	1	1	1	Co-purification
MRX18	YBR056W	Putative glycoside hydrolase of the mitochondrial intermembrane space	physical	1	1	1	Co-purification
MRX18	YBR056W	Putative glycoside hydrolase of the mitochondrial intermembrane space	genetic	1	1	1	Negative Genetic
HEM2	YGL040C	Aminolevulinate dehydratase	physical	1	1	1	Co-purification
QNS1	YHR074W	Glutamine-dependent NAD(+) synthetase	physical	1	1	1	Co-purification
APE4	YHR113W	Cytoplasmic aspartyl aminopeptidase with possible vacuole function	physical	1	1	1	Co-purification
SPG3	YDR504C	Protein required for high temperature survival during stationary phase	physical	1	1	1	Co-purification
MET3	YJR010W	ATP sulfurylase	physical	1	1	1	Co-purification
PHD1	YKL043W	Transcriptional activator that enhances pseudohyphal growth	physical	1	1	1	Co-purification
COQ2	YNR041C	Para hydroxybenzoate polyprenyl transferase	physical	1	1	1	Co-purification
RPP1B	YDL130W	Ribosomal protein P1 beta	physical	1	1	1	Co-purification
RIM13	YMR154C	Calpain-like cysteine protease	physical	1	1	1	Co-purification
RIB3	YDR487C	3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase)	physical	1	1	1	Co-purification
PNC1	YGL037C	Nicotinamidase that converts nicotinamide to nicotinic acid	physical	1	1	1	Co-purification
PNP1	YLR209C	Purine nucleoside phosphorylase	physical	1	1	1	Co-purification
RDL1	YOR285W	Thiosulfate sulfurtransferase	physical	1	1	1	Co-purification
RHO3	YIL118W	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	physical	1	1	1	Co-purification
MDM34	YGL219C	Mitochondrial component of the ERMES complex	physical	1	1	1	Affinity Capture-MS
PCS60	YBR222C	Oxalyl-CoA synthetase	physical	1	1	1	Co-purification
MET7	YOR241W	Folylpolyglutamate synthetase	physical	1	1	1	Co-purification
MPS3	YJL019W	Nuclear envelope protein	physical	1	1	1	Affinity Capture-MS
COQ4	YDR204W	Protein with a role in ubiquinone (Coenzyme Q) biosynthesis	physical	1	1	1	Co-purification
NPR1	YNL183C	Protein kinase	physical	1	1	1	Co-purification
RPL22B	YFL034C-A	Ribosomal 60S subunit protein L22A	physical	1	1	1	Co-purification
RPL31B	YLR406C	Ribosomal 60S subunit protein L31B	physical	1	1	1	Co-purification
RPS16B	YDL083C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
COA1	YIL157C	Mitochondrial inner membrane protein	physical	1	1	1	Co-purification
RIP1	YEL024W	Ubiquinol-cytochrome-c reductase	physical	1	1	1	Co-purification
KIP3	YGL216W	Kinesin-related antiparallel sliding motor protein	physical	1	1	1	Co-purification
ECM13	YBL043W	Non-essential protein of unknown function	genetic	1	1	1	Dosage Rescue
FPY1	YMR178W	FAD pyrophosphatase	physical	1	1	1	Co-purification
SLI15	YBR156C	Subunit of the conserved chromosomal passenger complex (CPC)	physical	1	1	1	Co-purification
SOK2	YMR016C	Nuclear protein that negatively regulates pseudohyphal differentiation	physical	1	1	1	Co-purification
SOK2	YMR016C	Nuclear protein that negatively regulates pseudohyphal differentiation	genetic	1	1	1	Negative Genetic
RER2	YBR002C	Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1	physical	1	1	1	Co-purification
RER2	YBR002C	Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1	genetic	1	1	1	Dosage Rescue
SCY1	YGL083W	Putative kinase	physical	1	1	1	Co-purification
