GEnome-wide tool for Multi-scale Modeling
data Extraction and Representation
for Saccharomyces cerevisiae

List of interactors

Use the search utility to find the interactor you are looking for. By clicking the column headers the table will be sorted on that column. Use shift+click to sort on multiple columns. Default sorting is on number of experiments, number of unique methods and the number of publications, and alphabetical on standard name, in that order.

Standard name	Systematic name	Name description	Type	#Experiments	#Methods	#Publications	Evidence
KAP104	YBR017C	Transportin or cytosolic karyopherin beta 2	physical	13	4	10	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Two-hybrid, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Two-hybrid, Reconstituted Complex, Reconstituted Complex, Affinity Capture-MS
GFD1	YMR255W	Coiled-coiled protein of unknown function	physical	12	6	8	Two-hybrid, Two-hybrid, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Reconstituted Complex, Affinity Capture-RNA, Co-crystal Structure, Reconstituted Complex, Reconstituted Complex, Affinity Capture-MS, Affinity Capture-MS
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	physical	11	5	7	Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-Western, Two-hybrid, Reconstituted Complex, Affinity Capture-MS
MLP1	YKR095W	Myosin-like protein associated with the nuclear envelope	physical	11	5	7	Affinity Capture-Western, Two-hybrid, Affinity Capture-Western, Reconstituted Complex, Two-hybrid, Reconstituted Complex, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
MEX67	YPL169C	Poly(A)RNA binding protein involved in nuclear mRNA export	physical	10	5	6	Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-Western, Two-hybrid, Reconstituted Complex, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS
CBC2	YPL178W	Small subunit of the heterodimeric cap binding complex with Sto1p	physical	9	4	7	Affinity Capture-RNA, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS, Reconstituted Complex
NAB2	YGL122C	Nuclear polyadenylated RNA-binding protein	physical	6	6	5	Affinity Capture-MS, PCA, Two-hybrid, Affinity Capture-RNA, Reconstituted Complex, Co-crystal Structure
PAB1	YER165W	Poly(A) binding protein	physical	6	4	4	Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, Affinity Capture-MS
HRP1	YOL123W	Subunit of cleavage factor I	physical	5	3	5	Two-hybrid, Affinity Capture-Western, Two-hybrid, Two-hybrid, Affinity Capture-RNA
PUB1	YNL016W	Poly (A)+ RNA-binding protein	physical	5	3	4	Affinity Capture-Western, Two-hybrid, Two-hybrid, Affinity Capture-Western, Affinity Capture-MS
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	physical	5	2	4	Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-Western, Affinity Capture-MS, Affinity Capture-MS
MEX67	YPL169C	Poly(A)RNA binding protein involved in nuclear mRNA export	genetic	4	4	3	Synthetic Growth Defect, Synthetic Lethality, Dosage Rescue, Negative Genetic
YRA1	YDR381W	Nuclear polyadenylated RNA-binding protein	genetic	4	3	3	Synthetic Growth Defect, Synthetic Growth Defect, Dosage Rescue, Synthetic Rescue
HMT1	YBR034C	Nuclear SAM-dependent mono- and asymmetric methyltransferase	physical	4	2	3	Biochemical Activity, Biochemical Activity, Biochemical Activity, PCA
FKH2	YNL068C	Forkhead family transcription factor	regulation	3	3	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation- exonuclease evidence, ChEC-Seq experiments
FKH1	YIL131C	Forkhead family transcription factor	regulation	3	2	3	chromatin immunoprecipitation-chip evidence, chromatin immunoprecipitation-chip evidence, ChEC-Seq experiments
NUP42	YDR192C	FG-nucleoporin component of central core of the nuclear pore complex	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-MS
STM1	YLR150W	Protein required for optimal translation under nutrient stress	physical	3	2	3	Affinity Capture-MS, Affinity Capture-RNA, Affinity Capture-MS
RPS15	YOL040C	Protein component of the small (40S) ribosomal subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
RPS2	YGL123W	Protein component of the small (40S) subunit	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
POM152	YMR129W	Glycoprotein subunit of transmembrane ring of nuclear pore complex	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
NUP2	YLR335W	Nucleoporin involved in nucleocytoplasmic transport	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
NUP188	YML103C	Subunit of the inner ring of the nuclear pore complex (NPC)	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
NUP60	YAR002W	FG-nucleoporin component of central core of the nuclear pore complex	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
ASC1	YMR116C	G-protein beta subunit and guanine dissociation inhibitor for Gpa2p	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
GLE2	YER107C	RNA export factor associated with the nuclear pore complex (NPC)	physical	3	2	3	Affinity Capture-RNA, Affinity Capture-MS, Affinity Capture-MS
DBP5	YOR046C	Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family	genetic	3	2	3	Synthetic Growth Defect, Synthetic Rescue, Synthetic Rescue
SUB2	YDL084W	Component of the TREX complex required for nuclear mRNA export	physical	3	3	2	Two-hybrid, Affinity Capture-Western, Affinity Capture-RNA
THO2	YNL139C	Subunit of the THO complex	physical	3	3	2	Affinity Capture-Western, Affinity Capture-RNA, Affinity Capture-MS
MTR2	YKL186C	mRNA transport regulator	physical	3	2	2	Affinity Capture-RNA, Affinity Capture-RNA, Affinity Capture-MS
ADH1	YOL086C	Alcohol dehydrogenase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
CDC33	YOL139C	Translation initiation factor eIF4E	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
HPR1	YDR138W	Subunit of THO/TREX complexes	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
KAP95	YLR347C	Karyopherin beta	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
IMD3	YLR432W	Inosine monophosphate dehydrogenase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
CCR4	YAL021C	Component of the CCR4-NOT transcriptional complex	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-Western
NPL3	YDR432W	RNA-binding protein	physical	2	2	2	Two-hybrid, Affinity Capture-RNA
NUP42	YDR192C	FG-nucleoporin component of central core of the nuclear pore complex	genetic	2	2	2	Synthetic Growth Defect, Synthetic Rescue
YCK1	YHR135C	Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform	physical	2	2	2	Biochemical Activity, Affinity Capture-RNA
PSP1	YDR505C	Asn and gln rich protein of unknown function	physical	2	2	2	Two-hybrid, Affinity Capture-RNA
YLR177W	YLR177W	Putative protein of unknown function	physical	2	2	2	Two-hybrid, Affinity Capture-RNA
RPS20	YHL015W	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
TDH3	YGR192C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPL31A	YDL075W	Ribosomal 60S subunit protein L31A	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SIR4	YDR227W	SIR protein involved in assembly of silent chromatin domains	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
PAP2	YOL115W	Non-canonical poly(A) polymerase	physical	2	2	2	Affinity Capture-RNA, Reconstituted Complex
RRP6	YOR001W	Nuclear exosome exonuclease component	physical	2	2	2	Affinity Capture-RNA, Reconstituted Complex
RPS8A	YBL072C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPN13	YLR421C	Subunit of the 19S regulatory particle of the 26S proteasome lid	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPS10B	YMR230W	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPS12	YOR369C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPL25	YOL127W	Ribosomal 60S subunit protein L25	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPL23A	YBL087C	Ribosomal 60S subunit protein L23A	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPN8	YOR261C	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SME1	YOR159C	Core Sm protein Sm E	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPL3	YOR063W	Ribosomal 60S subunit protein L3	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPT6	YGL048C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPS6A	YPL090C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
VMA2	YBR127C	Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SRP1	YNL189W	Karyopherin alpha homolog	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPL17A	YKL180W	Ribosomal 60S subunit protein L17A	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SEC13	YLR208W	Structural component of 3 complexes	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPL2B	YIL018W	Ribosomal 60S subunit protein L2B	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
STO1	YMR125W	Large subunit of the nuclear mRNA cap-binding protein complex	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPT4	YOR259C	ATPase of the 19S regulatory particle of the 26S proteasome	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPS4B	YHR203C	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SMB1	YER029C	Core Sm protein Sm B	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RSE1	YML049C	Protein involved in pre-mRNA splicing	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SMD3	YLR147C	Core Sm protein Sm D3	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
ULP1	YPL020C	Protease that specifically cleaves Smt3p protein conjugates	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPN1	YHR027C	Non-ATPase base subunit of the 19S RP of the 26S proteasome	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
NOT5	YPR072W	Component of the CCR4-NOT core complex, involved in mRNA decapping	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-Western
RRP5	YMR229C	RNA binding protein involved in synthesis of 18S and 5.8S rRNAs	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
PRP22	YER013W	DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SUS1	YBR111W-A	Global transcriptional regulator, component of SAGA, TREX-2 complexes	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPS7A	YOR096W	Protein component of the small (40S) ribosomal subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPT1	YKL145W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SEH1	YGL100W	Subunit of the Nup84 nuclear pore and SEACAT subcomplexes	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SWD2	YKL018W	Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-Western
RPN11	YFR004W	Metalloprotease subunit of 19S regulatory particle	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPN5	YDL147W	Subunit of the CSN and 26S proteasome lid complexes	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPN6	YDL097C	Essential, non-ATPase regulatory subunit of the 26S proteasome lid	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPL21A	YBR191W	Ribosomal 60S subunit protein L21A	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
YEF3	YLR249W	Translation elongation factor 3	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPT2	YDL007W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
SIR3	YLR442C	Silencing protein	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
XRN1	YGL173C	Evolutionarily-conserved 5'-3' exonuclease	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
RPT3	YDR394W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
NUP159	YIL115C	FG-nucleoporin component of central core of the nuclear pore complex	genetic	2	2	2	Synthetic Rescue, Negative Genetic
SBP1	YHL034C	Protein that binds eIF4G and has a role in repression of translation	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
CDC14	YFR028C	Protein phosphatase required for mitotic exit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
FKS1	YLR342W	Catalytic subunit of 1,3-beta-D-glucan synthase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
HHF1	YBR009C	Histone H4	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
CRM1	YGR218W	Nuclear export factor, exportin	genetic	2	2	2	Dosage Growth Defect, Positive Genetic
FBA1	YKL060C	Fructose 1,6-bisphosphate aldolase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
MRPL3	YMR024W	Mitochondrial ribosomal protein of the large subunit	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
LEA1	YPL213W	Component of U2 snRNP complex	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
MLP1	YKR095W	Myosin-like protein associated with the nuclear envelope	genetic	2	2	2	Synthetic Rescue, Negative Genetic
HTB1	YDR224C	Histone H2B	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
HXT7	YDR342C	High-affinity glucose transporter	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
IMD4	YML056C	Inosine monophosphate dehydrogenase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
MSS116	YDR194C	Mitochondrial transcription elongation factor	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
BRF1	YGR246C	TFIIIB B-related factor	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-Western
CDC31	YOR257W	Calcium-binding component of the spindle pole body (SPB) half-bridge	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
ESC1	YMR219W	Protein involved in telomeric silencing	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
ALD6	YPL061W	Cytosolic aldehyde dehydrogenase	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
ATP25	YMR098C	Protein that associates with mitochondrial ribosome	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
CMI7	YIL002W-A	Putative mitochondrial protein of unknown function	physical	2	2	2	Affinity Capture-RNA, Affinity Capture-MS
TIF4632	YGL049C	Translation initiation factor eIF4G and scaffold protein	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
YIL092W	YIL092W	Putative protein of unknown function	physical	2	1	2	Two-hybrid, Two-hybrid
SSD1	YDR293C	Translational repressor	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
NSP1	YJL041W	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP170	YBL079W	Subunit of inner ring of nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP159	YIL115C	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP145	YGL092W	Essential protein with distinct roles in two nuclear pore subcomplexes	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP133	YKR082W	Subunit of Nup84p subcomplex of nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NIC96	YFR002W	Linker nucleoporin component of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP157	YER105C	Subunit of the inner ring of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP192	YJL039C	Essential subunit of inner ring of nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP85	YJR042W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP82	YJL061W	Linker nucleoporin component of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
SAC3	YDR159W	mRNA export factor	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP120	YKL057C	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP1	YOR098C	FG-nucleoporin component of central core of the nuclear pore complex	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
POM34	YLR018C	Subunit of the transmembrane ring of the nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
NUP53	YMR153W	FG-nucleoporin component of central core of nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
PUF3	YLL013C	Protein of the mitochondrial outer surface	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
THP2	YHR167W	Subunit of the THO and TREX complexes	genetic	2	1	2	Negative Genetic, Negative Genetic
LSM7	YNL147W	Lsm (Like Sm) protein	genetic	2	1	2	Negative Genetic, Negative Genetic
HEK2	YBL032W	RNA binding protein involved in asymmetric localization of ASH1 mRNA	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ASM4	YDL088C	FG-nucleoporin component of central core of nuclear pore complex (NPC)	physical	2	1	2	Affinity Capture-MS, Affinity Capture-MS
BFR1	YOR198C	Component of mRNP complexes associated with polyribosomes	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
MPT5	YGL178W	mRNA-binding protein of the PUF family	physical	2	1	2	Affinity Capture-RNA, Affinity Capture-RNA
ACT1	YFL039C	Actin, structural protein in cytoskeleton	genetic	2	2	1	Positive Genetic, Negative Genetic
NPL3	YDR432W	RNA-binding protein	genetic	2	2	1	Phenotypic Suppression, Dosage Rescue
SWD2	YKL018W	Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex	genetic	2	2	1	Dosage Rescue, Phenotypic Suppression
DBP5	YOR046C	Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family	physical	2	2	1	Affinity Capture-Western, PCA
RPO31	YOR116C	RNA polymerase III largest subunit C160	physical	2	1	1	Affinity Capture-Western, Affinity Capture-Western
RPD3	YNL330C	Histone deacetylase, component of both the Rpd3S and Rpd3L complexes	genetic	2	1	1	Dosage Lethality, Dosage Lethality
CCW12	YLR110C	Cell wall mannoprotein	physical	2	1	1	Affinity Capture-RNA, Affinity Capture-RNA
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	regulation	1	1	1	DNA to cDNA expression microarray evidence
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	regulation	1	1	1	chromatin immunoprecipitation-chip evidence
CDC73	YLR418C	Component of the Paf1p complex	physical	1	1	1	Affinity Capture-RNA
CTR9	YOL145C	Component of the Paf1p complex involved in transcription elongation	physical	1	1	1	Affinity Capture-RNA
CEF1	YMR213W	Essential splicing factor	physical	1	1	1	Affinity Capture-MS
CEF1	YMR213W	Essential splicing factor	genetic	1	1	1	Negative Genetic
CLF1	YLR117C	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
CLF1	YLR117C	Member of the NineTeen Complex (NTC)	genetic	1	1	1	Negative Genetic
CWC2	YDL209C	Member of the NineTeen Complex (NTC)	genetic	1	1	1	Negative Genetic
AME1	YBR211C	Essential kinetochore protein associated with microtubules and SPBs	physical	1	1	1	Affinity Capture-RNA
CHL4	YDR254W	Outer kinetochore protein required for chromosome stability	physical	1	1	1	Affinity Capture-RNA
CTF19	YPL018W	Outer kinetochore protein, needed for accurate chromosome segregation	physical	1	1	1	Affinity Capture-RNA
CTF3	YLR381W	Outer kinetochore protein that forms a complex with Mcm16p and Mcm22p	physical	1	1	1	Affinity Capture-RNA
DSN1	YIR010W	Essential component of the outer kinetochore MIND complex	physical	1	1	1	Affinity Capture-MS
AIM25	YJR100C	Mitochondria protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CBF5	YLR175W	Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs	physical	1	1	1	Affinity Capture-MS
CKA1	YIL035C	Alpha catalytic subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
CKA2	YOR061W	Alpha' catalytic subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
CKB2	YOR039W	Beta' regulatory subunit of casein kinase 2 (CK2)	physical	1	1	1	Affinity Capture-RNA
BFR2	YDR299W	Component of the SSU and 90S preribosomes	physical	1	1	1	Affinity Capture-RNA
ENP2	YGR145W	Component of the SSU	physical	1	1	1	Affinity Capture-RNA
GLC7	YER133W	Type 1 S/T protein phosphatase (PP1) catalytic subunit	physical	1	1	1	Affinity Capture-RNA
ARP4	YJL081C	Nuclear actin-related protein involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
ESA1	YOR244W	Catalytic subunit of the histone acetyltransferase complex (NuA4)	physical	1	1	1	Affinity Capture-RNA
EAF1	YDR359C	Component of the NuA4 histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
HSP60	YLR259C	Tetradecameric mitochondrial chaperonin	physical	1	1	1	Affinity Capture-RNA
DBP9	YLR276C	DEAD-box protein required for 27S rRNA processing	physical	1	1	1	Affinity Capture-RNA
MAK16	YAL025C	Essential nuclear protein	physical	1	1	1	Affinity Capture-RNA
IPI1	YHR085W	Component of the Rix1 complex and possibly pre-replicative complexes	physical	1	1	1	Affinity Capture-RNA
IPI1	YHR085W	Component of the Rix1 complex and possibly pre-replicative complexes	genetic	1	1	1	Positive Genetic
GCD6	YDR211W	Catalytic epsilon subunit of the translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-RNA
HOL1	YNR055C	Putative transporter in the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
KAP123	YER110C	Karyopherin beta	physical	1	1	1	Affinity Capture-MS
MIA40	YKL195W	Import and assembly protein in mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
GON7	YJL184W	Component of the EKC/KEOPS protein complex	physical	1	1	1	Affinity Capture-RNA
COR1	YBL045C	Core subunit of the ubiquinol-cytochrome c reductase complex	physical	1	1	1	Affinity Capture-RNA
BRR2	YER172C	RNA-dependent ATPase RNA helicase (DEIH box)	physical	1	1	1	Affinity Capture-MS
KRE29	YER038C	Subunit of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
LTO1	YNL260C	Substrate-specific adaptor protein involved in apo-Rli1p maturation	physical	1	1	1	Affinity Capture-RNA
BRE1	YDL074C	E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
FRT2	YAL028W	Tail-anchored ER membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ARL1	YBR164C	Soluble GTPase with a role in regulation of membrane traffic	physical	1	1	1	Affinity Capture-RNA
DIP2	YLR129W	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
KES1	YPL145C	Sterol/phosphatidylinositol-4-phosphate (PI(4)P) exchanger	genetic	1	1	1	Negative Genetic
LOC1	YFR001W	Nucleolar protein involved in the asymmetric localization of ASH1 mRNA	physical	1	1	1	Affinity Capture-RNA
MRT4	YKL009W	Protein involved in mRNA turnover and ribosome assembly	physical	1	1	1	Affinity Capture-RNA
MRT4	YKL009W	Protein involved in mRNA turnover and ribosome assembly	genetic	1	1	1	Positive Genetic
ARC1	YGL105W	Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases	physical	1	1	1	Affinity Capture-RNA
MES1	YGR264C	Methionyl-tRNA synthetase	genetic	1	1	1	Positive Genetic
GUS1	YGL245W	Glutamyl-tRNA synthetase (GluRS)	physical	1	1	1	Affinity Capture-RNA
KEL3	YPL263C	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
BMH1	YER177W	14-3-3 protein, major isoform	physical	1	1	1	Affinity Capture-RNA
FUN12	YAL035W	Translation initiation factor eIF5B	physical	1	1	1	Affinity Capture-RNA
AIR2	YDL175C	RNA-binding subunit of the TRAMP nuclear RNA surveillance complex	physical	1	1	1	Affinity Capture-RNA
LSM1	YJL124C	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
LSM1	YJL124C	Lsm (Like Sm) protein	genetic	1	1	1	Negative Genetic
LSM3	YLR438C-A	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
LSM6	YDR378C	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
LSM6	YDR378C	Lsm (Like Sm) protein	genetic	1	1	1	Negative Genetic
DED1	YOR204W	ATP-dependent DEAD-box RNA helicase with strand-annealing activity	physical	1	1	1	Affinity Capture-Western
IML1	YJR138W	GTPase-activating protein (GAP) subunit of the Iml1p/SEACIT complex	physical	1	1	1	Affinity Capture-RNA
CDC48	YDL126C	AAA ATPase with protein-unfoldase activity	physical	1	1	1	Affinity Capture-RNA
LRP1	YHR081W	Nuclear exosome-associated nucleic acid binding protein	physical	1	1	1	Affinity Capture-RNA
CBC2	YPL178W	Small subunit of the heterodimeric cap binding complex with Sto1p	genetic	1	1	1	Negative Genetic
MFT1	YML062C	Subunit of the THO complex	physical	1	1	1	Affinity Capture-MS
ARP9	YMR033W	Component of both the SWI/SNF and RSC chromatin remodeling complexes	physical	1	1	1	Affinity Capture-RNA
MED4	YOR174W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MED4	YOR174W	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
HCR1	YLR192C	eIF3j component of translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
GCD1	YOR260W	Gamma subunit of the translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-RNA
ACT1	YFL039C	Actin, structural protein in cytoskeleton	physical	1	1	1	Affinity Capture-RNA
GCD2	YGR083C	Delta subunit of the translation initiation factor eIF2B	physical	1	1	1	Affinity Capture-RNA
CFT2	YLR115W	Subunit of the mRNA cleavage and polyadenlylation factor (CPF)	genetic	1	1	1	Negative Genetic
MPE1	YKL059C	Subunit of CPF cleavage and polyadenylation factor and E3 Ub-ligase	physical	1	1	1	Affinity Capture-RNA
IMD2	YHR216W	Inosine monophosphate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
GIR2	YDR152W	Highly-acidic RWD domain-containing cytoplasmic protein	physical	1	1	1	Affinity Capture-RNA
AAR2	YBL074C	Component of the U5 snRNP complex	genetic	1	1	1	Negative Genetic
YCK2	YNL154C	Palmitoylated plasma membrane-bound casein kinase I (CK1) isoform	physical	1	1	1	Biochemical Activity
PBP2	YBR233W	RNA binding protein	physical	1	1	1	Two-hybrid
SUB2	YDL084W	Component of the TREX complex required for nuclear mRNA export	genetic	1	1	1	Dosage Growth Defect
PAB1	YER165W	Poly(A) binding protein	genetic	1	1	1	Dosage Rescue
RAD9	YDR217C	DNA damage-dependent checkpoint protein	physical	1	1	1	Affinity Capture-RNA
RAD9	YDR217C	DNA damage-dependent checkpoint protein	genetic	1	1	1	Phenotypic Enhancement
PRD1	YCL057W	Zinc metalloendopeptidase	physical	1	1	1	Affinity Capture-RNA
PPH22	YDL188C	Catalytic subunit of protein phosphatase 2A, PP2A	physical	1	1	1	Affinity Capture-RNA
URA1	YKL216W	Dihydroorotate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
PWP2	YCR057C	Conserved 90S pre-ribosomal component	physical	1	1	1	Affinity Capture-RNA
TEM1	YML064C	GTPase involved in initiation of Mitotic Exit Network (MEN)	physical	1	1	1	Affinity Capture-RNA
RPL29	YFR032C-A	Ribosomal 60S subunit protein L29	physical	1	1	1	Affinity Capture-RNA
YPL225W	YPL225W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NDE2	YDL085W	Mitochondrial external NADH dehydrogenase	physical	1	1	1	Affinity Capture-RNA
TEF1	YPR080W	Translational elongation factor EF-1 alpha	physical	1	1	1	Affinity Capture-RNA
RPS21B	YJL136C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS30A	YLR287C-A	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS30A	YLR287C-A	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
THO1	YER063W	Conserved nuclear RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
RPS14A	YCR031C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SCS2	YER120W	Integral ER membrane protein, regulates phospholipid metabolism	physical	1	1	1	Affinity Capture-RNA
SUI1	YNL244C	Translation initiation factor eIF1	physical	1	1	1	Affinity Capture-RNA
YHR138C	YHR138C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YRO2	YBR054W	Protein with a putative role in response to acid stress	physical	1	1	1	Affinity Capture-RNA
YSA1	YBR111C	Nudix hydrolase family member with ADP-ribose pyrophosphatase activity	physical	1	1	1	Affinity Capture-RNA
SDH8	YBR269C	Protein required for assembly of succinate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
RUB1	YDR139C	Ubiquitin-like protein with similarity to mammalian NEDD8	physical	1	1	1	Affinity Capture-RNA
YGR201C	YGR201C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPS25A	YGR027C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS24A	YER074W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
PEX34	YCL056C	Protein that regulates peroxisome populations	physical	1	1	1	Affinity Capture-RNA
TMA22	YJR014W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YET2	YMR040W	Protein of unknown function that may interact with ribosomes	physical	1	1	1	Affinity Capture-RNA
VMA6	YLR447C	Subunit d of the V0 integral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-RNA
YNK1	YKL067W	Nucleoside diphosphate kinase	physical	1	1	1	Affinity Capture-RNA
TRX2	YGR209C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Affinity Capture-RNA
STF2	YGR008C	Protein involved in resistance to desiccation stress	physical	1	1	1	Affinity Capture-RNA
SBH2	YER019C-A	Ssh1p-Sss1p-Sbh2p complex component	physical	1	1	1	Affinity Capture-RNA
YNL134C	YNL134C	NADH-dependent aldehyde reductase	physical	1	1	1	Affinity Capture-RNA
YLR361C-A	YLR361C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TOM7	YNL070W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
QCR6	YFR033C	Subunit 6 of the ubiquinol cytochrome-c reductase complex	physical	1	1	1	Affinity Capture-RNA
RPL9A	YGL147C	Ribosomal 60S subunit protein L9A	physical	1	1	1	Affinity Capture-RNA
RPS26A	YGL189C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
THI20	YOL055C	Trifunctional enzyme of thiamine biosynthesis, degradation and salvage	physical	1	1	1	Affinity Capture-RNA
SSS1	YDR086C	Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p)	physical	1	1	1	Affinity Capture-RNA
SSS1	YDR086C	Subunit of the Sec61p translocation complex (Sec61p-Sss1p-Sbh1p)	genetic	1	1	1	Negative Genetic
SPB4	YFL002C	Putative ATP-dependent RNA helicase	physical	1	1	1	Affinity Capture-RNA
OCA1	YNL099C	Putative protein tyrosine phosphatase	physical	1	1	1	Affinity Capture-RNA
YCR023C	YCR023C	Vacuolar membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPL11A	YPR102C	Ribosomal 60S subunit protein L11A	physical	1	1	1	Affinity Capture-RNA
VMA4	YOR332W	Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase)	physical	1	1	1	Affinity Capture-RNA
SDH6	YDR379C-A	Mitochondrial protein involved in assembly of succinate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
REF2	YDR195W	RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
RPS17A	YML024W	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	1	1	1	Affinity Capture-RNA
TDA1	YMR291W	Protein kinase of unknown cellular role	physical	1	1	1	Affinity Capture-RNA
SPC3	YLR066W	Subunit of signal peptidase complex	physical	1	1	1	Affinity Capture-RNA
SOD1	YJR104C	Cytosolic copper-zinc superoxide dismutase	physical	1	1	1	Affinity Capture-RNA
NNR2	YKL151C	Widely-conserved NADHX dehydratase	physical	1	1	1	Affinity Capture-RNA
YPR170W-B	YPR170W-B	Putative, non-essential component vacuolar ATPase	physical	1	1	1	Affinity Capture-RNA
QRI5	YLR204W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
PFD1	YJL179W	Subunit of heterohexameric prefoldin	physical	1	1	1	Affinity Capture-RNA
YDR365W-A	YDR365W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-RNA
VMA9	YCL005W-A	Vacuolar H+ ATPase subunit e of the V-ATPase V0 subcomplex	physical	1	1	1	Affinity Capture-RNA
SPG1	YGR236C	Protein required for high temperature survival during stationary phase	physical	1	1	1	Affinity Capture-RNA
SKA1	YKL023W	SKI complex-associated protein	physical	1	1	1	Affinity Capture-RNA
SNC2	YOR327C	Vesicle membrane receptor protein (v-SNARE)	physical	1	1	1	Affinity Capture-RNA
STF1	YDL130W-A	Protein involved in regulation of the mitochondrial F1F0-ATP synthase	physical	1	1	1	Affinity Capture-RNA
NHP6A	YPR052C	High-mobility group (HMG) protein	physical	1	1	1	Affinity Capture-RNA
YMR090W	YMR090W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPS28A	YOR167C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
REE1	YJL217W	Cytoplasmic protein involved in the regulation of enolase (ENO1)	physical	1	1	1	Affinity Capture-RNA
TPI1	YDR050C	Triose phosphate isomerase, abundant glycolytic enzyme	physical	1	1	1	Affinity Capture-RNA
TMA7	YLR262C-A	Protein of unknown function that associates with ribosomes	physical	1	1	1	Affinity Capture-RNA
RTC3	YHR087W	Protein of unknown function involved in RNA metabolism	physical	1	1	1	Affinity Capture-RNA
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	physical	1	1	1	Affinity Capture-RNA
SSE1	YPL106C	ATPase component of heat shock protein Hsp90 chaperone complex	genetic	1	1	1	Negative Genetic
SDD2	YMR074C	Protein with homology to human PDCD5	physical	1	1	1	Affinity Capture-RNA
RSM27	YGR215W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
RIB4	YOL143C	Lumazine synthase (DMRL synthase)	physical	1	1	1	Affinity Capture-RNA
RRG9	YNL213C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
UIP3	YAR027W	Putative integral membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VMA11	YPL234C	Vacuolar ATPase V0 domain subunit c'	physical	1	1	1	Affinity Capture-RNA
TSC3	YBR058C-A	Protein that stimulates the activity of serine palmitoyltransferase	physical	1	1	1	Affinity Capture-RNA
RPS21A	YKR057W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPB4	YJL140W	RNA polymerase II subunit B32	physical	1	1	1	Affinity Capture-RNA
SMT3	YDR510W	Ubiquitin-like protein of the SUMO family	physical	1	1	1	Affinity Capture-RNA
TOM22	YNL131W	Component of the TOM (Translocase of Outer Membrane) complex	physical	1	1	1	Affinity Capture-RNA
NHP6B	YBR089C-A	High-mobility group (HMG) protein	physical	1	1	1	Affinity Capture-RNA
VPS68	YOL129W	Vacuolar membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VTC1	YER072W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Affinity Capture-RNA
SPG4	YMR107W	Protein required for high temperature survival during stationary phase	physical	1	1	1	Affinity Capture-RNA
SBA1	YKL117W	Co-chaperone that binds and regulates Hsp90 family chaperones	physical	1	1	1	Affinity Capture-RNA
UBI4	YLL039C	Ubiquitin	physical	1	1	1	Affinity Capture-RNA
YDR316W-B	YDR316W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-RNA
SNC1	YAL030W	Vesicle membrane receptor protein (v-SNARE)	physical	1	1	1	Affinity Capture-RNA
SHR3	YDL212W	Endoplasmic reticulum packaging chaperone	physical	1	1	1	Affinity Capture-RNA
RFS1	YBR052C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TMA17	YDL110C	Regulatory gamma subunit of fatty acid synthase (FAS)	physical	1	1	1	Affinity Capture-RNA
RGI1	YER067W	Protein involved in energy metabolism under respiratory conditions	physical	1	1	1	Affinity Capture-RNA
RPL19B	YBL027W	Ribosomal 60S subunit protein L19B	physical	1	1	1	Affinity Capture-RNA
RPL30	YGL030W	Ribosomal 60S subunit protein L30	physical	1	1	1	Affinity Capture-RNA