CIS3	YJL158C	Mannose-containing glycoprotein constituent of the cell wall	physical	1	1	1	Co-purification
PRY1	YJL079C	Lipid binding protein	physical	1	1	1	Co-purification
MSA1	YOR066W	Activator of G1-specific transcription factors MBF and SBF	physical	1	1	1	Co-purification
PIS1	YPR113W	Phosphatidylinositol synthase	physical	1	1	1	Co-purification
GPX2	YBR244W	Phospholipid hydroperoxide glutathione peroxidase	physical	1	1	1	Co-purification
GRX3	YDR098C	Glutathione-dependent oxidoreductase	physical	1	1	1	Co-purification
SEY1	YOR165W	Dynamin-like GTPase that mediates homotypic ER fusion	physical	1	1	1	Co-purification
MET8	YBR213W	Bifunctional dehydrogenase and ferrochelatase	physical	1	1	1	Co-purification
RIB5	YBR256C	Riboflavin synthase	physical	1	1	1	Co-purification
MIM1	YOL026C	Mitochondrial protein required for outer membrane protein import	physical	1	1	1	Co-purification
RBS1	YDL189W	Protein involved in assembly of the RNA Pol III complex	physical	1	1	1	Co-purification
EFR3	YMR212C	Protein required for Stt4-containing PI kinase complex localization	physical	1	1	1	Co-purification
SFB3	YHR098C	Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat	physical	1	1	1	Co-purification
FAA3	YIL009W	Long chain fatty acyl-CoA synthetase	physical	1	1	1	Co-purification
SQT1	YIR012W	Specific assembly chaperone for ribosomal protein Rpl10p	physical	1	1	1	Co-purification
CCW12	YLR110C	Cell wall mannoprotein	physical	1	1	1	Co-purification
ARO7	YPR060C	Chorismate mutase	physical	1	1	1	Co-purification
NIT3	YLR351C	Nit protein	physical	1	1	1	Co-purification
BOL1	YAL044W-A	Mitochondrial matrix protein involved in Fe-S cluster biogenesis	physical	1	1	1	Co-purification
SLM4	YBR077C	Subunit of the EGO/GSE complex	physical	1	1	1	Co-purification
MRN1	YPL184C	RNA-binding protein that may be involved in translational regulation	physical	1	1	1	Co-purification
FRT1	YOR324C	Tail-anchored ER membrane protein of unknown function	physical	1	1	1	Co-purification
HPT1	YDR399W	Dimeric hypoxanthine-guanine phosphoribosyltransferase	physical	1	1	1	Co-purification
NRE1	YIR035C	Putative cytoplasmic short-chain dehydrogenase/reductase	physical	1	1	1	Co-purification
IRC24	YIR036C	Putative benzil reductase	physical	1	1	1	Co-purification
RPE1	YJL121C	D-ribulose-5-phosphate 3-epimerase	physical	1	1	1	Co-purification
CDC8	YJR057W	Nucleoside monophosphate and nucleoside diphosphate kinase	genetic	1	1	1	Negative Genetic
RAM2	YKL019W	Alpha subunit of farnesyltransferase and geranylgeranyltransferase-I	physical	1	1	1	Co-purification
NFU1	YKL040C	Protein involved in Fe-S cluster transfer to mitochondrial clients	physical	1	1	1	Co-purification
MTC2	YKL098W	Protein of unknown function	physical	1	1	1	Co-purification
SRY1	YKL218C	3-hydroxyaspartate dehydratase	physical	1	1	1	Co-purification
SHB17	YKR043C	Sedoheptulose bisphosphatase involved in riboneogenesis	physical	1	1	1	Co-purification
ISC1	YER019W	Inositol phosphosphingolipid phospholipase C	physical	1	1	1	Co-purification
BUD16	YEL029C	Putative pyridoxal kinase	physical	1	1	1	Co-purification
DUS4	YLR405W	Dihydrouridine synthase	physical	1	1	1	Co-purification
GRX2	YDR513W	Cytoplasmic glutaredoxin	physical	1	1	1	Co-purification
DAK1	YML070W	Dihydroxyacetone kinase	physical	1	1	1	Co-purification
DSE2	YHR143W	Daughter cell-specific secreted protein with similarity to glucanases	physical	1	1	1	Co-purification
FIT2	YOR382W	Mannoprotein that is incorporated into the cell wall	physical	1	1	1	Co-purification
AGA2	YGL032C	Adhesion subunit of a-agglutinin of a-cells	physical	1	1	1	Co-purification
GCG1	YER163C	Gamma-glutamyl cyclotransferase	physical	1	1	1	Co-purification
FIT3	YOR383C	Mannoprotein that is incorporated into the cell wall	physical	1	1	1	Co-purification
AFT2	YPL202C	Iron-regulated transcriptional activator	physical	1	1	1	Co-purification
ALK1	YGL021W	Atypical protein kinase	physical	1	1	1	Co-purification
PEX4	YGR133W	Peroxisomal ubiquitin conjugating enzyme	physical	1	1	1	Co-purification
COX13	YGL191W	Subunit VIa of cytochrome c oxidase	physical	1	1	1	Co-purification
RFU1	YLR073C	Protein that inhibits Doa4p deubiquitinating activity	physical	1	1	1	Co-purification
CLB6	YGR109C	B-type cyclin involved in DNA replication during S phase	physical	1	1	1	Co-purification
MRS4	YKR052C	Iron transporter of the mitochondrial carrier family	physical	1	1	1	Co-purification
RMD8	YFR048W	Cytosolic protein required for sporulation	physical	1	1	1	Co-purification
NDD1	YOR372C	Transcriptional activator essential for nuclear division	physical	1	1	1	Co-purification
DUG3	YNL191W	Component of glutamine amidotransferase (GATase II)	physical	1	1	1	Co-purification
GIS3	YLR094C	Protein of unknown function	physical	1	1	1	Co-purification
APT2	YDR441C	Potential adenine phosphoribosyltransferase	physical	1	1	1	Co-purification
MET13	YGL125W	Major isozyme of methylenetetrahydrofolate reductase	physical	1	1	1	Co-purification
PHA2	YNL316C	Prephenate dehydratase	physical	1	1	1	Co-purification
LCB4	YOR171C	Sphingoid long-chain base kinase	physical	1	1	1	Co-purification
SCW10	YMR305C	Cell wall protein with similarity to glucanases	physical	1	1	1	Co-purification
PIR1	YKL164C	O-glycosylated protein required for cell wall stability	physical	1	1	1	Co-purification
RHB1	YCR027C	Putative Rheb-related GTPase	physical	1	1	1	Co-purification
QRI1	YDL103C	UDP-N-acetylglucosamine pyrophosphorylase	physical	1	1	1	Co-purification
QRI1	YDL103C	UDP-N-acetylglucosamine pyrophosphorylase	genetic	1	1	1	Negative Genetic
RPH1	YER169W	JmjC domain-containing histone demethylase	physical	1	1	1	Co-purification
RPS25A	YGR027C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
GLO1	YML004C	Monomeric glyoxalase I	physical	1	1	1	Co-purification
REX4	YOL080C	Putative RNA exonuclease	physical	1	1	1	Co-purification
GRE2	YOL151W	3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase	physical	1	1	1	Co-purification
APA2	YDR530C	Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase II	physical	1	1	1	Co-purification
NCS2	YNL119W	Protein required for uridine thiolation of Lys(UUU) and Glu(UUC) tRNAs	physical	1	1	1	Co-purification
NCS6	YGL211W	Protein required for uridine thiolation of Gln, Lys, and Glu tRNAs	physical	1	1	1	Co-purification
HIS1	YER055C	ATP phosphoribosyltransferase	physical	1	1	1	Co-purification
ERG9	YHR190W	Farnesyl-diphosphate farnesyl transferase (squalene synthase)	physical	1	1	1	Co-purification