RPP2A	YOL039W	Ribosomal protein P2 alpha	physical	1	1	1	Affinity Capture-RNA
UMP1	YBR173C	Chaperone required for correct maturation of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
OST5	YGL226C-A	Zeta subunit of the oligosaccharyltransferase complex of the ER lumen	physical	1	1	1	Affinity Capture-RNA
UGA1	YGR019W	Gamma-aminobutyrate (GABA) transaminase	physical	1	1	1	Affinity Capture-RNA
RPL24B	YGR148C	Ribosomal 60S subunit protein L24B	physical	1	1	1	Affinity Capture-RNA
SIP18	YMR175W	Phospholipid-binding hydrophilin	physical	1	1	1	Affinity Capture-RNA
YOL038C-A	YOL038C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RVS167	YDR388W	Calmodulin-binding actin-associated protein	physical	1	1	1	Affinity Capture-RNA
YNL208W	YNL208W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YBR285W	YBR285W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPL42B	YHR141C	Ribosomal 60S subunit protein L42B	physical	1	1	1	Affinity Capture-RNA
YPR145C-A	YPR145C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TPM1	YNL079C	Major isoform of tropomyosin	physical	1	1	1	Affinity Capture-RNA
YLR257W	YLR257W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YDL124W	YDL124W	NADPH-dependent alpha-keto amide reductase	physical	1	1	1	Affinity Capture-RNA
YPR015C	YPR015C	Putative zinc finger transcription factor	physical	1	1	1	Affinity Capture-RNA
NDL1	YLR254C	Homolog of nuclear distribution factor NudE	physical	1	1	1	Affinity Capture-RNA
VMA10	YHR039C-A	Subunit G of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-RNA
RCI37	YIL077C	Protein that associates with the large mitoribosomal subunit	physical	1	1	1	Affinity Capture-RNA
PEX27	YOR193W	Peripheral peroxisomal membrane protein	physical	1	1	1	Affinity Capture-RNA
RPL12B	YDR418W	Ribosomal 60S subunit protein L12B	physical	1	1	1	Affinity Capture-RNA
SPI1	YER150W	GPI-anchored cell wall protein involved in weak acid resistance	physical	1	1	1	Affinity Capture-RNA
RXT3	YDL076C	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
RPS3	YNL178W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPL34A	YER056C-A	Ribosomal 60S subunit protein L34A	physical	1	1	1	Affinity Capture-RNA
TIF11	YMR260C	Translation initiation factor eIF1A	physical	1	1	1	Affinity Capture-RNA
TMH11	YJR085C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TDH1	YJL052W	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1	physical	1	1	1	Affinity Capture-RNA
VMA21	YGR105W	Integral membrane protein required for V-ATPase function	physical	1	1	1	Affinity Capture-RNA
TOM5	YPR133W-A	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
RPL43B	YJR094W-A	Ribosomal 60S subunit protein L43B	physical	1	1	1	Affinity Capture-RNA
TOP1	YOL006C	Topoisomerase I	physical	1	1	1	Affinity Capture-RNA
YMR196W	YMR196W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NTC20	YBR188C	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
RDL2	YOR286W	Protein with rhodanese activity	physical	1	1	1	Affinity Capture-RNA
RPS10A	YOR293W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RIM1	YCR028C-A	ssDNA-binding protein essential for mitochondrial genome maintenance	physical	1	1	1	Affinity Capture-RNA
PRE7	YBL041W	Beta 6 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
YOR385W	YOR385W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YIL060W	YIL060W	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPL36B	YPL249C-A	Ribosomal 60S subunit protein L36B	physical	1	1	1	Affinity Capture-RNA
YBR016W	YBR016W	Tail-anchored plasma membrane protein with a conserved CYSTM module	physical	1	1	1	Affinity Capture-RNA
TRX3	YCR083W	Mitochondrial thioredoxin	physical	1	1	1	Affinity Capture-RNA
RMD5	YDR255C	Component of GID Complex that confers ubiquitin ligase (U3) activity	physical	1	1	1	Affinity Capture-RNA
RPL24A	YGL031C	Ribosomal 60S subunit protein L24A	physical	1	1	1	Affinity Capture-RNA
VMA7	YGR020C	Subunit F of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-RNA
RPL19A	YBR084C-A	Ribosomal 60S subunit protein L19A	physical	1	1	1	Affinity Capture-RNA
SND3	YBR106W	Involved in SRP-independent protein targeting to the ER	physical	1	1	1	Affinity Capture-RNA
OST4	YDL232W	Subunit of the oligosaccharyltransferase complex of the ER lumen	physical	1	1	1	Affinity Capture-RNA
RPL37B	YDR500C	Ribosomal 60S subunit protein L37B	physical	1	1	1	Affinity Capture-RNA
RPS23B	YPR132W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YOP1	YPR028W	Reticulon-interacting protein	physical	1	1	1	Affinity Capture-RNA
RPL34B	YIL052C	Ribosomal 60S subunit protein L34B	physical	1	1	1	Affinity Capture-RNA
TVP18	YMR071C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
SEC11	YIR022W	18kDa catalytic subunit of the Signal Peptidase Complex (SPC)	physical	1	1	1	Affinity Capture-RNA
RPL26B	YGR034W	Ribosomal 60S subunit protein L26B	physical	1	1	1	Affinity Capture-RNA
RPL13B	YMR142C	Ribosomal 60S subunit protein L13B	physical	1	1	1	Affinity Capture-RNA
RPL28	YGL103W	Ribosomal 60S subunit protein L28	physical	1	1	1	Affinity Capture-RNA
OSH7	YHR001W	Oxysterol-binding phosphatidylserine transferase	physical	1	1	1	Affinity Capture-RNA
RPS30B	YOR182C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YET1	YKL065C	Endoplasmic reticulum transmembrane protein	physical	1	1	1	Affinity Capture-RNA
PAL2	YHR097C	Protein involved in clathrin-mediated endocytosis	physical	1	1	1	Affinity Capture-RNA
ROQ1	YJL144W	Ub-ligase substrate-specificity factor	physical	1	1	1	Affinity Capture-RNA
YPL071C	YPL071C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SNF3	YDL194W	Plasma membrane low glucose sensor, regulates glucose transport	physical	1	1	1	Affinity Capture-RNA
QCR8	YJL166W	Subunit 8 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Affinity Capture-RNA
UIP4	YPL186C	Protein that interacts with Ulp1p	physical	1	1	1	Affinity Capture-RNA
NAT3	YPR131C	Catalytic subunit of the NatB N-terminal acetyltransferase	physical	1	1	1	Affinity Capture-RNA
STE18	YJR086W	G protein gamma subunit	physical	1	1	1	Affinity Capture-RNA
PET117	YER058W	Assembly factor that couples heme a synthesis to complex IV assembly	physical	1	1	1	Affinity Capture-RNA
PRX1	YBL064C	Mitochondrial peroxiredoxin with thioredoxin peroxidase activity	physical	1	1	1	Affinity Capture-RNA
RPC19	YNL113W	RNA polymerase subunit AC19	physical	1	1	1	Affinity Capture-RNA
UBC7	YMR022W	Ubiquitin conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
PRE9	YGR135W	Alpha 3 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
YGR161W-B	YGR161W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-RNA
RCF1	YML030W	Cytochrome c oxidase subunit	physical	1	1	1	Affinity Capture-RNA
ZDS1	YMR273C	Protein with a role in regulating Swe1p-dependent polarized growth	physical	1	1	1	Affinity Capture-RNA
YOS1	YER074W-A	Integral membrane protein required for ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
SKP1	YDR328C	Evolutionarily conserved kinetochore protein	physical	1	1	1	Affinity Capture-RNA
PET191	YJR034W	Protein required for assembly of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
YJR096W	YJR096W	Xylose and arabinose reductase	physical	1	1	1	Affinity Capture-RNA
RPL38	YLR325C	Ribosomal 60S subunit protein L38	physical	1	1	1	Affinity Capture-RNA
SIS1	YNL007C	Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p	physical	1	1	1	Affinity Capture-RNA
NTF2	YER009W	Nuclear envelope protein	physical	1	1	1	Affinity Capture-RNA
PHO92	YDR374C	Posttranscriptional regulator of phosphate and glucose metabolism	physical	1	1	1	Affinity Capture-RNA
PDX3	YBR035C	Pyridoxine (pyridoxamine) phosphate oxidase	physical	1	1	1	Affinity Capture-RNA
SLK19	YOR195W	Kinetochore-associated protein	physical	1	1	1	Affinity Capture-RNA
RPS16A	YMR143W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TMA10	YLR327C	Protein of unknown function that associates with ribosomes	physical	1	1	1	Affinity Capture-RNA
TMC1	YOR052C	AN1-type zinc finger protein, effector of proteotoxic stress response	physical	1	1	1	Affinity Capture-RNA
TFS1	YLR178C	Inhibitor of carboxypeptidase Y (Prc1p), and Ras GAP (Ira2p)	physical	1	1	1	Affinity Capture-RNA
OLE1	YGL055W	Delta(9) fatty acid desaturase	physical	1	1	1	Affinity Capture-RNA
OMA1	YKR087C	Metalloendopeptidase of the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
RPL23B	YER117W	Ribosomal 60S subunit protein L23B	physical	1	1	1	Affinity Capture-RNA
OM14	YBR230C	Mitochondrial outer membrane receptor for cytosolic ribosomes	physical	1	1	1	Affinity Capture-RNA
YDR034C-A	YDR034C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YMR114C	YMR114C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NFU1	YKL040C	Protein involved in Fe-S cluster transfer to mitochondrial clients	physical	1	1	1	Affinity Capture-RNA
NOP10	YHR072W-A	Subunit of box H/ACA snoRNP complex	physical	1	1	1	Affinity Capture-RNA
TGL2	YDR058C	Triacylglycerol lipase that is localized to the mitochondria	physical	1	1	1	Affinity Capture-RNA
RPL35A	YDL191W	Ribosomal 60S subunit protein L35A	physical	1	1	1	Affinity Capture-RNA
RPL35A	YDL191W	Ribosomal 60S subunit protein L35A	genetic	1	1	1	Negative Genetic
PBP4	YDL053C	Pbp1p binding protein	physical	1	1	1	Affinity Capture-RNA
SAP30	YMR263W	Component of Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
SSC1	YJR045C	Hsp70 family ATPase	physical	1	1	1	Affinity Capture-RNA
YKL063C	YKL063C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
UPS1	YLR193C	Phosphatidic acid transfer protein	physical	1	1	1	Affinity Capture-RNA
PAA1	YDR071C	Polyamine acetyltransferase	physical	1	1	1	Affinity Capture-RNA
SOL4	YGR248W	6-phosphogluconolactonase	physical	1	1	1	Affinity Capture-RNA
VPS51	YKR020W	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-RNA
YDR524C-B	YDR524C-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPS17B	YDR447C	Ribosomal protein 51 (rp51) of the small (40s) subunit	physical	1	1	1	Affinity Capture-RNA
YOR296W	YOR296W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RAS2	YNL098C	GTP-binding protein	physical	1	1	1	Affinity Capture-RNA
VTI1	YMR197C	Protein involved in cis-Golgi membrane traffic	physical	1	1	1	Affinity Capture-RNA
RSM19	YNR037C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
YDR391C	YDR391C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PAI3	YMR174C	Cytoplasmic proteinase A (Pep4p) inhibitor	physical	1	1	1	Affinity Capture-RNA
YPT6	YLR262C	Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
YPT6	YLR262C	Rab family GTPase	genetic	1	1	1	Negative Genetic
TAH11	YJR046W	DNA replication licensing factor	physical	1	1	1	Affinity Capture-RNA
YPT53	YNL093W	Stress-induced Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
PET100	YDR079W	Chaperone that facilitates the assembly of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
NCW1	YMR122W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TIM10	YHR005C-A	Essential protein of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
URA6	YKL024C	Uridylate kinase	physical	1	1	1	Affinity Capture-RNA
PET130	YJL023C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
UGA2	YBR006W	Succinate semialdehyde dehydrogenase	physical	1	1	1	Affinity Capture-RNA
YPR063C	YPR063C	ER-localized protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YOR289W	YOR289W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PEX29	YDR479C	ER-resident protein involved in peroxisomal biogenesis	physical	1	1	1	Affinity Capture-RNA
VOA1	YGR106C	ER protein that functions in assembly of the V0 sector of V-ATPase	physical	1	1	1	Affinity Capture-RNA
PBI2	YNL015W	Cytosolic inhibitor of vacuolar proteinase B (PRB1)	physical	1	1	1	Affinity Capture-RNA
YMR31	YFR049W	Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
UBC4	YBR082C	Ubiquitin-conjugating enzyme (E2)	physical	1	1	1	Affinity Capture-RNA
VPS64	YDR200C	Protein required for cytoplasm to vacuole targeting of proteins	physical	1	1	1	Affinity Capture-RNA
OXR1	YPL196W	Protein involved in regulation of vacuolar V-ATPase	physical	1	1	1	Affinity Capture-RNA
RPP2B	YDR382W	Ribosomal protein P2 beta	physical	1	1	1	Affinity Capture-RNA
REV7	YIL139C	Accessory subunit of DNA polymerase zeta	physical	1	1	1	Affinity Capture-RNA
UGX2	YDL169C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPS23A	YGR118W	Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YGR027W-B	YGR027W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-RNA
SRY1	YKL218C	3-hydroxyaspartate dehydratase	physical	1	1	1	Affinity Capture-RNA
TIM12	YBR091C	Essential protein of the inner mitochondrial membrane	physical	1	1	1	Affinity Capture-RNA
SLM4	YBR077C	Subunit of the EGO/GSE complex	physical	1	1	1	Affinity Capture-RNA
VMA22	YHR060W	Protein that is required for vacuolar H+-ATPase (V-ATPase) function	physical	1	1	1	Affinity Capture-RNA
YOR342C	YOR342C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PFK26	YIL107C	6-phosphofructo-2-kinase	physical	1	1	1	Affinity Capture-RNA
PFY1	YOR122C	Profilin	physical	1	1	1	Affinity Capture-RNA
SMC2	YFR031C	Subunit of the condensin complex	physical	1	1	1	Affinity Capture-RNA
SEM1	YDR363W-A	19S proteasome regulatory particle lid subcomplex component	physical	1	1	1	Affinity Capture-RNA
SEM1	YDR363W-A	19S proteasome regulatory particle lid subcomplex component	genetic	1	1	1	Negative Genetic
PTC7	YHR076W	Type 2C serine/threonine protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-RNA
RPL26A	YLR344W	Ribosomal 60S subunit protein L26A	physical	1	1	1	Affinity Capture-RNA
SPO20	YMR017W	Meiosis-specific subunit of the t-SNARE complex	physical	1	1	1	Affinity Capture-RNA
NAB6	YML117W	Putative RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
UBC8	YEL012W	Ubiquitin-conjugating enzyme that regulates gluconeogenesis	physical	1	1	1	Affinity Capture-RNA
SRP101	YDR292C	Signal recognition particle (SRP) receptor alpha subunit	physical	1	1	1	Affinity Capture-RNA
NHP10	YDL002C	Non-essential INO80 chromatin remodeling complex subunit	physical	1	1	1	Affinity Capture-RNA
SYT1	YPR095C	Guanine nucleotide exchange factor (GEF) for Arf proteins	physical	1	1	1	Affinity Capture-RNA
NAS6	YGR232W	Evolutionarily conserved 19S regulatory particle assembly-chaperone	physical	1	1	1	Affinity Capture-RNA
RPS11B	YBR048W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TRS23	YDR246W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
TRS23	YDR246W	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Negative Genetic
TIF35	YDR429C	eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
PNT1	YOR266W	Mitochondrial integral inner membrane protein	physical	1	1	1	Affinity Capture-RNA
RPL7A	YGL076C	Ribosomal 60S subunit protein L7A	physical	1	1	1	Affinity Capture-RNA
YNG1	YOR064C	Subunit of the NuA3 histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
WTM1	YOR230W	Transcriptional modulator	physical	1	1	1	Affinity Capture-RNA
RAV2	YDR202C	Subunit of RAVE complex (Rav1p, Rav2p, Skp1p)	physical	1	1	1	Affinity Capture-RNA
RAD61	YDR014W	Subunit of a complex that inhibits sister chromatid cohesion	physical	1	1	1	Affinity Capture-RNA
PRE8	YML092C	Alpha 2 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
NAM9	YNL137C	Mitochondrial ribosomal component of the small subunit	physical	1	1	1	Affinity Capture-RNA
RPL41B	YDL133C-A	Ribosomal 60S subunit protein L41B	physical	1	1	1	Affinity Capture-RNA
YNG2	YHR090C	Subunit of NuA4, an essential histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
UTP20	YBL004W	Component of the small-subunit (SSU) processome	physical	1	1	1	Affinity Capture-RNA
YBL029W	YBL029W	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPS19A	YOL121C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SEN15	YMR059W	Subunit of the tRNA splicing endonuclease	physical	1	1	1	Affinity Capture-RNA
RAD14	YMR201C	Subunit of Nucleotide Excision Repair Factor 1 (NEF1)	physical	1	1	1	Affinity Capture-RNA
SRP68	YPL243W	Core component of the signal recognition particle (SRP) complex	physical	1	1	1	Affinity Capture-RNA
RFA3	YJL173C	Subunit of heterotrimeric Replication Protein A (RPA)	physical	1	1	1	Affinity Capture-RNA
YPR027C	YPR027C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PRM4	YPL156C	Pheromone-regulated protein proposed to be involved in mating	physical	1	1	1	Affinity Capture-RNA
RNR2	YJL026W	Ribonucleotide-diphosphate reductase (RNR), small subunit	physical	1	1	1	Affinity Capture-RNA
TAF14	YPL129W	Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes	physical	1	1	1	Affinity Capture-RNA
YGR079W	YGR079W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YMR046C	YMR046C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-RNA
TMH18	YPR098C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RRD2	YPL152W	Peptidyl-prolyl cis/trans-isomerase	physical	1	1	1	Affinity Capture-RNA
SNX4	YJL036W	Sorting nexin	physical	1	1	1	Affinity Capture-RNA
SPT4	YGR063C	Spt4p/5p (DSIF) transcription elongation factor complex subunit	physical	1	1	1	Affinity Capture-RNA
SPT4	YGR063C	Spt4p/5p (DSIF) transcription elongation factor complex subunit	genetic	1	1	1	Synthetic Lethality
SCL1	YGL011C	Alpha 1 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
TRX1	YLR043C	Cytoplasmic thioredoxin isoenzyme	physical	1	1	1	Affinity Capture-RNA
RPP1A	YDL081C	Ribosomal stalk protein P1 alpha	physical	1	1	1	Affinity Capture-RNA
YER121W	YER121W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
REG2	YBR050C	Regulatory subunit of the Glc7p type-1 protein phosphatase	physical	1	1	1	Affinity Capture-RNA
RPL27A	YHR010W	Ribosomal 60S subunit protein L27A	physical	1	1	1	Affinity Capture-RNA
PST2	YDR032C	FMN-dependent NAD(P)H:quinone oxidoreductase	physical	1	1	1	Affinity Capture-RNA
TRR2	YHR106W	Mitochondrial thioredoxin reductase	physical	1	1	1	Affinity Capture-RNA
PMC1	YGL006W	Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions	physical	1	1	1	Affinity Capture-RNA
RPS19B	YNL302C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TSA2	YDR453C	Stress inducible cytoplasmic thioredoxin peroxidase	physical	1	1	1	Affinity Capture-RNA
SPC2	YML055W	Subunit of signal peptidase complex	physical	1	1	1	Affinity Capture-RNA
RPS6B	YBR181C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YGL082W	YGL082W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RSM28	YDR494W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
SHP1	YBL058W	UBX domain-containing substrate adaptor for Cdc48p	physical	1	1	1	Affinity Capture-RNA
RPA190	YOR341W	RNA polymerase I largest subunit A190	physical	1	1	1	Affinity Capture-RNA
RPA190	YOR341W	RNA polymerase I largest subunit A190	genetic	1	1	1	Negative Genetic
YGR283C	YGR283C	Putative methyltransferase	physical	1	1	1	Affinity Capture-RNA
POA1	YBR022W	Phosphatase that is highly specific for ADP-ribose 1''-phosphate	physical	1	1	1	Affinity Capture-RNA
PUF6	YDR496C	Pumilio-homology domain protein	physical	1	1	1	Affinity Capture-RNA
TIM11	YDR322C-A	Subunit e of mitochondrial F1F0-ATPase	physical	1	1	1	Affinity Capture-RNA
PHB2	YGR231C	Subunit of the prohibitin complex (Phb1p-Phb2p)	physical	1	1	1	Affinity Capture-RNA
YDR034W-B	YDR034W-B	Predicted tail-anchored plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
YAE1	YJR067C	Substrate-specific adaptor protein involved in apo-Rli1p maturation	physical	1	1	1	Affinity Capture-RNA
YAR1	YPL239W	Nucleocytoplasmic shuttling assembly chaperone	physical	1	1	1	Affinity Capture-RNA
YNL058C	YNL058C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YRB2	YIL063C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNL194C	YNL194C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
PRE3	YJL001W	Beta 1 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
YKR070W	YKR070W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
OM45	YIL136W	Mitochondrial outer membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
STE4	YOR212W	G protein beta subunit	physical	1	1	1	Affinity Capture-RNA
YDC1	YPL087W	Alkaline dihydroceramidase, involved in sphingolipid metabolism	physical	1	1	1	Affinity Capture-RNA
RPL8B	YLL045C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Affinity Capture-RNA
PEX4	YGR133W	Peroxisomal ubiquitin conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
SOA1	YIL166C	Sulfonate and inorganic sulfur transporter	physical	1	1	1	Affinity Capture-RNA
NCE102	YPR149W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RCN2	YOR220W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NTR2	YKR022C	Essential protein that forms a dimer with Ntr1p	physical	1	1	1	Affinity Capture-RNA
SPL2	YHR136C	Protein with similarity to cyclin-dependent kinase inhibitors	physical	1	1	1	Affinity Capture-RNA
YDR003W-A	YDR003W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPR172W	YPR172W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YJL113W	YJL113W	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-RNA
RPS7B	YNL096C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
YKE2	YLR200W	Subunit of the heterohexameric Gim/prefoldin protein complex	physical	1	1	1	Affinity Capture-RNA
YMR253C	YMR253C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPT1	YFL038C	Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
VPS55	YJR044C	Late endosomal protein involved in late endosome to vacuole transport	physical	1	1	1	Affinity Capture-RNA
PNP1	YLR209C	Purine nucleoside phosphorylase	physical	1	1	1	Affinity Capture-RNA
PPN1	YDR452W	Dual endo- and exopolyphosphatase with a role in phosphate metabolism	physical	1	1	1	Affinity Capture-RNA
SSP120	YLR250W	Protein packaged into COPII vesicles for ER to Golgi trafficking	physical	1	1	1	Affinity Capture-RNA
SGV1	YPR161C	Cyclin (Bur2p)-dependent protein kinase	physical	1	1	1	Affinity Capture-RNA
SGV1	YPR161C	Cyclin (Bur2p)-dependent protein kinase	genetic	1	1	1	Negative Genetic
RAD5	YLR032W	DNA helicase/Ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
YGR210C	YGR210C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SDH5	YOL071W	Protein required for flavinylation of Sdh1p	physical	1	1	1	Affinity Capture-RNA
RKM1	YPL208W	SET-domain lysine-N-methyltransferase	physical	1	1	1	Affinity Capture-RNA
YGK3	YOL128C	Protein kinase related to mammalian GSK-3 glycogen synthase kinases	physical	1	1	1	Affinity Capture-RNA
WIP1	YDR374W-A	Kinetochore localized protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YGL117W	YGL117W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NUR1	YDL089W	Protein involved in regulation of mitotic exit	physical	1	1	1	Affinity Capture-RNA
YDL157C	YDL157C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ZUO1	YGR285C	Ribosome-associated chaperone	physical	1	1	1	Affinity Capture-RNA
PRE5	YMR314W	Alpha 6 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
YAP1801	YHR161C	Protein of the AP180 family, involved in clathrin cage assembly	physical	1	1	1	Affinity Capture-RNA
TSR4	YOL022C	Cytoplasmic assembly chaperone for ribosomal protein Rps2p	physical	1	1	1	Affinity Capture-RNA
TFB5	YDR079C-A	Component of RNA polymerase II general transcription factor TFIIH	physical	1	1	1	Affinity Capture-RNA
SAS4	YDR181C	Subunit of the SAS complex (Sas2p, Sas4p, Sas5p)	physical	1	1	1	Affinity Capture-RNA
NAT2	YGR147C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NUD1	YOR373W	Mitotic exit network (MEN) scaffold protein	physical	1	1	1	Affinity Capture-RNA
YGL114W	YGL114W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ULA1	YPL003W	Protein that activates Rub1p (NEDD8) before neddylation	physical	1	1	1	Affinity Capture-RNA
PML1	YLR016C	Subunit of the RES complex	physical	1	1	1	Affinity Capture-RNA
PGK1	YCR012W	3-phosphoglycerate kinase	physical	1	1	1	Affinity Capture-RNA
TRM10	YOL093W	tRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
YJR142W	YJR142W	8-oxo-dGTP diphosphatase of the Nudix hydrolase family	physical	1	1	1	Affinity Capture-RNA
RTN2	YDL204W	Reticulon protein	physical	1	1	1	Affinity Capture-RNA
SDH4	YDR178W	Membrane anchor subunit of succinate dehydrogenase (SDH)	physical	1	1	1	Affinity Capture-RNA
YOR292C	YOR292C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SCO1	YBR037C	Copper-binding protein of mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
YAF9	YNL107W	Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes	physical	1	1	1	Affinity Capture-RNA
VFA1	YER128W	Protein that interacts with Vps4p and has a role in vacuolar sorting	physical	1	1	1	Affinity Capture-RNA
RIM13	YMR154C	Calpain-like cysteine protease	physical	1	1	1	Affinity Capture-RNA
RSM26	YJR101W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
YJR084W	YJR084W	Protein that forms a complex with Thp3p	physical	1	1	1	Affinity Capture-RNA
YOL103W-A	YOL103W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-RNA
YSR3	YKR053C	Dihydrosphingosine 1-phosphate phosphatase	physical	1	1	1	Affinity Capture-RNA
SRO77	YBL106C	Protein with roles in exocytosis and cation homeostasis	physical	1	1	1	Affinity Capture-RNA
PIC2	YER053C	Mitochondrial copper and phosphate carrier	physical	1	1	1	Affinity Capture-RNA
PPA2	YMR267W	Mitochondrial inorganic pyrophosphatase	physical	1	1	1	Affinity Capture-RNA
PDR3	YBL005W	Transcriptional activator of the pleiotropic drug resistance network	physical	1	1	1	Affinity Capture-RNA
SSN2	YDR443C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
PPN2	YNL217W	Zn2+-dependent endopolyphosphatase	physical	1	1	1	Affinity Capture-RNA
PNC1	YGL037C	Nicotinamidase that converts nicotinamide to nicotinic acid	physical	1	1	1	Affinity Capture-RNA
RPS22B	YLR367W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
PIG1	YLR273C	Putative targeting subunit for type-1 protein phosphatase Glc7p	physical	1	1	1	Affinity Capture-RNA
RPL6A	YML073C	Ribosomal 60S subunit protein L6A	physical	1	1	1	Affinity Capture-RNA
PIN3	YPR154W	Negative regulator of actin nucleation-promoting factor activity	physical	1	1	1	Affinity Capture-RNA
SVF1	YDR346C	Protein with a potential role in cell survival pathways	physical	1	1	1	Affinity Capture-RNA
RDS3	YPR094W	Component of the SF3b subcomplex of the U2 snRNP	physical	1	1	1	Affinity Capture-RNA
RDS3	YPR094W	Component of the SF3b subcomplex of the U2 snRNP	genetic	1	1	1	Negative Genetic
ROT2	YBR229C	Glucosidase II catalytic subunit	physical	1	1	1	Affinity Capture-RNA
RBK1	YCR036W	Ribokinase, phosphorylates ribose to ribose-5-phosphate	physical	1	1	1	Affinity Capture-RNA
SEA4	YBL104C	Subunit of SEACAT, a subcomplex of the SEA complex	physical	1	1	1	Affinity Capture-RNA
SCS22	YBL091C-A	Protein involved in regulation of phospholipid metabolism	physical	1	1	1	Affinity Capture-RNA
YDR061W	YDR061W	Protein with similarity to ABC transporter family members	physical	1	1	1	Affinity Capture-RNA
VPS501	YKR078W	Vacuolar SNX-BAR protein	physical	1	1	1	Affinity Capture-RNA
RPL40B	YKR094C	Ubiquitin-ribosomal 60S subunit protein L40B fusion protein	physical	1	1	1	Affinity Capture-RNA
UTR4	YEL038W	Protein with sequence similarity to acireductone synthases	physical	1	1	1	Affinity Capture-RNA
OPI10	YOL032W	Protein with a possible role in phospholipid biosynthesis	physical	1	1	1	Affinity Capture-RNA
RCF3	YBR255C-A	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
YKT6	YKL196C	Vesicle membrane protein (v-SNARE) with acyltransferase activity	physical	1	1	1	Affinity Capture-RNA
YKT6	YKL196C	Vesicle membrane protein (v-SNARE) with acyltransferase activity	genetic	1	1	1	Negative Genetic
PEP12	YOR036W	Target membrane receptor (t-SNARE)	physical	1	1	1	Affinity Capture-RNA
SEC65	YML105C	Subunit of the signal recognition particle (SRP)	physical	1	1	1	Affinity Capture-RNA
SGT2	YOR007C	Glutamine-rich cytoplasmic cochaperone	physical	1	1	1	Affinity Capture-RNA
YND1	YER005W	Apyrase with wide substrate specificity	physical	1	1	1	Affinity Capture-RNA
TOA2	YKL058W	TFIIA small subunit	physical	1	1	1	Affinity Capture-RNA
RPL33B	YOR234C	Ribosomal 60S subunit protein L33B	physical	1	1	1	Affinity Capture-RNA
TAF12	YDR145W	Subunit (61/68 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
TIM8	YJR135W-A	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
TAF4	YMR005W	TFIID subunit (48 kDa)	physical	1	1	1	Affinity Capture-RNA
PST1	YDR055W	Cell wall protein that contains a putative GPI-attachment site	physical	1	1	1	Affinity Capture-RNA
SMX3	YPR182W	Core Sm protein Sm F	physical	1	1	1	Affinity Capture-RNA
YSF3	YNL138W-A	Component of the SF3b subcomplex of the U2 snRNP	physical	1	1	1	Affinity Capture-RNA
YDR018C	YDR018C	Probable membrane protein with three predicted transmembrane domains	physical	1	1	1	Affinity Capture-RNA
SSO1	YPL232W	Plasma membrane t-SNARE	physical	1	1	1	Affinity Capture-RNA
PMP3	YDR276C	Small plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
TPK1	YJL164C	cAMP-dependent protein kinase catalytic subunit	physical	1	1	1	Affinity Capture-RNA
PRE6	YOL038W	Alpha 4 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
YDR365W-B	YDR365W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-RNA
RDL1	YOR285W	Thiosulfate sulfurtransferase	physical	1	1	1	Affinity Capture-RNA
YLR146W-A	YLR146W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YFL041W-A	YFL041W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NKP1	YDR383C	Central kinetochore protein and subunit of the Ctf19 complex	physical	1	1	1	Affinity Capture-RNA
SHE9	YDR393W	Protein required for normal mitochondrial morphology	physical	1	1	1	Affinity Capture-RNA
SDH2	YLL041C	Iron-sulfur protein subunit of succinate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
RCI50	YKL133C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
REX3	YLR107W	RNA exonuclease	physical	1	1	1	Affinity Capture-RNA
STE13	YOR219C	Dipeptidyl aminopeptidase	physical	1	1	1	Affinity Capture-RNA
XPT1	YJR133W	Xanthine-guanine phosphoribosyl transferase	physical	1	1	1	Affinity Capture-RNA
YPC1	YBR183W	Alkaline ceramidase	physical	1	1	1	Affinity Capture-RNA
PEX30	YLR324W	ER-resident protein involved in peroxisomal biogenesis	physical	1	1	1	Affinity Capture-RNA
RPL42A	YNL162W	Ribosomal 60S subunit protein L42A	physical	1	1	1	Affinity Capture-RNA
RSM10	YDR041W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
SEF1	YBL066C	Putative transcription factor	physical	1	1	1	Affinity Capture-RNA
SNL1	YIL016W	Ribosome-associated protein	physical	1	1	1	Affinity Capture-RNA
VPS45	YGL095C	Protein of the Sec1p/Munc-18 family	physical	1	1	1	Affinity Capture-RNA
NSE3	YDR288W	Component of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
TOP2	YNL088W	Topoisomerase II	physical	1	1	1	Affinity Capture-RNA
RPS31	YLR167W	Fusion protein cleaved to yield ribosomal protein S31 and ubiquitin	physical	1	1	1	Affinity Capture-RNA
NDT80	YHR124W	Meiosis-specific transcription factor	physical	1	1	1	Affinity Capture-RNA
RPL32	YBL092W	Ribosomal 60S subunit protein L32	physical	1	1	1	Affinity Capture-RNA
RTK1	YDL025C	Putative protein kinase, potentially phosphorylated by Cdc28p	physical	1	1	1	Affinity Capture-RNA
SSH1	YBR283C	Subunit of the Ssh1 translocon complex	physical	1	1	1	Affinity Capture-RNA
YGR130C	YGR130C	Component of the eisosome with unknown function	physical	1	1	1	Affinity Capture-RNA
SPT2	YER161C	Protein involved in negative regulation of transcription	physical	1	1	1	Affinity Capture-RNA
YIM1	YMR152W	Aldehyde reductase	physical	1	1	1	Affinity Capture-RNA
PEP4	YPL154C	Vacuolar aspartyl protease (proteinase A)	physical	1	1	1	Affinity Capture-RNA
UBC1	YDR177W	Ubiquitin-conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
SEC13	YLR208W	Structural component of 3 complexes	genetic	1	1	1	Negative Genetic
PAF1	YBR279W	Component of the Paf1p complex involved in transcription elongation	physical	1	1	1	Affinity Capture-RNA
RQC1	YDR333C	Component of the ribosome quality control complex (RQC)	physical	1	1	1	Affinity Capture-RNA
YDR261W-B	YDR261W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-RNA
RPS5	YJR123W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SRB6	YBR253W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
YOR1	YGR281W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-RNA
YOR343W-A	YOR343W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-RNA
VTC2	YFL004W	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Affinity Capture-RNA
TSC11	YER093C	Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p)	physical	1	1	1	Affinity Capture-RNA
RPO21	YDL140C	RNA polymerase II largest subunit B220	physical	1	1	1	Affinity Capture-RNA
RPO21	YDL140C	RNA polymerase II largest subunit B220	genetic	1	1	1	Negative Genetic
TAF9	YMR236W	Subunit (17 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
YRB1	YDR002W	Ran GTPase binding protein	physical	1	1	1	Affinity Capture-RNA
YRB1	YDR002W	Ran GTPase binding protein	genetic	1	1	1	Negative Genetic
YCL012C	YCL012C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SHE3	YBR130C	Protein adaptor between Myo4p and the She2p-mRNA complex	physical	1	1	1	Affinity Capture-RNA
SEC39	YLR440C	Component of the Dsl1p tethering complex	physical	1	1	1	Affinity Capture-RNA
SEC39	YLR440C	Component of the Dsl1p tethering complex	genetic	1	1	1	Negative Genetic
SPC19	YDR201W	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
RRF1	YHR038W	Mitochondrial ribosome recycling factor	physical	1	1	1	Affinity Capture-RNA
SSA1	YAL005C	ATPase involved in protein folding and NLS-directed nuclear transport	physical	1	1	1	Affinity Capture-RNA
TAN1	YGL232W	Putative tRNA acetyltransferase	physical	1	1	1	Affinity Capture-RNA
TML25	YLR118C	Acyl-protein thioesterase responsible for depalmitoylation of Gpa1p	physical	1	1	1	Affinity Capture-RNA
SIF2	YBR103W	WD40 repeat-containing subunit of Set3C histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
STB2	YMR053C	Protein that interacts with Sin3p in a two-hybrid assay	physical	1	1	1	Affinity Capture-RNA
RTT101	YJL047C	Cullin subunit of a Roc1p-dependent E3 ubiquitin ligase complex	physical	1	1	1	Affinity Capture-RNA
RPS29B	YDL061C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SSA4	YER103W	Heat shock protein that is highly induced upon stress	physical	1	1	1	Affinity Capture-RNA
PRP40	YKL012W	U1 snRNP protein involved in splicing	physical	1	1	1	Affinity Capture-RNA
YIR042C	YIR042C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
OYE2	YHR179W	Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN)	physical	1	1	1	Affinity Capture-RNA
OCA6	YDR067C	Cytoplasmic protein required for replication of Brome mosaic virus	physical	1	1	1	Affinity Capture-RNA
NCR1	YPL006W	Vacuolar membrane protein involved with Npc2p in sterol trafficking	physical	1	1	1	Affinity Capture-RNA
NGL3	YML118W	3'-5' exonuclease specific for poly-A RNAs	physical	1	1	1	Affinity Capture-RNA
YPL199C	YPL199C	Protein involved in nonstop mRNA decay	physical	1	1	1	Affinity Capture-RNA
STO1	YMR125W	Large subunit of the nuclear mRNA cap-binding protein complex	genetic	1	1	1	Negative Genetic
PDE1	YGL248W	Low-affinity cyclic AMP phosphodiesterase	physical	1	1	1	Affinity Capture-RNA
YPR1	YDR368W	NADPH-dependent aldo-keto reductase	physical	1	1	1	Affinity Capture-RNA
TPM2	YIL138C	Minor isoform of tropomyosin	physical	1	1	1	Affinity Capture-RNA
RPC10	YHR143W-A	RNA polymerase subunit ABC10-alpha, found in RNA pol I, II, and III	physical	1	1	1	Affinity Capture-RNA
RPN10	YHR200W	Proteasome polyubiquitin receptor	physical	1	1	1	Affinity Capture-RNA
SER1	YOR184W	3-phosphoserine aminotransferase	physical	1	1	1	Affinity Capture-RNA
PET123	YOR158W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
PAM16	YJL104W	Subunit of the import motor (PAM complex)	physical	1	1	1	Affinity Capture-RNA
NBP2	YDR162C	Protein involved in the HOG (high osmolarity glycerol) pathway	physical	1	1	1	Affinity Capture-RNA
SEC2	YNL272C	Guanyl-nucleotide exchange factor for the small G-protein Sec4p	physical	1	1	1	Affinity Capture-RNA
YCR016W	YCR016W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
UBC9	YDL064W	SUMO-conjugating enzyme involved in the Smt3p conjugation pathway	physical	1	1	1	Affinity Capture-RNA
TCB1	YOR086C	Lipid-binding ER protein involved in ER-plasma membrane tethering	physical	1	1	1	Affinity Capture-RNA
YHL042W	YHL042W	Endoplasmic reticulum protein	physical	1	1	1	Affinity Capture-RNA
SFT1	YKL006C-A	Intra-Golgi v-SNARE	physical	1	1	1	Affinity Capture-RNA
SEC17	YBL050W	Alpha-SNAP cochaperone	physical	1	1	1	Affinity Capture-RNA
POG1	YIL122W	DNA-binding transcriptional activator	physical	1	1	1	Affinity Capture-RNA
SLF1	YDR515W	RNA binding protein that associates with polysomes	physical	1	1	1	Affinity Capture-RNA
SEC21	YNL287W	Gamma subunit of coatomer	physical	1	1	1	Affinity Capture-RNA
PKC1	YBL105C	Protein serine/threonine kinase	physical	1	1	1	Affinity Capture-RNA
ROX3	YBL093C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
RPL16A	YIL133C	Ribosomal 60S subunit protein L16A	physical	1	1	1	Affinity Capture-RNA
YLR342W-A	YLR342W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VPS35	YJL154C	Endosomal subunit of membrane-associated retromer complex	physical	1	1	1	Affinity Capture-RNA
YIF1	YNL263C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
YGR237C	YGR237C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YTA7	YGR270W	Chromatin-binding ATPase that regulates histone gene expression	physical	1	1	1	Affinity Capture-RNA
TFA2	YKR062W	TFIIE small subunit	physical	1	1	1	Affinity Capture-RNA
UIP5	YKR044W	Protein of unknown function that interacts with Ulp1p	physical	1	1	1	Affinity Capture-RNA
YLR456W	YLR456W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RTT105	YER104W	Chaperone for Replication Protein A complex (RPA)	physical	1	1	1	Affinity Capture-RNA
TUB2	YFL037W	Beta-tubulin	physical	1	1	1	Affinity Capture-RNA
SOD2	YHR008C	Mitochondrial manganese superoxide dismutase	physical	1	1	1	Affinity Capture-RNA
OSH6	YKR003W	Oxysterol-binding phosphatidylserine transferase	physical	1	1	1	Affinity Capture-RNA
SEC4	YFL005W	Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
RET3	YPL010W	Zeta subunit of the coatomer complex (COPI)	physical	1	1	1	Affinity Capture-RNA
YOR062C	YOR062C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YKL033W-A	YKL033W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YML131W	YML131W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YBR137W	YBR137W	Protein with a role in ER delivery of tail-anchored membrane proteins	physical	1	1	1	Affinity Capture-RNA
PRC1	YMR297W	Vacuolar carboxypeptidase Y (proteinase C, CPY)	physical	1	1	1	Affinity Capture-RNA
TAH1	YCR060W	Component of conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1)	physical	1	1	1	Affinity Capture-RNA
PDR8	YLR266C	Transcription factor	physical	1	1	1	Affinity Capture-RNA
RPB5	YBR154C	RNA polymerase subunit ABC27	physical	1	1	1	Affinity Capture-RNA
RPB5	YBR154C	RNA polymerase subunit ABC27	genetic	1	1	1	Positive Genetic
YSC83	YHR017W	Non-essential mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RIM2	YBR192W	Mitochondrial pyrimidine nucleotide transporter	physical	1	1	1	Affinity Capture-RNA
PNG1	YPL096W	Conserved peptide N-glycanase	physical	1	1	1	Affinity Capture-RNA
PRP28	YDR243C	Pre-mRNA splicing factor	physical	1	1	1	Affinity Capture-RNA
PRP28	YDR243C	Pre-mRNA splicing factor	genetic	1	1	1	Negative Genetic
TCO89	YPL180W	Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p)	physical	1	1	1	Affinity Capture-RNA
UPS2	YLR168C	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
TDA9	YML081W	Transcription factor that regulates acetate production	physical	1	1	1	Affinity Capture-RNA
YML6	YML025C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
YJR112W-A	YJR112W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
UBX3	YDL091C	Clathrin-coated vesicle component, regulator of endocytosis	physical	1	1	1	Affinity Capture-RNA
TOF2	YKR010C	Protein required for rDNA silencing and mitotic rDNA condensation	physical	1	1	1	Affinity Capture-RNA
TFB4	YPR056W	Subunit of TFIIH complex	physical	1	1	1	Affinity Capture-RNA
NCB2	YDR397C	Subunit of a heterodimeric NC2 transcription regulator complex	physical	1	1	1	Affinity Capture-RNA
PSF2	YJL072C	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	physical	1	1	1	Affinity Capture-RNA
UGA3	YDL170W	Transcriptional activator for GABA-dependent induction of GABA genes	physical	1	1	1	Affinity Capture-RNA
YMR262W	YMR262W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VPS52	YDR484W	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-RNA
RSE1	YML049C	Protein involved in pre-mRNA splicing	genetic	1	1	1	Negative Genetic
NRK1	YNL129W	Nicotinamide riboside kinase	physical	1	1	1	Affinity Capture-RNA
YGL108C	YGL108C	Protein of unknown function, predicted to be palmitoylated	physical	1	1	1	Affinity Capture-RNA
YGR127W	YGR127W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	physical	1	1	1	Affinity Capture-RNA
TOM1	YDR457W	E3 ubiquitin ligase of the hect-domain class	genetic	1	1	1	Dosage Rescue
YGR054W	YGR054W	Eukaryotic initiation factor eIF2A	physical	1	1	1	Affinity Capture-RNA
RRP45	YDR280W	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-RNA
RPB11	YOL005C	RNA polymerase II subunit B12.5	physical	1	1	1	Affinity Capture-RNA
SUR2	YDR297W	Sphinganine C4-hydroxylase	physical	1	1	1	Affinity Capture-RNA
YDL241W	YDL241W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PUP2	YGR253C	Alpha 5 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
RME1	YGR044C	Zinc finger protein involved in control of meiosis	physical	1	1	1	Affinity Capture-RNA
SCC2	YDR180W	Subunit of cohesin loading factor (Scc2p-Scc4p)	physical	1	1	1	Affinity Capture-RNA
YGR038C-A	YGR038C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-RNA
OPY1	YBR129C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPN3	YER021W	Essential non-ATPase regulatory subunit of the 26S proteasome lid	physical	1	1	1	Affinity Capture-RNA
POL12	YBL035C	B subunit of DNA polymerase alpha-primase complex	physical	1	1	1	Affinity Capture-RNA
SKN1	YGR143W	Protein involved in sphingolipid biosynthesis	physical	1	1	1	Affinity Capture-RNA
YML054C-A	YML054C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PKP2	YGL059W	Mitochondrial protein kinase	physical	1	1	1	Affinity Capture-RNA
PDC1	YLR044C	Major of three pyruvate decarboxylase isozymes	physical	1	1	1	Affinity Capture-RNA
OSW2	YLR054C	Protein of unknown function reputedly involved in spore wall assembly	physical	1	1	1	Affinity Capture-RNA
RHO3	YIL118W	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	physical	1	1	1	Affinity Capture-RNA
RHO3	YIL118W	Non-essential small GTPase of the Rho/Rac family of Ras-like proteins	genetic	1	1	1	Negative Genetic
YDL109C	YDL109C	Putative lipase	physical	1	1	1	Affinity Capture-RNA
YHL044W	YHL044W	Putative integral membrane protein	physical	1	1	1	Affinity Capture-RNA
NUT1	YGL151W	Component of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
RPL20B	YOR312C	Ribosomal 60S subunit protein L20B	physical	1	1	1	Affinity Capture-RNA
SGF73	YGL066W	Subunit of DUBm module of SAGA and SLIK	physical	1	1	1	Affinity Capture-RNA
SAD1	YFR005C	Conserved zinc-finger domain protein involved in pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
SAD1	YFR005C	Conserved zinc-finger domain protein involved in pre-mRNA splicing	genetic	1	1	1	Negative Genetic
SEC6	YIL068C	Essential 88kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-RNA
YNL115C	YNL115C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SNA4	YDL123W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RAD3	YER171W	5' to 3' DNA helicase	physical	1	1	1	Affinity Capture-RNA
NOP14	YDL148C	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
NOP14	YDL148C	Nucleolar protein	genetic	1	1	1	Positive Genetic
SEC9	YGR009C	t-SNARE protein required for secretory vesicle-plasma membrane fusion	physical	1	1	1	Affinity Capture-RNA
YMR099C	YMR099C	Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase)	physical	1	1	1	Affinity Capture-RNA
RET2	YFR051C	Delta subunit of the coatomer complex (COPI)	physical	1	1	1	Affinity Capture-RNA
PIF1	YML061C	DNA helicase, potent G-quadruplex DNA binder/unwinder	physical	1	1	1	Affinity Capture-RNA
PRE10	YOR362C	Alpha 7 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
YLR154C-G	YLR154C-G	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SSY1	YDR160W	Component of the SPS plasma membrane amino acid sensor system	physical	1	1	1	Affinity Capture-RNA
TSA1	YML028W	Thioredoxin peroxidase	physical	1	1	1	Affinity Capture-RNA
YTA6	YPL074W	Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family	physical	1	1	1	Affinity Capture-RNA
SLH1	YGR271W	Subunit of ribosome-associated quality control trigger complex (RQT)	physical	1	1	1	Affinity Capture-RNA
RPE1	YJL121C	D-ribulose-5-phosphate 3-epimerase	physical	1	1	1	Affinity Capture-RNA
PUT2	YHR037W	Delta-1-pyrroline-5-carboxylate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
RPS13	YDR064W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
SMC3	YJL074C	Subunit of the multiprotein cohesin complex	physical	1	1	1	Affinity Capture-RNA
SDH1	YKL148C	Flavoprotein subunit of succinate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
YLR345W	YLR345W	Similar to 6-phosphofructo-2-kinase enzymes	physical	1	1	1	Affinity Capture-RNA
SDH7	YDR511W	Mitochondrial protein involved in assembly of succinate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
RPS16B	YDL083C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS16B	YDL083C	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
SPO12	YHR152W	Nucleolar protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RAD2	YGR258C	Single-stranded DNA endonuclease	physical	1	1	1	Affinity Capture-RNA
POL32	YJR043C	Third subunit of DNA polymerase delta	physical	1	1	1	Affinity Capture-RNA
TOG1	YER184C	Transcriptional activator of oleate genes	physical	1	1	1	Affinity Capture-RNA
PPM1	YDR435C	Carboxyl methyltransferase	physical	1	1	1	Affinity Capture-RNA
SRD1	YCR018C	Protein involved in the processing of pre-rRNA to mature rRNA	physical	1	1	1	Affinity Capture-RNA
YGL242C	YGL242C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YLR157W-E	YLR157W-E	Putative protein of unknown function identified by gene-trapping	physical	1	1	1	Affinity Capture-RNA
PDL32	YMR087W	Putative ADP-ribose-1''-monophosphatase	physical	1	1	1	Affinity Capture-RNA
TRR1	YDR353W	Cytoplasmic thioredoxin reductase	physical	1	1	1	Affinity Capture-RNA
SDH9	YJL045W	Minor succinate dehydrogenase isozyme	physical	1	1	1	Affinity Capture-RNA
SES1	YDR023W	Cytosolic seryl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
SEI1	YLR404W	Seipin involved in lipid droplet (LD) assembly	physical	1	1	1	Affinity Capture-RNA
YOL013W-A	YOL013W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RMR1	YGL250W	Protein required for meiotic recombination and gene conversion	physical	1	1	1	Affinity Capture-RNA
RSC8	YFR037C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
RSC8	YFR037C	Component of the RSC chromatin remodeling complex	genetic	1	1	1	Negative Genetic
SNT309	YPR101W	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
NEJ1	YLR265C	DNA end-binding protein required for nonhomologous end joining (NHEJ)	physical	1	1	1	Affinity Capture-RNA
OPI1	YHL020C	Transcriptional regulator of a variety of genes	physical	1	1	1	Affinity Capture-RNA
SPR1	YOR190W	Sporulation-specific exo-1,3-beta-glucanase	physical	1	1	1	Affinity Capture-RNA
RPC11	YDR045C	RNA polymerase III subunit C11	physical	1	1	1	Affinity Capture-RNA
PTK2	YJR059W	Serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
RIC1	YLR039C	Protein involved in retrograde transport to the cis-Golgi network	physical	1	1	1	Affinity Capture-RNA
RIC1	YLR039C	Protein involved in retrograde transport to the cis-Golgi network	genetic	1	1	1	Negative Genetic
SSH4	YKL124W	Specificity factor required for Rsp5p-dependent ubiquitination	physical	1	1	1	Affinity Capture-RNA
PEX31	YGR004W	Peroxisomal integral membrane protein	physical	1	1	1	Affinity Capture-RNA
NPA3	YJR072C	Member of the conserved GPN-loop GTPase family	physical	1	1	1	Affinity Capture-RNA
RFA1	YAR007C	Subunit of heterotrimeric Replication Protein A (RPA)	physical	1	1	1	Affinity Capture-RNA
SUB1	YMR039C	Transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
SNM1	YDR478W	Ribonuclease MRP complex subunit	physical	1	1	1	Affinity Capture-RNA
PUS9	YDL036C	Mitochondrial tRNA:pseudouridine synthase	physical	1	1	1	Affinity Capture-RNA
NBP35	YGL091C	Essential cytoplasmic iron-sulfur cluster binding protein	physical	1	1	1	Affinity Capture-RNA
PTC5	YOR090C	Mitochondrial type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-RNA
RPL37A	YLR185W	Ribosomal 60S subunit protein L37A	physical	1	1	1	Affinity Capture-RNA
RFU1	YLR073C	Protein that inhibits Doa4p deubiquitinating activity	physical	1	1	1	Affinity Capture-RNA
YOR111W	YOR111W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RGT2	YDL138W	Plasma membrane high glucose sensor that regulates glucose transport	physical	1	1	1	Affinity Capture-RNA
YPT7	YML001W	Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
YJL132W	YJL132W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PAM17	YKR065C	Constituent of the TIM23 complex	physical	1	1	1	Affinity Capture-RNA
RPB8	YOR224C	RNA polymerase subunit ABC14.5	physical	1	1	1	Affinity Capture-RNA
SAP185	YJL098W	Protein that forms a complex with the Sit4p protein phosphatase	physical	1	1	1	Affinity Capture-RNA
SWT1	YOR166C	RNA endoribonuclease involved in perinuclear mRNP quality control	physical	1	1	1	Affinity Capture-RNA
SRB7	YDR308C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
OMS1	YDR316W	Protein integral to the mitochondrial membrane	physical	1	1	1	Affinity Capture-RNA
PPZ2	YDR436W	Serine/threonine protein phosphatase Z, isoform of Ppz1p	physical	1	1	1	Affinity Capture-RNA
NIS1	YNL078W	Protein involved in axial bud site selection	physical	1	1	1	Affinity Capture-RNA
RRN5	YLR141W	Protein involved in transcription of rDNA by RNA polymerase I	physical	1	1	1	Affinity Capture-RNA
SEC72	YLR292C	Non-essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-RNA
TMA19	YKL056C	Protein that associates with ribosomes	physical	1	1	1	Affinity Capture-RNA
YIL001W	YIL001W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YHR078W	YHR078W	High osmolarity-regulated gene of unknown function	physical	1	1	1	Affinity Capture-RNA
TIM17	YJL143W	Essential component of the TIM23 complex	physical	1	1	1	Affinity Capture-RNA
SNT2	YGL131C	Subunit of Snt2C complex, RING finger ubiquitin ligase (E3)	physical	1	1	1	Affinity Capture-RNA
SDO1	YLR022C	Guanine nucleotide exchange factor (GEF) for Ria1p	physical	1	1	1	Affinity Capture-RNA
YGR161W-C	YGR161W-C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SWM2	YNR004W	Protein with a role in snRNA and snoRNA cap trimethylation	physical	1	1	1	Affinity Capture-RNA
SWM2	YNR004W	Protein with a role in snRNA and snoRNA cap trimethylation	genetic	1	1	1	Negative Genetic
RPO26	YPR187W	RNA polymerase subunit ABC23	physical	1	1	1	Affinity Capture-RNA
PHO13	YDL236W	Conserved phosphatase acting as a metabolite repair enzyme	physical	1	1	1	Affinity Capture-RNA
PGA2	YNL149C	Essential protein required for maturation of Gas1p and Pho8p	physical	1	1	1	Affinity Capture-RNA
NRT1	YOR071C	High-affinity nicotinamide riboside transporter	physical	1	1	1	Affinity Capture-RNA
TLG1	YDR468C	Essential t-SNARE that mediates fusion of vesicles with the late Golgi	physical	1	1	1	Affinity Capture-RNA
YIL089W	YIL089W	Protein of unknown function found in the ER and vacuole lumen	physical	1	1	1	Affinity Capture-RNA
TIF34	YMR146C	eIF3i subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
TYW3	YGL050W	tRNA methyltransferase required for synthesis of wybutosine	physical	1	1	1	Affinity Capture-RNA
YCR007C	YCR007C	Putative integral membrane protein	physical	1	1	1	Affinity Capture-RNA
TBS1	YBR150C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPT32	YGL210W	Rab family GTPase involved in the exocytic pathway	physical	1	1	1	Affinity Capture-RNA
SCM3	YDL139C	Nonhistone component of centromeric chromatin	physical	1	1	1	Affinity Capture-RNA
SEC31	YDL195W	Component of the Sec13p-Sec31p complex of the COPII vesicle coat	physical	1	1	1	Affinity Capture-RNA
NIT2	YJL126W	Nit protein	physical	1	1	1	Affinity Capture-RNA
SPO1	YNL012W	Meiosis-specific prospore protein	physical	1	1	1	Affinity Capture-RNA
TAF13	YML098W	TFIID subunit (19 kDa)	physical	1	1	1	Affinity Capture-RNA
YMR206W	YMR206W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SAT4	YCR008W	Ser/Thr protein kinase involved in salt tolerance, nutrient response	physical	1	1	1	Affinity Capture-RNA
RFC2	YJR068W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Affinity Capture-RNA
SWC4	YGR002C	Component of the Swr1p complex that incorporates Htz1p into chromatin	physical	1	1	1	Affinity Capture-RNA
PSF3	YOL146W	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	physical	1	1	1	Affinity Capture-RNA
SAP155	YFR040W	Protein required for function of the Sit4p protein phosphatase	physical	1	1	1	Affinity Capture-RNA
YPR127W	YPR127W	Putative pyridoxine 4-dehydrogenase	physical	1	1	1	Affinity Capture-RNA
RGP1	YDR137W	Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p)	physical	1	1	1	Affinity Capture-RNA
SPR6	YER115C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PFU1	YDR306C	F-box protein that regulates pheromone-dependent morphogenesis	physical	1	1	1	Affinity Capture-RNA
PIP2	YOR363C	Autoregulatory, oleate-activated transcription factor	physical	1	1	1	Affinity Capture-RNA
VTH2	YJL222W	Putative membrane glycoprotein	physical	1	1	1	Affinity Capture-RNA
PUS1	YPL212C	tRNA:pseudouridine synthase	physical	1	1	1	Affinity Capture-RNA
URK1	YNR012W	Uridine/cytidine kinase	physical	1	1	1	Affinity Capture-RNA
PEX35	YGR168C	Regulator of peroxisome abundance	physical	1	1	1	Affinity Capture-RNA
YDR248C	YDR248C	Putative gluconokinase	physical	1	1	1	Affinity Capture-RNA
PCC1	YKR095W-A	Component of the EKC/KEOPS protein complex	physical	1	1	1	Affinity Capture-RNA
YJL070C	YJL070C	Putative metallo-dependent hydrolase superfamily protein	physical	1	1	1	Affinity Capture-RNA
PRP38	YGR075C	Unique component of the U4/U6.U5 tri-snRNP particle	physical	1	1	1	Affinity Capture-RNA
PPS1	YBR276C	Protein phosphatase	physical	1	1	1	Affinity Capture-RNA
SEC28	YIL076W	Epsilon-COP subunit of the coatomer	physical	1	1	1	Affinity Capture-RNA
YLR363W-A	YLR363W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ZEO1	YOL109W	Peripheral membrane protein of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
OCA2	YNL056W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TTI1	YKL033W	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
YHB1	YGR234W	Nitric oxide oxidoreductase	physical	1	1	1	Affinity Capture-RNA
PDA1	YER178W	E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex	physical	1	1	1	Affinity Capture-RNA
RGD2	YFL047W	GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p	physical	1	1	1	Affinity Capture-RNA
RCR2	YDR003W	Vacuolar ubiquitin ligase-substrate adaptor	physical	1	1	1	Affinity Capture-RNA
SEN1	YLR430W	ATP-dependent 5' to 3' RNA/DNA and DNA helicase	physical	1	1	1	Affinity Capture-RNA
YPL245W	YPL245W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RCR1	YBR005W	Plasma membrane (PM) ubiquitin ligase-substrate adaptor	physical	1	1	1	Affinity Capture-RNA
RDH54	YBR073W	DNA-dependent ATPase	physical	1	1	1	Affinity Capture-RNA
RAD34	YDR314C	Protein involved in nucleotide excision repair (NER)	physical	1	1	1	Affinity Capture-RNA
RIE1	YGR250C	RNA binding protein and negative regulator of START	physical	1	1	1	Affinity Capture-RNA
TRS33	YOR115C	Core component of TRAPP complexes I, II and IV	physical	1	1	1	Affinity Capture-RNA
UAF30	YOR295W	Subunit of UAF (upstream activation factor) complex	physical	1	1	1	Affinity Capture-RNA
RIM15	YFL033C	Protein kinase involved in cell proliferation in response to nutrients	physical	1	1	1	Affinity Capture-RNA
YPD1	YDL235C	Osmotic stress-responsive phosphorelay intermediate sensor protein	physical	1	1	1	Affinity Capture-RNA
RHB1	YCR027C	Putative Rheb-related GTPase	physical	1	1	1	Affinity Capture-RNA
PBN1	YCL052C	Component of glycosylphosphatidylinositol-mannosyltransferase I	physical	1	1	1	Affinity Capture-RNA
TFG1	YGR186W	TFIIF (Transcription Factor II) largest subunit	physical	1	1	1	Affinity Capture-RNA
SAW1	YAL027W	5'- and 3'-flap DNA binding protein	physical	1	1	1	Affinity Capture-RNA
TOA1	YOR194C	TFIIA large subunit	physical	1	1	1	Affinity Capture-RNA
TOA1	YOR194C	TFIIA large subunit	genetic	1	1	1	Positive Genetic
PIB1	YDR313C	RING-type ubiquitin ligase of the endosomal and vacuolar membranes	physical	1	1	1	Affinity Capture-RNA
SMY1	YKL079W	Kinesin-like myosin passenger-protein	physical	1	1	1	Affinity Capture-RNA
YFR006W	YFR006W	Putative X-Pro aminopeptidase	physical	1	1	1	Affinity Capture-RNA
WHI2	YOR043W	Negative regulator of TORC1 in response to limiting leucine	physical	1	1	1	Affinity Capture-RNA
THI6	YPL214C	Thiamine-phosphate diphosphorylase and hydroxyethylthiazole kinase	physical	1	1	1	Affinity Capture-RNA
YPL113C	YPL113C	Glyoxylate reductase	physical	1	1	1	Affinity Capture-RNA
NTH1	YDR001C	Neutral trehalase, degrades trehalose	physical	1	1	1	Affinity Capture-RNA
TOM20	YGR082W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
YNL193W	YNL193W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RHO1	YPR165W	GTP-binding protein of the rho subfamily of Ras-like proteins	physical	1	1	1	Affinity Capture-RNA
SOM1	YEL059C-A	Subunit of the mitochondrial inner membrane peptidase (IMP)	physical	1	1	1	Affinity Capture-RNA
SNA3	YJL151C	Protein involved in efficient MVB sorting of proteins to the vacuole	physical	1	1	1	Affinity Capture-RNA
YFT2	YDR319C	Protein needed for ER membrane biosynthesis in response to ER stress	physical	1	1	1	Affinity Capture-RNA
YER010C	YER010C	Bifunctional HMG aldolase/oxaloacetate decarboxylase	physical	1	1	1	Affinity Capture-RNA
SMF3	YLR034C	Putative divalent metal ion transporter involved in iron homeostasis	physical	1	1	1	Affinity Capture-RNA
NIP7	YPL211W	Nucleolar protein required for 60S ribosome subunit biogenesis	physical	1	1	1	Affinity Capture-RNA
YDL144C	YDL144C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YRM1	YOR172W	Zinc finger transcription factor involved in multidrug resistance	physical	1	1	1	Affinity Capture-RNA
YHC3	YJL059W	Protein required for the ATP-dependent transport of arginine	physical	1	1	1	Affinity Capture-RNA
SUI2	YJR007W	Alpha subunit of the translation initiation factor eIF2	physical	1	1	1	Affinity Capture-RNA
RMD9	YGL107C	Mitochondrial protein that controls mitochondrial gene expression	physical	1	1	1	Affinity Capture-RNA
PFA3	YNL326C	Palmitoyltransferase for Vac8p	physical	1	1	1	Affinity Capture-RNA
YCL002C	YCL002C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PLP2	YOR281C	Protein that interacts with the CCT complex to stimulate actin folding	physical	1	1	1	Affinity Capture-RNA
RTA1	YGR213C	Protein involved in 7-aminocholesterol resistance	physical	1	1	1	Affinity Capture-RNA
POS5	YPL188W	Mitochondrial NADH kinase	physical	1	1	1	Affinity Capture-RNA
RRN9	YMR270C	Protein involved in promoting high level transcription of rDNA	physical	1	1	1	Affinity Capture-RNA
URM1	YIL008W	Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs	physical	1	1	1	Affinity Capture-RNA
NNK1	YKL171W	Protein kinase	physical	1	1	1	Affinity Capture-RNA
XBP1	YIL101C	Transcriptional repressor	physical	1	1	1	Affinity Capture-RNA
SIP5	YMR140W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPR28	YDR218C	Sporulation-specific homolog of the CDC3/10/11/12 family of genes	physical	1	1	1	Affinity Capture-RNA
YMR181C	YMR181C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PYP1	YNL010W	Sugar alcohol phosphatase	physical	1	1	1	Affinity Capture-RNA
PAN6	YIL145C	Pantothenate synthase	physical	1	1	1	Affinity Capture-RNA
PRM5	YIL117C	Pheromone-regulated protein, predicted to have 1 transmembrane segment	physical	1	1	1	Affinity Capture-RNA
STE11	YLR362W	Signal transducing MEK kinase	physical	1	1	1	Affinity Capture-RNA
TOH1	YJL171C	GPI-anchored cell wall protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RAD6	YGL058W	Ubiquitin-conjugating enzyme (E2)	physical	1	1	1	Affinity Capture-RNA
RIM4	YHL024W	Putative RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
VTA1	YLR181C	Multivesicular body (MVB) protein	physical	1	1	1	Affinity Capture-RNA
TAF1	YGR274C	TFIID subunit, involved in RNA pol II transcription initiation	physical	1	1	1	Affinity Capture-RNA
NRG2	YBR066C	Transcriptional repressor	physical	1	1	1	Affinity Capture-RNA
YBR138C	YBR138C	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PDB1	YBR221C	E1 beta subunit of the pyruvate dehydrogenase (PDH) complex	physical	1	1	1	Affinity Capture-RNA
NRE1	YIR035C	Putative cytoplasmic short-chain dehydrogenase/reductase	physical	1	1	1	Affinity Capture-RNA
YPT52	YKR014C	Endosomal Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
RNH203	YLR154C	Ribonuclease H2 subunit	physical	1	1	1	Affinity Capture-RNA
YBP1	YBR216C	Protein involved in cellular response to oxidative stress	physical	1	1	1	Affinity Capture-RNA
VPS25	YJR102C	Component of the ESCRT-II complex	physical	1	1	1	Affinity Capture-RNA
RTR1	YER139C	Dual specificity protein phosphatase	physical	1	1	1	Affinity Capture-RNA
NCS6	YGL211W	Protein required for uridine thiolation of Gln, Lys, and Glu tRNAs	physical	1	1	1	Affinity Capture-RNA
YUH1	YJR099W	Ubiquitin C-terminal hydrolase	physical	1	1	1	Affinity Capture-RNA
YLR297W	YLR297W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
URA10	YMR271C	Minor orotate phosphoribosyltransferase (OPRTase) isozyme	physical	1	1	1	Affinity Capture-RNA
RPL27B	YDR471W	Ribosomal 60S subunit protein L27B	physical	1	1	1	Affinity Capture-RNA
SHH4	YLR164W	Putative alternate subunit of succinate dehydrogenase (SDH)	physical	1	1	1	Affinity Capture-RNA
PSY3	YLR376C	Component of Shu complex (aka PCSS complex)	physical	1	1	1	Affinity Capture-RNA
QCR10	YHR001W-A	Subunit of the ubiqunol-cytochrome c oxidoreductase complex	physical	1	1	1	Affinity Capture-RNA
NOP15	YNL110C	Constituent of 66S pre-ribosomal particles	physical	1	1	1	Affinity Capture-RNA
RIM8	YGL045W	Protein involved in proteolytic activation of Rim101p	physical	1	1	1	Affinity Capture-RNA
TAE1	YBR261C	AdoMet-dependent proline methyltransferase	physical	1	1	1	Affinity Capture-RNA
OTU2	YHL013C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VPS13	YLL040C	Lipid transport protein involved in prospore membrane morphogenesis	physical	1	1	1	Affinity Capture-RNA
TAF7	YMR227C	TFIID subunit (67 kDa)	physical	1	1	1	Affinity Capture-RNA
PRP31	YGR091W	Splicing factor	physical	1	1	1	Affinity Capture-RNA
PRP18	YGR006W	Splicing factor and component of snRNP U5	physical	1	1	1	Affinity Capture-RNA
YLR446W	YLR446W	Putative hexokinase	physical	1	1	1	Affinity Capture-RNA
RTC1	YOL138C	Subunit of SEACAT, a subcomplex of the SEA complex	physical	1	1	1	Affinity Capture-RNA
YNL092W	YNL092W	S-adenosylmethionine-dependent protein methyltransferase	physical	1	1	1	Affinity Capture-RNA
YOL131W	YOL131W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VPS17	YOR132W	Subunit of the membrane-associated retromer complex	physical	1	1	1	Affinity Capture-RNA
YML079W	YML079W	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RRD1	YIL153W	Peptidyl-prolyl cis/trans-isomerase	physical	1	1	1	Affinity Capture-RNA
TRI1	YMR233W	Non-essential sumoylated protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VPS21	YOR089C	Endosomal Rab family GTPase	physical	1	1	1	Affinity Capture-RNA
SSE2	YBR169C	Member of Hsp110 subclass of the heat shock protein 70 (HSP70) family	physical	1	1	1	Affinity Capture-RNA
SRP14	YDL092W	Signal recognition particle (SRP) subunit	physical	1	1	1	Affinity Capture-RNA
RPL14A	YKL006W	Ribosomal 60S subunit protein L14A	physical	1	1	1	Affinity Capture-RNA
THI11	YJR156C	Protein involved in synthesis of the thiamine precursor HMP	physical	1	1	1	Affinity Capture-RNA
VPS29	YHR012W	Subunit of the membrane-associated retromer complex	physical	1	1	1	Affinity Capture-RNA
SOP4	YJL192C	ER-membrane protein	physical	1	1	1	Affinity Capture-RNA
VMA3	YEL027W	Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase	physical	1	1	1	Affinity Capture-RNA
YSY6	YBR162W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
QCR7	YDR529C	Subunit 7 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Affinity Capture-RNA
YBR085C-A	YBR085C-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YGR109W-B	YGR109W-B	Retrotransposon TYA Gag and TYB Pol genes	physical	1	1	1	Affinity Capture-RNA
STI1	YOR027W	Evolutionarily-conserved Hsp90 cochaperone	physical	1	1	1	Affinity Capture-RNA
RPG1	YBR079C	eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
SIC1	YLR079W	Cyclin-dependent kinase inhibitor (CKI)	physical	1	1	1	Affinity Capture-RNA
SPP2	YOR148C	Essential protein that promotes the first step of splicing	physical	1	1	1	Affinity Capture-RNA
RPL40A	YIL148W	Ubiquitin-ribosomal 60S subunit protein L40A fusion protein	physical	1	1	1	Affinity Capture-RNA
NVJ1	YHR195W	Nuclear envelope protein	physical	1	1	1	Affinity Capture-RNA
YGR174W-A	YGR174W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RVS161	YCR009C	Amphiphysin-like lipid raft protein	physical	1	1	1	Affinity Capture-RNA
PRM9	YAR031W	Pheromone-regulated protein	physical	1	1	1	Affinity Capture-RNA
PAM18	YLR008C	Subunit of the import motor (PAM complex)	physical	1	1	1	Affinity Capture-RNA
RPL31B	YLR406C	Ribosomal 60S subunit protein L31B	physical	1	1	1	Affinity Capture-RNA
RPS29A	YLR388W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
UBX5	YDR330W	UBX domain-containing protein that interacts with Cdc48p	physical	1	1	1	Affinity Capture-RNA
RPS26B	YER131W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
RPS26B	YER131W	Protein component of the small (40S) ribosomal subunit	genetic	1	1	1	Negative Genetic
NQM1	YGR043C	Transaldolase of unknown function	physical	1	1	1	Affinity Capture-RNA
TVP23	YDR084C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
PSA1	YDL055C	GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)	physical	1	1	1	Affinity Capture-RNA
YPI1	YFR003C	Regulatory subunit of the type I protein phosphatase (PP1) Glc7p	physical	1	1	1	Affinity Capture-RNA
PRE1	YER012W	Beta 4 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
RNR4	YGR180C	Ribonucleotide-diphosphate reductase (RNR) small subunit	physical	1	1	1	Affinity Capture-RNA
RIB5	YBR256C	Riboflavin synthase	physical	1	1	1	Affinity Capture-RNA
YBR090C	YBR090C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RSF2	YJR127C	Zinc-finger protein	physical	1	1	1	Affinity Capture-RNA
YRA2	YKL214C	Member of the REF (RNA and export factor binding proteins) family	physical	1	1	1	Affinity Capture-RNA