HTS1	YPR033C	Cytoplasmic and mitochondrial histidine tRNA synthetase	physical	1	1	1	Co-purification
RPL33A	YPL143W	Ribosomal 60S subunit protein L33A	physical	1	1	1	Co-purification
MYG1	YER156C	Protein involved in mitochondrial function	physical	1	1	1	Co-purification
RPL12B	YDR418W	Ribosomal 60S subunit protein L12B	physical	1	1	1	Co-purification
HIS7	YBR248C	Imidazole glycerol phosphate synthase	physical	1	1	1	Co-purification
RPS6B	YBR181C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
PRD1	YCL057W	Zinc metalloendopeptidase	physical	1	1	1	Co-purification
MTC3	YGL226W	Protein of unknown function	physical	1	1	1	Co-purification
SFH5	YJL145W	Unusual phosphatidylinositol transfer protein (PITP) that binds heme	physical	1	1	1	Co-purification
MRX14	YDR115W	Putative mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MPC1	YGL080W	Highly conserved subunit of mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Co-purification
MRPL31	YKL138C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
MIC12	YBR262C	Component of the MICOS complex	physical	1	1	1	Co-purification
LYS5	YGL154C	Phosphopantetheinyl transferase involved in lysine biosynthesis	physical	1	1	1	Co-purification
FAU1	YER183C	5,10-methenyltetrahydrofolate synthetase	physical	1	1	1	Co-purification
DOG2	YHR043C	2-deoxyglucose-6-phosphate phosphatase	physical	1	1	1	Co-purification
FSH3	YOR280C	Putative serine hydrolase	physical	1	1	1	Co-purification
ECM4	YKR076W	S-glutathionyl-(chloro)hydroquinone reductase (GS-HQR)	physical	1	1	1	Co-purification
ARR1	YPR199C	Transcriptional activator of the basic leucine zipper (bZIP) family	physical	1	1	1	Co-purification
LOG1	YJL055W	Putative protein of unknown function	physical	1	1	1	Co-purification
MZM1	YDR493W	Protein required for assembly of the cytochrome bc(1) complex	physical	1	1	1	Co-purification
MPC2	YHR162W	Highly conserved subunit of the mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Co-purification
MRM2	YGL136C	Mitochondrial 2' O-ribose methyltransferase	physical	1	1	1	Co-purification
CRD1	YDL142C	Cardiolipin synthase	physical	1	1	1	Co-purification
CRD1	YDL142C	Cardiolipin synthase	genetic	1	1	1	Negative Genetic
LMO1	YLL007C	Homolog of mammalian ELMO (Engulfment and celL MOtility)	physical	1	1	1	Co-purification
CYT2	YKL087C	Cytochrome c1 heme lyase	physical	1	1	1	Co-purification
HEL1	YKR017C	RING finger ubiquitin ligase (E3)	physical	1	1	1	Co-purification
ERG12	YMR208W	Mevalonate kinase	physical	1	1	1	Co-purification
EFM4	YIL064W	Lysine methyltransferase	physical	1	1	1	Co-purification
HBN1	YCL026C-B	Protein of unknown function	physical	1	1	1	Co-purification
APS3	YJL024C	Small subunit of the clathrin-associated adaptor complex AP-3	physical	1	1	1	Co-purification
MCT1	YOR221C	Predicted malonyl-CoA:ACP transferase	physical	1	1	1	Co-purification
MIC10	YCL057C-A	Conserved component of the MICOS complex	physical	1	1	1	Co-purification
GSH2	YOL049W	Glutathione synthetase	physical	1	1	1	Co-purification
MRPL37	YBR268W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Co-purification
DSD1	YGL196W	D-serine dehydratase (aka D-serine ammonia-lyase)	physical	1	1	1	Co-purification
HEM3	YDL205C	Porphobilinogen deaminase	physical	1	1	1	Co-purification