UTR1	YJR049C	ATP-NADH kinase	physical	1	1	1	Affinity Capture-RNA
PUP3	YER094C	Beta 3 subunit of the 20S proteasome	physical	1	1	1	Affinity Capture-RNA
PTC3	YBL056W	Type 2C protein phosphatase (PP2C)	physical	1	1	1	Affinity Capture-RNA
SEC63	YOR254C	Essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-RNA
RPB10	YOR210W	RNA polymerase subunit ABC10-beta	physical	1	1	1	Affinity Capture-RNA
SNF11	YDR073W	Subunit of the SWI/SNF chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
YEL077C	YEL077C	Helicase-like protein encoded within the telomeric Y' element	physical	1	1	1	Affinity Capture-RNA
YPR148C	YPR148C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NYV1	YLR093C	v-SNARE component of the vacuolar SNARE complex	physical	1	1	1	Affinity Capture-RNA
TIM9	YEL020W-A	Essential protein of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
SWS2	YNL081C	Putative mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
PKR1	YMR123W	V-ATPase assembly factor	physical	1	1	1	Affinity Capture-RNA
YGR240C-A	YGR240C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PRP3	YDR473C	Splicing factor	physical	1	1	1	Affinity Capture-RNA
PRP3	YDR473C	Splicing factor	genetic	1	1	1	Negative Genetic
OSH3	YHR073W	Member of an oxysterol-binding protein family	physical	1	1	1	Affinity Capture-RNA
USE1	YGL098W	Essential SNARE protein localized to the ER	physical	1	1	1	Affinity Capture-RNA
PAN3	YKL025C	Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex	physical	1	1	1	Affinity Capture-RNA
UBA3	YPR066W	Protein that activates Rub1p (NEDD8) before neddylation	physical	1	1	1	Affinity Capture-RNA
SRP72	YPL210C	Core component of the signal recognition particle (SRP)	physical	1	1	1	Affinity Capture-RNA
PEX9	YMR018W	Peroxisomal membrane signal receptor for peroxisomal matrix proteins	physical	1	1	1	Affinity Capture-RNA
SDS24	YBR214W	Protein involved in cell separation during budding	physical	1	1	1	Affinity Capture-RNA
SEC18	YBR080C	AAA ATPase and SNARE disassembly chaperone	physical	1	1	1	Affinity Capture-RNA
YLR161W	YLR161W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NSG2	YNL156C	Protein involved in regulation of sterol biosynthesis	physical	1	1	1	Affinity Capture-RNA
NHP2	YDL208W	Protein related to mammalian high mobility group (HMG) proteins	physical	1	1	1	Affinity Capture-RNA
PCD1	YLR151C	8-oxo-dGTP diphosphatase	physical	1	1	1	Affinity Capture-RNA
TPS2	YDR074W	Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex	physical	1	1	1	Affinity Capture-RNA
YPK3	YBR028C	AGC kinase	physical	1	1	1	Affinity Capture-RNA
TSR3	YOR006C	Protein required for 20S pre-rRNA processing	physical	1	1	1	Affinity Capture-RNA
YPL088W	YPL088W	Putative aryl alcohol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
PUN1	YLR414C	Plasma membrane protein with a role in cell wall integrity	physical	1	1	1	Affinity Capture-RNA
SRB4	YER022W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
PRP5	YBR237W	RNA helicase in the DEAD-box family	physical	1	1	1	Affinity Capture-RNA
PRP5	YBR237W	RNA helicase in the DEAD-box family	genetic	1	1	1	Negative Genetic
RBL2	YOR265W	Protein involved in microtubule morphogenesis	physical	1	1	1	Affinity Capture-RNA
VMA1	YDL185W	Subunit A of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-RNA
PXA2	YKL188C	Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa1p	physical	1	1	1	Affinity Capture-RNA
TRM8	YDL201W	Catalytic subunit of a tRNA methyltransferase complex	physical	1	1	1	Affinity Capture-RNA
YTH1	YPR107C	Essential RNA-binding component of cleavage and polyadenylation factor	physical	1	1	1	Affinity Capture-RNA
TDA2	YER071C	Subunit of a complex that associates with actin filaments	physical	1	1	1	Affinity Capture-RNA
URA4	YLR420W	Dihydroorotase	physical	1	1	1	Affinity Capture-RNA
PEX5	YDR244W	Peroxisomal membrane signal receptor for peroxisomal matrix proteins	physical	1	1	1	Affinity Capture-RNA
PEX21	YGR239C	Peroxin required for peroxisomal matrix protein targeting	physical	1	1	1	Affinity Capture-RNA
VPS60	YDR486C	Protein involved in late endosome to vacuole transport	physical	1	1	1	Affinity Capture-RNA
SCW4	YGR279C	Cell wall protein with similarity to glucanases	physical	1	1	1	Affinity Capture-RNA
PRS4	YBL068W	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP	physical	1	1	1	Affinity Capture-RNA
PRS3	YHL011C	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase	physical	1	1	1	Affinity Capture-RNA
YEL073C	YEL073C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TRM1	YDR120C	tRNA methyltransferase	physical	1	1	1	Affinity Capture-RNA
UBC13	YDR092W	E2 ubiquitin-conjugating enzyme	physical	1	1	1	Affinity Capture-RNA
PUS4	YNL292W	Pseudouridine synthase	physical	1	1	1	Affinity Capture-RNA
YGR111W	YGR111W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NTG1	YAL015C	DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase	physical	1	1	1	Affinity Capture-RNA
SET2	YJL168C	Histone methyltransferase with a role in transcriptional elongation	physical	1	1	1	Affinity Capture-RNA
SEC24	YIL109C	Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat	physical	1	1	1	Affinity Capture-RNA
PIH1	YHR034C	Component of the conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1)	physical	1	1	1	Affinity Capture-RNA
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	physical	1	1	1	Affinity Capture-RNA
UGP1	YKL035W	UDP-glucose pyrophosphorylase (UGPase)	genetic	1	1	1	Positive Genetic
RAD28	YDR030C	Protein involved in DNA repair	physical	1	1	1	Affinity Capture-RNA
RRG7	YOR305W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YIL161W	YIL161W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TFG2	YGR005C	TFIIF (Transcription Factor II) middle subunit	physical	1	1	1	Affinity Capture-RNA
PIL1	YGR086C	Eisosome core component	physical	1	1	1	Affinity Capture-RNA
UGA4	YDL210W	GABA (gamma-aminobutyrate) permease	physical	1	1	1	Affinity Capture-RNA
SAL1	YNL083W	ADP/ATP transporter	physical	1	1	1	Affinity Capture-RNA
RSM18	YER050C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
TRP2	YER090W	Anthranilate synthase	physical	1	1	1	Affinity Capture-RNA
SWI4	YER111C	DNA binding component of the SBF complex (Swi4p-Swi6p)	physical	1	1	1	Affinity Capture-RNA
ROG3	YFR022W	Alpha-arrestin involved in ubiquitin-dependent endocytosis	physical	1	1	1	Affinity Capture-RNA
YOR019W	YOR019W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YNR021W	YNR021W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PMT7	YDR307W	Putative protein mannosyltransferase similar to Pmt1p	physical	1	1	1	Affinity Capture-RNA
YBL028C	YBL028C	Protein of unknown function that may interact with ribosomes	physical	1	1	1	Affinity Capture-RNA
SLO1	YER180C-A	Protein interacting with Arl3p	physical	1	1	1	Affinity Capture-RNA
POP6	YGR030C	Subunit of RNase MRP, nuclear RNase P and telomerase	physical	1	1	1	Affinity Capture-RNA
VPH2	YKL119C	Integral membrane protein required for V-ATPase function	physical	1	1	1	Affinity Capture-RNA
YBR062C	YBR062C	Protein of unknown function that interacts with Msb2p	physical	1	1	1	Affinity Capture-RNA
PEX12	YMR026C	C3HC4-type RING-finger peroxin and E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
UBP1	YDL122W	Ubiquitin-specific protease	physical	1	1	1	Affinity Capture-RNA
YCL048W-A	YCL048W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YOL014W	YOL014W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PIR5	YJL160C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SBH1	YER087C-B	Beta subunit of Sec61p ER translocation complex (Sec61p-Sss1p-Sbh1p)	physical	1	1	1	Affinity Capture-RNA
PEX15	YOL044W	Tail-anchored type II integral peroxisomal membrane protein	physical	1	1	1	Affinity Capture-RNA
PSY2	YNL201C	Subunit of protein phosphatase PP4 complex	physical	1	1	1	Affinity Capture-RNA
RTT109	YLL002W	Histone acetyltransferase	physical	1	1	1	Affinity Capture-RNA
PPE1	YHR075C	Protein with carboxyl methyl esterase activity	physical	1	1	1	Affinity Capture-RNA
RAD57	YDR004W	Protein that stimulates strand exchange	physical	1	1	1	Affinity Capture-RNA
PGM2	YMR105C	Phosphoglucomutase	physical	1	1	1	Affinity Capture-RNA
YPP1	YGR198W	Cargo-transport protein involved in endocytosis	physical	1	1	1	Affinity Capture-RNA
NNF2	YGR089W	Protein that exhibits physical and genetic interactions with Rpb8p	physical	1	1	1	Affinity Capture-RNA
PIK1	YNL267W	Phosphatidylinositol 4-kinase	physical	1	1	1	Affinity Capture-RNA
URA5	YML106W	Major orotate phosphoribosyltransferase (OPRTase) isozyme	physical	1	1	1	Affinity Capture-RNA
SAC6	YDR129C	Fimbrin, actin-bundling protein	physical	1	1	1	Affinity Capture-RNA
RPS4A	YJR145C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
URE2	YNL229C	Nitrogen catabolite repression transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
TOS3	YGL179C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
PCP1	YGR101W	Mitochondrial serine protease	physical	1	1	1	Affinity Capture-RNA
VPS62	YGR141W	Vacuolar protein sorting (VPS) protein	physical	1	1	1	Affinity Capture-RNA
PGM1	YKL127W	Phosphoglucomutase, minor isoform	physical	1	1	1	Affinity Capture-RNA
PXA1	YPL147W	Subunit of heterodimeric peroxisomal ABC transport complex, with Pxa2p	physical	1	1	1	Affinity Capture-RNA
RAD18	YCR066W	E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
QRI1	YDL103C	UDP-N-acetylglucosamine pyrophosphorylase	physical	1	1	1	Affinity Capture-RNA
QRI1	YDL103C	UDP-N-acetylglucosamine pyrophosphorylase	genetic	1	1	1	Negative Genetic
UBA1	YKL210W	Ubiquitin activating enzyme (E1)	physical	1	1	1	Affinity Capture-RNA
YLR001C	YLR001C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PEX32	YBR168W	Peroxisomal integral membrane protein	physical	1	1	1	Affinity Capture-RNA
SPT20	YOL148C	Subunit of the SAGA transcriptional regulatory complex	physical	1	1	1	Affinity Capture-RNA
YMR160W	YMR160W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RRT13	YER066W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
STP4	YDL048C	Protein containing a Kruppel-type zinc-finger domain	physical	1	1	1	Affinity Capture-RNA
TOS2	YGR221C	Protein involved in localization of Cdc24p to the site of bud growth	physical	1	1	1	Affinity Capture-RNA
NOP19	YGR251W	Ribosome biogenesis factor	physical	1	1	1	Affinity Capture-RNA
PYK2	YOR347C	Pyruvate kinase	physical	1	1	1	Affinity Capture-RNA
YCR090C	YCR090C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RIA1	YNL163C	Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis	physical	1	1	1	Affinity Capture-RNA
STU1	YBL034C	Microtubule plus-end-tracking non-motor protein	physical	1	1	1	Affinity Capture-RNA
SWP1	YMR149W	Delta subunit of the oligosaccharyl transferase glycoprotein complex	physical	1	1	1	Affinity Capture-RNA
SHM1	YBR263W	Mitochondrial serine hydroxymethyltransferase	physical	1	1	1	Affinity Capture-RNA
VPS9	YML097C	Guanine nucleotide exchange factor (GEF) and ubiquitin receptor	physical	1	1	1	Affinity Capture-RNA
PUF4	YGL014W	Member of the PUF protein family	physical	1	1	1	Affinity Capture-RNA
RRN6	YBL014C	Component of the core factor (CF) rDNA transcription factor complex	physical	1	1	1	Affinity Capture-RNA
SET5	YHR207C	Methyltransferase involved in methylation of histone H4 Lys5, -8, -12	physical	1	1	1	Affinity Capture-RNA
TOF1	YNL273W	Subunit of a replication-pausing checkpoint complex	physical	1	1	1	Affinity Capture-RNA
SPO71	YDR104C	Meiosis-specific protein required for prospore membrane morphogenesis	physical	1	1	1	Affinity Capture-RNA
PCL10	YGL134W	Pho85p cyclin	physical	1	1	1	Affinity Capture-RNA
SRN2	YLR119W	Component of the ESCRT-I complex	physical	1	1	1	Affinity Capture-RNA
UBP2	YOR124C	Ubiquitin-specific protease	physical	1	1	1	Affinity Capture-RNA
XRS2	YDR369C	FHA domain-containing component of the Mre11 complex	physical	1	1	1	Affinity Capture-RNA
UBP5	YER144C	Putative ubiquitin-specific protease	physical	1	1	1	Affinity Capture-RNA
PER33	YLR064W	Protein that localizes to the endoplasmic reticulum	physical	1	1	1	Affinity Capture-RNA
ORC6	YHR118C	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Affinity Capture-RNA
NST1	YNL091W	Translational inhibitor and suppressor of proteasome-assembly defects	physical	1	1	1	Affinity Capture-RNA
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	physical	1	1	1	Affinity Capture-RNA
SIN3	YOL004W	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	genetic	1	1	1	Negative Genetic
YOR131C	YOR131C	Putative haloacid dehalogenase-like hydrolase	physical	1	1	1	Affinity Capture-RNA
SPN1	YPR133C	Protein involved in RNA polymerase II transcription	physical	1	1	1	Affinity Capture-RNA
RRI2	YOL117W	Subunit of the COP9 signalosome (CSN) complex	physical	1	1	1	Affinity Capture-RNA
RSC30	YHR056C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
SLZ1	YNL196C	Sporulation-specific protein with a leucine zipper motif	physical	1	1	1	Affinity Capture-RNA
RRP7	YCL031C	Essential protein involved in rRNA processing and ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
YMR315W	YMR315W	Protein with NADP(H) oxidoreductase activity	physical	1	1	1	Affinity Capture-RNA
ZRT2	YLR130C	Low-affinity zinc transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
SWI6	YLR182W	Transcription cofactor	physical	1	1	1	Affinity Capture-RNA
SWI6	YLR182W	Transcription cofactor	genetic	1	1	1	Negative Genetic
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	physical	1	1	1	Affinity Capture-RNA
POB3	YML069W	Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)	genetic	1	1	1	Negative Genetic
RKM3	YBR030W	Ribosomal lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
PRK1	YIL095W	Ser/Thr protein kinase	physical	1	1	1	Affinity Capture-RNA
RMP1	YLR145W	Subunit of RNase MRP	physical	1	1	1	Affinity Capture-RNA
YRF1-1	YDR545W	Helicase encoded by the Y' element of subtelomeric regions	physical	1	1	1	Affinity Capture-RNA
RSP5	YER125W	NEDD4 family E3 ubiquitin ligase	physical	1	1	1	Affinity Capture-RNA
SIR1	YKR101W	Protein involved in silencing at mating-type loci HML and HMR	physical	1	1	1	Affinity Capture-RNA
PET111	YMR257C	Mitochondrial translational activator specific for the COX2 mRNA	physical	1	1	1	Affinity Capture-RNA
NSE5	YML023C	Component of the SMC5-SMC6 complex	physical	1	1	1	Affinity Capture-RNA
NSE5	YML023C	Component of the SMC5-SMC6 complex	genetic	1	1	1	Negative Genetic
STV1	YMR054W	Subunit a of the vacuolar-ATPase V0 domain	physical	1	1	1	Affinity Capture-RNA
YNR064C	YNR064C	Epoxide hydrolase	physical	1	1	1	Affinity Capture-RNA
RPN4	YDL020C	Transcription factor that stimulates expression of proteasome genes	physical	1	1	1	Affinity Capture-RNA
RPB7	YDR404C	RNA polymerase II subunit B16	physical	1	1	1	Affinity Capture-RNA
RPB7	YDR404C	RNA polymerase II subunit B16	genetic	1	1	1	Negative Genetic
SER3	YER081W	3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase	physical	1	1	1	Affinity Capture-RNA
TGL5	YOR081C	Bifunctional triacylglycerol lipase and LPA acyltransferase	physical	1	1	1	Affinity Capture-RNA
SPS4	YOR313C	Protein whose expression is induced during sporulation	physical	1	1	1	Affinity Capture-RNA
SEC14	YMR079W	Phosphatidylinositol/phosphatidylcholine transfer protein	physical	1	1	1	Affinity Capture-RNA
YKR018C	YKR018C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
USV1	YPL230W	Putative transcription factor containing a C2H2 zinc finger	physical	1	1	1	Affinity Capture-RNA
UME6	YDR207C	Rpd3L histone deacetylase complex subunit	physical	1	1	1	Affinity Capture-RNA
YBP2	YGL060W	Central kinetochore associated protein	physical	1	1	1	Affinity Capture-RNA
PHA2	YNL316C	Prephenate dehydratase	physical	1	1	1	Affinity Capture-RNA
RRN10	YBL025W	Protein involved in promoting high level transcription of rDNA	physical	1	1	1	Affinity Capture-RNA
RNH201	YNL072W	Ribonuclease H2 catalytic subunit	physical	1	1	1	Affinity Capture-RNA
PLP1	YDR183W	Protein that interacts with CCT (chaperonin containing TCP-1) complex	physical	1	1	1	Affinity Capture-RNA
YJR012C	YJR012C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RCO1	YMR075W	Essential component of the Rpd3S histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
YPT10	YBR264C	Rab family GTP-binding protein	physical	1	1	1	Affinity Capture-RNA
TAD2	YJL035C	Subunit of tRNA-specific adenosine-34 deaminase	physical	1	1	1	Affinity Capture-RNA
NHX1	YDR456W	Na+/H+ and K+/H+ exchanger	physical	1	1	1	Affinity Capture-RNA
YAK1	YJL141C	Serine-threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
SKI6	YGR195W	Exosome non-catalytic core component	physical	1	1	1	Affinity Capture-RNA
POC4	YPL144W	Component of a heterodimeric Poc4p-Irc25p chaperone	physical	1	1	1	Affinity Capture-RNA
SRF1	YDL133W	Regulator of phospholipase D (Spo14p)	physical	1	1	1	Affinity Capture-RNA
TOP3	YLR234W	DNA Topoisomerase III	physical	1	1	1	Affinity Capture-RNA
YNL165W	YNL165W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PET494	YNR045W	Mitochondrial translational activator specific for the COX3 mRNA	physical	1	1	1	Affinity Capture-RNA
VPS28	YPL065W	Component of the ESCRT-I complex	physical	1	1	1	Affinity Capture-RNA
SEC22	YLR268W	R-SNARE protein	physical	1	1	1	Affinity Capture-RNA
PDR10	YOR328W	ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-RNA
XKS1	YGR194C	Xylulokinase	physical	1	1	1	Affinity Capture-RNA
RRT8	YOL048C	Protein involved in spore wall assembly	physical	1	1	1	Affinity Capture-RNA
SEC66	YBR171W	Non-essential subunit of Sec63 complex	physical	1	1	1	Affinity Capture-RNA
YLR264C-A	YLR264C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VHS1	YDR247W	Cytoplasmic serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
YOR238W	YOR238W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VAB2	YEL005C	Subunit of the BLOC-1 complex involved in endosomal maturation	physical	1	1	1	Affinity Capture-RNA
SDS22	YKL193C	Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p	physical	1	1	1	Affinity Capture-RNA
VAS1	YGR094W	Mitochondrial and cytoplasmic valyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
TRE1	YPL176C	Transferrin receptor-like protein	physical	1	1	1	Affinity Capture-RNA
RAD7	YJR052W	Nucleotide excision repair (NER) protein	physical	1	1	1	Affinity Capture-RNA
YLR031W	YLR031W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SAM37	YMR060C	Component of the Sorting and Assembly Machinery (SAM) complex	physical	1	1	1	Affinity Capture-RNA
SSK2	YNR031C	MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway	physical	1	1	1	Affinity Capture-RNA
SPE3	YPR069C	Spermidine synthase	physical	1	1	1	Affinity Capture-RNA
PPT1	YGR123C	Protein serine/threonine phosphatase	physical	1	1	1	Affinity Capture-RNA
XYL2	YLR070C	Xylitol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
SEG1	YMR086W	Component of eisosome required for proper eisosome assembly	physical	1	1	1	Affinity Capture-RNA
RBH1	YJL181W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YCP4	YCR004C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YKL068W-A	YKL068W-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TMS1	YDR105C	Vacuolar membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SHE4	YOR035C	Protein containing a UCS (UNC-45/CRO1/SHE4) domain	physical	1	1	1	Affinity Capture-RNA
RSC1	YGR056W	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
YMR027W	YMR027W	A metal-dependent phosphatase, part of the DUF89 protein family	physical	1	1	1	Affinity Capture-RNA
SAN1	YDR143C	Ubiquitin-protein ligase	physical	1	1	1	Affinity Capture-RNA
NIF3	YGL221C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YER152C	YER152C	Protein with 2-aminoadipate transaminase activity	physical	1	1	1	Affinity Capture-RNA
OTU1	YFL044C	Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p	physical	1	1	1	Affinity Capture-RNA
TAF10	YDR167W	Subunit (145 kDa) of TFIID and SAGA complexes	physical	1	1	1	Affinity Capture-RNA
SNF7	YLR025W	One of four subunits of the ESCRT-III complex	physical	1	1	1	Affinity Capture-RNA
OXA1	YER154W	Mitochondrial inner membrane insertase	physical	1	1	1	Affinity Capture-RNA
SRT1	YMR101C	Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1	physical	1	1	1	Affinity Capture-RNA
VTC3	YPL019C	Regulatory subunit of the vacuolar transporter chaperone (VTC) complex	physical	1	1	1	Affinity Capture-RNA
TIM18	YOR297C	Component of the mitochondrial TIM22 complex	physical	1	1	1	Affinity Capture-RNA
SSL2	YIL143C	Component of RNA polymerase transcription factor TFIIH holoenzyme	physical	1	1	1	Affinity Capture-RNA
YDR034C-C	YDR034C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol	physical	1	1	1	Affinity Capture-RNA
YNL144C	YNL144C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RXT2	YBR095C	Component of the histone deacetylase Rpd3L complex	physical	1	1	1	Affinity Capture-RNA
SLP1	YOR154W	Glycosylated integral ER membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
STP3	YLR375W	Zinc-finger protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TAD1	YGL243W	tRNA-specific adenosine deaminase	physical	1	1	1	Affinity Capture-RNA
OLA1	YBR025C	P-loop ATPase with similarity to human OLA1 and bacterial YchF	physical	1	1	1	Affinity Capture-RNA
YCS4	YLR272C	Subunit of the condensin complex	physical	1	1	1	Affinity Capture-RNA
YJL043W	YJL043W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YHM2	YMR241W	Citrate and oxoglutarate carrier protein	physical	1	1	1	Affinity Capture-RNA
YHM2	YMR241W	Citrate and oxoglutarate carrier protein	genetic	1	1	1	Negative Genetic
VAC7	YNL054W	Integral vacuolar membrane protein	physical	1	1	1	Affinity Capture-RNA
PRR1	YKL116C	Serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
RSM23	YGL129C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
SIW14	YNL032W	Inositol phosphatase involved in inositol pyrophosphate metabolism	physical	1	1	1	Affinity Capture-RNA
SIW14	YNL032W	Inositol phosphatase involved in inositol pyrophosphate metabolism	genetic	1	1	1	Positive Genetic
TOM6	YOR045W	Component of the TOM (translocase of outer membrane) complex	physical	1	1	1	Affinity Capture-RNA
YAP3	YHL009C	Basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
UPF3	YGR072W	Component of the nonsense-mediated mRNA decay (NMD) pathway	physical	1	1	1	Affinity Capture-RNA
PIS1	YPR113W	Phosphatidylinositol synthase	physical	1	1	1	Affinity Capture-RNA
TRF5	YNL299W	Non-canonical poly(A) polymerase	physical	1	1	1	Affinity Capture-RNA
YJR149W	YJR149W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPC110	YDR356W	Inner plaque spindle pole body (SPB) component	physical	1	1	1	Affinity Capture-RNA
YER186C	YER186C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ULP2	YIL031W	Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins	physical	1	1	1	Affinity Capture-RNA
RAX2	YLR084C	Protein required for the maintenance of bud site selection	physical	1	1	1	Affinity Capture-RNA
PDR15	YDR406W	Plasma membrane ATP binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-RNA
TDA11	YHR159W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPL35B	YDL136W	Ribosomal 60S subunit protein L35B	physical	1	1	1	Affinity Capture-RNA
RER1	YCL001W	Protein involved in retention of membrane proteins	physical	1	1	1	Affinity Capture-RNA
TFC7	YOR110W	RNA pol III transcription initiation factor complex (TFIIIC) subunit	physical	1	1	1	Affinity Capture-RNA
YKL091C	YKL091C	Putative phosphatidylinositol/phosphatidylcholine transfer protein	physical	1	1	1	Affinity Capture-RNA
SSF2	YDR312W	Protein required for ribosomal large subunit maturation	physical	1	1	1	Affinity Capture-RNA
PMI40	YER003C	Mannose-6-phosphate isomerase	physical	1	1	1	Affinity Capture-RNA
YJR056C	YJR056C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YPL077C	YPL077C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SNX41	YDR425W	Sorting nexin	physical	1	1	1	Affinity Capture-RNA
PIG2	YIL045W	Putative type-1 protein phosphatase targeting subunit	physical	1	1	1	Affinity Capture-RNA
PRP39	YML046W	U1 snRNP protein involved in splicing	physical	1	1	1	Affinity Capture-RNA
PDR16	YNL231C	Phosphatidylinositol transfer protein (PITP)	physical	1	1	1	Affinity Capture-RNA
RMD1	YDL001W	Cytoplasmic protein required for sporulation	physical	1	1	1	Affinity Capture-RNA
STE20	YHL007C	Cdc42p-activated signal transducing kinase	physical	1	1	1	Affinity Capture-RNA
RET1	YOR207C	Second-largest subunit of RNA polymerase III	physical	1	1	1	Affinity Capture-RNA
PUF2	YPR042C	PUF family mRNA-binding protein	physical	1	1	1	Affinity Capture-RNA
UBP15	YMR304W	Ubiquitin-specific protease involved in protein deubiquitination	physical	1	1	1	Affinity Capture-RNA
YDR124W	YDR124W	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RIB3	YDR487C	3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase)	physical	1	1	1	Affinity Capture-RNA
YAP6	YDR259C	Basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
STT3	YGL022W	Catalytic subunit of the oligosaccharyltransferase complex of the ER l	physical	1	1	1	Affinity Capture-RNA
SLX9	YGR081C	Protein required for pre-rRNA processing	physical	1	1	1	Affinity Capture-RNA
PEP1	YBL017C	Type I transmembrane sorting receptor for multiple vacuolar hydrolases	physical	1	1	1	Affinity Capture-RNA
TAX4	YJL083W	EH domain-containing protein	physical	1	1	1	Affinity Capture-RNA
UCC1	YLR224W	F-box protein and component of SCF ubiquitin ligase complexes	physical	1	1	1	Affinity Capture-RNA
SNO2	YNL334C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YDL199C	YDL199C	Putative transporter	physical	1	1	1	Affinity Capture-RNA
THI72	YOR192C	Transporter of thiamine or related compound	physical	1	1	1	Affinity Capture-RNA
RLP24	YLR009W	Essential protein required for ribosomal large subunit biogenesis	physical	1	1	1	Affinity Capture-RNA
QCR2	YPR191W	Subunit 2 of ubiquinol cytochrome-c reductase (Complex III)	physical	1	1	1	Affinity Capture-RNA
SHU2	YDR078C	Component of Shu complex (aka PCSS complex)	physical	1	1	1	Affinity Capture-RNA
SAS3	YBL052C	Histone acetyltransferase catalytic subunit of NuA3 complex	physical	1	1	1	Affinity Capture-RNA
VPS75	YNL246W	NAP family histone chaperone	physical	1	1	1	Affinity Capture-RNA
TVP38	YKR088C	Integral membrane protein	physical	1	1	1	Affinity Capture-RNA
RPS1B	YML063W	Ribosomal protein of the small (40S) subunit	physical	1	1	1	Affinity Capture-RNA
TRS120	YDR407C	Component of transport protein particle (TRAPP) complex II	physical	1	1	1	Affinity Capture-RNA
ORC4	YPR162C	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Affinity Capture-RNA
ORC4	YPR162C	Subunit of the origin recognition complex (ORC)	genetic	1	1	1	Negative Genetic
YCR102C	YCR102C	Putative quinone oxidoreductase	physical	1	1	1	Affinity Capture-RNA
TLG2	YOL018C	Syntaxin-like t-SNARE	physical	1	1	1	Affinity Capture-RNA
TPT1	YOL102C	tRNA 2'-phosphotransferase that catalyzes final step in tRNA splicing	physical	1	1	1	Affinity Capture-RNA
TDP1	YBR223C	Tyrosyl-DNA phosphodiesterase I	physical	1	1	1	Affinity Capture-RNA
RSA1	YPL193W	Protein involved in the assembly of 60S ribosomal subunits	physical	1	1	1	Affinity Capture-RNA
URA3	YEL021W	Orotidine-5'-phosphate (OMP) decarboxylase	physical	1	1	1	Affinity Capture-RNA
SAR1	YPL218W	ARF family GTPase	physical	1	1	1	Affinity Capture-RNA
RRI1	YDL216C	Catalytic subunit of the COP9 signalosome (CSN) complex	physical	1	1	1	Affinity Capture-RNA
POR1	YNL055C	Mitochondrial porin (voltage-dependent anion channel)	physical	1	1	1	Affinity Capture-RNA
SAP190	YKR028W	Protein that forms a complex with the Sit4p protein phosphatase	physical	1	1	1	Affinity Capture-RNA
PLB1	YMR008C	Phospholipase B (lysophospholipase) involved in lipid metabolism	physical	1	1	1	Affinity Capture-RNA
NAT1	YDL040C	Subunit of protein N-terminal acetyltransferase NatA	physical	1	1	1	Affinity Capture-RNA
RGI2	YIL057C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RAD52	YML032C	Protein involved in homologous recombination	physical	1	1	1	Affinity Capture-RNA
VPS3	YDR495C	Component of CORVET membrane tethering complex	physical	1	1	1	Affinity Capture-RNA
NAM7	YMR080C	ATP-dependent RNA helicase of the SFI superfamily	physical	1	1	1	Affinity Capture-RNA
RIM11	YMR139W	Protein kinase	physical	1	1	1	Affinity Capture-RNA
RGM1	YMR182C	Putative zinc finger DNA binding transcription factor	physical	1	1	1	Affinity Capture-RNA
RIX1	YHR197W	Component of the Rix1 complex and possibly pre-replicative complexes	physical	1	1	1	Affinity Capture-RNA
VPS53	YJL029C	Component of the GARP (Golgi-associated retrograde protein) complex	physical	1	1	1	Affinity Capture-RNA
YNL035C	YNL035C	Nuclear protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YCF1	YDR135C	Vacuolar glutathione S-conjugate transporter	physical	1	1	1	Affinity Capture-RNA
SRX1	YKL086W	Sulfiredoxin	physical	1	1	1	Affinity Capture-RNA
YOL159C-A	YOL159C-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NUM1	YDR150W	Protein required for nuclear migration	physical	1	1	1	Affinity Capture-RNA
PES4	YFR023W	Poly(A) binding protein, suppressor of DNA polymerase epsilon mutation	physical	1	1	1	Affinity Capture-RNA
PRI2	YKL045W	Subunit of DNA primase	physical	1	1	1	Affinity Capture-RNA
NPL4	YBR170C	Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase	physical	1	1	1	Affinity Capture-RNA
RSC3	YDR303C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
YIL152W	YIL152W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YAT2	YER024W	Carnitine acetyltransferase	physical	1	1	1	Affinity Capture-RNA
RPN9	YDR427W	Non-ATPase regulatory subunit of the 26S proteasome	physical	1	1	1	Affinity Capture-RNA
PET18	YCR020C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RPS27B	YHR021C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
TMA108	YIL137C	Ribosome-associated, nascent chain binding factor	physical	1	1	1	Affinity Capture-RNA
YCR101C	YCR101C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
TEL2	YGR099W	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
YHR050W-A	YHR050W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PAC1	YOR269W	Regulator of dynein, involved in intracellular transport	physical	1	1	1	Affinity Capture-RNA
YMC1	YPR058W	Secondary mitochondrial inner membrane glycine transporter	physical	1	1	1	Affinity Capture-RNA
NMD5	YJR132W	Karyopherin	physical	1	1	1	Affinity Capture-RNA
PEP7	YDR323C	Adaptor protein involved in vesicle-mediated vacuolar protein sorting	physical	1	1	1	Affinity Capture-RNA
YHL012W	YHL012W	Putative UTP glucose-1-phosphate uridylyltransferase	physical	1	1	1	Affinity Capture-RNA
UTP23	YOR004W	Component of the small subunit processome	physical	1	1	1	Affinity Capture-RNA
YEF1	YEL041W	ATP-NADH kinase	physical	1	1	1	Affinity Capture-RNA
RSC58	YLR033W	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
SEC5	YDR166C	Essential 107kDa subunit of the exocyst complex	physical	1	1	1	Affinity Capture-RNA
UBC6	YER100W	Ubiquitin-conjugating enzyme involved in ERAD	physical	1	1	1	Affinity Capture-RNA
VPH1	YOR270C	Subunit a of the vacuolar-ATPase V0 domain	physical	1	1	1	Affinity Capture-RNA
PDR18	YNR070W	Transporter of the ATP-binding cassette (ABC) family	physical	1	1	1	Affinity Capture-RNA
ORC2	YBR060C	Subunit of the origin recognition complex (ORC)	physical	1	1	1	Affinity Capture-RNA
PTI1	YGR156W	Essential component of CPF (cleavage and polyadenylation factor)	physical	1	1	1	Affinity Capture-RNA
YVC1	YOR087W	Vacuolar cation channel	physical	1	1	1	Affinity Capture-RNA
VAR1	Q0140	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
TWF1	YGR080W	Twinfilin	physical	1	1	1	Affinity Capture-RNA
SLD7	YOR060C	Protein with a role in chromosomal DNA replication	physical	1	1	1	Affinity Capture-RNA
RMA1	YKL132C	Putative dihydrofolate synthetase	physical	1	1	1	Affinity Capture-RNA
RDI1	YDL135C	Rho GDP dissociation inhibitor	physical	1	1	1	Affinity Capture-RNA
OSW1	YOR255W	Protein involved in sporulation	physical	1	1	1	Affinity Capture-RNA
TPS1	YBR126C	Synthase subunit of trehalose-6-P synthase/phosphatase complex	physical	1	1	1	Affinity Capture-RNA
PHM7	YOL084W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
REC107	YJR021C	Protein involved in early stages of meiotic recombination	physical	1	1	1	Affinity Capture-RNA
SMY2	YBR172C	GYF domain protein	physical	1	1	1	Affinity Capture-RNA
TFA1	YKL028W	TFIIE large subunit	physical	1	1	1	Affinity Capture-RNA
RTP1	YMR185W	Protein required for the nuclear import and biogenesis of RNA pol II	physical	1	1	1	Affinity Capture-RNA
NAP1	YKR048C	Histone chaperone and assembly chaperone for Rps6a/b	physical	1	1	1	Affinity Capture-RNA
YCH1	YGR203W	Phosphatase with sequence similarity to Mih1p	physical	1	1	1	Affinity Capture-RNA
SEG2	YKL105C	Eisosome component	physical	1	1	1	Affinity Capture-RNA
SRP40	YKR092C	Nucleolar serine-rich protein	physical	1	1	1	Affinity Capture-RNA
REA1	YLR106C	Huge dynein-related AAA-type ATPase (midasin)	physical	1	1	1	Affinity Capture-RNA
RNA14	YMR061W	Component of the cleavage and polyadenylation factor I (CF I)	physical	1	1	1	Affinity Capture-RNA
PLC1	YPL268W	Phospholipase C	physical	1	1	1	Affinity Capture-RNA
TAZ1	YPR140W	Lyso-phosphatidylcholine acyltransferase	physical	1	1	1	Affinity Capture-RNA
RGA1	YOR127W	GTPase-activating protein for polarity-regulator Cdc42p (RhoGAP)	physical	1	1	1	Affinity Capture-RNA
YDJ1	YNL064C	Type I HSP40 co-chaperone	physical	1	1	1	Affinity Capture-RNA
TMA23	YMR269W	Nucleolar protein implicated in ribosome biogenesis	physical	1	1	1	Affinity Capture-RNA
SAM4	YPL273W	S-adenosylmethionine-homocysteine methyltransferase	physical	1	1	1	Affinity Capture-RNA