CAB2	YIL083C	Phosphopantothenoylcysteine synthetase (PPCS)	physical	1	1	1	Co-purification
ERG8	YMR220W	Phosphomevalonate kinase	physical	1	1	1	Co-purification
ICL2	YPR006C	2-methylisocitrate lyase of the mitochondrial matrix	physical	1	1	1	Co-purification
DPI34	YOR114W	Putative mitochondrial protein of unknown function	physical	1	1	1	Co-purification
CTR86	YCR054C	Essential protein of unknown function	physical	1	1	1	Co-purification
DFR1	YOR236W	Dihydrofolate reductase involved in tetrahydrofolate biosynthesis	physical	1	1	1	Co-purification
RPL24B	YGR148C	Ribosomal 60S subunit protein L24B	physical	1	1	1	Co-purification
REH1	YLR387C	Cytoplasmic 60S subunit biogenesis factor	physical	1	1	1	Co-purification
POR2	YIL114C	Putative mitochondrial porin (voltage-dependent anion channel)	physical	1	1	1	Co-purification
GCV2	YMR189W	P subunit of the mitochondrial glycine decarboxylase complex	physical	1	1	1	Co-purification
NMA111	YNL123W	Serine protease and general molecular chaperone	physical	1	1	1	Co-purification
RPL21B	YPL079W	Ribosomal 60S subunit protein L21B	physical	1	1	1	Co-purification
PMP3	YDR276C	Small plasma membrane protein	physical	1	1	1	Co-purification
PMP1	YCR024C-A	Regulatory subunit for the plasma membrane H(+)-ATPase Pma1p	physical	1	1	1	Affinity Capture-RNA
MRS3	YJL133W	Iron transporter, mediates Fe2+ transport across inner mito membrane	physical	1	1	1	Co-purification
MMM1	YLL006W	ER integral membrane protein, ERMES complex subunit	physical	1	1	1	Affinity Capture-MS
SEC72	YLR292C	Non-essential subunit of Sec63 complex	physical	1	1	1	Co-purification
ODC1	YPL134C	Mitochondrial inner membrane transporter	physical	1	1	1	Co-purification
ALK2	YBL009W	Atypical protein kinase	physical	1	1	1	Co-purification
MPM1	YJL066C	Mitochondrial intermembrane space protein of unknown function	physical	1	1	1	Co-purification
PTK1	YKL198C	Putative serine/threonine protein kinase	physical	1	1	1	Co-purification
SHM1	YBR263W	Mitochondrial serine hydroxymethyltransferase	physical	1	1	1	Co-purification
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
EMC2	YJR088C	Member of conserved ER transmembrane complex	physical	1	1	1	Co-purification
SPE1	YKL184W	Ornithine decarboxylase	physical	1	1	1	Co-purification
ENV9	YOR246C	Conserved oxidoreductase involved in lipid droplet morphology	physical	1	1	1	Co-purification
ECT1	YGR007W	Ethanolamine-phosphate cytidylyltransferase	physical	1	1	1	Co-purification
EFM2	YBR271W	S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Co-purification
FSH1	YHR049W	Lysophospholipase	physical	1	1	1	Co-purification
RIB2	YOL066C	Bifunctional DRAP deaminase tRNA:pseudouridine synthase	physical	1	1	1	Co-purification
PXP2	YJR111C	Peroxisomal matrix protein with naturally active promoter	physical	1	1	1	Co-purification
NNT1	YLR285W	S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Co-purification
RKM5	YLR137W	Protein lysine methyltransferase	physical	1	1	1	Co-purification
PET54	YGR222W	Mitochondrial inner membrane protein	physical	1	1	1	Co-purification
POF1	YCL047C	Nicotinamide mononucleotide-specific adenylyltransferase (NMNAT)	physical	1	1	1	Co-purification