ZIP2	YGL249W	Meiosis-specific protein	physical	1	1	1	Affinity Capture-RNA
YPL257W	YPL257W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SRS2	YJL092W	DNA helicase and DNA-dependent ATPase	physical	1	1	1	Affinity Capture-RNA
NET1	YJL076W	Core subunit of the RENT complex	physical	1	1	1	Affinity Capture-RNA
TFB2	YPL122C	Subunit of TFIIH and nucleotide excision repair factor 3 complexes	physical	1	1	1	Affinity Capture-RNA
UTP10	YJL109C	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
PXP1	YEL020C	Peroxisomal matrix protein	physical	1	1	1	Affinity Capture-RNA
YLR046C	YLR046C	Putative membrane protein	physical	1	1	1	Affinity Capture-RNA
RAD33	YML011C	Protein involved in nucleotide excision repair	physical	1	1	1	Affinity Capture-RNA
YPL216W	YPL216W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RQC2	YPL009C	Component of the Ribosome Quality Control (RQC) complex	physical	1	1	1	Affinity Capture-RNA
RPL6B	YLR448W	Ribosomal 60S subunit protein L6B	physical	1	1	1	Affinity Capture-RNA
STB3	YDR169C	Ribosomal RNA processing element (RRPE)-binding protein	physical	1	1	1	Affinity Capture-RNA
YDR444W	YDR444W	Putative hydrolase acting on ester bonds	physical	1	1	1	Affinity Capture-RNA
UTP4	YDR324C	Subunit of U3-containing 90S preribosome and SSU processome complexes	physical	1	1	1	Affinity Capture-RNA
PAN2	YGL094C	Catalytic subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex	physical	1	1	1	Affinity Capture-RNA
SNQ2	YDR011W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-RNA
YFH7	YFR007W	Putative kinase with similarity to the PRK/URK/PANK kinase subfamily	physical	1	1	1	Affinity Capture-RNA
UFD4	YKL010C	Ubiquitin-protein ligase (E3)	physical	1	1	1	Affinity Capture-RNA
TMT1	YER175C	Trans-aconitate methyltransferase	physical	1	1	1	Affinity Capture-RNA
UBR1	YGR184C	E3 ubiquitin ligase (N-recognin)	physical	1	1	1	Affinity Capture-RNA
TAT2	YOL020W	High affinity tryptophan and tyrosine permease	physical	1	1	1	Affinity Capture-RNA
PRO3	YER023W	Delta 1-pyrroline-5-carboxylate reductase	physical	1	1	1	Affinity Capture-RNA
YSP2	YDR326C	Sterol-binding protein	physical	1	1	1	Affinity Capture-RNA
YDL085C-A	YDL085C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
NMT1	YLR195C	N-myristoyl transferase	physical	1	1	1	Affinity Capture-RNA
TAL1	YLR354C	Transaldolase, enzyme in the non-oxidative pentose phosphate pathway	physical	1	1	1	Affinity Capture-RNA
RCK2	YLR248W	Protein kinase involved in response to oxidative and osmotic stress	physical	1	1	1	Affinity Capture-RNA
SAE2	YGL175C	Endonuclease required for telomere elongation	physical	1	1	1	Affinity Capture-RNA
YMR209C	YMR209C	Putative S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
UPS3	YDR185C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SRB2	YHR041C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
SRB2	YHR041C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
ROM1	YGR070W	Guanine nucleotide exchange factor (GEF) for Rho1p	physical	1	1	1	Affinity Capture-RNA
YJL107C	YJL107C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PPZ1	YML016C	Serine/threonine protein phosphatase Z, isoform of Ppz2p	physical	1	1	1	Affinity Capture-RNA
UTP13	YLR222C	Nucleolar protein	physical	1	1	1	Affinity Capture-RNA
YDR341C	YDR341C	Arginyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
SSK22	YCR073C	MAP kinase kinase kinase of HOG1 mitogen-activated signaling pathway	physical	1	1	1	Affinity Capture-RNA
SDT1	YGL224C	Pyrimidine nucleotidase	physical	1	1	1	Affinity Capture-RNA
RPL1B	YGL135W	Ribosomal 60S subunit protein L1B	physical	1	1	1	Affinity Capture-RNA
UBP13	YBL067C	Ubiquitin-specific protease that cleaves Ub-protein fusions	physical	1	1	1	Affinity Capture-RNA
NAT5	YOR253W	Subunit of protein N-terminal acetyltransferase NatA	physical	1	1	1	Affinity Capture-RNA
NFG1	YLR042C	Cell wall protein of unknown function	physical	1	1	1	Affinity Capture-RNA
RFC1	YOR217W	Subunit of heteropentameric Replication factor C (RF-C)	physical	1	1	1	Affinity Capture-RNA
YCL001W-B	YCL001W-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SSA3	YBL075C	ATPase involved in protein folding and the response to stress	physical	1	1	1	Affinity Capture-RNA
RRT14	YIL127C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YCR024C-B	YCR024C-B	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PPX1	YHR201C	Exopolyphosphatase	physical	1	1	1	Affinity Capture-RNA
PSK1	YAL017W	PAS domain-containing serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
YCR043C	YCR043C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ROF1	YHR177W	Putative transcription factor containing a WOPR domain	physical	1	1	1	Affinity Capture-RNA
PHO8	YDR481C	Repressible vacuolar alkaline phosphatase	physical	1	1	1	Affinity Capture-RNA
TAT1	YBR069C	Amino acid transporter for valine, leucine, isoleucine, and tyrosine	physical	1	1	1	Affinity Capture-RNA
VPS70	YJR126C	Protein of unknown function involved in vacuolar protein sorting	physical	1	1	1	Affinity Capture-RNA
TDA3	YHR009C	Putative oxidoreductase involved in late endosome to Golgi transport	physical	1	1	1	Affinity Capture-RNA
YOL075C	YOL075C	Putative ABC transporter	physical	1	1	1	Affinity Capture-RNA
SFK1	YKL051W	Protein that regulates phospholipid asymmetry at plasma membrane	physical	1	1	1	Affinity Capture-RNA
RTT106	YNL206C	Histone chaperone	physical	1	1	1	Affinity Capture-RNA
SAM35	YHR083W	Component of the sorting and assembly machinery (SAM) complex	physical	1	1	1	Affinity Capture-RNA
YJL163C	YJL163C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
PBA1	YLR199C	Protein involved in 20S proteasome assembly	physical	1	1	1	Affinity Capture-RNA
YOR097C	YOR097C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
SPO21	YOL091W	Component of the meiotic outer plaque of the spindle pole body	physical	1	1	1	Affinity Capture-RNA
YER079W	YER079W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YAP1802	YGR241C	Protein of the AP180 family, involved in clathrin cage assembly	physical	1	1	1	Affinity Capture-RNA
SED5	YLR026C	cis-Golgi t-SNARE syntaxin	physical	1	1	1	Affinity Capture-RNA
REV1	YOR346W	Deoxycytidyl transferase	physical	1	1	1	Affinity Capture-RNA
PEP3	YLR148W	Component of CORVET membrane tethering complex	physical	1	1	1	Affinity Capture-RNA
POP5	YAL033W	Subunit of both RNase MRP and nuclear RNase P	physical	1	1	1	Affinity Capture-RNA
POM33	YLL023C	Transmembrane nucleoporin	physical	1	1	1	Affinity Capture-RNA
TOK1	YJL093C	Outward-rectifier potassium channel of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
PDR5	YOR153W	Plasma membrane ATP-binding cassette (ABC) transporter	physical	1	1	1	Affinity Capture-RNA
TDA7	YNL176C	Cell cycle-regulated gene of unknown function	physical	1	1	1	Affinity Capture-RNA
SQS1	YNL224C	Protein that stimulates the ATPase and helicase activities of Prp43p	physical	1	1	1	Affinity Capture-RNA
ROM2	YLR371W	Guanine nucleotide exchange factor (GEF) for Rho1p and Rho2p	physical	1	1	1	Affinity Capture-RNA
RIB7	YBR153W	Diaminohydroxyphoshoribosylaminopyrimidine deaminase	physical	1	1	1	Affinity Capture-RNA
VPS33	YLR396C	ATP-binding protein that is a subunit of the HOPS and CORVET complexes	physical	1	1	1	Affinity Capture-RNA
YIL014C-A	YIL014C-A	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
VBA5	YKR105C	Plasma membrane protein of the Major Facilitator Superfamily (MFS)	physical	1	1	1	Affinity Capture-RNA
YDR239C	YDR239C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
YAP1	YML007W	Basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
THS1	YIL078W	Threonyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
ODC2	YOR222W	Mitochondrial inner membrane transporter	physical	1	1	1	Affinity Capture-RNA
SKI7	YOR076C	GTP-binding protein that couples the Ski complex and exosome	physical	1	1	1	Affinity Capture-RNA
POL2	YNL262W	Catalytic subunit of DNA polymerase (II) epsilon	physical	1	1	1	Affinity Capture-RNA
RBG2	YGR173W	Protein with a role in translation	physical	1	1	1	Affinity Capture-RNA
SRP21	YKL122C	Subunit of the signal recognition particle (SRP)	physical	1	1	1	Affinity Capture-RNA
NOP9	YJL010C	Essential subunit of U3-containing 90S preribosome	physical	1	1	1	Affinity Capture-RNA
UGO1	YDR470C	Outer membrane component of the mitochondrial fusion machinery	physical	1	1	1	Affinity Capture-RNA
PDC2	YDR081C	Transcription factor for thiamine-regulated genes	physical	1	1	1	Affinity Capture-RNA
UBP8	YMR223W	Ubiquitin-specific protease component of the SAGA acetylation complex	physical	1	1	1	Affinity Capture-RNA
NCE103	YNL036W	Carbonic anhydrase	physical	1	1	1	Affinity Capture-RNA
THP3	YPR045C	Protein that may have a role in transcription elongation	physical	1	1	1	Affinity Capture-RNA
SYF2	YGR129W	Member of the NineTeen Complex (NTC)	physical	1	1	1	Affinity Capture-RNA
TDH2	YJR009C	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2	physical	1	1	1	Affinity Capture-RNA
PXP2	YJR111C	Peroxisomal matrix protein with naturally active promoter	physical	1	1	1	Affinity Capture-RNA
TCB3	YML072C	Cortical ER protein involved in ER-plasma membrane tethering	physical	1	1	1	Affinity Capture-RNA
SEC26	YDR238C	Essential beta-coat protein of the COPI coatomer	physical	1	1	1	Affinity Capture-RNA
PEF1	YGR058W	Penta-EF-hand protein	physical	1	1	1	Affinity Capture-RNA
PTA1	YAL043C	Subunit of holo-CPF	physical	1	1	1	Affinity Capture-RNA
NBA1	YOL070C	Protein involved in axial bud site selection	physical	1	1	1	Affinity Capture-RNA
NEL1	YHR035W	Activator of Sar1p GTPase activity	physical	1	1	1	Affinity Capture-RNA
PRT1	YOR361C	eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3)	physical	1	1	1	Affinity Capture-RNA
SUP35	YDR172W	Translation termination factor eRF3	physical	1	1	1	Affinity Capture-RNA
SUP35	YDR172W	Translation termination factor eRF3	genetic	1	1	1	Negative Genetic
YMR187C	YMR187C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
UTP14	YML093W	Subunit of U3-containing Small Subunit (SSU) processome complex	physical	1	1	1	Affinity Capture-RNA
SMC4	YLR086W	Subunit of the condensin complex	physical	1	1	1	Affinity Capture-RNA
VMS1	YDR049W	Peptidyl-tRNA hydrolase that releases stalled peptides from ribosomes,	physical	1	1	1	Affinity Capture-RNA
Q0255	Q0255	Maturase-like protein	physical	1	1	1	Affinity Capture-RNA
RAP1	YNL216W	Essential DNA-binding transcription regulator that binds many loci	physical	1	1	1	Affinity Capture-RNA
RPL43A	YPR043W	Ribosomal 60S subunit protein L43A	physical	1	1	1	Affinity Capture-RNA
VMA8	YEL051W	Subunit D of the V1 peripheral membrane domain of V-ATPase	physical	1	1	1	Affinity Capture-RNA
RPL36A	YMR194W	Ribosomal 60S subunit protein L36A	physical	1	1	1	Affinity Capture-RNA
RPS25B	YLR333C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
UBP6	YFR010W	Ubiquitin-specific protease	physical	1	1	1	Affinity Capture-RNA
RGD3	YHR182W	GTPase activating protein (GAP) for Rho3p, involved in cell polarity g	physical	1	1	1	Affinity Capture-RNA
PCF11	YDR228C	mRNA 3' end processing factor	physical	1	1	1	Affinity Capture-RNA
PCF11	YDR228C	mRNA 3' end processing factor	genetic	1	1	1	Negative Genetic
TAR1	YLR154W-C	Protein potentially involved in regulation of respiratory metabolism	physical	1	1	1	Affinity Capture-RNA
NUP192	YJL039C	Essential subunit of inner ring of nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
NUP85	YJR042W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	genetic	1	1	1	Negative Genetic
SAC3	YDR159W	mRNA export factor	genetic	1	1	1	Negative Genetic
POP2	YNR052C	Subunit of Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation	physical	1	1	1	Affinity Capture-Western
NAB3	YPL190C	RNA-binding protein, subunit of Nrd1 complex (Nrd1p-Nab3p-Sen1p)	physical	1	1	1	Affinity Capture-RNA
NRD1	YNL251C	RNA-binding subunit of Nrd1 complex	physical	1	1	1	Affinity Capture-RNA
SLT2	YHR030C	Serine/threonine MAP kinase	physical	1	1	1	Biochemical Activity
SIZ1	YDR409W	SUMO E3 ligase	physical	1	1	1	Affinity Capture-MS
RPO31	YOR116C	RNA polymerase III largest subunit C160	genetic	1	1	1	Negative Genetic
SOV1	YMR066W	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-MS
PRP8	YHR165C	Component of U4/U6-U5 snRNP complex	physical	1	1	1	Affinity Capture-MS
SNU114	YKL173W	GTPase component of U5 snRNP involved in mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-MS
SNU114	YKL173W	GTPase component of U5 snRNP involved in mRNA splicing via spliceosome	genetic	1	1	1	Negative Genetic
VTC4	YJL012C	Vacuolar membrane polyphosphate polymerase	physical	1	1	1	Affinity Capture-MS
PRP9	YDL030W	Subunit of the SF3a splicing factor complex	physical	1	1	1	Affinity Capture-MS
PRP9	YDL030W	Subunit of the SF3a splicing factor complex	genetic	1	1	1	Negative Genetic
PFK1	YGR240C	Alpha subunit of heterooctameric phosphofructokinase	physical	1	1	1	Affinity Capture-MS
SNU71	YGR013W	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-MS
PRP19	YLL036C	Splicing factor associated with the spliceosome	physical	1	1	1	Affinity Capture-MS
RPN2	YIL075C	Subunit of the 26S proteasome	physical	1	1	1	Affinity Capture-MS
RPN7	YPR108W	Essential non-ATPase regulatory subunit of the 26S proteasome	physical	1	1	1	Affinity Capture-MS
SNU56	YDR240C	Component of U1 snRNP required for mRNA splicing via spliceosome	physical	1	1	1	Affinity Capture-MS
SNU56	YDR240C	Component of U1 snRNP required for mRNA splicing via spliceosome	genetic	1	1	1	Negative Genetic
RPL8A	YHL033C	Ribosomal 60S subunit protein L8A	physical	1	1	1	Affinity Capture-MS
THP2	YHR167W	Subunit of the THO and TREX complexes	physical	1	1	1	Affinity Capture-MS
SSA2	YLL024C	HSP70 family ATP-binding protein	physical	1	1	1	Affinity Capture-MS
RIF1	YBR275C	Protein involved in control of DNA replication	physical	1	1	1	Affinity Capture-MS
SIR2	YDL042C	Conserved NAD+ dependent histone deacetylase of the Sirtuin family	physical	1	1	1	Affinity Capture-MS
YHR127W	YHR127W	Protein of unknown function	physical	1	1	1	Affinity Capture-MS
RPL16B	YNL069C	Ribosomal 60S subunit protein L16B	physical	1	1	1	Affinity Capture-MS
RPL1A	YPL220W	Ribosomal 60S subunit protein L1A	physical	1	1	1	Affinity Capture-MS
SSB2	YNL209W	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone	physical	1	1	1	Affinity Capture-MS
RPS1A	YLR441C	Ribosomal protein of the small (40S) subunit	physical	1	1	1	Affinity Capture-MS
RPL21B	YPL079W	Ribosomal 60S subunit protein L21B	physical	1	1	1	Affinity Capture-MS
NDC1	YML031W	Subunit of the transmembrane ring of the nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-MS
RPT5	YOR117W	ATPase of the 19S regulatory particle of the 26S proteasome	physical	1	1	1	Affinity Capture-MS
SMD1	YGR074W	Core Sm protein Sm D1	physical	1	1	1	Affinity Capture-MS
NUP84	YDL116W	Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC)	physical	1	1	1	Affinity Capture-MS
PMA1	YGL008C	Plasma membrane P2-type H+-ATPase	physical	1	1	1	Affinity Capture-MS
THP1	YOL072W	Nuclear pore-associated protein	physical	1	1	1	Affinity Capture-MS
THP1	YOL072W	Nuclear pore-associated protein	genetic	1	1	1	Dosage Rescue
TIF4631	YGR162W	Translation initiation factor eIF4G and scaffold protein	physical	1	1	1	Affinity Capture-MS
RPL4B	YDR012W	Ribosomal 60S subunit protein L4B	physical	1	1	1	Affinity Capture-MS
NUP100	YKL068W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
NUP116	YMR047C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
NUP57	YGR119C	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
NUP49	YGL172W	FG-nucleoporin component of central core of the nuclear pore complex	physical	1	1	1	Affinity Capture-MS
RPS0A	YGR214W	Ribosomal 40S subunit protein S0A	physical	1	1	1	Affinity Capture-MS
RPS9A	YPL081W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS18A	YDR450W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS22A	YJL190C	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
RPS27A	YKL156W	Protein component of the small (40S) ribosomal subunit	physical	1	1	1	Affinity Capture-MS
PML39	YML107C	Protein required for nuclear retention of unspliced pre-mRNAs	genetic	1	1	1	Synthetic Rescue
PAP1	YKR002W	Poly(A) polymerase	genetic	1	1	1	Synthetic Growth Defect
RNA15	YGL044C	Component of the cleavage and polyadenylation factor I (CF I)	genetic	1	1	1	Synthetic Growth Defect
RPB9	YGL070C	RNA polymerase II subunit B12.6	genetic	1	1	1	Synthetic Lethality
UTP8	YGR128C	Nucleolar protein required for export of tRNAs from the nucleus	genetic	1	1	1	Dosage Growth Defect
TAF5	YBR198C	Subunit (90 kDa) of TFIID and SAGA complexes	genetic	1	1	1	Positive Genetic
TIM22	YDL217C	Essential core component of mitochondrial TIM22 complex	genetic	1	1	1	Positive Genetic
TYS1	YGR185C	Cytoplasmic tyrosyl-tRNA synthetase	genetic	1	1	1	Positive Genetic
SDA1	YGR245C	Protein required for actin organization and passage through Start	genetic	1	1	1	Positive Genetic
NEO1	YIL048W	Phospholipid translocase (flippase)	genetic	1	1	1	Positive Genetic
TOR2	YKL203C	PIK-related protein kinase and rapamycin target	genetic	1	1	1	Positive Genetic
ROT1	YMR200W	Molecular chaperone involved in protein folding in ER	genetic	1	1	1	Positive Genetic
NOP2	YNL061W	rRNA m5C methyltransferase	genetic	1	1	1	Positive Genetic
OST2	YOR103C	Epsilon subunit of the oligosaccharyltransferase complex	genetic	1	1	1	Positive Genetic
SEC62	YPL094C	Essential subunit of Sec63 complex	genetic	1	1	1	Positive Genetic
SWC5	YBR231C	Component of the SWR1 complex	genetic	1	1	1	Positive Genetic
REI1	YBR267W	Cytoplasmic pre-60S factor	genetic	1	1	1	Positive Genetic
RRP8	YDR083W	Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase	genetic	1	1	1	Positive Genetic
RPL22A	YLR061W	Ribosomal 60S subunit protein L22A	genetic	1	1	1	Positive Genetic
TRS20	YBR254C	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Negative Genetic
PRP11	YDL043C	Subunit of the SF3a splicing factor complex	genetic	1	1	1	Negative Genetic
SNU23	YDL098C	Component of the U4/U6.U5 snRNP complex	genetic	1	1	1	Negative Genetic
PSF1	YDR013W	Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p)	genetic	1	1	1	Negative Genetic
STN1	YDR082W	Telomere end-binding and capping protein	genetic	1	1	1	Negative Genetic
SLU7	YDR088C	RNA splicing factor	genetic	1	1	1	Negative Genetic
UTP5	YDR398W	Subunit of U3-containing Small Subunit (SSU) processome complex	genetic	1	1	1	Negative Genetic
SYF1	YDR416W	Member of the NineTeen Complex (NTC)	genetic	1	1	1	Negative Genetic
SEC20	YDR498C	Membrane glycoprotein v-SNARE	genetic	1	1	1	Negative Genetic
YIP1	YGR172C	Integral membrane protein	genetic	1	1	1	Negative Genetic
UTP9	YHR196W	Nucleolar protein	genetic	1	1	1	Negative Genetic
PRI1	YIR008C	Subunit of DNA primase	genetic	1	1	1	Negative Genetic
RRN7	YJL025W	Component of the core factor (CF) rDNA transcription factor complex	genetic	1	1	1	Negative Genetic
PRP21	YJL203W	Subunit of the SF3a splicing factor complex	genetic	1	1	1	Negative Genetic
YJU2	YKL095W	Essential protein required for pre-mRNA splicing	genetic	1	1	1	Negative Genetic
NSE1	YLR007W	Component of the SMC5-SMC6 complex	genetic	1	1	1	Negative Genetic
YHC1	YLR298C	Component of the U1 snRNP complex required for pre-mRNA splicing	genetic	1	1	1	Negative Genetic
SPC24	YMR117C	Component of the kinetochore-associated Ndc80 complex	genetic	1	1	1	Negative Genetic
RNA1	YMR235C	GTPase activating protein (GAP) for Gsp1p	genetic	1	1	1	Negative Genetic
PRP24	YMR268C	Splicing factor that reanneals snRNPs during spliceosome recycling	genetic	1	1	1	Negative Genetic
POL1	YNL102W	Catalytic subunit of the DNA polymerase I alpha-primase complex	genetic	1	1	1	Negative Genetic
SRV2	YNL138W	CAP (cyclase-associated protein)	genetic	1	1	1	Negative Genetic
SEC12	YNR026C	Guanine nucleotide exchange factor (GEF)	genetic	1	1	1	Negative Genetic
SGT1	YOR057W	Cochaperone protein	genetic	1	1	1	Negative Genetic
SMP3	YOR149C	Alpha 1,2-mannosyltransferase	genetic	1	1	1	Negative Genetic
SEC16	YPL085W	COPII vesicle coat protein required for ER transport vesicle budding	genetic	1	1	1	Negative Genetic
PRP4	YPR178W	Splicing factor	genetic	1	1	1	Negative Genetic
SEC23	YPR181C	GTPase-activating protein, stimulates the GTPase activity of Sar1p	genetic	1	1	1	Negative Genetic
SEC1	YDR164C	Sm-like protein involved in docking and fusion of exocytic vesicles	genetic	1	1	1	Negative Genetic
SPC97	YHR172W	Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex	genetic	1	1	1	Negative Genetic
RRN3	YKL125W	Protein required for transcription of rDNA by RNA polymerase I	genetic	1	1	1	Negative Genetic
SSL1	YLR005W	Subunit of the core form of RNA polymerase transcription factor TFIIH	genetic	1	1	1	Negative Genetic
TAD3	YLR316C	Subunit of tRNA-specific adenosine-34 deaminase	genetic	1	1	1	Negative Genetic
UTP15	YMR093W	Nucleolar protein	genetic	1	1	1	Negative Genetic
PIN4	YBL051C	Protein involved in G2/M phase progression and response to DNA damage	genetic	1	1	1	Negative Genetic
PAT1	YCR077C	Deadenylation-dependent mRNA-decapping factor	genetic	1	1	1	Negative Genetic
RPA14	YDR156W	RNA polymerase I subunit A14	genetic	1	1	1	Negative Genetic
STL1	YDR536W	Glycerol proton symporter of the plasma membrane	genetic	1	1	1	Negative Genetic
SMT1	YJL147C	Translational repressor of the mitochondrial ATP6/8 mRNA	genetic	1	1	1	Negative Genetic
YKL069W	YKL069W	Methionine-R-sulfoxide reductase	genetic	1	1	1	Negative Genetic
SPE1	YKL184W	Ornithine decarboxylase	genetic	1	1	1	Negative Genetic
YKR041W	YKR041W	Protein of unknown function	genetic	1	1	1	Negative Genetic
SST2	YLR452C	GTPase-activating protein for Gpa1p	genetic	1	1	1	Negative Genetic
YNL140C	YNL140C	Protein of unknown function	genetic	1	1	1	Negative Genetic
SNU66	YOR308C	Component of the U4/U6.U5 snRNP complex	genetic	1	1	1	Negative Genetic
UME1	YPL139C	Component of both the Rpd3S and Rpd3L histone deacetylase complexes	genetic	1	1	1	Negative Genetic
TGS1	YPL157W	Trimethyl guanosine synthase, conserved nucleolar methyl transferase	genetic	1	1	1	Negative Genetic
YPR078C	YPR078C	Putative protein of unknown function	genetic	1	1	1	Negative Genetic
BMS1	YPL217C	GTPase required for ribosomal subunit synthesis and rRNA processing	physical	1	1	1	Affinity Capture-RNA
ABD1	YBR236C	Methyltransferase	physical	1	1	1	Affinity Capture-RNA
ABD1	YBR236C	Methyltransferase	genetic	1	1	1	Positive Genetic
ACC1	YNR016C	Acetyl-CoA carboxylase, biotin containing enzyme	physical	1	1	1	Affinity Capture-RNA
ADE13	YLR359W	Adenylosuccinate lyase	physical	1	1	1	Affinity Capture-RNA
ADE4	YMR300C	Phosphoribosylpyrophosphate amidotransferase (PRPPAT)	physical	1	1	1	Affinity Capture-RNA
AOS1	YPR180W	Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Uba2p	physical	1	1	1	Affinity Capture-RNA
APC2	YLR127C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
ATG14	YBR128C	Autophagy-specific subunit of phosphatidylinositol 3-kinase complex I	physical	1	1	1	Affinity Capture-RNA
APL1	YJR005W	Beta-adaptin	physical	1	1	1	Affinity Capture-RNA
APL3	YBL037W	Alpha-adaptin	physical	1	1	1	Affinity Capture-RNA
APL5	YPL195W	Delta adaptin-like subunit of the clathrin associated protein complex	physical	1	1	1	Affinity Capture-RNA
ARC15	YIL062C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARC18	YLR370C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARC19	YKL013C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARC35	YNR035C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARC40	YBR234C	Subunit of the ARP2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARD1	YHR013C	Subunit of protein N-terminal acetyltransferase NatA	physical	1	1	1	Affinity Capture-RNA
ARP2	YDL029W	Essential component of the Arp2/3 complex	physical	1	1	1	Affinity Capture-RNA
ARP3	YJR065C	Essential component of the Arp2/3 complex	physical	1	1	1	Affinity Capture-RNA
BEM1	YBR200W	Protein containing SH3-domains	physical	1	1	1	Affinity Capture-RNA
BET3	YKR068C	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
BET3	YKR068C	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Negative Genetic
BET2	YPR176C	Beta subunit of Type II geranylgeranyltransferase	physical	1	1	1	Affinity Capture-RNA
BET2	YPR176C	Beta subunit of Type II geranylgeranyltransferase	genetic	1	1	1	Negative Genetic
BMH2	YDR099W	14-3-3 protein, minor isoform	physical	1	1	1	Affinity Capture-RNA
BEM2	YER155C	Rho GTPase activating protein (RhoGAP)	physical	1	1	1	Affinity Capture-RNA
BUD20	YLR074C	C2H2-type zinc finger protein required for ribosome assembly	physical	1	1	1	Affinity Capture-RNA
CAP1	YKL007W	Alpha subunit of the capping protein heterodimer (Cap1p and Cap2p)	physical	1	1	1	Affinity Capture-RNA
AIM21	YIR003W	Subunit of a complex that associates with actin filaments	physical	1	1	1	Affinity Capture-RNA
CAR1	YPL111W	Arginase, catabolizes arginine to ornithine and urea	physical	1	1	1	Affinity Capture-RNA
CCL1	YPR025C	Cyclin partner of the cyclin-dependent kinase (CDK) Kin28p	physical	1	1	1	Affinity Capture-RNA
CAF130	YGR134W	Subunit of the CCR4-NOT transcriptional regulatory complex	physical	1	1	1	Affinity Capture-RNA
CAF40	YNL288W	Component of the CCR4-NOT transcriptional complex	physical	1	1	1	Affinity Capture-RNA
CDC14	YFR028C	Protein phosphatase required for mitotic exit	genetic	1	1	1	Dosage Rescue
CDC28	YBR160W	Cyclin-dependent kinase (CDK) catalytic subunit	physical	1	1	1	Affinity Capture-RNA
CDC10	YCR002C	Component of the septin ring, required for cytokinesis	physical	1	1	1	Affinity Capture-RNA
CDC11	YJR076C	Component of the septin ring that is required for cytokinesis	physical	1	1	1	Affinity Capture-RNA
CDC11	YJR076C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Positive Genetic
CDC12	YHR107C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Positive Genetic
CDC3	YLR314C	Component of the septin ring that is required for cytokinesis	physical	1	1	1	Affinity Capture-RNA
CDC3	YLR314C	Component of the septin ring that is required for cytokinesis	genetic	1	1	1	Positive Genetic
ATP11	YNL315C	Molecular chaperone	physical	1	1	1	Affinity Capture-RNA
CDC36	YDL165W	Component of the CCR4-NOT core complex, involved in mRNA decapping	physical	1	1	1	Affinity Capture-RNA
ERG26	YGL001C	C-3 sterol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
BNI1	YNL271C	Formin	physical	1	1	1	Affinity Capture-RNA
CDC55	YGL190C	Regulatory subunit B of protein phosphatase 2A (PP2A)	physical	1	1	1	Affinity Capture-RNA
HIS3	YOR202W	Imidazoleglycerol-phosphate dehydratase	physical	1	1	1	Affinity Capture-RNA
BUD31	YCR063W	Component of the SF3b subcomplex of the U2 snRNP	genetic	1	1	1	Negative Genetic
CEG1	YGL130W	Guanylyltransferase involved in mRNA 5' capping	physical	1	1	1	Affinity Capture-RNA
AVO1	YOL078W	Component of the membrane-bound TORC2 complex	physical	1	1	1	Affinity Capture-RNA
CHC1	YGL206C	Clathrin heavy chain	physical	1	1	1	Affinity Capture-MS
CLP1	YOR250C	Component of the cleavage and polyadenylation factor I (CF I)	genetic	1	1	1	Negative Genetic
COP1	YDL145C	Alpha subunit of COPI vesicle coatomer complex	physical	1	1	1	Affinity Capture-RNA
COX4	YGL187C	Subunit IV of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
COX5A	YNL052W	Subunit Va of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
COX6	YHR051W	Subunit VI of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
CPR1	YDR155C	Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
CTK1	YKL139W	Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I)	physical	1	1	1	Affinity Capture-RNA
CUS1	YMR240C	Protein required for assembly of U2 snRNP into the spliceosome	genetic	1	1	1	Negative Genetic
CYR1	YJL005W	Adenylate cyclase	physical	1	1	1	Affinity Capture-RNA
CYS4	YGR155W	Cystathionine beta-synthase	physical	1	1	1	Affinity Capture-RNA
DCP1	YOL149W	Subunit of the Dcp1p-Dcp2p decapping enzyme complex	physical	1	1	1	Affinity Capture-RNA
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	physical	1	1	1	Affinity Capture-RNA
DCP2	YNL118C	Catalytic subunit of Dcp1p-Dcp2p decapping enzyme complex	genetic	1	1	1	Positive Genetic
DNA2	YHR164C	ATP-dependent 5'-flap endonuclease and DNA helicase	physical	1	1	1	Affinity Capture-RNA
CIA2	YHR122W	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	physical	1	1	1	Affinity Capture-RNA
CIA2	YHR122W	Component of cytosolic iron-sulfur protein assembly (CIA) machinery	genetic	1	1	1	Negative Genetic
DOA1	YKL213C	WD-repeat protein involved in ubiquitin-mediated protein degradation	physical	1	1	1	Affinity Capture-MS
CDC16	YKL022C	Subunit of the anaphase-promoting complex/cyclosome (APC/C)	genetic	1	1	1	Negative Genetic
CDC23	YHR166C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
DPB3	YBR278W	Third-largest subunit of DNA polymerase II (DNA polymerase epsilon)	physical	1	1	1	Affinity Capture-RNA
EDE1	YBL047C	Scaffold protein involved in the formation of early endocytic sites	physical	1	1	1	Affinity Capture-RNA
ELP2	YGR200C	Subunit of Elongator complex	genetic	1	1	1	Negative Genetic
ENO1	YGR254W	Enolase I, a phosphopyruvate hydratase	physical	1	1	1	Affinity Capture-RNA
EMG1	YLR186W	Methyltransferase for rRNA	genetic	1	1	1	Positive Genetic
ENP1	YBR247C	Protein associated with U3 and U14 snoRNAs	genetic	1	1	1	Phenotypic Suppression
EAF3	YPR023C	Component of the Rpd3S histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
EMP24	YGL200C	Component of the p24 complex	physical	1	1	1	Affinity Capture-RNA
ERP1	YAR002C-A	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
ERP2	YAL007C	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
FPR1	YNL135C	Peptidyl-prolyl cis-trans isomerase (PPIase)	physical	1	1	1	Affinity Capture-RNA
GCN2	YDR283C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
GCN1	YGL195W	Positive regulator of the Gcn2p kinase activity	physical	1	1	1	Affinity Capture-RNA
CCT4	YDL143W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
CCT4	YDL143W	Subunit of the cytosolic chaperonin Cct ring complex	genetic	1	1	1	Negative Genetic
GCN3	YKR026C	Alpha subunit of translation initiation factor eIF2B	physical	1	1	1	Two-hybrid
GDI1	YER136W	GDP dissociation inhibitor	physical	1	1	1	Affinity Capture-RNA
GDI1	YER136W	GDP dissociation inhibitor	genetic	1	1	1	Negative Genetic
ERV25	YML012W	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
ESP1	YGR098C	Separase/separin, a caspase-like cysteine protease	physical	1	1	1	Affinity Capture-RNA
HAP2	YGL237C	Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex	physical	1	1	1	Affinity Capture-RNA
BDF2	YDL070W	Protein involved in transcription initiation	physical	1	1	1	Affinity Capture-RNA
AEP1	YMR064W	Protein required for expression of the mitochondrial OLI1 gene	physical	1	1	1	Affinity Capture-MS
AEP2	YMR282C	Mitochondrial protein	physical	1	1	1	Affinity Capture-MS
HRT1	YOL133W	RING-H2 domain core subunit of multiple ubiquitin ligase complexes	physical	1	1	1	Affinity Capture-RNA
HHF2	YNL030W	Histone H4	physical	1	1	1	Affinity Capture-RNA
HIF1	YLL022C	Non-essential component of the HAT-B histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
DPB4	YDR121W	Subunit of DNA pol epsilon and of ISW2 chromatin accessibility complex	physical	1	1	1	Affinity Capture-RNA
HTB2	YBL002W	Histone H2B	physical	1	1	1	Affinity Capture-RNA
IPP1	YBR011C	Cytoplasmic inorganic pyrophosphatase (PPase)	physical	1	1	1	Affinity Capture-RNA
IRR1	YIL026C	Subunit of the cohesin complex	physical	1	1	1	Affinity Capture-RNA
IST1	YNL265C	Protein with positive role in the multivesicular body sorting pathway	physical	1	1	1	Affinity Capture-RNA
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	physical	1	1	1	Affinity Capture-RNA
ISW1	YBR245C	ATPase subunit of imitation-switch (ISWI) class chromatin remodelers	genetic	1	1	1	Synthetic Rescue
KGD1	YIL125W	Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex	physical	1	1	1	Affinity Capture-RNA
KGD2	YDR148C	Dihydrolipoyl transsuccinylase	physical	1	1	1	Affinity Capture-RNA
KRE33	YNL132W	Acetyltransferase required for biogenesis of small ribosomal subunit	physical	1	1	1	Affinity Capture-MS
HSL1	YKL101W	Nim1p-related protein kinase	physical	1	1	1	Affinity Capture-RNA
END3	YNL084C	EH domain-containing protein involved in endocytosis	physical	1	1	1	Affinity Capture-RNA
CRM1	YGR218W	Nuclear export factor, exportin	physical	1	1	1	Affinity Capture-RNA
LCB2	YDR062W	Component of serine palmitoyltransferase	physical	1	1	1	Affinity Capture-RNA
LCB2	YDR062W	Component of serine palmitoyltransferase	genetic	1	1	1	Negative Genetic
LSM2	YBL026W	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
LSM2	YBL026W	Lsm (Like Sm) protein	genetic	1	1	1	Negative Genetic
LSM7	YNL147W	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
ENO2	YHR174W	Enolase II, a phosphopyruvate hydratase	physical	1	1	1	Affinity Capture-RNA
LST8	YNL006W	Protein required for the transport of Gap1p	physical	1	1	1	Affinity Capture-RNA
LUC7	YDL087C	Essential protein associated with the U1 snRNP complex	genetic	1	1	1	Negative Genetic
MAK5	YBR142W	Essential nucleolar protein	physical	1	1	1	Affinity Capture-RNA
MAS1	YLR163C	Beta subunit of the mitochondrial processing protease (MPP)	physical	1	1	1	Affinity Capture-RNA
GLT1	YDL171C	NAD(+)-dependent glutamate synthase (GOGAT)	physical	1	1	1	Affinity Capture-RNA
MCM5	YLR274W	Component of the Mcm2-7 hexameric helicase complex	genetic	1	1	1	Negative Genetic
MCM6	YGL201C	Protein involved in DNA replication	physical	1	1	1	Affinity Capture-RNA
CSE2	YNR010W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