BMT6	YLR063W	Methyltransferase required for m3U2843 methylation of the 25S rRNA	physical	1	1	1	Co-purification
AIM36	YMR157C	Protein of unknown function	physical	1	1	1	Co-purification
MGR2	YPL098C	Subunit of the TIM23 translocase complex	genetic	1	1	1	Dosage Rescue
HST2	YPL015C	Cytoplasmic NAD(+)-dependent protein deacetylase	physical	1	1	1	Co-purification
SDH4	YDR178W	Membrane anchor subunit of succinate dehydrogenase (SDH)	physical	1	1	1	Co-purification
RCF2	YNR018W	Cytochrome c oxidase subunit	physical	1	1	1	Co-purification
SDH8	YBR269C	Protein required for assembly of succinate dehydrogenase	physical	1	1	1	Co-purification
SFA1	YDL168W	Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase	physical	1	1	1	Co-purification
SCS3	YGL126W	Protein required for normal ER membrane biosynthesis in response to ER	physical	1	1	1	PCA
RPL42B	YHR141C	Ribosomal 60S subunit protein L42B	physical	1	1	1	Co-purification
RPS21B	YJL136C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
REE1	YJL217W	Cytoplasmic protein involved in the regulation of enolase (ENO1)	physical	1	1	1	Co-purification
FSH2	YMR222C	Putative serine hydrolase that localizes to the cytoplasm	physical	1	1	1	Co-purification
NNR1	YNL200C	NADHX epimerase	physical	1	1	1	Co-purification
SDH5	YOL071W	Protein required for flavinylation of Sdh1p	physical	1	1	1	Co-purification
ORT1	YOR130C	Ornithine transporter of the mitochondrial inner membrane	physical	1	1	1	Co-purification
RPS28A	YOR167C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Co-purification
SCP1	YOR367W	Component of yeast cortical actin cytoskeleton	physical	1	1	1	Co-purification
BNA4	YBL098W	Kynurenine 3-monooxygenase	physical	1	1	1	Co-purification
SHC1	YER096W	Sporulation-specific activator of Chs3p (chitin synthase III)	physical	1	1	1	Co-purification
SER2	YGR208W	Phosphoserine phosphatase of the phosphoglycerate pathway	physical	1	1	1	Co-purification
SEI1	YLR404W	Seipin involved in lipid droplet (LD) assembly	genetic	1	1	1	Negative Genetic
DPI35	YMR130W	Putative mitochondrial protein of unknown function	physical	1	1	1	Co-purification
NAR1	YNL240C	Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery	physical	1	1	1	Co-purification
MET22	YOL064C	Bisphosphate-3'-nucleotidase	physical	1	1	1	Co-purification
SFM1	YOR021C	SPOUT methyltransferase	physical	1	1	1	Co-purification
IAH1	YOR126C	Isoamyl acetate-hydrolyzing esterase	physical	1	1	1	Co-purification
PAN6	YIL145C	Pantothenate synthase	physical	1	1	1	Co-purification
SEC12	YNR026C	Guanine nucleotide exchange factor (GEF)	physical	1	1	1	Co-purification
SEC12	YNR026C	Guanine nucleotide exchange factor (GEF)	genetic	1	1	1	Negative Genetic
AIF1	YNR074C	Mitochondrial cell death effector	physical	1	1	1	Co-purification
SRP72	YPL210C	Core component of the signal recognition particle (SRP)	physical	1	1	1	Co-purification
RKR1	YMR247C	RING domain E3 ubiquitin ligase	genetic	1	1	1	Synthetic Rescue
FDC1	YDR539W	Ferulic acid decarboxylase	physical	1	1	1	Co-purification
CWP1	YKL096W	Cell wall mannoprotein that localizes to birth scars of daughter cells	physical	1	1	1	Co-purification
ATP23	YNR020C	Putative metalloprotease of the mitochondrial inner membrane	physical	1	1	1	Co-purification