GAL11	YOL051W	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MED11	YMR112C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MED6	YHR058C	Subunit of the RNA polymerase II mediator complex	genetic	1	1	1	Negative Genetic
MOT1	YPL082C	Essential protein involved in regulation of transcription	genetic	1	1	1	Negative Genetic
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	physical	1	1	1	Affinity Capture-RNA
HSC82	YMR186W	Cytoplasmic chaperone of the Hsp90 family	genetic	1	1	1	Negative Genetic
MRP1	YDR347W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
MRP13	YGR084C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
MRP21	YBL090W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
HRR25	YPL204W	Conserved casein kinase, monopolin subunit	physical	1	1	1	Affinity Capture-RNA
IMG1	YCR046C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
IMG2	YCR071C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MHR1	YDR296W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL10	YNL284C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL1	YDR116C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
BUD3	YCL014W	Guanine nucleotide exchange factor (GEF) for Cdc42p	physical	1	1	1	Affinity Capture-RNA
MRPL16	YBL038W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
ATG26	YLR189C	UDP-glucose:sterol glucosyltransferase	physical	1	1	1	Affinity Capture-RNA
MRP20	YDR405W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL19	YNL185C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRP49	YKL167C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL13	YKR006C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL20	YKR085C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL24	YMR193W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL25	YGR076C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL28	YDR462W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL36	YBR122C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL39	YML009C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL44	YMR225C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL7	YDR237W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-MS
FYV4	YHR059W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRP10	YDL045W-A	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
MRP17	YKL003C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
MRP51	YPL118W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
MRPS28	YDR337W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
MRPS5	YBR251W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
CCM1	YGR150C	Mitochondrial 15S rRNA-binding protein	physical	1	1	1	Affinity Capture-RNA
MRPS18	YNL306W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
MRPS16	YPL013C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
HDA3	YPR179C	Subunit of HDA1 histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
MSH2	YOL090W	Protein that binds to DNA mismatches	physical	1	1	1	Affinity Capture-RNA
MEC1	YBR136W	Genome integrity checkpoint protein and PI kinase superfamily member	physical	1	1	1	Affinity Capture-RNA
MSH3	YCR092C	Mismatch repair protein	physical	1	1	1	Affinity Capture-RNA
MSH6	YDR097C	Protein required for mismatch repair in mitosis and meiosis	physical	1	1	1	Affinity Capture-RNA
ATG3	YNR007C	E2-like enzyme	physical	1	1	1	Affinity Capture-RNA
MLC1	YGL106W	Essential light chain for Myo1p	physical	1	1	1	Affinity Capture-RNA
MLC2	YPR188C	Regulatory light chain for the type II myosin Myo1p	physical	1	1	1	Affinity Capture-RNA
CMD1	YBR109C	Calmodulin	physical	1	1	1	Affinity Capture-RNA
CMD1	YBR109C	Calmodulin	genetic	1	1	1	Negative Genetic
MAM33	YIL070C	Acidic protein of the mitochondrial matrix	physical	1	1	1	Affinity Capture-RNA
MYO2	YOR326W	Type V myosin motor involved in actin-based transport of cargos	physical	1	1	1	Affinity Capture-MS
MYO4	YAL029C	Type V myosin motor involved in actin-based transport of cargos	physical	1	1	1	Affinity Capture-MS
GIN4	YDR507C	Protein kinase involved in bud growth and assembly of the septin ring	physical	1	1	1	Affinity Capture-RNA
HTZ1	YOL012C	Histone variant H2AZ	physical	1	1	1	Affinity Capture-RNA
KAP114	YGL241W	Karyopherin, responsible for nuclear import of specific proteins	physical	1	1	1	Affinity Capture-RNA
INO80	YGL150C	Nucleosome spacing factor	physical	1	1	1	Affinity Capture-RNA
ITC1	YGL133W	Subunit of ATP-dependent Isw2p-Itc1p chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
IES5	YER092W	Non-essential INO80 chromatin remodeling complex subunit	physical	1	1	1	Affinity Capture-RNA
IES1	YFL013C	Subunit of the INO80 chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
HER1	YOR227W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FAS2	YPL231W	Alpha subunit of fatty acid synthetase	physical	1	1	1	Affinity Capture-RNA
AHA1	YDR214W	Co-chaperone that binds Hsp82p and activates its ATPase activity	physical	1	1	1	Affinity Capture-RNA
MRPL15	YLR312W-A	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
HSP42	YDR171W	Small heat shock protein (sHSP) with chaperone activity	physical	1	1	1	Affinity Capture-RNA
AFG2	YLR397C	ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex	genetic	1	1	1	Negative Genetic
GIM3	YNL153C	Subunit of the heterohexameric cochaperone prefoldin complex	physical	1	1	1	Affinity Capture-RNA
GIM5	YML094W	Subunit of the heterohexameric cochaperone prefoldin complex	physical	1	1	1	Affinity Capture-RNA
HMO1	YDR174W	Chromatin associated high mobility group (HMG) family member	physical	1	1	1	Affinity Capture-RNA
MGS1	YNL218W	Protein with DNA-dependent ATPase and ssDNA annealing activities	physical	1	1	1	Affinity Capture-RNA
APM1	YPL259C	Mu1-like medium subunit of the AP-1 complex	physical	1	1	1	Affinity Capture-RNA
LPD1	YFL018C	Dihydrolipoamide dehydrogenase	physical	1	1	1	Affinity Capture-RNA
DIG1	YPL049C	MAP kinase-responsive inhibitor of the Ste12p transcription factor	physical	1	1	1	Affinity Capture-RNA
IDH2	YOR136W	Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
HSP82	YPL240C	Hsp90 chaperone	physical	1	1	1	Affinity Capture-RNA
HTA1	YDR225W	Histone H2A	physical	1	1	1	Affinity Capture-RNA
LEA1	YPL213W	Component of U2 snRNP complex	genetic	1	1	1	Negative Genetic
CWC22	YGR278W	Spliceosome-associated protein that is required for pre-mRNA splicing	genetic	1	1	1	Negative Genetic
LIN1	YHR156C	Non-essential component of U5 snRNP	physical	1	1	1	Affinity Capture-RNA
INO4	YOL108C	Transcription factor involved in phospholipid synthesis	physical	1	1	1	Affinity Capture-RNA
INO4	YOL108C	Transcription factor involved in phospholipid synthesis	genetic	1	1	1	Positive Genetic
MDS3	YGL197W	Putative component of the TOR regulatory pathway	physical	1	1	1	Affinity Capture-RNA
HTA2	YBL003C	Histone H2A	physical	1	1	1	Affinity Capture-RNA
IMP4	YNL075W	Component of the SSU processome	physical	1	1	1	Affinity Capture-RNA
MIR1	YJR077C	Mitochondrial phosphate carrier	genetic	1	1	1	Positive Genetic
MKT1	YNL085W	Protein similar to nucleases that forms a complex with Pbp1p	physical	1	1	1	Affinity Capture-RNA
MED8	YBR193C	Subunit of the RNA polymerase II mediator complex	physical	1	1	1	Affinity Capture-RNA
MRPL6	YHR147C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
IWR1	YDL115C	RNA polymerase II transport factor, conserved from yeast to humans	physical	1	1	1	Affinity Capture-RNA
DEP1	YAL013W	Component of the Rpd3L histone deacetylase complex	genetic	1	1	1	Negative Genetic
CTI6	YPL181W	Component of the Rpd3L histone deacetylase complex	physical	1	1	1	Affinity Capture-RNA
DBP2	YNL112W	ATP-dependent RNA helicase of the DEAD-box protein family	physical	1	1	1	Affinity Capture-MS
MLH2	YLR035C	Protein involved in mismatch repair and meiotic recombination	physical	1	1	1	Affinity Capture-RNA
MAF1	YDR005C	Highly conserved negative regulator of RNA polymerase III	physical	1	1	1	Affinity Capture-RNA
CSI1	YMR025W	Subunit of the Cop9 signalosome	physical	1	1	1	Affinity Capture-RNA
MNN10	YDR245W	Subunit of a Golgi mannosyltransferase complex	physical	1	1	1	Affinity Capture-RNA
CSE1	YGL238W	Nuclear envelope protein that acts as a recycling factor	physical	1	1	1	Affinity Capture-RNA
KTR3	YBR205W	Putative alpha-1,2-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
HOS2	YGL194C	Histone deacetylase and subunit of Set3 and Rpd3L complexes	physical	1	1	1	Affinity Capture-RNA
ABF2	YMR072W	Mitochondrial DNA-binding protein	physical	1	1	1	Affinity Capture-RNA
BGL2	YGR282C	Endo-beta-1,3-glucanase	physical	1	1	1	Affinity Capture-RNA
CDC25	YLR310C	Membrane bound guanine nucleotide exchange factor	physical	1	1	1	Affinity Capture-RNA
BZZ1	YHR114W	SH3 domain protein implicated in regulating actin polymerization	physical	1	1	1	Affinity Capture-RNA
ECM25	YJL201W	Endocytic site protein required for stress-induced cell elongation	physical	1	1	1	Affinity Capture-RNA
BRR1	YPR057W	snRNP protein component of spliceosomal snRNPs	physical	1	1	1	Affinity Capture-RNA
BRR1	YPR057W	snRNP protein component of spliceosomal snRNPs	genetic	1	1	1	Negative Genetic
GCN5	YGR252W	Catalytic subunit of ADA and SAGA histone acetyltransferase complexes	physical	1	1	1	Affinity Capture-RNA
BUR2	YLR226W	Cyclin for the Sgv1p (Bur1p) protein kinase	physical	1	1	1	Affinity Capture-RNA
MSH4	YFL003C	Protein involved in meiotic recombination	physical	1	1	1	Affinity Capture-RNA
MIP6	YHR015W	Putative RNA-binding protein	physical	1	1	1	Affinity Capture-RNA
MRPL23	YOR150W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
CRN1	YLR429W	Coronin	physical	1	1	1	Affinity Capture-RNA
HEM13	YDR044W	Coproporphyrinogen III oxidase	genetic	1	1	1	Negative Genetic
CCT6	YDR188W	Subunit of the cytosolic chaperonin Cct ring complex	genetic	1	1	1	Negative Genetic
CCT7	YJL111W	Subunit of the cytosolic chaperonin Cct ring complex	physical	1	1	1	Affinity Capture-RNA
CAM1	YPL048W	One of two isoforms of the gamma subunit of eEF1B	physical	1	1	1	Affinity Capture-RNA
EFB1	YAL003W	Translation elongation factor 1 beta	physical	1	1	1	Affinity Capture-RNA
BCY1	YIL033C	Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA)	physical	1	1	1	Affinity Capture-RNA
CTR3	YLR411W	High-affinity copper transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
DAL3	YIR032C	Ureidoglycolate lyase	physical	1	1	1	Affinity Capture-RNA
GLN1	YPR035W	Glutamine synthetase (GS)	physical	1	1	1	Affinity Capture-RNA
MCM2	YBL023C	Protein involved in DNA replication	physical	1	1	1	Affinity Capture-RNA
MKS1	YNL076W	Pleiotropic negative transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
BET5	YML077W	Core component of transport protein particle (TRAPP) complexes I-III	physical	1	1	1	Affinity Capture-RNA
BET5	YML077W	Core component of transport protein particle (TRAPP) complexes I-III	genetic	1	1	1	Positive Genetic
BCK1	YJL095W	MAPKKK acting in the protein kinase C signaling pathway	physical	1	1	1	Affinity Capture-RNA
ECM30	YLR436C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DRS2	YAL026C	Trans-golgi network aminophospholipid translocase (flippase)	genetic	1	1	1	Negative Genetic
BDH2	YAL061W	Putative medium-chain alcohol dehydrogenase with similarity to BDH1	physical	1	1	1	Affinity Capture-RNA
FES1	YBR101C	Hsp70 (Ssa1p) nucleotide exchange factor	physical	1	1	1	Affinity Capture-RNA
BOI1	YBL085W	Protein involved in polar growth, functionally redundant with Boi2p	physical	1	1	1	Affinity Capture-RNA
GET3	YDL100C	Guanine nucleotide exchange factor for Gpa1p	physical	1	1	1	Affinity Capture-RNA
DTD1	YDL219W	D-Tyr-tRNA(Tyr) deacylase	physical	1	1	1	Affinity Capture-RNA
CAB5	YDR196C	Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC)	physical	1	1	1	Affinity Capture-RNA
CAB5	YDR196C	Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC)	genetic	1	1	1	Negative Genetic
CYM1	YDR430C	Lysine-specific metalloprotease of the pitrilysin family	physical	1	1	1	Affinity Capture-RNA
CMS1	YLR003C	Putative subunit of the 90S preribosome processome complex	physical	1	1	1	Affinity Capture-RNA
AIM17	YHL021C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LPL1	YOR059C	Phospholipase	physical	1	1	1	Affinity Capture-RNA
LSM12	YHR121W	Protein of unknown function that may function in RNA processing	physical	1	1	1	Affinity Capture-RNA
LAP2	YNL045W	Leucyl aminopeptidase yscIV with epoxide hydrolase activity	physical	1	1	1	Affinity Capture-RNA
FAR11	YNL127W	Protein involved in recovery from cell cycle arrest	physical	1	1	1	Affinity Capture-RNA
ATP2	YJR121W	Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
LYS9	YNR050C	Saccharopine dehydrogenase (NADP+, L-glutamate-forming)	physical	1	1	1	Affinity Capture-RNA
CIR2	YOR356W	Putative ortholog of human ETF-dH	physical	1	1	1	Affinity Capture-RNA
CDC13	YDL220C	Single stranded DNA-binding protein found at TG1-3 telomere G-tails	genetic	1	1	1	Negative Genetic
FPR3	YML074C	Nucleolar peptidyl-prolyl cis-trans isomerase (PPIase)	physical	1	1	1	Affinity Capture-RNA
GPH1	YPR160W	Glycogen phosphorylase required for the mobilization of glycogen	physical	1	1	1	Affinity Capture-RNA
DNM1	YLL001W	Dynamin-related GTPase involved in mitochondrial organization	physical	1	1	1	Affinity Capture-RNA
AIM41	YOR215C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ATP4	YPL078C	Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
EGD2	YHR193C	Alpha subunit of the nascent polypeptide-associated complex (NAC)	physical	1	1	1	Affinity Capture-RNA
ABP1	YCR088W	Actin-binding protein of the cortical actin cytoskeleton	physical	1	1	1	Affinity Capture-RNA
ACO1	YLR304C	Aconitase	physical	1	1	1	Affinity Capture-RNA
BBC1	YJL020C	Protein possibly involved in assembly of actin patches	physical	1	1	1	Affinity Capture-RNA
AKL1	YBR059C	Ser/Thr protein kinase	physical	1	1	1	Affinity Capture-RNA
FAR8	YMR029C	Protein involved in recovery from arrest in response to pheromone	physical	1	1	1	Affinity Capture-RNA
LSP1	YPL004C	Eisosome core component	physical	1	1	1	Affinity Capture-RNA
ADR1	YDR216W	Carbon source-responsive zinc-finger transcription factor	physical	1	1	1	Affinity Capture-RNA
ATP3	YBR039W	Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
MDH1	YKL085W	Mitochondrial malate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ISA2	YPR067W	Protein required for maturation of mitochondrial [4Fe-4S] proteins	physical	1	1	1	Affinity Capture-RNA
IRA2	YOL081W	GTPase-activating protein	physical	1	1	1	Affinity Capture-RNA
MMS2	YGL087C	Ubiquitin-conjugating enzyme variant	physical	1	1	1	Affinity Capture-RNA
HYP2	YEL034W	Translation elongation factor eIF-5A	physical	1	1	1	Affinity Capture-RNA
ATG29	YPL166W	Autophagy-specific protein	physical	1	1	1	Affinity Capture-RNA
ATG31	YDR022C	Autophagy-specific protein required for autophagosome formation	physical	1	1	1	Affinity Capture-RNA
ASA1	YPR085C	Subunit of the ASTRA complex, involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
ASA1	YPR085C	Subunit of the ASTRA complex, involved in chromatin remodeling	genetic	1	1	1	Positive Genetic
AAC3	YBR085W	Mitochondrial inner membrane ADP/ATP translocator	physical	1	1	1	Affinity Capture-RNA
FOL2	YGR267C	GTP-cyclohydrolase I, catalyzes first step in folic acid biosynthesis	physical	1	1	1	Affinity Capture-RNA
DCS1	YLR270W	Non-essential hydrolase involved in mRNA decapping	physical	1	1	1	Affinity Capture-RNA
ARF1	YDL192W	ADP-ribosylation factor	physical	1	1	1	Affinity Capture-RNA
CPR6	YLR216C	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
DMA2	YNL116W	Ubiquitin-protein ligase (E3)	physical	1	1	1	Affinity Capture-RNA
KIN1	YDR122W	S/T protein kinase	physical	1	1	1	Affinity Capture-RNA
MGE1	YOR232W	Mitochondrial matrix cochaperone	physical	1	1	1	Affinity Capture-RNA
AHP1	YLR109W	Thiol-specific peroxiredoxin	physical	1	1	1	Affinity Capture-RNA
CNB1	YKL190W	Calcineurin B	physical	1	1	1	Affinity Capture-RNA
GDE1	YPL110C	Glycerophosphocholine (GroPCho) phosphodiesterase	physical	1	1	1	Affinity Capture-RNA
GSP2	YOR185C	GTP binding protein (mammalian Ranp homolog)	physical	1	1	1	Affinity Capture-RNA
GSP1	YLR293C	Ran GTPase	physical	1	1	1	Affinity Capture-RNA
GSP1	YLR293C	Ran GTPase	genetic	1	1	1	Negative Genetic
GRR1	YJR090C	F-box protein component of an SCF ubiquitin-ligase complex	physical	1	1	1	Affinity Capture-RNA
GSF2	YML048W	Endoplasmic reticulum (ER) localized integral membrane protein	physical	1	1	1	Affinity Capture-RNA
HSH49	YOR319W	U2-snRNP associated splicing factor	physical	1	1	1	Affinity Capture-RNA
ILV5	YLR355C	Acetohydroxyacid reductoisomerase and mtDNA binding protein	physical	1	1	1	Affinity Capture-RNA
GID7	YCL039W	Subunit of GID Complex that binds directly to central component Vid30p	physical	1	1	1	Affinity Capture-RNA
HXT6	YDR343C	High-affinity glucose transporter	physical	1	1	1	Affinity Capture-RNA
AAT2	YLR027C	Cytosolic aspartate aminotransferase involved in nitrogen metabolism	physical	1	1	1	Affinity Capture-RNA
GET1	YGL020C	Subunit of the GET complex	physical	1	1	1	Affinity Capture-RNA
GLC8	YMR311C	Regulatory subunit of protein phosphatase 1 (Glc7p)	physical	1	1	1	Affinity Capture-RNA
BOL2	YGL220W	Cytosolic protein involved in repression of iron regulon transcription	physical	1	1	1	Affinity Capture-RNA
CMK1	YFR014C	Calmodulin-dependent protein kinase	physical	1	1	1	Affinity Capture-RNA
GYP6	YJL044C	GTPase-activating protein (GAP) for yeast Rab family member Ypt6p	physical	1	1	1	Affinity Capture-RNA
EGD1	YPL037C	Subunit beta1 of the nascent polypeptide-associated complex (NAC)	physical	1	1	1	Affinity Capture-RNA
AGX1	YFL030W	Alanine:glyoxylate aminotransferase (AGT)	physical	1	1	1	Affinity Capture-RNA
ADK1	YDR226W	Adenylate kinase, required for purine metabolism	physical	1	1	1	Affinity Capture-RNA
ARP10	YDR106W	Component of the dynactin complex	physical	1	1	1	Affinity Capture-RNA
DIP5	YPL265W	Dicarboxylic amino acid permease	physical	1	1	1	Affinity Capture-RNA
COF1	YLL050C	Cofilin, involved in pH-dependent actin filament depolarization	physical	1	1	1	Affinity Capture-RNA
COF1	YLL050C	Cofilin, involved in pH-dependent actin filament depolarization	genetic	1	1	1	Negative Genetic
GPD1	YDL022W	NAD-dependent glycerol-3-phosphate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ATG12	YBR217W	Ubiquitin-like modifier involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-RNA
ECM10	YEL030W	Heat shock protein of the Hsp70 family	physical	1	1	1	Affinity Capture-RNA
HSP104	YLL026W	Disaggregase	physical	1	1	1	Affinity Capture-RNA
CYC8	YBR112C	General transcriptional co-repressor	physical	1	1	1	Affinity Capture-RNA
DDC1	YPL194W	DNA damage checkpoint protein	physical	1	1	1	Affinity Capture-RNA
ARG4	YHR018C	Argininosuccinate lyase	physical	1	1	1	Affinity Capture-RNA
AYR1	YIL124W	Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase	physical	1	1	1	Affinity Capture-RNA
DYN2	YDR424C	Cytoplasmic light chain dynein, microtubule motor protein	physical	1	1	1	Affinity Capture-RNA
DMC1	YER179W	Meiosis-specific recombinase required for double-strand break repair	physical	1	1	1	Affinity Capture-RNA
MTC5	YDR128W	Subunit of SEACAT, a subcomplex of the SEA complex	physical	1	1	1	Affinity Capture-RNA
ERG10	YPL028W	Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase)	physical	1	1	1	Affinity Capture-RNA
MRS6	YOR370C	Rab escort protein	physical	1	1	1	Affinity Capture-RNA
HEM15	YOR176W	Ferrochelatase	physical	1	1	1	Affinity Capture-RNA
GIP2	YER054C	Putative regulatory subunit of protein phosphatase Glc7p	physical	1	1	1	Affinity Capture-RNA
GDB1	YPR184W	Glycogen debranching enzyme	physical	1	1	1	Affinity Capture-RNA
COS111	YBR203W	Protein required for antifungal drug ciclopirox olamine resistance	physical	1	1	1	Affinity Capture-RNA
GAC1	YOR178C	Regulatory subunit for Glc7p type-1 protein phosphatase (PP1)	physical	1	1	1	Affinity Capture-RNA
AIP1	YMR092C	Actin cortical patch component	physical	1	1	1	Affinity Capture-RNA
HRT3	YLR097C	Putative SCF-ubiquitin ligase F-box protein	physical	1	1	1	Affinity Capture-RNA
ADH3	YMR083W	Mitochondrial alcohol dehydrogenase isozyme III	physical	1	1	1	Affinity Capture-RNA
CAT5	YOR125C	Protein required for ubiquinone (Coenzyme Q) biosynthesis	physical	1	1	1	Affinity Capture-RNA
GID8	YMR135C	Subunit of GID Complex, binds strongly to central component Vid30p	physical	1	1	1	Affinity Capture-RNA
MOH1	YBL049W	Protein of unknown function, essential for stationary phase survival	physical	1	1	1	Affinity Capture-RNA
ARE2	YNR019W	Acyl-CoA:sterol acyltransferase	physical	1	1	1	Affinity Capture-RNA
APE1	YKL103C	Vacuolar aminopeptidase yscI	physical	1	1	1	Affinity Capture-RNA
HMF1	YER057C	Member of the p14.5 protein family	physical	1	1	1	Affinity Capture-RNA
BUD32	YGR262C	Protein kinase	physical	1	1	1	Affinity Capture-RNA
IPA1	YJR141W	Protein implicated in pre-mRNA processing and proteasomal degradation	genetic	1	1	1	Negative Genetic
CDC37	YDR168W	Essential Hsp90p co-chaperone	physical	1	1	1	Affinity Capture-RNA
LTP1	YPR073C	Protein phosphotyrosine phosphatase of unknown cellular role	physical	1	1	1	Affinity Capture-RNA
EST1	YLR233C	TLC1 RNA-associated factor involved in telomere length regulation	physical	1	1	1	Affinity Capture-RNA
HOM6	YJR139C	Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase)	physical	1	1	1	Affinity Capture-RNA
HUL5	YGL141W	Multiubiquitin chain assembly factor (E4)	physical	1	1	1	Affinity Capture-RNA
DSS4	YPR017C	Guanine nucleotide dissociation stimulator for Sec4p	physical	1	1	1	Affinity Capture-RNA
GLE1	YDL207W	Cytoplasmic nucleoporin required for polyadenylated mRNA export	physical	1	1	1	Affinity Capture-MS
GLE1	YDL207W	Cytoplasmic nucleoporin required for polyadenylated mRNA export	genetic	1	1	1	Negative Genetic
LRO1	YNR008W	Acyltransferase that converts diacylglycerol to triacylglycerol (TGA)	physical	1	1	1	Affinity Capture-RNA
AFR1	YDR085C	Protein required for pheromone-induced projection (shmoo) formation	physical	1	1	1	Affinity Capture-RNA
GRX1	YCL035C	Glutathione-dependent disulfide oxidoreductase	physical	1	1	1	Affinity Capture-RNA
CTF13	YMR094W	Subunit of the CBF3 complex	physical	1	1	1	Affinity Capture-RNA
DNL4	YOR005C	DNA ligase required for nonhomologous end-joining (NHEJ)	physical	1	1	1	Affinity Capture-RNA
ADD66	YKL206C	Protein involved in 20S proteasome assembly	physical	1	1	1	Affinity Capture-RNA
MNP1	YGL068W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
CBP3	YPL215W	Mitochondrial protein required for assembly of cytochrome bc1 complex	physical	1	1	1	Affinity Capture-RNA
AIM46	YHR199C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MCX1	YBR227C	Non-proteolytic ATPase of the AAA family	physical	1	1	1	Affinity Capture-RNA
CDC15	YAR019C	Hippo-like kinase of the Mitotic Exit Network	physical	1	1	1	Affinity Capture-RNA
GPG1	YGL121C	Proposed gamma subunit of the heterotrimeric G protein	physical	1	1	1	Affinity Capture-RNA
MAG2	YLR427W	Cytoplasmic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LAS1	YKR063C	Endonuclease involved in pre-rRNA processing at both ends of ITS2	physical	1	1	1	Affinity Capture-RNA
KEL2	YGR238C	Protein that negatively regulates mitotic exit	physical	1	1	1	Affinity Capture-RNA
GIS4	YML006C	CAAX box containing protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CWC21	YDR482C	Protein involved in RNA splicing by the spliceosome	physical	1	1	1	Affinity Capture-RNA
CHS1	YNL192W	Chitin synthase I	physical	1	1	1	Affinity Capture-RNA
HIR2	YOR038C	Subunit of HIR nucleosome assembly complex	physical	1	1	1	Affinity Capture-RNA
EMI2	YDR516C	Hexokinase expressed during growth with low glucose levels	physical	1	1	1	Affinity Capture-RNA
FAA1	YOR317W	Long chain fatty acyl-CoA synthetase	physical	1	1	1	Affinity Capture-RNA
CBP6	YBR120C	Mitochondrial protein required for translation of the COB mRNA	physical	1	1	1	Affinity Capture-RNA
AI1	Q0050	Reverse transcriptase required for splicing of the COX1 pre-mRNA	physical	1	1	1	Affinity Capture-RNA
HHT1	YBR010W	Histone H3	physical	1	1	1	Affinity Capture-RNA
DIA2	YOR080W	Origin-binding F-box protein	genetic	1	1	1	Negative Genetic
CTF4	YPR135W	Chromatin-associated protein	physical	1	1	1	Affinity Capture-RNA
IRA1	YBR140C	GTPase-activating protein	physical	1	1	1	Affinity Capture-RNA
MEK1	YOR351C	Meiosis-specific serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
BUD7	YOR299W	Member of the ChAPs family (Chs5p-Arf1p-binding proteins)	physical	1	1	1	Affinity Capture-RNA
BOP2	YLR267W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LHS1	YKL073W	Molecular chaperone of the endoplasmic reticulum lumen	physical	1	1	1	Affinity Capture-RNA
CCE1	YKL011C	Mitochondrial cruciform cutting endonuclease	physical	1	1	1	Affinity Capture-RNA
LSC1	YOR142W	Alpha subunit of succinyl-CoA ligase	physical	1	1	1	Affinity Capture-RNA
KIN28	YDL108W	Ser/Thr protein kinase and subunit of TFIIK, a TFIIH subassembly	genetic	1	1	1	Negative Genetic
HAL5	YJL165C	Snf1p-related nutrient-responsive protein kinase	physical	1	1	1	Affinity Capture-RNA
ATG20	YDL113C	Sorting nexin family member	physical	1	1	1	Affinity Capture-RNA
ATG4	YNL223W	Conserved cysteine protease required for autophagy	physical	1	1	1	Affinity Capture-RNA
ARF2	YDL137W	ADP-ribosylation factor	physical	1	1	1	Affinity Capture-RNA
MIH1	YMR036C	Protein tyrosine phosphatase	physical	1	1	1	Affinity Capture-RNA
AIR1	YIL079C	Zinc knuckle protein	physical	1	1	1	Two-hybrid
GSY1	YFR015C	Glycogen synthase	physical	1	1	1	Affinity Capture-RNA
HMG2	YLR450W	HMG-CoA reductase	physical	1	1	1	Affinity Capture-RNA
GTO1	YGR154C	Omega-class glutathione transferase	physical	1	1	1	Affinity Capture-RNA
LSM8	YJR022W	Lsm (Like Sm) protein	physical	1	1	1	Affinity Capture-RNA
MAS2	YHR024C	Alpha subunit of the mitochondrial processing protease (MPP)	physical	1	1	1	Affinity Capture-RNA
GDT1	YBR187W	Calcium and manganese transporter with higher affinity for Ca2+	physical	1	1	1	Affinity Capture-RNA
CTR1	YPR124W	High-affinity copper transporter of plasma membrane	physical	1	1	1	Affinity Capture-RNA
BTN2	YGR142W	v-SNARE binding protein	physical	1	1	1	Affinity Capture-RNA
MEH1	YKR007W	Subunit of the EGO/GSE complex	physical	1	1	1	Affinity Capture-RNA
MEH1	YKR007W	Subunit of the EGO/GSE complex	genetic	1	1	1	Negative Genetic
DUT1	YBR252W	Deoxyuridine triphosphate diphosphatase (dUTPase)	physical	1	1	1	Affinity Capture-RNA
CPR3	YML078W	Mitochondrial peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
LOS1	YKL205W	Nuclear pore protein	physical	1	1	1	Affinity Capture-RNA
CPA1	YOR303W	Small subunit of carbamoyl phosphate synthetase	physical	1	1	1	Affinity Capture-RNA
MIG1	YGL035C	Transcription factor involved in glucose repression	physical	1	1	1	Affinity Capture-RNA
DEF1	YKL054C	RNAPII degradation factor	physical	1	1	1	Affinity Capture-RNA
MMS4	YBR098W	Subunit of structure-specific Mms4p-Mus81p endonuclease	physical	1	1	1	Affinity Capture-RNA
IST3	YIR005W	Component of the U2 snRNP	genetic	1	1	1	Negative Genetic
DUF1	YOL087C	Ubiquitin-binding protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LEM3	YNL323W	Membrane protein of the plasma membrane and ER	physical	1	1	1	Affinity Capture-RNA
GBP2	YCL011C	Poly(A+) RNA-binding protein	physical	1	1	1	Affinity Capture-MS
GBP2	YCL011C	Poly(A+) RNA-binding protein	genetic	1	1	1	Negative Genetic
ISA1	YLL027W	Protein required for maturation of mitochondrial [4Fe-4S] proteins	physical	1	1	1	Affinity Capture-RNA
CBR1	YIL043C	Cytochrome b reductase and NADH-dependent reductase for Dph3p	physical	1	1	1	Affinity Capture-RNA
GPA1	YHR005C	Subunit of G protein involved in pheromone response	physical	1	1	1	Affinity Capture-RNA
FCF1	YDR339C	PINc domain endonuclease	physical	1	1	1	Affinity Capture-RNA
CLN2	YPL256C	G1 cyclin involved in regulation of the cell cycle	physical	1	1	1	Affinity Capture-RNA
DCS2	YOR173W	m(7)GpppX pyrophosphatase regulator	physical	1	1	1	Affinity Capture-RNA
FMP10	YER182W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ADH6	YMR318C	NADPH-dependent medium chain alcohol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ARG1	YOL058W	Arginosuccinate synthetase	physical	1	1	1	Affinity Capture-RNA
GCR2	YNL199C	Transcriptional activator of genes involved in glycolysis	physical	1	1	1	Affinity Capture-RNA
DAP1	YPL170W	Heme-binding protein	physical	1	1	1	Affinity Capture-RNA
ARA1	YBR149W	NADP+ dependent arabinose dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ADE6	YGR061C	Formylglycinamidine-ribonucleotide (FGAM)-synthetase	physical	1	1	1	Affinity Capture-RNA
APE2	YKL157W	Aminopeptidase yscII	physical	1	1	1	Affinity Capture-RNA
CYS3	YAL012W	Cystathionine gamma-lyase	physical	1	1	1	Affinity Capture-RNA
ATG5	YPL149W	Conserved protein involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-RNA
APE3	YBR286W	Vacuolar aminopeptidase Y	physical	1	1	1	Affinity Capture-RNA
CDH1	YGL003C	Activator of anaphase-promoting complex/cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
MET16	YPR167C	3'-phosphoadenylsulfate reductase	physical	1	1	1	Affinity Capture-RNA
CMG1	YLR271W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRX1	YER077C	Protein that associates with mitochondrial ribosome	physical	1	1	1	Affinity Capture-RNA
CIN5	YOR028C	Basic leucine zipper (bZIP) transcription factor of the yAP-1 family	physical	1	1	1	Affinity Capture-RNA
IGO1	YNL157W	Protein required for initiation of G0 program	physical	1	1	1	Affinity Capture-RNA
MGT1	YDL200C	DNA repair methyltransferase (6-O-methylguanine-DNA methylase)	physical	1	1	1	Affinity Capture-RNA
CNM1	YBR063C	Molecular tether on nuclear membrane	physical	1	1	1	Affinity Capture-RNA
CHZ1	YER030W	Histone chaperone for Htz1p/H2A-H2B dimer	physical	1	1	1	Affinity Capture-RNA
BNA5	YLR231C	Kynureninase	physical	1	1	1	Affinity Capture-RNA
JJJ1	YNL227C	Co-chaperone that stimulates the ATPase activity of Ssa1p	physical	1	1	1	Affinity Capture-RNA
FMP48	YGR052W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
APM4	YOL062C	Cargo-binding mu subunit of AP-2	physical	1	1	1	Affinity Capture-RNA
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	physical	1	1	1	Affinity Capture-RNA
ESS1	YJR017C	Peptidylprolyl-cis/trans-isomerase (PPIase)	genetic	1	1	1	Negative Genetic
KKQ8	YKL168C	Putative serine/threonine protein kinase with unknown cellular role	physical	1	1	1	Affinity Capture-RNA
MLP2	YIL149C	Myosin-like protein associated with the nuclear envelope	genetic	1	1	1	Synthetic Rescue
ATP5	YDR298C	Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ATP7	YKL016C	Subunit d of the stator stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ADH5	YBR145W	Alcohol dehydrogenase isoenzyme V	physical	1	1	1	Affinity Capture-RNA
CUE5	YOR042W	Ubiquitin-binding protein	physical	1	1	1	Affinity Capture-RNA
DCK1	YLR422W	Dock family protein (Dedicator Of CytoKinesis), homolog of human DOCK1	physical	1	1	1	Affinity Capture-RNA
DAD1	YDR016C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
MTQ2	YDR140W	S-adenosylmethionine-dependent methyltransferase	physical	1	1	1	Affinity Capture-RNA
DAD2	YKR083C	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
ARP1	YHR129C	Actin-related protein of the dynactin complex	physical	1	1	1	Affinity Capture-RNA
DID4	YKL002W	Class E Vps protein of the ESCRT-III complex	physical	1	1	1	Affinity Capture-RNA
ADE2	YOR128C	Phosphoribosylaminoimidazole carboxylase	physical	1	1	1	Affinity Capture-RNA
ADE8	YDR408C	Phosphoribosyl-glycinamide transformylase	physical	1	1	1	Affinity Capture-RNA
ALR1	YOL130W	Plasma membrane Mg(2+) transporter	physical	1	1	1	Affinity Capture-RNA
ATG1	YGL180W	Protein serine/threonine kinase	physical	1	1	1	Affinity Capture-RNA
ATG13	YPR185W	Regulatory subunit of the Atg1p signaling complex	physical	1	1	1	Affinity Capture-RNA
ARH1	YDR376W	Oxidoreductase of the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
ATP20	YPR020W	Subunit g of the mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CPR2	YHR057C	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
DAL82	YNL314W	Positive regulator of allophanate inducible genes	physical	1	1	1	Affinity Capture-RNA
EBS1	YDR206W	Protein involved in translation inhibition and nonsense-mediated decay	physical	1	1	1	Affinity Capture-RNA
ECM19	YLR390W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GFD1	YMR255W	Coiled-coiled protein of unknown function	genetic	1	1	1	Dosage Rescue
GIP1	YBR045C	Meiosis-specific regulatory subunit of the Glc7p protein phosphatase	physical	1	1	1	Affinity Capture-RNA
GEP4	YHR100C	Mitochondrial phosphatidylglycerophosphatase (PGP phosphatase)	physical	1	1	1	Affinity Capture-RNA
GRX5	YPL059W	Glutathione-dependent oxidoreductase	physical	1	1	1	Affinity Capture-RNA
GTR1	YML121W	Subunit of a TORC1-stimulating GTPase and the EGO/GSE complex	physical	1	1	1	Affinity Capture-RNA
GZF3	YJL110C	GATA zinc finger protein	physical	1	1	1	Affinity Capture-RNA
GDS1	YOR355W	Protein involved in histone H4 acetylation at ribosomal protein genes	physical	1	1	1	Affinity Capture-RNA
IPK1	YDR315C	Inositol 1,3,4,5,6-pentakisphosphate 2-kinase	physical	1	1	1	Affinity Capture-RNA
BSC5	YNR069C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
KAR4	YCL055W	Transcription factor required for response to pheromones	physical	1	1	1	Affinity Capture-RNA
IBA57	YJR122W	Protein involved in incorporating iron-sulfur clusters into proteins	physical	1	1	1	Affinity Capture-RNA
ATG19	YOL082W	Receptor protein for the cytoplasm-to-vacuole targeting (Cvt) pathway	physical	1	1	1	Affinity Capture-RNA
LST7	YGR057C	Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p	physical	1	1	1	Affinity Capture-RNA
BIT61	YJL058C	Subunit of TORC2 membrane-associated complex	physical	1	1	1	Affinity Capture-RNA
GCN4	YEL009C	bZIP transcriptional activator of amino acid biosynthetic genes	physical	1	1	1	Affinity Capture-RNA
MOB2	YFL034C-B	Activator of Cbk1p kinase	genetic	1	1	1	Positive Genetic
MPD2	YOL088C	Member of the protein disulfide isomerase (PDI) family	physical	1	1	1	Affinity Capture-RNA
MRP8	YKL142W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MAD2	YJL030W	Component of the spindle-assembly checkpoint complex	physical	1	1	1	Affinity Capture-RNA
MSN5	YDR335W	Karyopherin	physical	1	1	1	Affinity Capture-RNA
HAA1	YPR008W	Transcriptional activator involved in adaptation to weak acid stress	physical	1	1	1	Affinity Capture-RNA
COG2	YGR120C	Essential component of the conserved oligomeric Golgi complex	genetic	1	1	1	Positive Genetic
HSP10	YOR020C	Mitochondrial matrix co-chaperonin	physical	1	1	1	Affinity Capture-RNA
MMR1	YLR190W	Phosphorylated protein of the mitochondrial outer membrane	genetic	1	1	1	Negative Genetic
CLG1	YGL215W	Cyclin-like protein that interacts with Pho85p	physical	1	1	1	Affinity Capture-RNA
ACA1	YER045C	ATF/CREB family basic leucine zipper (bZIP) transcription factor	physical	1	1	1	Affinity Capture-RNA
MND2	YIR025W	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
ATG34	YOL083W	Receptor protein involved in selective autophagy during starvation	physical	1	1	1	Affinity Capture-RNA
AIM3	YBR108W	Protein that inhibits barbed-end actin filament elongation	genetic	1	1	1	Negative Genetic
ATG27	YJL178C	Type I membrane protein involved in autophagy and the Cvt pathway	physical	1	1	1	Affinity Capture-RNA
COQ5	YML110C	2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase	physical	1	1	1	Affinity Capture-RNA
ACF4	YJR083C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FOB1	YDR110W	Nucleolar protein that binds the rDNA replication fork barrier site	physical	1	1	1	Affinity Capture-RNA
ISY1	YJR050W	Member of the NineTeen Complex (NTC)	genetic	1	1	1	Negative Genetic
ECI1	YLR284C	Peroxisomal delta3,delta2-enoyl-CoA isomerase	physical	1	1	1	Affinity Capture-RNA
MNS1	YJR131W	Alpha-1,2-mannosidase	physical	1	1	1	Affinity Capture-RNA
AIM18	YHR198C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MVP1	YMR004W	Protein required for sorting proteins to the vacuole	physical	1	1	1	Affinity Capture-RNA
CTL1	YMR180C	RNA 5'-triphosphatase, localizes to both the nucleus and cytoplasm	physical	1	1	1	Affinity Capture-RNA
BNA6	YFR047C	Quinolinate phosphoribosyl transferase	physical	1	1	1	Affinity Capture-RNA
CHA4	YLR098C	DNA binding transcriptional activator	physical	1	1	1	Affinity Capture-RNA
ADY3	YDL239C	Protein required for spore wall formation	physical	1	1	1	Affinity Capture-RNA
DET1	YDR051C	Acid phosphatase	physical	1	1	1	Affinity Capture-RNA
AIM7	YDR063W	Protein that interacts with Arp2/3 complex	physical	1	1	1	Affinity Capture-RNA
FMP16	YDR070C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CNL1	YDR357C	Subunit of the BLOC-1 complex involved in endosomal maturation	physical	1	1	1	Affinity Capture-RNA
IRC6	YFR043C	Clathrin coat accessory factor	physical	1	1	1	Affinity Capture-RNA
MST27	YGL051W	Putative integral membrane protein, involved in vesicle formation	physical	1	1	1	Affinity Capture-RNA
KTI12	YKL110C	Protein that plays a role in modification of tRNA wobble nucleosides	physical	1	1	1	Affinity Capture-RNA
CUE2	YKL090W	Ubiquitin-binding endonuclease involved in mRNA decay	physical	1	1	1	Affinity Capture-RNA
ASK10	YGR097W	Regulator of the Fps1p glycerol channel	physical	1	1	1	Affinity Capture-RNA
JLP1	YLL057C	Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase	physical	1	1	1	Affinity Capture-RNA
ELP6	YMR312W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	genetic	1	1	1	Negative Genetic
MET14	YKL001C	Adenylylsulfate kinase	physical	1	1	1	Affinity Capture-RNA
MDY2	YOL111C	Protein involved in inserting tail-anchored proteins into ER membranes	physical	1	1	1	Affinity Capture-RNA
BLI1	YKL061W	Subunit of the BLOC-1 complex involved in endosomal maturation	physical	1	1	1	Affinity Capture-RNA
DSE3	YOR264W	Daughter cell-specific protein, may help establish daughter fate	physical	1	1	1	Affinity Capture-RNA
CUB1	YPL260W	Conserved fungal gene linked to DNA repair and proteasome function	physical	1	1	1	Affinity Capture-RNA
AIM4	YBR194W	Protein proposed to be associated with the nuclear pore complex	physical	1	1	1	Affinity Capture-RNA
AIM4	YBR194W	Protein proposed to be associated with the nuclear pore complex	genetic	1	1	1	Negative Genetic
BOS1	YLR078C	v-SNARE (vesicle specific SNAP receptor)	physical	1	1	1	Affinity Capture-RNA
BOS1	YLR078C	v-SNARE (vesicle specific SNAP receptor)	genetic	1	1	1	Negative Genetic
GMH1	YKR030W	Golgi membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
APC5	YOR249C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
APC5	YOR249C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	genetic	1	1	1	Negative Genetic
APC4	YDR118W	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
APC9	YLR102C	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C)	physical	1	1	1	Affinity Capture-RNA
CWC15	YDR163W	Non-essential protein involved in pre-mRNA splicing	physical	1	1	1	Affinity Capture-RNA
CWC15	YDR163W	Non-essential protein involved in pre-mRNA splicing	genetic	1	1	1	Negative Genetic
COG7	YGL005C	Component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
COG6	YNL041C	Component of the conserved oligomeric Golgi complex	physical	1	1	1	Affinity Capture-RNA
ELP4	YPL101W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	physical	1	1	1	Affinity Capture-RNA
IKI1	YHR187W	Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex	physical	1	1	1	Affinity Capture-RNA
MDR1	YGR100W	Cytoplasmic GTPase-activating protein	physical	1	1	1	Affinity Capture-RNA
MRP2	YPR166C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
CHL1	YPL008W	Probable DNA helicase	physical	1	1	1	Affinity Capture-RNA
CDC21	YOR074C	Thymidylate synthase	physical	1	1	1	Affinity Capture-RNA
CST6	YIL036W	Basic leucine zipper (bZIP) transcription factor from ATF/CREB family	physical	1	1	1	Affinity Capture-RNA
BRE5	YNR051C	Ubiquitin protease cofactor	genetic	1	1	1	Negative Genetic
CET1	YPL228W	RNA 5'-triphosphatase involved in mRNA 5' capping	physical	1	1	1	Affinity Capture-RNA
JIP5	YPR169W	Protein required for biogenesis of the large ribosomal subunit	physical	1	1	1	Affinity Capture-RNA
ARP6	YLR085C	Actin-related protein that binds nucleosomes	physical	1	1	1	Affinity Capture-RNA
GCR1	YPL075W	Transcriptional activator of genes involved in glycolysis	physical	1	1	1	Affinity Capture-RNA
MSN2	YMR037C	Stress-responsive transcriptional activator	physical	1	1	1	Affinity Capture-RNA
ARP5	YNL059C	Nuclear actin-related protein involved in chromatin remodeling	physical	1	1	1	Affinity Capture-RNA
IES2	YNL215W	Protein that associates with the INO80 chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
IES3	YLR052W	Subunit of the INO80 chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
IES4	YOR189W	Component of the INO80 chromatiin remodeling complex	physical	1	1	1	Affinity Capture-RNA
IES6	YEL044W	Component of the INO80 chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
HOS3	YPL116W	Trichostatin A-insensitive homodimeric histone deacetylase (HDAC)	physical	1	1	1	Affinity Capture-RNA
MIF2	YKL089W	Centromeric CDEIII region binding protein	physical	1	1	1	Affinity Capture-RNA
APN1	YKL114C	Major apurinic/apyrimidinic endonuclease	physical	1	1	1	Affinity Capture-RNA
BUR6	YER159C	Subunit of a heterodimeric NC2 transcription regulator complex	physical	1	1	1	Affinity Capture-RNA
ATG8	YBL078C	Ub-like protein	physical	1	1	1	Affinity Capture-RNA
BUB1	YGR188C	Protein kinase involved in the cell cycle checkpoint into anaphase	physical	1	1	1	Affinity Capture-RNA
MOT2	YER068W	Ubiquitin-protein ligase subunit of the CCR4-NOT complex	genetic	1	1	1	Dosage Growth Defect
CLB5	YPR120C	B-type cyclin involved in DNA replication during S phase	physical	1	1	1	Affinity Capture-RNA
CLC1	YGR167W	Clathrin light chain	physical	1	1	1	Affinity Capture-RNA
COX18	YGR062C	Protein required for membrane insertion of C-terminus of Cox2p	physical	1	1	1	Affinity Capture-RNA
CTF8	YHR191C	Subunit of a complex with Ctf18p	physical	1	1	1	Affinity Capture-RNA
DBF4	YDR052C	Regulatory subunit of Cdc7p-Dbf4p kinase complex	genetic	1	1	1	Positive Genetic
FRQ1	YDR373W	N-myristoylated calcium-binding protein	physical	1	1	1	Affinity Capture-RNA
FRQ1	YDR373W	N-myristoylated calcium-binding protein	genetic	1	1	1	Positive Genetic
GIM4	YEL003W	Subunit of the heterohexameric cochaperone prefoldin complex	physical	1	1	1	Affinity Capture-RNA
ECO1	YFR027W	Acetyltransferase required for sister chromatid cohesion	physical	1	1	1	Affinity Capture-RNA
GEA1	YJR031C	Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs)	physical	1	1	1	Affinity Capture-RNA
HNT1	YDL125C	Adenosine 5'-monophosphoramidase	physical	1	1	1	Affinity Capture-RNA
HSP150	YJL159W	O-mannosylated heat shock protein	physical	1	1	1	Affinity Capture-RNA
IOC2	YLR095C	Subunit of the Isw1b complex	physical	1	1	1	Affinity Capture-RNA
KAR3	YPR141C	Minus-end-directed microtubule motor	physical	1	1	1	Affinity Capture-RNA
MDM12	YOL009C	Mitochondrial outer membrane protein, ERMES complex subunit	physical	1	1	1	Affinity Capture-RNA
MPS1	YDL028C	Dual-specificity kinase	physical	1	1	1	Affinity Capture-RNA
MPS1	YDL028C	Dual-specificity kinase	genetic	1	1	1	Negative Genetic
MTH1	YDR277C	Negative regulator of the glucose-sensing signal transduction pathway	physical	1	1	1	Affinity Capture-RNA
MYO3	YKL129C	One of two type I myosins	physical	1	1	1	Affinity Capture-RNA
MYO5	YMR109W	One of two type I myosin motors	physical	1	1	1	Affinity Capture-RNA
FIG4	YNL325C	Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase	physical	1	1	1	Affinity Capture-RNA
ATG2	YNL242W	Peripheral membrane protein required for autophagic vesicle formation	physical	1	1	1	Affinity Capture-RNA
JNM1	YMR294W	Component of the yeast dynactin complex	physical	1	1	1	Affinity Capture-RNA
CIN1	YOR349W	Tubulin folding factor D involved in beta-tubulin (Tub2p) folding	physical	1	1	1	Affinity Capture-RNA
MRPS9	YBR146W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
HAP1	YLR256W	Zinc finger transcription factor	physical	1	1	1	Affinity Capture-RNA
GAL4	YPL248C	DNA-binding transcription factor required for activating GAL genes	physical	1	1	1	Affinity Capture-RNA
IMP1	YMR150C	Catalytic subunit of mitochondrial inner membrane peptidase complex	physical	1	1	1	Affinity Capture-RNA
KAR2	YJL034W	ATPase involved in protein import into the ER	physical	1	1	1	Affinity Capture-RNA
EMP47	YFL048C	Integral membrane component of ER-derived COPII-coated vesicles	physical	1	1	1	Affinity Capture-RNA
MBF1	YOR298C-A	Transcriptional coactivator	physical	1	1	1	Affinity Capture-RNA
MST28	YAR033W	Putative integral membrane protein, involved in vesicle formation	physical	1	1	1	Affinity Capture-RNA
ERV46	YAL042W	Protein localized to COPII-coated vesicles	physical	1	1	1	Affinity Capture-RNA
GAP1	YKR039W	General amino acid permease	physical	1	1	1	Affinity Capture-RNA
CSG2	YBR036C	Endoplasmic reticulum membrane protein	physical	1	1	1	Affinity Capture-RNA
EMC1	YCL045C	Member of conserved endoplasmic reticulum membrane complex	physical	1	1	1	Affinity Capture-RNA
BNR1	YIL159W	Formin	physical	1	1	1	Affinity Capture-RNA
MUD2	YKL074C	Protein involved in early pre-mRNA splicing	physical	1	1	1	Affinity Capture-Western
MUD2	YKL074C	Protein involved in early pre-mRNA splicing	genetic	1	1	1	Negative Genetic
MSO1	YNR049C	Lipid-interacting protein in SNARE complex assembly machinery	physical	1	1	1	Affinity Capture-RNA
FCP1	YMR277W	Carboxy-terminal domain (CTD) phosphatase	physical	1	1	1	Affinity Capture-RNA
EMC5	YIL027C	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
ARG82	YDR173C	Inositol polyphosphate multikinase (IPMK)	physical	1	1	1	Affinity Capture-RNA
CAT8	YMR280C	Zinc cluster transcriptional activator	physical	1	1	1	Affinity Capture-RNA
MCM7	YBR202W	Component of the Mcm2-7 hexameric helicase complex	physical	1	1	1	Affinity Capture-RNA
ERG25	YGR060W	C-4 methyl sterol oxidase	physical	1	1	1	Affinity Capture-RNA
ESC1	YMR219W	Protein involved in telomeric silencing	genetic	1	1	1	Negative Genetic
HCH1	YNL281W	Heat shock protein regulator	physical	1	1	1	Affinity Capture-RNA
AKR1	YDR264C	Palmitoyl transferase involved in protein palmitoylation	physical	1	1	1	Affinity Capture-RNA
INP53	YOR109W	Polyphosphatidylinositol phosphatase	physical	1	1	1	Affinity Capture-RNA
GAD1	YMR250W	Glutamate decarboxylase	physical	1	1	1	Affinity Capture-RNA
DOT1	YDR440W	Nucleosomal histone H3-Lys79 methylase	physical	1	1	1	Affinity Capture-RNA
HFA1	YMR207C	Mitochondrial acetyl-coenzyme A carboxylase	physical	1	1	1	Affinity Capture-RNA
AAD3	YCR107W	Putative aryl-alcohol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
COQ1	YBR003W	Hexaprenyl pyrophosphate synthetase	physical	1	1	1	Affinity Capture-RNA
CDC19	YAL038W	Pyruvate kinase	physical	1	1	1	Affinity Capture-MS
MET28	YIR017C	bZIP transcriptional activator in the Cbf1p-Met4p-Met28p complex	physical	1	1	1	Affinity Capture-RNA
MET31	YPL038W	Zinc-finger DNA-binding transcription factor	physical	1	1	1	Affinity Capture-RNA
MET32	YDR253C	Zinc-finger DNA-binding transcription factor	physical	1	1	1	Affinity Capture-RNA
MID2	YLR332W	O-glycosylated plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
MON1	YGL124C	Subunit of a heterodimeric guanine nucleotide exchange factor (GEF)	physical	1	1	1	Affinity Capture-RNA
GPR1	YDL035C	Plasma membrane G protein coupled receptor (GPCR)	physical	1	1	1	Affinity Capture-RNA
CUS2	YNL286W	Putative checkpoint factor in transcription	physical	1	1	1	Affinity Capture-RNA
DJP1	YIR004W	ER-associated chaperone involved in protein targeting	physical	1	1	1	Affinity Capture-RNA
DPC29	YGR021W	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LSB5	YCL034W	Protein involved in membrane-trafficking events at plasma membrane	physical	1	1	1	Affinity Capture-RNA
ARK1	YNL020C	Ser/Thr protein kinase	physical	1	1	1	Affinity Capture-RNA
BAT2	YJR148W	Cytosolic branched-chain amino acid (BCAA) aminotransferase	physical	1	1	1	Affinity Capture-RNA
ADY4	YLR227C	Structural component of the meiotic outer plaque	physical	1	1	1	Affinity Capture-RNA
MSB4	YOL112W	GTPase-activating protein of the Ras superfamily	physical	1	1	1	Affinity Capture-RNA
ACF2	YLR144C	Intracellular beta-1,3-endoglucanase	physical	1	1	1	Affinity Capture-RNA
ENT2	YLR206W	Epsin-like protein required for endocytosis and actin patch assembly	physical	1	1	1	Two-hybrid
CHS5	YLR330W	Component of the exomer complex	physical	1	1	1	Affinity Capture-RNA
GTT1	YIR038C	ER associated glutathione S-transferase	physical	1	1	1	Affinity Capture-RNA
GTT2	YLL060C	Glutathione S-transferase capable of homodimerization	physical	1	1	1	Affinity Capture-RNA
CCH1	YGR217W	Voltage-gated high-affinity calcium channel	physical	1	1	1	Affinity Capture-RNA
CQD1	YPL109C	UbiB family mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
CPR7	YJR032W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
HHT2	YNL031C	Histone H3	physical	1	1	1	Affinity Capture-RNA
COX17	YLL009C	Copper metallochaperone that transfers copper to Sco1p and Cox11p	physical	1	1	1	Affinity Capture-RNA
ERT1	YBR239C	Transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
MRPS35	YGR165W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
HPA2	YPR193C	Tetrameric histone acetyltransferase	physical	1	1	1	Affinity Capture-RNA
ERV29	YGR284C	Protein localized to COPII-coated vesicles	physical	1	1	1	Affinity Capture-RNA
BSD2	YBR290W	Heavy metal ion homeostasis protein	physical	1	1	1	Affinity Capture-RNA
CYB2	YML054C	Cytochrome b2 (L-lactate cytochrome-c oxidoreductase)	physical	1	1	1	Affinity Capture-RNA
CAP2	YIL034C	Beta subunit of the capping protein heterodimer (Cap1p and Cap2p)	physical	1	1	1	Affinity Capture-RNA
HAC1	YFL031W	Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog)	physical	1	1	1	Affinity Capture-RNA
EIS1	YMR031C	Component of the eisosome required for proper eisosome assembly	physical	1	1	1	Affinity Capture-RNA
MNT4	YNR059W	Putative alpha-1,3-mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
BET4	YJL031C	Alpha subunit of Type II geranylgeranyltransferase	physical	1	1	1	Affinity Capture-RNA
ARL3	YPL051W	ARF-like small GTPase of the RAS superfamily	physical	1	1	1	Affinity Capture-RNA
DOM34	YNL001W	Protein that facilitates ribosomal subunit dissociation	physical	1	1	1	Affinity Capture-RNA
ERF2	YLR246W	Subunit of a palmitoyltransferase	physical	1	1	1	Affinity Capture-RNA
COS3	YML132W	Endosomal protein involved in turnover of plasma membrane proteins	physical	1	1	1	Affinity Capture-RNA
COX14	YML129C	Mitochondrial cytochrome c oxidase (complex IV) assembly factor	physical	1	1	1	Affinity Capture-RNA
CLB3	YDL155W	B-type cyclin involved in cell cycle progression	physical	1	1	1	Affinity Capture-RNA
MON2	YNL297C	Protein with a role in endocytosis and vacuole integrity	physical	1	1	1	Affinity Capture-RNA
CBP1	YJL209W	Mitochondrial protein, regulator of COB mRNA stability and translation	physical	1	1	1	Affinity Capture-RNA
INP51	YIL002C	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase	physical	1	1	1	Affinity Capture-RNA
EAF6	YJR082C	Subunit of the NuA4 acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
EAF7	YNL136W	Subunit of the NuA4 histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
ERG28	YER044C	Endoplasmic reticulum membrane protein	physical	1	1	1	Affinity Capture-RNA
EFT1	YOR133W	Elongation factor 2 (EF-2), also encoded by EFT2	physical	1	1	1	Affinity Capture-MS
INN1	YNL152W	Essential protein that associates with contractile actomyosin ring	physical	1	1	1	Affinity Capture-RNA
ASG1	YIL130W	Zinc cluster protein proposed to be a transcriptional regulator	physical	1	1	1	Affinity Capture-RNA
MCR1	YKL150W	Mitochondrial NADH-cytochrome b5 reductase	physical	1	1	1	Affinity Capture-RNA
MOG1	YJR074W	Conserved nuclear protein that interacts with GTP-Gsp1p	physical	1	1	1	Affinity Capture-RNA
GDH3	YAL062W	NADP(+)-dependent glutamate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
CRF1	YDR223W	Transcriptional corepressor	physical	1	1	1	Affinity Capture-RNA
FOX2	YKR009C	3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase	physical	1	1	1	Affinity Capture-RNA
MLS1	YNL117W	Malate synthase, enzyme of the glyoxylate cycle	physical	1	1	1	Affinity Capture-RNA
GAB1	YLR459W	Subunit of the glycosylphosphatidylinositol transamidase complex	physical	1	1	1	Affinity Capture-RNA
GAB1	YLR459W	Subunit of the glycosylphosphatidylinositol transamidase complex	genetic	1	1	1	Positive Genetic
IXR1	YKL032C	Transcriptional repressor that regulates hypoxic genes during normoxia	physical	1	1	1	Affinity Capture-RNA
DPM1	YPR183W	Dolichol phosphate mannose (Dol-P-Man) synthase of ER membrane	genetic	1	1	1	Negative Genetic
ERG5	YMR015C	C-22 sterol desaturase	physical	1	1	1	Affinity Capture-RNA
LYS21	YDL131W	Homocitrate synthase isozyme	physical	1	1	1	Affinity Capture-RNA
ASN2	YGR124W	Asparagine synthetase	physical	1	1	1	Affinity Capture-RNA
MHP1	YJL042W	Microtubule-associated protein involved in microtubule organization	physical	1	1	1	Affinity Capture-RNA
BOP3	YNL042W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
BI3	Q0115	Mitochondrial mRNA maturase	physical	1	1	1	Affinity Capture-RNA
ILV6	YCL009C	Regulatory subunit of acetolactate synthase	physical	1	1	1	Affinity Capture-RNA
MEU1	YLR017W	Methylthioadenosine phosphorylase (MTAP)	physical	1	1	1	Affinity Capture-RNA
ADI1	YMR009W	Acireductone dioxygenease involved in methionine salvage pathway	physical	1	1	1	Affinity Capture-RNA
CRG1	YHR209W	S-AdoMet-dependent methyltransferase involved in lipid homeostasis	physical	1	1	1	Affinity Capture-RNA
ARO8	YGL202W	Aromatic aminotransferase I	physical	1	1	1	Affinity Capture-RNA
IDS2	YJL146W	Protein involved in modulation of Ime2p activity during meiosis	physical	1	1	1	Affinity Capture-RNA
EMC6	YLL014W	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
MDM1	YML104C	PtdIns-3-P binding protein that tethers the ER to vacuoles at NVJs	physical	1	1	1	Affinity Capture-RNA
ARO80	YDR421W	Zinc finger transcriptional activator of the Zn2Cys6 family	physical	1	1	1	Affinity Capture-RNA
AUS1	YOR011W	Plasma membrane sterol transporter of the ATP-binding cassette family	physical	1	1	1	Affinity Capture-RNA
INH1	YDL181W	Protein that inhibits ATP hydrolysis by the F1F0-ATP synthase	physical	1	1	1	Affinity Capture-RNA
MET4	YNL103W	Leucine-zipper transcriptional activator	physical	1	1	1	Affinity Capture-RNA
BUG1	YDL099W	Cis-golgi localized protein involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
GTA1	YEL043W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FMP27	YLR454W	Protein with structural similarity to lipid transport protein Vps13p	physical	1	1	1	Affinity Capture-RNA
ATP17	YDR377W	Subunit f of the F0 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
IZH4	YOL101C	Membrane protein involved in zinc ion homeostasis	physical	1	1	1	Affinity Capture-RNA
GLR1	YPL091W	Cytosolic and mitochondrial glutathione oxidoreductase	physical	1	1	1	Affinity Capture-RNA
HSP26	YBR072W	Small heat shock protein (sHSP) with chaperone activity	physical	1	1	1	Affinity Capture-RNA
ATP18	YML081C-A	Subunit of the mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ATX1	YNL259C	Cytosolic copper metallochaperone	physical	1	1	1	Affinity Capture-RNA
CAT2	YML042W	Carnitine acetyl-CoA transferase	physical	1	1	1	Affinity Capture-RNA
ADE1	YAR015W	N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase	physical	1	1	1	Affinity Capture-RNA
CBS2	YDR197W	Mitochondrial translational activator of the COB mRNA	physical	1	1	1	Affinity Capture-RNA
HSP31	YDR533C	Methylglyoxalase that converts methylglyoxal to D-lactate	physical	1	1	1	Affinity Capture-RNA
BTS1	YPL069C	Geranylgeranyl diphosphate synthase (GGPPS)	physical	1	1	1	Affinity Capture-RNA
FRK1	YPL141C	Protein kinase of unknown cellular role	physical	1	1	1	Affinity Capture-RNA
FRA1	YLL029W	Protein involved in negative regulation of iron regulon transcription	physical	1	1	1	Affinity Capture-RNA
CSF1	YLR087C	Protein with structural similarity to lipid transport protein Vps13p	physical	1	1	1	Affinity Capture-RNA
CUE4	YML101C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
BUD22	YMR014W	Protein required for rRNA maturation and ribosomal subunit biogenesis	physical	1	1	1	Affinity Capture-RNA
BNS1	YGR230W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
COX15	YER141W	Heme a synthase	physical	1	1	1	Affinity Capture-RNA
EGT2	YNL327W	Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase	physical	1	1	1	Affinity Capture-RNA
BCH2	YKR027W	Member of the ChAPs (Chs5p-Arf1p-binding proteins) family	physical	1	1	1	Affinity Capture-RNA
HEM14	YER014W	Protoporphyrinogen oxidase	physical	1	1	1	Affinity Capture-RNA
IFH1	YLR223C	Coactivator, regulates transcription of ribosomal protein (RP) genes	physical	1	1	1	Affinity Capture-RNA
CST26	YBR042C	Acyltransferase	physical	1	1	1	Affinity Capture-RNA
CIR1	YGR207C	Mitochondrial protein that interacts with frataxin (Yfh1p)	physical	1	1	1	Affinity Capture-RNA
AIM45	YPR004C	Putative ortholog of mammalian ETF-alpha	physical	1	1	1	Affinity Capture-RNA
HUL4	YJR036C	Protein with similarity to hect domain E3 ubiquitin-protein ligases	physical	1	1	1	Affinity Capture-RNA
DDR2	YOL052C-A	Multi-stress response protein	physical	1	1	1	Affinity Capture-RNA
BAP3	YDR046C	Amino acid permease	physical	1	1	1	Affinity Capture-RNA
CFD1	YIL003W	Highly conserved iron-sulfur cluster binding protein	physical	1	1	1	Affinity Capture-RNA
MXR1	YER042W	Methionine-S-sulfoxide reductase	physical	1	1	1	Affinity Capture-RNA
MF(ALPHA)1	YPL187W	Mating pheromone alpha-factor, made by alpha cells	physical	1	1	1	Affinity Capture-RNA
FMP32	YFL046W	Regulator of mitochondrial proline metabolism	physical	1	1	1	Affinity Capture-RNA
GPI2	YPL076W	Protein involved in the synthesis of GlcNAc-PI	physical	1	1	1	Affinity Capture-RNA
GPI2	YPL076W	Protein involved in the synthesis of GlcNAc-PI	genetic	1	1	1	Negative Genetic
ERI1	YPL096C-A	Endoplasmic reticulum membrane protein that binds and inhibits Ras2p	physical	1	1	1	Affinity Capture-RNA
MSS11	YMR164C	Transcription factor	physical	1	1	1	Affinity Capture-RNA
ERV15	YBR210W	Protein involved in export of proteins from the endoplasmic reticulum	physical	1	1	1	Affinity Capture-RNA
BNA7	YDR428C	Formylkynurenine formamidase	physical	1	1	1	Affinity Capture-RNA
ATP15	YPL271W	Epsilon subunit of the F1 sector of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
ATP16	YDL004W	Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
CUE1	YMR264W	Ubiquitin-binding protein	physical	1	1	1	Affinity Capture-RNA
KRE2	YDR483W	Alpha1,2-mannosyltransferase of the Golgi	physical	1	1	1	Affinity Capture-RNA
BTT1	YDR252W	Heterotrimeric nascent polypeptide-associated complex beta3 subunit	physical	1	1	1	Affinity Capture-RNA
MRH1	YDR033W	Protein that localizes primarily to the plasma membrane	physical	1	1	1	Affinity Capture-RNA
ERG7	YHR072W	Lanosterol synthase	physical	1	1	1	Affinity Capture-RNA
HSK3	YKL138C-A	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
DAD4	YDR320C-A	Essential subunit of the Dam1 complex (aka DASH complex)	physical	1	1	1	Affinity Capture-RNA
BOL3	YAL046C	Protein involved in Fe-S cluster transfer to mitochondrial clients	physical	1	1	1	Affinity Capture-RNA
BDH1	YAL060W	NAD-dependent (R,R)-butanediol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
HSP12	YFL014W	Plasma membrane protein involved in maintaining membrane organization	physical	1	1	1	Affinity Capture-RNA
GLK1	YCL040W	Glucokinase	physical	1	1	1	Affinity Capture-RNA
MAP1	YLR244C	Methionine aminopeptidase	physical	1	1	1	Affinity Capture-RNA
CPR5	YDR304C	Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the ER	physical	1	1	1	Affinity Capture-RNA
HYR1	YIR037W	Glutathione peroxidase	physical	1	1	1	Affinity Capture-RNA
MRPL11	YDL202W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
HRQ1	YDR291W	3'-5' DNA helicase of the conserved RecQ family	physical	1	1	1	Affinity Capture-RNA
COI1	YDR381C-A	Mitochondrial assembly factor	physical	1	1	1	Affinity Capture-RNA
AVT1	YJR001W	Vacuolar transporter	physical	1	1	1	Affinity Capture-RNA
HXK1	YFR053C	Hexokinase isoenzyme 1	physical	1	1	1	Affinity Capture-RNA
FMP23	YBR047W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GLO2	YDR272W	Cytoplasmic glyoxalase II	physical	1	1	1	Affinity Capture-RNA
MRPL17	YNL252C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
GID11	YLR149C	Substrate receptor of the glucose-induced degradation-deficient (GID)	physical	1	1	1	Affinity Capture-RNA
AEP3	YPL005W	Peripheral mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
FPR2	YDR519W	Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase)	physical	1	1	1	Affinity Capture-RNA
IRC22	YEL001C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
BLS1	YLR408C	Subunit of the BLOC-1 complex involved in endosomal maturation	physical	1	1	1	Affinity Capture-RNA
COQ11	YLR290C	Putative oxidoreductase, subunit of Coenzyme Q biosynthetic complexes	physical	1	1	1	Affinity Capture-RNA
ISD11	YER048W-A	Cysteine desulfurase (Nfs1p) activator	physical	1	1	1	Affinity Capture-RNA
ACP1	YKL192C	Mitochondrial matrix acyl carrier protein	physical	1	1	1	Affinity Capture-RNA
MRPS8	YMR158W	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
ARG56	YER069W	Acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase	physical	1	1	1	Affinity Capture-RNA
ADE16	YLR028C	Enzyme of 'de novo' purine biosynthesis	physical	1	1	1	Affinity Capture-RNA
BRL1	YHR036W	Essential nuclear envelope/ER integral membrane protein	genetic	1	1	1	Negative Genetic
MTG1	YMR097C	Putative GTPase peripheral to the mitochondrial inner membrane	physical	1	1	1	Affinity Capture-RNA
GLG1	YKR058W	Glycogenin glucosyltransferase	physical	1	1	1	Affinity Capture-RNA
MET10	YFR030W	Subunit alpha of assimilatory sulfite reductase	physical	1	1	1	Affinity Capture-RNA
BNA1	YJR025C	3-hydroxyanthranilic acid dioxygenase	physical	1	1	1	Affinity Capture-RNA
GEP7	YGL057C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CRS1	YNL247W	Cysteinyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
IPF1	YDL176W	Protein of unknown function involved in actin patch formation	physical	1	1	1	Affinity Capture-RNA
ACB1	YGR037C	Acyl-CoA-binding protein	physical	1	1	1	Affinity Capture-RNA
FIG2	YCR089W	Cell wall adhesin, expressed specifically during mating	physical	1	1	1	Affinity Capture-RNA
CSR1	YLR380W	Phosphatidylinositol transfer protein	physical	1	1	1	Affinity Capture-RNA
MVB12	YGR206W	ESCRT-I subunit required to stabilize ESCRT-I core complex oligomers	physical	1	1	1	Affinity Capture-RNA
IRC3	YDR332W	Double-stranded DNA-dependent helicase of the DExH/D-box family	physical	1	1	1	Affinity Capture-RNA
CAB4	YGR277C	Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC)	physical	1	1	1	Affinity Capture-RNA
GUT1	YHL032C	Glycerol kinase	physical	1	1	1	Affinity Capture-RNA
MRP35	YNL122C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
LYS14	YDR034C	Transcriptional activator involved in regulating lysine biosynthesis	physical	1	1	1	Affinity Capture-RNA
GRE3	YHR104W	Aldose reductase	physical	1	1	1	Affinity Capture-RNA
INA22	YIR024C	F1F0 ATP synthase peripheral stalk assembly factor	physical	1	1	1	Affinity Capture-RNA
HIS6	YIL020C	Enzyme that catalyzes the fourth step in the histidine pathway	physical	1	1	1	Affinity Capture-RNA
MMF1	YIL051C	Mitochondrial protein required for transamination of isoleucine	physical	1	1	1	Affinity Capture-RNA
ADH7	YCR105W	NADPH-dependent medium chain alcohol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
FUN14	YAL008W	Integral mitochondrial outer membrane (MOM) protein	physical	1	1	1	Affinity Capture-RNA
MEF2	YJL102W	Mitochondrial elongation factor involved in translational elongation	physical	1	1	1	Affinity Capture-RNA
MUK1	YPL070W	Guanine nucleotide exchange factor (GEF)	physical	1	1	1	Affinity Capture-RNA
ANR2	YKL047W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LAM1	YHR155W	Putative sterol transfer protein	physical	1	1	1	Affinity Capture-RNA
CWP2	YKL096W-A	Covalently linked cell wall mannoprotein	physical	1	1	1	Affinity Capture-RNA
DTR1	YBR180W	Putative dityrosine transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
AQY3	YFL054C	Putative channel-like protein	physical	1	1	1	Affinity Capture-RNA
ELF1	YKL160W	Transcription elongation factor with a conserved zinc finger domain	physical	1	1	1	Affinity Capture-RNA
KAE1	YKR038C	Highly conserved ATPase of HSP70/DnaK family	physical	1	1	1	Affinity Capture-RNA
FMP46	YKR049C	Putative redox protein containing a thioredoxin fold	physical	1	1	1	Affinity Capture-RNA
COA4	YLR218C	Twin Cx(9)C protein involved in cytochrome c oxidase organization	physical	1	1	1	Affinity Capture-RNA
GCV3	YAL044C	H subunit of the mitochondrial glycine decarboxylase complex	physical	1	1	1	Affinity Capture-RNA
BIL1	YOR304C-A	Protein that binds Bud6p and has a role in actin cable assembly	physical	1	1	1	Affinity Capture-RNA
ATG33	YLR356W	Mitochondrial mitophagy-specific protein	physical	1	1	1	Affinity Capture-RNA
MRPL40	YPL173W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
ECM3	YOR092W	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MGR1	YCL044C	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	physical	1	1	1	Affinity Capture-RNA
FRD1	YEL047C	Soluble fumarate reductase	physical	1	1	1	Affinity Capture-RNA
MRPS17	YMR188C	Mitochondrial ribosomal protein of the small subunit	physical	1	1	1	Affinity Capture-RNA
DIN7	YDR263C	Mitochondrial nuclease functioning in DNA repair and replication	physical	1	1	1	Affinity Capture-RNA
INM2	YDR287W	Inositol monophosphatase	physical	1	1	1	Affinity Capture-RNA
FMP41	YNL168C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRPL22	YNL177C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
ADE12	YNL220W	Adenylosuccinate synthase	physical	1	1	1	Affinity Capture-RNA
GIS2	YNL255C	Translational activator for mRNAs with internal ribosome entry sites	physical	1	1	1	Affinity Capture-RNA
ERV2	YPR037C	Flavin-linked sulfhydryl oxidase localized to the ER lumen	physical	1	1	1	Affinity Capture-RNA
GOR1	YNL274C	Glyoxylate reductase	physical	1	1	1	Affinity Capture-RNA
GIP4	YAL031C	Cytoplasmic protein that regulates protein phosphatase 1 Glc7p	physical	1	1	1	Affinity Capture-RNA
MRPS12	YNR036C	Mitochondrial protein	physical	1	1	1	Affinity Capture-RNA
LIP5	YOR196C	Protein involved in biosynthesis of the coenzyme lipoic acid	physical	1	1	1	Affinity Capture-RNA
MSF1	YPR047W	Mitochondrial phenylalanyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
CSS1	YIL169C	Protein of unknown function, secreted when constitutively expressed	physical	1	1	1	Affinity Capture-RNA
ALD4	YOR374W	Mitochondrial aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-RNA
ISM1	YPL040C	Mitochondrial isoleucyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
CYC7	YEL039C	Cytochrome c isoform 2, expressed under hypoxic conditions	physical	1	1	1	Affinity Capture-RNA