ICT1	YLR099C	Lysophosphatidic acid acyltransferase	physical	1	1	1	Co-purification
IRC21	YMR073C	Protein of unknown function	physical	1	1	1	Co-purification
PDE2	YOR360C	High-affinity cyclic AMP phosphodiesterase	physical	1	1	1	Co-purification
PGC1	YPL206C	Phosphatidylglycerol phospholipase C	physical	1	1	1	Co-purification
RRT6	YGL146C	Integral membrane protein, member of the p24 family	physical	1	1	1	Co-purification
RRM3	YHR031C	DNA helicase involved in rDNA replication and Ty1 transposition	physical	1	1	1	Co-purification
NIT2	YJL126W	Nit protein	physical	1	1	1	Co-purification
PPM1	YDR435C	Carboxyl methyltransferase	physical	1	1	1	Co-purification
SDH7	YDR511W	Mitochondrial protein involved in assembly of succinate dehydrogenase	physical	1	1	1	Co-purification
DXO1	YDR370C	Cytoplasmic 5' exoribonuclease	physical	1	1	1	Co-purification
CTM1	YHR109W	Cytochrome c lysine methyltransferase	physical	1	1	1	Co-purification
SOL3	YHR163W	6-phosphogluconolactonase	physical	1	1	1	Co-purification
HPM1	YIL110W	AdoMet-dependent methyltransferase	physical	1	1	1	Co-purification
REX3	YLR107W	RNA exonuclease	physical	1	1	1	Co-purification
SPE4	YLR146C	Spermine synthase	physical	1	1	1	Co-purification
PRM15	YMR278W	Phosphoribomutase	physical	1	1	1	Co-purification
NRK1	YNL129W	Nicotinamide riboside kinase	physical	1	1	1	Co-purification
SMM1	YNR015W	Dihydrouridine synthase	physical	1	1	1	Co-purification
HNT3	YOR258W	DNA 5' AMP hydrolase involved in DNA repair	physical	1	1	1	Co-purification
SAM4	YPL273W	S-adenosylmethionine-homocysteine methyltransferase	physical	1	1	1	Co-purification
RCF3	YBR255C-A	Mitochondrial inner membrane protein	physical	1	1	1	Co-purification
PHM6	YDR281C	Protein of unknown function	physical	1	1	1	Co-purification
NFG1	YLR042C	Cell wall protein of unknown function	physical	1	1	1	Co-purification
MRX11	YPL041C	Protein that associates with mitochondrial ribosome	physical	1	1	1	Co-purification
SEN34	YAR008W	Subunit of the tRNA splicing endonuclease	physical	1	1	1	Co-purification
RML2	YEL050C	Mitochondrial ribosomal protein of the large subunit (L2)	physical	1	1	1	Co-purification
PCP1	YGR101W	Mitochondrial serine protease	physical	1	1	1	Co-purification
AAT1	YKL106W	Mitochondrial aspartate aminotransferase	physical	1	1	1	Co-purification
ODC2	YOR222W	Mitochondrial inner membrane transporter	physical	1	1	1	Co-purification
RDL2	YOR286W	Protein with rhodanese activity	physical	1	1	1	Co-purification
RTC6	YPL183W-A	Protein involved in translation	physical	1	1	1	Co-purification
OXR1	YPL196W	Protein involved in regulation of vacuolar V-ATPase	physical	1	1	1	Co-purification
SDT1	YGL224C	Pyrimidine nucleotidase	physical	1	1	1	Co-purification
RBH1	YJL181W	Putative protein of unknown function	physical	1	1	1	Co-purification
MLO50	YLR049C	Mitochondrial protein of unknown function	physical	1	1	1	Co-purification
HEM4	YOR278W	Uroporphyrinogen III synthase	physical	1	1	1	Co-purification
RME1	YGR044C	Zinc finger protein involved in control of meiosis	physical	1	1	1	Co-purification
SHQ1	YIL104C	Chaperone protein	physical	1	1	1	Co-purification
RSF2	YJR127C	Zinc-finger protein	physical	1	1	1	Co-purification
LDH1	YBR204C	Serine hydrolase	physical	1	1	1	Co-purification