IRC25	YLR021W	Component of a heterodimeric Poc4p-Irc25p chaperone	physical	1	1	1	Affinity Capture-RNA
CUP9	YPL177C	Homeodomain-containing transcriptional repressor	physical	1	1	1	Affinity Capture-RNA
FAS1	YKL182W	Beta subunit of fatty acid synthetase	physical	1	1	1	Affinity Capture-MS
FCY1	YPR062W	Cytosine deaminase	physical	1	1	1	Affinity Capture-RNA
MCY1	YGR012W	Putative cysteine synthase	physical	1	1	1	Affinity Capture-RNA
AIM23	YJL131C	Mitochondrial translation initiation factor 3 (IF3, mIF3)	physical	1	1	1	Affinity Capture-RNA
AHC2	YCR082W	Component of the ADA histone acetyltransferase complex	physical	1	1	1	Affinity Capture-RNA
MRPL32	YCR003W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
IDP3	YNL009W	Peroxisomal NADP-dependent isocitrate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
MUB1	YMR100W	MYND domain-containing protein	physical	1	1	1	Affinity Capture-RNA
COA3	YJL062W-A	Mitochondrial protein required for cytochrome c oxidase assembly	physical	1	1	1	Affinity Capture-RNA
ALT1	YLR089C	Alanine transaminase (glutamic pyruvic transaminase)	physical	1	1	1	Affinity Capture-RNA
ALT1	YLR089C	Alanine transaminase (glutamic pyruvic transaminase)	genetic	1	1	1	Negative Genetic
LDB19	YOR322C	Alpha-arrestin, Ub-ligase adaptor for Rsp5p	physical	1	1	1	Affinity Capture-RNA
ARO3	YDR035W	3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase	physical	1	1	1	Affinity Capture-RNA
ERP3	YDL018C	Protein with similarity to Emp24p and Erv25p	physical	1	1	1	Affinity Capture-RNA
KTR6	YPL053C	Probable mannosylphosphate transferase	physical	1	1	1	Affinity Capture-RNA
MRPL27	YBR282W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MPA43	YNL249C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GSH1	YJL101C	Gamma glutamylcysteine synthetase	physical	1	1	1	Affinity Capture-RNA
CSA1	YPR174C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ERP5	YHR110W	Protein with similarity to Emp24p and Erv25p	physical	1	1	1	Affinity Capture-RNA
CHS6	YJL099W	Member of the ChAPs (Chs5p-Arf1p-binding proteins) family	physical	1	1	1	Affinity Capture-RNA
DOS2	YDR068W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DPH5	YLR172C	Methyltransferase required for synthesis of diphthamide	physical	1	1	1	Affinity Capture-RNA
GVP36	YIL041W	BAR domain protein that localizes to early and late Golgi vesicles	physical	1	1	1	Affinity Capture-RNA
ISR1	YPR106W	Predicted protein kinase	genetic	1	1	1	Negative Genetic
IGD1	YFR017C	Cytoplasmic protein that inhibits Gdb1p glycogen debranching activity	physical	1	1	1	Affinity Capture-RNA
IPT1	YDR072C	Inositolphosphotransferase	physical	1	1	1	Affinity Capture-RNA
IDI1	YPL117C	Isopentenyl diphosphate:dimethylallyl diphosphate isomerase	physical	1	1	1	Affinity Capture-RNA
ARO2	YGL148W	Bifunctional chorismate synthase and flavin reductase	physical	1	1	1	Affinity Capture-RNA
AZR1	YGR224W	Plasma membrane transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
FYV6	YNL133C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LDB7	YBL006C	Component of the RSC chromatin remodeling complex	physical	1	1	1	Affinity Capture-RNA
APJ1	YNL077W	Hsp40 chaperone with a role in SUMO-mediated protein degradation	physical	1	1	1	Affinity Capture-RNA
ATG21	YPL100W	Phosphoinositide binding protein	physical	1	1	1	Affinity Capture-RNA
AIM29	YKR074W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CMK2	YOL016C	Calmodulin-dependent protein kinase	physical	1	1	1	Affinity Capture-RNA
ADD37	YMR184W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ARV1	YLR242C	Cortical ER protein	genetic	1	1	1	Negative Genetic
FPS1	YLL043W	Aquaglyceroporin, plasma membrane channel	genetic	1	1	1	Negative Genetic
AIM11	YER093C-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CTH1	YDR151C	mRNA binding protein, member of the CCCH zinc finger family	physical	1	1	1	Affinity Capture-RNA
KIN82	YCR091W	Putative serine/threonine protein kinase	physical	1	1	1	Affinity Capture-RNA
HUT1	YPL244C	Protein with a role in UDP-galactose transport to the Golgi lumen	physical	1	1	1	Affinity Capture-RNA
EUG1	YDR518W	Protein disulfide isomerase of the endoplasmic reticulum lumen	physical	1	1	1	Affinity Capture-RNA
DGR2	YKL121W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MNR2	YKL064W	Vacuolar membrane protein required for magnesium homeostasis	physical	1	1	1	Affinity Capture-RNA
LAG1	YHL003C	Ceramide synthase component	physical	1	1	1	Affinity Capture-RNA
EMC4	YGL231C	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
MGR3	YMR115W	Subunit of the mitochondrial (mt) i-AAA protease supercomplex	physical	1	1	1	Affinity Capture-RNA
AIM39	YOL053W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
HIS5	YIL116W	Histidinol-phosphate aminotransferase	physical	1	1	1	Affinity Capture-RNA
GUP1	YGL084C	Plasma membrane protein involved in remodeling GPI anchors	physical	1	1	1	Affinity Capture-RNA
APS2	YJR058C	Small subunit of the clathrin-associated adaptor complex AP-2	physical	1	1	1	Affinity Capture-RNA
HST4	YDR191W	NAD(+)-dependent protein deacetylase	physical	1	1	1	Affinity Capture-RNA
MDG1	YNL173C	Plasma membrane protein	physical	1	1	1	Affinity Capture-RNA
ECM22	YLR228C	Sterol regulatory element binding protein	physical	1	1	1	Affinity Capture-RNA
CHS7	YHR142W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRX3	YBL095W	Protein that associates with mitochondrial ribosome	physical	1	1	1	Affinity Capture-RNA
DAP2	YHR028C	Dipeptidyl aminopeptidase	physical	1	1	1	Affinity Capture-RNA
MPD1	YOR288C	Member of the protein disulfide isomerase (PDI) family	physical	1	1	1	Affinity Capture-RNA
DIA1	YMR316W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MIC26	YGR235C	Component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
LCL1	YPL056C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ECM7	YLR443W	Putative integral membrane protein with a role in calcium uptake	physical	1	1	1	Affinity Capture-RNA
DDP1	YOR163W	Diadenosine and diphosphoinositol polyphosphate phosphatase	physical	1	1	1	Affinity Capture-RNA
ERG24	YNL280C	C-14 sterol reductase	physical	1	1	1	Affinity Capture-RNA
AAD4	YDL243C	Putative aryl-alcohol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
MSK1	YNL073W	Mitochondrial lysine-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
DOT5	YIL010W	Nuclear thiol peroxidase	physical	1	1	1	Affinity Capture-RNA
CYC1	YJR048W	Cytochrome c, isoform 1	physical	1	1	1	Affinity Capture-RNA
EOS1	YNL080C	Protein involved in N-glycosylation	genetic	1	1	1	Positive Genetic
CWH43	YCR017C	GPI lipid remodelase	physical	1	1	1	Affinity Capture-RNA
MRX7	YNL211C	Protein that associates with mitochondrial ribosome	physical	1	1	1	Affinity Capture-RNA
CYT1	YOR065W	Cytochrome c1	physical	1	1	1	Affinity Capture-RNA
GPI19	YDR437W	Subunit of GPI-GlcNAc transferase involved in synthesis of GlcNAc-PI	genetic	1	1	1	Negative Genetic
MRPL49	YJL096W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
MRPL51	YPR100W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
ALG13	YGL047W	Catalytic component of UDP-GlcNAc transferase	physical	1	1	1	Affinity Capture-RNA
LIP1	YMR298W	Ceramide synthase subunit	physical	1	1	1	Affinity Capture-RNA
ATR1	YML116W	Multidrug efflux pump of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
CDC50	YCR094W	Endosomal protein that interacts with phospholipid flippase Drs2p	physical	1	1	1	Affinity Capture-RNA
ALO1	YML086C	D-Arabinono-1,4-lactone oxidase	physical	1	1	1	Affinity Capture-RNA
ERV1	YGR029W	Flavin-linked sulfhydryl oxidase of the mitochondrial IMS	physical	1	1	1	Affinity Capture-RNA
MF(ALPHA)2	YGL089C	Mating pheromone alpha-factor, made by alpha cells	physical	1	1	1	Affinity Capture-RNA
BI4	Q0120	Mitochondrial mRNA maturase	physical	1	1	1	Affinity Capture-RNA
FMP45	YDL222C	Integral membrane protein localized to mitochondria	physical	1	1	1	Affinity Capture-RNA
GUD1	YDL238C	Guanine deaminase	physical	1	1	1	Affinity Capture-RNA
CTA1	YDR256C	Catalase A	physical	1	1	1	Affinity Capture-RNA
ASP1	YDR321W	Cytosolic L-asparaginase, involved in asparagine catabolism	physical	1	1	1	Affinity Capture-RNA
HPA3	YEL066W	D-Amino acid N-acetyltransferase that detoxifies D-amino acids	physical	1	1	1	Affinity Capture-RNA
MOR1	YDR366C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRX18	YBR056W	Putative glycoside hydrolase of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
CPD1	YGR247W	Cyclic nucleotide phosphodiesterase	physical	1	1	1	Affinity Capture-RNA
ASI2	YNL159C	Subunit of the inner nuclear membrane Asi ubiquitin ligase complex	physical	1	1	1	Affinity Capture-RNA
CYC2	YOR037W	Mitochondrial peripheral inner membrane protein	physical	1	1	1	Affinity Capture-RNA
EEB1	YPL095C	Acyl-coenzymeA:ethanol O-acyltransferase	physical	1	1	1	Affinity Capture-RNA
CHS2	YBR038W	Chitin synthase II	physical	1	1	1	Affinity Capture-RNA
AIM6	YDL237W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
EAR1	YMR171C	Specificity factor required for Rsp5p-dependent ubiquitination	physical	1	1	1	Affinity Capture-RNA
MDM34	YGL219C	Mitochondrial component of the ERMES complex	physical	1	1	1	Affinity Capture-RNA
COQ4	YDR204W	Protein with a role in ubiquinone (Coenzyme Q) biosynthesis	physical	1	1	1	Affinity Capture-RNA
COA1	YIL157C	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
ARF3	YOR094W	Glucose-repressible ADP-ribosylation factor	physical	1	1	1	Affinity Capture-RNA
HXT3	YDR345C	Low affinity glucose transporter of the major facilitator superfamily	physical	1	1	1	Affinity Capture-RNA
FRE1	YLR214W	Ferric reductase and cupric reductase	physical	1	1	1	Affinity Capture-RNA
HXT4	YHR092C	High-affinity glucose transporter	physical	1	1	1	Affinity Capture-RNA
DFG16	YOR030W	Probable multiple transmembrane protein	physical	1	1	1	Affinity Capture-RNA
FPY1	YMR178W	FAD pyrophosphatase	physical	1	1	1	Affinity Capture-RNA
MFG1	YDL233W	Regulator of filamentous growth	physical	1	1	1	Affinity Capture-RNA
AIM34	YMR003W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MUP1	YGR055W	High affinity methionine permease	physical	1	1	1	Affinity Capture-RNA
HSP30	YCR021C	Negative regulator of the H(+)-ATPase Pma1p	physical	1	1	1	Affinity Capture-RNA
GOT1	YMR292W	Homodimeric protein that is packaged into COPII vesicles	physical	1	1	1	Affinity Capture-RNA
GPX2	YBR244W	Phospholipid hydroperoxide glutathione peroxidase	physical	1	1	1	Affinity Capture-RNA
GRX3	YDR098C	Glutathione-dependent oxidoreductase	physical	1	1	1	Affinity Capture-RNA
BAP2	YBR068C	High-affinity leucine permease	physical	1	1	1	Affinity Capture-RNA
ALG14	YBR070C	Component of UDP-GlcNAc transferase	physical	1	1	1	Affinity Capture-RNA
ILM1	YJR118C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DPP1	YDR284C	Diacylglycerol pyrophosphate (DGPP) phosphatase	physical	1	1	1	Affinity Capture-RNA
ERP4	YOR016C	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
LGE1	YPL055C	Protein involved in histone H2B ubiquitination	physical	1	1	1	Affinity Capture-RNA
MDM32	YOR147W	Mitochondrial inner membrane protein with similarity to Mdm31p	physical	1	1	1	Affinity Capture-RNA
GPM2	YDL021W	Nonfunctional homolog of Gpm1p phosphoglycerate mutase	physical	1	1	1	Affinity Capture-RNA
BSC1	YDL037C	Protein of unconfirmed function	physical	1	1	1	Affinity Capture-RNA
MIM1	YOL026C	Mitochondrial protein required for outer membrane protein import	physical	1	1	1	Affinity Capture-RNA
MEP1	YGR121C	Ammonium permease	physical	1	1	1	Affinity Capture-RNA
COX7	YMR256C	Subunit VII of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
LSO2	YGR169C-A	Ribosome-associated protein	physical	1	1	1	Affinity Capture-RNA
ADK2	YER170W	Mitochondrial adenylate kinase	physical	1	1	1	Affinity Capture-RNA
ASP3-4	YLR160C	Cell-wall L-asparaginase II involved in asparagine catabolism	physical	1	1	1	Affinity Capture-RNA
ERP6	YGL002W	Member of the p24 family involved in ER to Golgi transport	physical	1	1	1	Affinity Capture-RNA
GPX1	YKL026C	Phospholipid hydroperoxide glutathione peroxidase	physical	1	1	1	Affinity Capture-RNA
COS12	YGL263W	Endosomal protein involved in turnover of plasma membrane proteins	physical	1	1	1	Affinity Capture-RNA
MSP1	YGR028W	Highly-conserved N-terminally anchored AAA-ATPase	physical	1	1	1	Affinity Capture-RNA
DYN3	YMR299C	Dynein light intermediate chain (LIC)	physical	1	1	1	Affinity Capture-RNA
LYP1	YNL268W	Lysine permease	physical	1	1	1	Affinity Capture-RNA
EFR3	YMR212C	Protein required for Stt4-containing PI kinase complex localization	physical	1	1	1	Affinity Capture-RNA
KRE9	YJL174W	Glycoprotein involved in cell wall beta-glucan assembly	genetic	1	1	1	Positive Genetic
COS8	YHL048W	Endosomal protein involved in turnover of plasma membrane proteins	physical	1	1	1	Affinity Capture-RNA
COX23	YHR116W	Protein that functions in mitochondrial copper homeostasis	physical	1	1	1	Affinity Capture-RNA
ALG12	YNR030W	Alpha-1,6-mannosyltransferase localized to the ER	physical	1	1	1	Affinity Capture-RNA
KRE1	YNL322C	Cell wall glycoprotein involved in beta-glucan assembly	physical	1	1	1	Affinity Capture-RNA
COA2	YPL189C-A	Cytochrome oxidase assembly factor	physical	1	1	1	Affinity Capture-RNA
BOL1	YAL044W-A	Mitochondrial matrix protein involved in Fe-S cluster biogenesis	physical	1	1	1	Affinity Capture-RNA
ECM15	YBL001C	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MAK31	YCR020C-A	Non-catalytic subunit of N-terminal acetyltransferase of the NatC type	physical	1	1	1	Affinity Capture-RNA
ATG15	YCR068W	Phospholipase	physical	1	1	1	Affinity Capture-RNA
FRT1	YOR324C	Tail-anchored ER membrane protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FAD1	YDL045C	Flavin adenine dinucleotide (FAD) synthetase	physical	1	1	1	Affinity Capture-RNA
FAD1	YDL045C	Flavin adenine dinucleotide (FAD) synthetase	genetic	1	1	1	Negative Genetic
AMD2	YDR242W	Putative amidase	physical	1	1	1	Affinity Capture-RNA
HPT1	YDR399W	Dimeric hypoxanthine-guanine phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
IRC24	YIR036C	Putative benzil reductase	physical	1	1	1	Affinity Capture-RNA
CDC8	YJR057W	Nucleoside monophosphate and nucleoside diphosphate kinase	genetic	1	1	1	Negative Genetic
ALG9	YNL219C	Mannosyltransferase, involved in N-linked glycosylation	physical	1	1	1	Affinity Capture-RNA
COS10	YNR075W	Endosomal protein involved in turnover of plasma membrane proteins	physical	1	1	1	Affinity Capture-RNA
HAL9	YOL089C	Putative transcription factor containing a zinc finger	physical	1	1	1	Affinity Capture-RNA
CUR1	YPR158W	Sorting factor, central regulator of spatial protein quality control	physical	1	1	1	Affinity Capture-RNA
GRX2	YDR513W	Cytoplasmic glutaredoxin	physical	1	1	1	Affinity Capture-RNA
DAK1	YML070W	Dihydroxyacetone kinase	physical	1	1	1	Affinity Capture-RNA
EDC1	YGL222C	RNA-binding protein that activates mRNA decapping directly	physical	1	1	1	Affinity Capture-RNA
CSI2	YOL007C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
AGA1	YNR044W	Anchorage subunit of a-agglutinin of a-cells	physical	1	1	1	Affinity Capture-RNA
FLO1	YAR050W	Lectin-like protein involved in flocculation	physical	1	1	1	Affinity Capture-RNA
GCG1	YER163C	Gamma-glutamyl cyclotransferase	physical	1	1	1	Affinity Capture-RNA
GPI18	YBR004C	Functional ortholog of human PIG-V	physical	1	1	1	Affinity Capture-RNA
EDS1	YBR033W	Putative zinc cluster protein, predicted to be a transcription factor	physical	1	1	1	Affinity Capture-RNA
ATG41	YPL250C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CWC27	YPL064C	Component of a complex containing Cef1p	physical	1	1	1	Affinity Capture-RNA
EMI1	YDR512C	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
BOR1	YNL275W	Boron efflux transporter of the plasma membrane	physical	1	1	1	Affinity Capture-RNA
ATO2	YNR002C	Putative transmembrane protein involved in export of ammonia	physical	1	1	1	Affinity Capture-RNA
AIM14	YGL160W	NADPH oxidase localized to the perinuclear ER	physical	1	1	1	Affinity Capture-RNA
DLD1	YDL174C	Major mitochondrial D-lactate dehydrogenase	physical	1	1	1	Affinity Capture-RNA
COX13	YGL191W	Subunit VIa of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
COX12	YLR038C	Subunit VIb of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
COX9	YDL067C	Subunit VIIa of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
MHO1	YJR008W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
APT2	YDR441C	Potential adenine phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
MET13	YGL125W	Major isozyme of methylenetetrahydrofolate reductase	physical	1	1	1	Affinity Capture-RNA
MUP3	YHL036W	Low affinity methionine permease	physical	1	1	1	Affinity Capture-RNA
HSP78	YDR258C	Oligomeric mitochondrial matrix chaperone	physical	1	1	1	Affinity Capture-RNA
MET5	YJR137C	Sulfite reductase beta subunit	physical	1	1	1	Affinity Capture-RNA
CRS5	YOR031W	Copper-binding metallothionein	physical	1	1	1	Affinity Capture-RNA
GLO1	YML004C	Monomeric glyoxalase I	physical	1	1	1	Affinity Capture-RNA
GPM3	YOL056W	Nonfunctional homolog of Gpm1p phosphoglycerate mutase	physical	1	1	1	Affinity Capture-RNA
MIC60	YKR016W	Component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
GRE2	YOL151W	3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase	physical	1	1	1	Affinity Capture-RNA
APA2	YDR530C	Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase II	physical	1	1	1	Affinity Capture-RNA
EFM5	YGR001C	S-adenosylmethionine-dependent lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
JAC1	YGL018C	Specialized J-protein that functions in Fe-S cluster biogenesis	physical	1	1	1	Affinity Capture-RNA
HIS1	YER055C	ATP phosphoribosyltransferase	physical	1	1	1	Affinity Capture-RNA
ERG9	YHR190W	Farnesyl-diphosphate farnesyl transferase (squalene synthase)	genetic	1	1	1	Positive Genetic
MYG1	YER156C	Protein involved in mitochondrial function	genetic	1	1	1	Positive Genetic
GTF1	YGR102C	Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex	physical	1	1	1	Affinity Capture-RNA
ERD1	YDR414C	Predicted membrane protein required for lumenal ER protein retention	physical	1	1	1	Affinity Capture-RNA
CCC2	YDR270W	Cu(+2)-transporting P-type ATPase	physical	1	1	1	Affinity Capture-RNA
MTC3	YGL226W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRPL33	YMR286W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
EGO4	YNR034W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
HOR7	YMR251W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MRX14	YDR115W	Putative mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
COX8	YLR395C	Subunit VIII of cytochrome c oxidase (Complex IV)	physical	1	1	1	Affinity Capture-RNA
MRPL50	YNR022C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
LIH1	YJR107W	Putative lipase	physical	1	1	1	Affinity Capture-RNA
MIN8	YPR010C-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MCO10	YOR020W-A	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MPC1	YGL080W	Highly conserved subunit of mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Affinity Capture-RNA
MXR2	YCL033C	Methionine-R-sulfoxide reductase	physical	1	1	1	Affinity Capture-RNA
CBP4	YGR174C	Mitochondrial protein required for assembly of cytochrome bc1 complex	physical	1	1	1	Affinity Capture-RNA
MDM35	YKL053C-A	Mitochondrial intermembrane space protein	physical	1	1	1	Affinity Capture-RNA
COX26	YDR119W-A	Subunit of cytochrome C oxidase complex	physical	1	1	1	Affinity Capture-RNA
MRPL31	YKL138C	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
COX5B	YIL111W	Subunit Vb of cytochrome c oxidase	physical	1	1	1	Affinity Capture-RNA
MIC12	YBR262C	Component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
LYS5	YGL154C	Phosphopantetheinyl transferase involved in lysine biosynthesis	physical	1	1	1	Affinity Capture-RNA
CMC1	YKL137W	Copper-binding protein of the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
MCO8	YIL156W-B	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DPC7	YKL065W-A	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
IGO2	YHR132W-A	Protein required for initiation of G0 program	physical	1	1	1	Affinity Capture-RNA
FMC1	YIL098C	Mitochondrial matrix protein	physical	1	1	1	Affinity Capture-RNA
EMC10	YDR056C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FAU1	YER183C	5,10-methenyltetrahydrofolate synthetase	physical	1	1	1	Affinity Capture-RNA
MHF2	YDL160C-A	Component of the heterotetrameric MHF histone-fold complex	physical	1	1	1	Affinity Capture-RNA
MIX23	YBL107C	Mitochondrial intermembrane space protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GLC3	YEL011W	Glycogen branching enzyme, involved in glycogen accumulation	physical	1	1	1	Affinity Capture-RNA
AIM32	YML050W	2Fe-2S mitochondrial protein involved in redox quality control	physical	1	1	1	Affinity Capture-RNA
MRK1	YDL079C	Glycogen synthase kinase 3 (GSK-3) homolog	physical	1	1	1	Affinity Capture-RNA
ATP19	YOL077W-A	Subunit k of the mitochondrial F1F0 ATP synthase	physical	1	1	1	Affinity Capture-RNA
COQ21	YBR230W-A	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LSC2	YGR244C	Beta subunit of succinyl-CoA ligase	physical	1	1	1	Affinity Capture-RNA
DPC25	YPL107W	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GRX6	YDL010W	Cis-Golgi localized monothiol glutaredoxin, binds Fe-S cluster	physical	1	1	1	Affinity Capture-RNA
MIN6	YBL039W-B	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DOG2	YHR043C	2-deoxyglucose-6-phosphate phosphatase	physical	1	1	1	Affinity Capture-RNA
IRC18	YJL037W	Protein involved in outer spore wall assembly	physical	1	1	1	Affinity Capture-RNA
JLP2	YMR132C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MAL11	YGR289C	High-affinity maltose transporter (alpha-glucoside transporter)	physical	1	1	1	Affinity Capture-RNA
KSH1	YNL024C-A	Essential protein suggested to function early in the secretory pathway	physical	1	1	1	Affinity Capture-RNA
FSH3	YOR280C	Putative serine hydrolase	physical	1	1	1	Affinity Capture-RNA
MCP1	YOR228C	Mitochondrial protein of unknown function involved in lipid homeostas	physical	1	1	1	Affinity Capture-RNA
ECM9	YKR004C	Non-essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
FMP33	YJL161W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MIC27	YNL100W	Component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
ECM4	YKR076W	S-glutathionyl-(chloro)hydroquinone reductase (GS-HQR)	physical	1	1	1	Affinity Capture-RNA
FYV7	YLR068W	Nucleolar protein required for maturation of 18S rRNA	physical	1	1	1	Affinity Capture-RNA
GPI10	YGL142C	Integral membrane protein involved in GPI anchor synthesis	physical	1	1	1	Affinity Capture-RNA
ARR1	YPR199C	Transcriptional activator of the basic leucine zipper (bZIP) family	physical	1	1	1	Affinity Capture-RNA
AAD10	YJR155W	Putative aryl-alcohol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
MNT2	YGL257C	Mannosyltransferase	physical	1	1	1	Affinity Capture-RNA
AAD16	YFL057C	Putative aryl alcohol dehydrogenase	physical	1	1	1	Affinity Capture-RNA
HPF1	YOL155C	Haze-protective mannoprotein	physical	1	1	1	Affinity Capture-RNA
MSC1	YML128C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ATG40	YOR152C	Autophagy receptor with a role in endoplasmic reticulum degradation	physical	1	1	1	Affinity Capture-RNA
MTE1	YGR042W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LOG1	YJL055W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MZM1	YDR493W	Protein required for assembly of the cytochrome bc(1) complex	physical	1	1	1	Affinity Capture-RNA
MPC2	YHR162W	Highly conserved subunit of the mitochondrial pyruvate carrier (MPC)	physical	1	1	1	Affinity Capture-RNA
MRM2	YGL136C	Mitochondrial 2' O-ribose methyltransferase	physical	1	1	1	Affinity Capture-RNA
GLD1	YPR109W	Component of Dsc E3 ligase complex in Golgi and endosomes	physical	1	1	1	Affinity Capture-RNA
CRD1	YDL142C	Cardiolipin synthase	physical	1	1	1	Affinity Capture-RNA
MAL31	YBR298C	Maltose permease	physical	1	1	1	Affinity Capture-RNA
CMC4	YMR194C-B	Protein that localizes to the mitochondrial intermembrane space	physical	1	1	1	Affinity Capture-RNA
GRX7	YBR014C	Cis-golgi localized monothiol glutaredoxin	physical	1	1	1	Affinity Capture-RNA
MGP12	YDR286C	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DSC2	YOL073C	Multi-transmembrane subunit of the DSC ubiquitin ligase complex	physical	1	1	1	Affinity Capture-RNA
CMC2	YBL059C-A	Protein involved in respiratory chain complex assembly or maintenance	physical	1	1	1	Affinity Capture-RNA
LMO1	YLL007C	Homolog of mammalian ELMO (Engulfment and celL MOtility)	physical	1	1	1	Affinity Capture-RNA
MDL2	YPL270W	Mitochondrial inner membrane half-type ABC transporter	physical	1	1	1	Affinity Capture-RNA
CYT2	YKL087C	Cytochrome c1 heme lyase	physical	1	1	1	Affinity Capture-RNA
IZH2	YOL002C	Plasma membrane receptor for plant antifungal osmotin	physical	1	1	1	Affinity Capture-RNA
MAL33	YBR297W	MAL-activator protein	physical	1	1	1	Affinity Capture-RNA
MCH4	YOL119C	Protein with similarity to mammalian monocarboxylate permeases	physical	1	1	1	Affinity Capture-RNA
DPI8	YJL133C-A	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
AGC1	YPR021C	Mitochondrial amino acid transporter	physical	1	1	1	Affinity Capture-RNA
MHF1	YOL086W-A	Component of the heterotetrameric MHF histone-fold complex	physical	1	1	1	Affinity Capture-RNA
GPI15	YNL038W	Protein involved in the synthesis of GlcNAc-PI	physical	1	1	1	Affinity Capture-RNA
GPI15	YNL038W	Protein involved in the synthesis of GlcNAc-PI	genetic	1	1	1	Negative Genetic
HEL1	YKR017C	RING finger ubiquitin ligase (E3)	physical	1	1	1	Affinity Capture-RNA
ERG12	YMR208W	Mevalonate kinase	physical	1	1	1	Affinity Capture-RNA
AFG1	YEL052W	Protein that may act as a chaperone for cytochrome c oxidase subunits	physical	1	1	1	Affinity Capture-RNA
AIM20	YIL158W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
EFM4	YIL064W	Lysine methyltransferase	physical	1	1	1	Affinity Capture-RNA
MCO32	YGR053C	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
IRC20	YLR247C	E3 ubiquitin ligase and putative helicase	physical	1	1	1	Affinity Capture-RNA
MCO12	YKL018C-A	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CDC1	YDR182W	Putative mannose-ethanolamine phosphate phosphodiesterase	physical	1	1	1	Affinity Capture-RNA
CDC1	YDR182W	Putative mannose-ethanolamine phosphate phosphodiesterase	genetic	1	1	1	Negative Genetic
IMP2	YMR035W	Catalytic subunit of mitochondrial inner membrane peptidase complex	physical	1	1	1	Affinity Capture-RNA
HBN1	YCL026C-B	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MUM3	YOR298W	Protein of unknown function involved in outer spore wall organization	physical	1	1	1	Affinity Capture-RNA
FRE4	YNR060W	Ferric reductase	physical	1	1	1	Affinity Capture-RNA
CPR8	YNR028W	Peptidyl-prolyl cis-trans isomerase (cyclophilin)	physical	1	1	1	Affinity Capture-RNA
MST1	YKL194C	Mitochondrial threonyl-tRNA synthetase	physical	1	1	1	Affinity Capture-RNA
APS3	YJL024C	Small subunit of the clathrin-associated adaptor complex AP-3	physical	1	1	1	Affinity Capture-RNA
KEI1	YDR367W	Component of inositol phosphorylceramide (IPC) synthase	physical	1	1	1	Affinity Capture-RNA
LCL2	YLR104W	Putative protein of unknown function	physical	1	1	1	Affinity Capture-RNA
JHD1	YER051W	JmjC domain family histone demethylase specific for H3-K36	physical	1	1	1	Affinity Capture-RNA
MCT1	YOR221C	Predicted malonyl-CoA:ACP transferase	physical	1	1	1	Affinity Capture-RNA
MIM2	YLR099W-A	Mitochondrial protein required for outer membrane protein import	physical	1	1	1	Affinity Capture-RNA
IMA2	YOL157C	Isomaltase (alpha-1,6-glucosidase/alpha-methylglucosidase)	physical	1	1	1	Affinity Capture-RNA
MIC10	YCL057C-A	Conserved component of the MICOS complex	physical	1	1	1	Affinity Capture-RNA
GSH2	YOL049W	Glutathione synthetase	physical	1	1	1	Affinity Capture-RNA
COS5	YJR161C	Endosomal protein involved in turnover of plasma membrane proteins	physical	1	1	1	Affinity Capture-RNA
MCO6	YJL127C-B	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
COX16	YJL003W	Mitochondrial inner membrane protein	physical	1	1	1	Affinity Capture-RNA
EMC3	YKL207W	Member of conserved ER transmembrane complex	physical	1	1	1	Affinity Capture-RNA
DPC13	YGL041W-A	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
COS6	YGR295C	Endosomal protein involved in turnover of plasma membrane proteins	physical	1	1	1	Affinity Capture-RNA
MRPL37	YBR268W	Mitochondrial ribosomal protein of the large subunit	physical	1	1	1	Affinity Capture-RNA
ICY1	YMR195W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
ECM18	YDR125C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LIP2	YLR239C	Lipoyl ligase	physical	1	1	1	Affinity Capture-RNA
KNH1	YDL049C	Protein with similarity to Kre9p	physical	1	1	1	Affinity Capture-RNA
DSD1	YGL196W	D-serine dehydratase (aka D-serine ammonia-lyase)	physical	1	1	1	Affinity Capture-RNA
HEM3	YDL205C	Porphobilinogen deaminase	physical	1	1	1	Affinity Capture-RNA
MCD4	YKL165C	Protein involved in GPI anchor synthesis	physical	1	1	1	Affinity Capture-RNA
HIM1	YDR317W	Protein of unknown function involved in DNA repair	physical	1	1	1	Affinity Capture-RNA
DIT2	YDR402C	N-formyltyrosine oxidase	physical	1	1	1	Affinity Capture-RNA
MAK32	YCR019W	Protein necessary for stability of L-A dsRNA-containing particles	physical	1	1	1	Affinity Capture-RNA
MSM1	YGR171C	Mitochondrial methionyl-tRNA synthetase (MetRS)	physical	1	1	1	Affinity Capture-RNA
DLT1	YMR126C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CAB2	YIL083C	Phosphopantothenoylcysteine synthetase (PPCS)	physical	1	1	1	Affinity Capture-RNA
CHM7	YJL049W	Yeast homolog of human CHMP7, localizes to the endoplasmic reticulum	physical	1	1	1	Affinity Capture-RNA
MPH3	YJR160C	Alpha-glucoside permease	physical	1	1	1	Affinity Capture-RNA
BER1	YLR412W	Protein involved in microtubule-related processes	physical	1	1	1	Affinity Capture-RNA
CLD1	YGR110W	Mitochondrial cardiolipin-specific phospholipase	physical	1	1	1	Affinity Capture-RNA
GMC2	YLR445W	Protein involved in meiotic crossing over	physical	1	1	1	Affinity Capture-RNA
ECM34	YHL043W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
DCV1	YFR012W	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MSS2	YDL107W	Peripherally bound inner membrane protein of the mitochondrial matrix	physical	1	1	1	Affinity Capture-RNA
LDS2	YOL047C	Protein Involved in spore wall assembly	physical	1	1	1	Affinity Capture-RNA
COS9	YKL219W	Endosomal protein involved in turnover of plasma membrane proteins	physical	1	1	1	Affinity Capture-RNA
BIO5	YNR056C	Putative transmembrane protein involved in the biotin biosynthesis	physical	1	1	1	Affinity Capture-RNA
MOD5	YOR274W	Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase	physical	1	1	1	Affinity Capture-RNA
CMI8	YDR461C-A	Putative cytosolic protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GAT3	YLR013W	Protein containing GATA family zinc finger motifs	physical	1	1	1	Affinity Capture-RNA
MIN7	YBR201C-A	Mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LDO16	YMR148W	Protein of unknown function with possible role in spore wall assembly	physical	1	1	1	Affinity Capture-RNA
ALE1	YOR175C	Broad-specificity lysophospholipid acyltransferase	physical	1	1	1	Affinity Capture-RNA
AIM19	YIL087C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GEX2	YKR106W	Proton:glutathione antiporter	physical	1	1	1	Affinity Capture-RNA
AI5_BETA	Q0075	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
LEE1	YPL054W	Zinc-finger protein of unknown function	physical	1	1	1	Affinity Capture-RNA
HEM25	YDL119C	Mitochondrial glycine transporter	physical	1	1	1	Affinity Capture-RNA
HMRA2	YCR096C	Silenced copy of a2 at HMR	physical	1	1	1	Affinity Capture-RNA
ERG8	YMR220W	Phosphomevalonate kinase	physical	1	1	1	Affinity Capture-RNA
LNP1	YHR192W	Lunapark family member involved in ER network formation	physical	1	1	1	Affinity Capture-RNA
CQD2	YLR253W	Mitochondrial protein involved in lipid homeostasis	physical	1	1	1	Affinity Capture-RNA
ALD3	YMR169C	Cytoplasmic aldehyde dehydrogenase	physical	1	1	1	Affinity Capture-RNA
EGO2	YCR075W-A	Subunit of the EGO/GSE complex	physical	1	1	1	Affinity Capture-RNA
LSB6	YJL100W	Type II phosphatidylinositol 4-kinase	physical	1	1	1	Affinity Capture-RNA
LOH1	YJL038C	Protein involved in outer spore wall assembly	physical	1	1	1	Affinity Capture-RNA
ICL2	YPR006C	2-methylisocitrate lyase of the mitochondrial matrix	physical	1	1	1	Affinity Capture-RNA
FMP30	YPL103C	Protein with a role in maintaining mitochondrial morphology	physical	1	1	1	Affinity Capture-RNA
DIA3	YDL024C	Protein of unknown function	physical	1	1	1	Affinity Capture-RNA
HMX1	YLR205C	ER localized heme oxygenase	physical	1	1	1	Affinity Capture-RNA
CUP1-2	YHR055C	Metallothionein	physical	1	1	1	Affinity Capture-RNA
AVT7	YIL088C	Vacuolar amino acid transporter	physical	1	1	1	Affinity Capture-RNA
HXT14	YNL318C	Protein with similarity to hexose transporter family members	physical	1	1	1	Affinity Capture-RNA
DPI34	YOR114W	Putative mitochondrial protein of unknown function	physical	1	1	1	Affinity Capture-RNA
MIX14	YDR031W	Mitochondrial intermembrane space protein of unknown function	physical	1	1	1	Affinity Capture-RNA
CTR86	YCR054C	Essential protein of unknown function	physical	1	1	1	Affinity Capture-RNA
GPI8	YDR331W	Catalytic subunit of the ER membrane GPI transamidase complex	genetic	1	1	1	Positive Genetic
FYV12	YOR183W	Protein of unknown function	genetic	1	1	1	Negative Genetic